Multiple sequence alignment - TraesCS3D01G346500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G346500 chr3D 100.000 5569 0 0 1 5569 457559139 457553571 0.000000e+00 10285.0
1 TraesCS3D01G346500 chr3B 90.680 3133 150 51 2 3077 605271924 605268877 0.000000e+00 4037.0
2 TraesCS3D01G346500 chr3B 92.263 1874 83 32 3340 5181 605268432 605266589 0.000000e+00 2601.0
3 TraesCS3D01G346500 chr3B 90.303 165 16 0 5254 5418 605266576 605266412 3.380000e-52 217.0
4 TraesCS3D01G346500 chr3B 90.411 146 12 1 5412 5557 605169240 605169097 2.050000e-44 191.0
5 TraesCS3D01G346500 chr3A 88.488 3101 190 78 60 3098 600344599 600341604 0.000000e+00 3594.0
6 TraesCS3D01G346500 chr3A 92.210 2131 78 40 3099 5181 600341569 600339479 0.000000e+00 2935.0
7 TraesCS3D01G346500 chr3A 87.539 955 89 17 3943 4871 343940471 343939521 0.000000e+00 1077.0
8 TraesCS3D01G346500 chr3A 90.667 150 11 1 3797 3946 344048347 344048201 4.400000e-46 196.0
9 TraesCS3D01G346500 chr3A 100.000 34 0 0 5239 5272 600339459 600339426 4.660000e-06 63.9
10 TraesCS3D01G346500 chr1B 89.151 1189 80 21 3797 4964 179860603 179861763 0.000000e+00 1435.0
11 TraesCS3D01G346500 chr1B 85.560 741 61 18 4245 4964 159781221 159781936 0.000000e+00 734.0
12 TraesCS3D01G346500 chr1B 96.390 277 9 1 3797 4073 159780945 159781220 6.580000e-124 455.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G346500 chr3D 457553571 457559139 5568 True 10285.000000 10285 100.000 1 5569 1 chr3D.!!$R1 5568
1 TraesCS3D01G346500 chr3B 605266412 605271924 5512 True 2285.000000 4037 91.082 2 5418 3 chr3B.!!$R2 5416
2 TraesCS3D01G346500 chr3A 600339426 600344599 5173 True 2197.633333 3594 93.566 60 5272 3 chr3A.!!$R3 5212
3 TraesCS3D01G346500 chr3A 343939521 343940471 950 True 1077.000000 1077 87.539 3943 4871 1 chr3A.!!$R1 928
4 TraesCS3D01G346500 chr1B 179860603 179861763 1160 False 1435.000000 1435 89.151 3797 4964 1 chr1B.!!$F1 1167
5 TraesCS3D01G346500 chr1B 159780945 159781936 991 False 594.500000 734 90.975 3797 4964 2 chr1B.!!$F2 1167

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
762 823 0.111253 CACCCCTTGCCACTTCTTCT 59.889 55.000 0.0 0.0 0.00 2.85 F
1163 1238 0.108138 GTTGGTGTCTGATCCCTCCG 60.108 60.000 0.0 0.0 0.00 4.63 F
1468 1567 1.021202 CGGTGTCAAAACCTGCTTCA 58.979 50.000 0.0 0.0 38.14 3.02 F
1725 1831 1.777272 AGAAGAAGGTGCAGAAAGGGT 59.223 47.619 0.0 0.0 0.00 4.34 F
2950 3080 1.532007 CATTGCACACAAACAATGGCC 59.468 47.619 0.0 0.0 46.01 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1652 1758 2.305927 ACACAACTGATAGAAGGGGTGG 59.694 50.0 0.0 0.0 32.66 4.61 R
2902 3032 0.386113 GGGCAGTTTGGCGTTTAACA 59.614 50.0 0.0 0.0 44.78 2.41 R
2905 3035 0.752009 TGTGGGCAGTTTGGCGTTTA 60.752 50.0 0.0 0.0 44.78 2.01 R
3194 3387 2.145397 ATAGAGCGGAGAACTGTCCA 57.855 50.0 0.0 0.0 36.23 4.02 R
4904 5267 0.038159 AGGTCGTTTCTTCTCAGCCG 60.038 55.0 0.0 0.0 0.00 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.897122 ACCGGGGGAAGCAAGCAA 61.897 61.111 6.32 0.00 0.00 3.91
39 40 4.233408 CAAAGGCGTTTGCTCTGC 57.767 55.556 17.97 0.00 42.25 4.26
44 45 2.332514 GCGTTTGCTCTGCTTGCA 59.667 55.556 0.00 0.00 38.39 4.08
100 107 1.538512 GGGTTAACCGAAAGCTTGACC 59.461 52.381 18.39 0.00 36.71 4.02
176 183 3.757248 CTATGACAGGCGGGCCACC 62.757 68.421 12.97 1.13 38.92 4.61
199 206 2.588856 GATACAGGTGTCACGGGGCC 62.589 65.000 0.00 0.00 0.00 5.80
367 403 4.200283 CGCCGCCTCCTCTCAGTC 62.200 72.222 0.00 0.00 0.00 3.51
368 404 3.844090 GCCGCCTCCTCTCAGTCC 61.844 72.222 0.00 0.00 0.00 3.85
369 405 2.043450 CCGCCTCCTCTCAGTCCT 60.043 66.667 0.00 0.00 0.00 3.85
370 406 2.124693 CCGCCTCCTCTCAGTCCTC 61.125 68.421 0.00 0.00 0.00 3.71
457 500 4.338539 GTGACCACGACGGCGACT 62.339 66.667 22.49 0.00 41.64 4.18
481 524 1.337703 CAGAGGGAGCAGAAGAGATCG 59.662 57.143 0.00 0.00 0.00 3.69
685 745 2.837371 CTTTCCTCCGACGGGTGAGC 62.837 65.000 15.25 0.00 33.83 4.26
716 776 9.685828 GTGAGCATAGTAAAAGAGGAATAGTAG 57.314 37.037 0.00 0.00 0.00 2.57
754 815 1.063070 TACTTCACCACCCCTTGCCA 61.063 55.000 0.00 0.00 0.00 4.92
762 823 0.111253 CACCCCTTGCCACTTCTTCT 59.889 55.000 0.00 0.00 0.00 2.85
765 829 0.322906 CCCTTGCCACTTCTTCTCCC 60.323 60.000 0.00 0.00 0.00 4.30
798 862 1.842381 CTTCCACTCCTTTCCGCCCT 61.842 60.000 0.00 0.00 0.00 5.19
806 878 1.000896 CTTTCCGCCCTCCCACAAT 60.001 57.895 0.00 0.00 0.00 2.71
807 879 1.304052 TTTCCGCCCTCCCACAATG 60.304 57.895 0.00 0.00 0.00 2.82
808 880 3.936772 TTCCGCCCTCCCACAATGC 62.937 63.158 0.00 0.00 0.00 3.56
810 882 4.431131 CGCCCTCCCACAATGCCT 62.431 66.667 0.00 0.00 0.00 4.75
811 883 2.440980 GCCCTCCCACAATGCCTC 60.441 66.667 0.00 0.00 0.00 4.70
980 1055 2.464865 CGATGTGAAAGTCGGATCTCC 58.535 52.381 0.00 0.00 34.39 3.71
1061 1136 0.800300 CGCGCTCTTCTTCTCTGGTC 60.800 60.000 5.56 0.00 0.00 4.02
1091 1166 2.159517 GGTGCGGCAGAGTAGATTTTTG 60.160 50.000 1.18 0.00 0.00 2.44
1092 1167 2.083774 TGCGGCAGAGTAGATTTTTGG 58.916 47.619 0.00 0.00 0.00 3.28
1137 1212 2.304092 GTGGGGGATTAAATTCGGTCC 58.696 52.381 0.00 0.00 0.00 4.46
1163 1238 0.108138 GTTGGTGTCTGATCCCTCCG 60.108 60.000 0.00 0.00 0.00 4.63
1166 1241 1.677637 GGTGTCTGATCCCTCCGGTC 61.678 65.000 0.00 0.00 0.00 4.79
1267 1342 5.743636 TGCCTTTCTTGCCATATTTTCTT 57.256 34.783 0.00 0.00 0.00 2.52
1292 1367 6.544038 TTTATGATGCACGATTATGTCCTG 57.456 37.500 0.00 0.00 0.00 3.86
1323 1398 1.070786 TATCAAATCTCCGCCCGCC 59.929 57.895 0.00 0.00 0.00 6.13
1332 1407 3.493440 CCGCCCGCCGTTTACTTC 61.493 66.667 0.00 0.00 34.38 3.01
1343 1420 5.349543 CCGCCGTTTACTTCTAGTATGTTTT 59.650 40.000 0.00 0.00 29.64 2.43
1387 1464 6.350629 AGATTTTGGCAAGCTTAGAATTGT 57.649 33.333 0.00 0.00 0.00 2.71
1388 1465 6.161381 AGATTTTGGCAAGCTTAGAATTGTG 58.839 36.000 0.00 0.00 0.00 3.33
1390 1467 6.398234 TTTTGGCAAGCTTAGAATTGTGTA 57.602 33.333 0.00 0.00 0.00 2.90
1393 1470 4.010349 GGCAAGCTTAGAATTGTGTAGGT 58.990 43.478 0.00 0.00 0.00 3.08
1398 1475 4.286032 AGCTTAGAATTGTGTAGGTGGTCA 59.714 41.667 0.00 0.00 0.00 4.02
1417 1494 1.195448 CAGCTTACAAACCTCACAGCG 59.805 52.381 0.00 0.00 32.31 5.18
1418 1495 1.202651 AGCTTACAAACCTCACAGCGT 60.203 47.619 0.00 0.00 32.31 5.07
1419 1496 2.036733 AGCTTACAAACCTCACAGCGTA 59.963 45.455 0.00 0.00 32.31 4.42
1468 1567 1.021202 CGGTGTCAAAACCTGCTTCA 58.979 50.000 0.00 0.00 38.14 3.02
1479 1578 4.861102 AACCTGCTTCATTTCTTTCAGG 57.139 40.909 4.69 4.69 44.80 3.86
1487 1586 6.695278 TGCTTCATTTCTTTCAGGTTTTTACG 59.305 34.615 0.00 0.00 0.00 3.18
1489 1588 5.525199 TCATTTCTTTCAGGTTTTTACGCC 58.475 37.500 0.00 0.00 0.00 5.68
1592 1691 8.982685 CCGATCCACATATGCTATGATTTATAC 58.017 37.037 1.58 0.00 0.00 1.47
1593 1692 9.755804 CGATCCACATATGCTATGATTTATACT 57.244 33.333 1.58 0.00 0.00 2.12
1620 1723 3.324846 ACCTTGGATTTTTCTGGCCTTTC 59.675 43.478 3.32 0.00 0.00 2.62
1624 1727 5.213891 TGGATTTTTCTGGCCTTTCTTTC 57.786 39.130 3.32 0.00 0.00 2.62
1625 1728 4.653341 TGGATTTTTCTGGCCTTTCTTTCA 59.347 37.500 3.32 0.00 0.00 2.69
1627 1730 4.400529 TTTTTCTGGCCTTTCTTTCACC 57.599 40.909 3.32 0.00 0.00 4.02
1629 1732 3.312736 TTCTGGCCTTTCTTTCACCTT 57.687 42.857 3.32 0.00 0.00 3.50
1631 1734 2.443255 TCTGGCCTTTCTTTCACCTTCT 59.557 45.455 3.32 0.00 0.00 2.85
1632 1735 3.650942 TCTGGCCTTTCTTTCACCTTCTA 59.349 43.478 3.32 0.00 0.00 2.10
1633 1736 4.104102 TCTGGCCTTTCTTTCACCTTCTAA 59.896 41.667 3.32 0.00 0.00 2.10
1634 1737 4.142038 TGGCCTTTCTTTCACCTTCTAAC 58.858 43.478 3.32 0.00 0.00 2.34
1635 1738 3.188667 GGCCTTTCTTTCACCTTCTAACG 59.811 47.826 0.00 0.00 0.00 3.18
1637 1740 4.275196 GCCTTTCTTTCACCTTCTAACGTT 59.725 41.667 5.88 5.88 0.00 3.99
1638 1741 5.220989 GCCTTTCTTTCACCTTCTAACGTTT 60.221 40.000 5.91 0.00 0.00 3.60
1639 1742 6.427974 CCTTTCTTTCACCTTCTAACGTTTC 58.572 40.000 5.91 0.00 0.00 2.78
1652 1758 9.974750 CCTTCTAACGTTTCTTTAGATGATTTC 57.025 33.333 5.91 0.00 35.86 2.17
1653 1759 9.974750 CTTCTAACGTTTCTTTAGATGATTTCC 57.025 33.333 5.91 0.00 35.86 3.13
1654 1760 9.496873 TTCTAACGTTTCTTTAGATGATTTCCA 57.503 29.630 5.91 0.00 35.86 3.53
1655 1761 8.932791 TCTAACGTTTCTTTAGATGATTTCCAC 58.067 33.333 5.91 0.00 31.86 4.02
1697 1803 7.283127 TGTTCTGAAGCTTTGATCTGTACTTTT 59.717 33.333 0.00 0.00 0.00 2.27
1725 1831 1.777272 AGAAGAAGGTGCAGAAAGGGT 59.223 47.619 0.00 0.00 0.00 4.34
1733 1839 2.514803 GTGCAGAAAGGGTACACCAAT 58.485 47.619 0.00 0.00 43.89 3.16
1874 1981 6.716173 ACTTAAATTTTGCATTTGCCCTCATT 59.284 30.769 0.00 0.00 41.18 2.57
1887 1994 2.159324 GCCCTCATTTTCAGTAGCTTGC 60.159 50.000 0.00 0.00 0.00 4.01
2232 2340 4.007644 CTCACAGCAGTCCCCGCA 62.008 66.667 0.00 0.00 0.00 5.69
2321 2429 5.073144 TCAGGGGTTATCTGGTAATGAATCC 59.927 44.000 0.00 0.00 33.36 3.01
2397 2505 6.382859 TCTGTCCTTGGTAGCAATACAATAGA 59.617 38.462 18.15 12.19 0.00 1.98
2471 2591 2.810650 CGTAAGATGTCAGCCTGGTAC 58.189 52.381 0.00 0.00 43.02 3.34
2739 2864 3.601443 ACTTCTTGGGATGAAGAGTCG 57.399 47.619 10.00 0.00 42.37 4.18
2750 2879 8.873186 TGGGATGAAGAGTCGTATATATGTTA 57.127 34.615 1.91 0.00 0.00 2.41
2902 3032 2.939103 GTCGCTAGTTGATGGAAATGCT 59.061 45.455 0.00 0.00 0.00 3.79
2905 3035 3.127548 CGCTAGTTGATGGAAATGCTGTT 59.872 43.478 0.00 0.00 0.00 3.16
2950 3080 1.532007 CATTGCACACAAACAATGGCC 59.468 47.619 0.00 0.00 46.01 5.36
3122 3315 2.124983 CATGAGACACCCCCTGCG 60.125 66.667 0.00 0.00 0.00 5.18
3194 3387 2.026822 CACCTCTAGCCAACTGGTTGAT 60.027 50.000 14.17 5.88 42.93 2.57
3604 3938 8.481492 TTCTCATTATATTGCCAATTCCATGT 57.519 30.769 0.00 0.00 0.00 3.21
3669 4003 2.174639 ACCAACATTCACAGACCAAGGA 59.825 45.455 0.00 0.00 0.00 3.36
3768 4102 2.166664 GGATAAAGACGGTGCTCTGACT 59.833 50.000 0.68 0.00 0.00 3.41
3946 4280 1.211457 CAAGCCCAAGAGATAGCTGGT 59.789 52.381 0.00 0.00 35.30 4.00
4319 4659 5.438833 TGTCAATGTTGCCTGATATGATCA 58.561 37.500 0.00 0.00 37.76 2.92
4337 4678 2.680913 AATGAACGTCAGGCGCTGC 61.681 57.895 7.64 0.00 46.11 5.25
4406 4747 9.429359 CTCTAGTTTAGATTGCTTTCTCTCAAA 57.571 33.333 0.00 0.00 33.66 2.69
4563 4904 4.630644 AAGTGAGAGATGATTGGTGTGT 57.369 40.909 0.00 0.00 0.00 3.72
4569 4910 1.155889 GATGATTGGTGTGTGCGTGA 58.844 50.000 0.00 0.00 0.00 4.35
4660 5010 3.829886 AACCACAATGTAAGACATGCG 57.170 42.857 0.00 0.00 37.97 4.73
4661 5011 2.083774 ACCACAATGTAAGACATGCGG 58.916 47.619 0.00 0.00 37.97 5.69
4666 5016 5.065859 CCACAATGTAAGACATGCGGAATTA 59.934 40.000 0.00 0.00 37.97 1.40
4671 5021 5.483811 TGTAAGACATGCGGAATTACTGAA 58.516 37.500 0.00 0.00 0.00 3.02
4673 5023 5.490139 AAGACATGCGGAATTACTGAATG 57.510 39.130 0.00 0.00 44.42 2.67
4696 5046 5.124297 TGTTGAGATATGCATGTGTTCTTGG 59.876 40.000 10.16 0.00 0.00 3.61
4698 5048 5.255687 TGAGATATGCATGTGTTCTTGGTT 58.744 37.500 10.16 0.00 0.00 3.67
4741 5094 1.278985 ACTGATTCAGAATGGTGCCGA 59.721 47.619 20.33 0.00 36.16 5.54
4746 5099 0.394216 TCAGAATGGTGCCGATTGGG 60.394 55.000 0.00 0.00 36.16 4.12
4747 5100 1.076777 AGAATGGTGCCGATTGGGG 60.077 57.895 0.00 0.00 35.78 4.96
4757 5110 0.328258 CCGATTGGGGTCCTGAGTTT 59.672 55.000 0.00 0.00 0.00 2.66
4758 5111 1.557832 CCGATTGGGGTCCTGAGTTTA 59.442 52.381 0.00 0.00 0.00 2.01
4782 5135 5.720202 TGTACTTGGTACATAGAGCAGTTG 58.280 41.667 6.45 0.00 42.99 3.16
4783 5136 5.479027 TGTACTTGGTACATAGAGCAGTTGA 59.521 40.000 6.45 0.00 42.99 3.18
4790 5145 6.426937 TGGTACATAGAGCAGTTGAAGTTTTC 59.573 38.462 0.00 0.00 0.00 2.29
4792 5147 5.625150 ACATAGAGCAGTTGAAGTTTTCCT 58.375 37.500 0.00 0.00 0.00 3.36
4810 5165 0.318445 CTCAGTTGGCTTGCACTTGC 60.318 55.000 0.00 0.00 42.50 4.01
4826 5181 8.568676 TTGCACTTGCTATAAAACCTGTATTA 57.431 30.769 2.33 0.00 42.66 0.98
4841 5204 7.578310 ACCTGTATTATTCTTCGCTACTACA 57.422 36.000 0.00 0.00 0.00 2.74
4852 5215 4.614555 TCGCTACTACAATTGGCATTTG 57.385 40.909 17.89 17.89 0.00 2.32
4857 5220 3.707316 ACTACAATTGGCATTTGGGCTA 58.293 40.909 21.97 8.32 43.83 3.93
4871 5234 7.267857 GCATTTGGGCTACTGATTCTTTTAAT 58.732 34.615 0.00 0.00 0.00 1.40
4872 5235 7.765819 GCATTTGGGCTACTGATTCTTTTAATT 59.234 33.333 0.00 0.00 0.00 1.40
4873 5236 9.657419 CATTTGGGCTACTGATTCTTTTAATTT 57.343 29.630 0.00 0.00 0.00 1.82
4876 5239 9.487790 TTGGGCTACTGATTCTTTTAATTTTTG 57.512 29.630 0.00 0.00 0.00 2.44
4890 5253 9.351570 CTTTTAATTTTTGCAACATTGTGGTTT 57.648 25.926 0.00 0.00 0.00 3.27
4891 5254 9.696917 TTTTAATTTTTGCAACATTGTGGTTTT 57.303 22.222 0.00 0.00 0.00 2.43
4892 5255 9.696917 TTTAATTTTTGCAACATTGTGGTTTTT 57.303 22.222 0.00 0.00 0.00 1.94
4893 5256 7.578169 AATTTTTGCAACATTGTGGTTTTTG 57.422 28.000 0.00 0.00 0.00 2.44
4894 5257 4.691860 TTTGCAACATTGTGGTTTTTGG 57.308 36.364 0.00 0.00 0.00 3.28
4895 5258 3.340814 TGCAACATTGTGGTTTTTGGT 57.659 38.095 0.00 0.00 0.00 3.67
4896 5259 3.679389 TGCAACATTGTGGTTTTTGGTT 58.321 36.364 0.00 0.00 0.00 3.67
4897 5260 4.074970 TGCAACATTGTGGTTTTTGGTTT 58.925 34.783 0.00 0.00 0.00 3.27
4898 5261 4.520492 TGCAACATTGTGGTTTTTGGTTTT 59.480 33.333 0.00 0.00 0.00 2.43
4899 5262 5.010012 TGCAACATTGTGGTTTTTGGTTTTT 59.990 32.000 0.00 0.00 0.00 1.94
4900 5263 5.344396 GCAACATTGTGGTTTTTGGTTTTTG 59.656 36.000 0.00 0.00 0.00 2.44
4901 5264 6.672147 CAACATTGTGGTTTTTGGTTTTTGA 58.328 32.000 0.00 0.00 0.00 2.69
4902 5265 6.884280 ACATTGTGGTTTTTGGTTTTTGAA 57.116 29.167 0.00 0.00 0.00 2.69
4903 5266 7.277174 ACATTGTGGTTTTTGGTTTTTGAAA 57.723 28.000 0.00 0.00 0.00 2.69
4904 5267 7.142021 ACATTGTGGTTTTTGGTTTTTGAAAC 58.858 30.769 0.00 0.00 0.00 2.78
4908 5271 3.437395 GGTTTTTGGTTTTTGAAACGGCT 59.563 39.130 0.00 0.00 33.86 5.52
4911 5274 2.861462 TGGTTTTTGAAACGGCTGAG 57.139 45.000 0.00 0.00 0.00 3.35
4918 5281 3.963383 TTGAAACGGCTGAGAAGAAAC 57.037 42.857 0.00 0.00 0.00 2.78
4938 5301 2.635915 ACGACCTGGATTCAGTTACCAA 59.364 45.455 0.00 0.00 39.31 3.67
4959 5322 5.163513 CAAATCAGGTTGCAACAGGATTAC 58.836 41.667 31.21 16.32 34.36 1.89
4980 5343 2.863740 CGAAGCGTGATTGCTAACCATA 59.136 45.455 0.00 0.00 46.60 2.74
4981 5344 3.494626 CGAAGCGTGATTGCTAACCATAT 59.505 43.478 0.00 0.00 46.60 1.78
4999 5364 4.872691 CCATATATAGGCTGTAGCTTGTGC 59.127 45.833 0.00 0.00 41.70 4.57
5020 5385 2.100749 CTGGGCTGAAAAGGAACGTTTT 59.899 45.455 0.46 5.18 40.65 2.43
5021 5386 3.288964 TGGGCTGAAAAGGAACGTTTTA 58.711 40.909 0.46 0.00 40.65 1.52
5022 5387 3.892588 TGGGCTGAAAAGGAACGTTTTAT 59.107 39.130 0.46 0.00 40.65 1.40
5144 5522 0.178301 GGTACTCCCTAAGCACCTGC 59.822 60.000 0.00 0.00 38.28 4.85
5178 5556 4.612264 TCAAAGGTACCACTACCAACTC 57.388 45.455 15.94 0.00 44.75 3.01
5181 5559 2.537143 AGGTACCACTACCAACTCCAG 58.463 52.381 15.94 0.00 44.75 3.86
5182 5560 1.066358 GGTACCACTACCAACTCCAGC 60.066 57.143 7.15 0.00 42.16 4.85
5184 5562 1.362224 ACCACTACCAACTCCAGCAT 58.638 50.000 0.00 0.00 0.00 3.79
5185 5563 1.705186 ACCACTACCAACTCCAGCATT 59.295 47.619 0.00 0.00 0.00 3.56
5187 5565 3.157087 CCACTACCAACTCCAGCATTTT 58.843 45.455 0.00 0.00 0.00 1.82
5188 5566 3.573967 CCACTACCAACTCCAGCATTTTT 59.426 43.478 0.00 0.00 0.00 1.94
5190 5568 5.418840 CCACTACCAACTCCAGCATTTTTAT 59.581 40.000 0.00 0.00 0.00 1.40
5193 5571 8.131100 CACTACCAACTCCAGCATTTTTATATG 58.869 37.037 0.00 0.00 0.00 1.78
5194 5572 6.469782 ACCAACTCCAGCATTTTTATATGG 57.530 37.500 0.00 0.00 0.00 2.74
5195 5573 5.957774 ACCAACTCCAGCATTTTTATATGGT 59.042 36.000 0.00 0.00 36.73 3.55
5218 5596 5.366829 GGTACCACTACCAACATCAAAAC 57.633 43.478 7.15 0.00 42.16 2.43
5219 5597 4.083696 GGTACCACTACCAACATCAAAACG 60.084 45.833 7.15 0.00 42.16 3.60
5220 5598 2.292292 ACCACTACCAACATCAAAACGC 59.708 45.455 0.00 0.00 0.00 4.84
5221 5599 2.351350 CCACTACCAACATCAAAACGCC 60.351 50.000 0.00 0.00 0.00 5.68
5222 5600 1.883926 ACTACCAACATCAAAACGCCC 59.116 47.619 0.00 0.00 0.00 6.13
5223 5601 1.201414 CTACCAACATCAAAACGCCCC 59.799 52.381 0.00 0.00 0.00 5.80
5224 5602 0.469144 ACCAACATCAAAACGCCCCT 60.469 50.000 0.00 0.00 0.00 4.79
5225 5603 0.243636 CCAACATCAAAACGCCCCTC 59.756 55.000 0.00 0.00 0.00 4.30
5226 5604 0.243636 CAACATCAAAACGCCCCTCC 59.756 55.000 0.00 0.00 0.00 4.30
5227 5605 0.898326 AACATCAAAACGCCCCTCCC 60.898 55.000 0.00 0.00 0.00 4.30
5228 5606 1.000896 CATCAAAACGCCCCTCCCT 60.001 57.895 0.00 0.00 0.00 4.20
5229 5607 0.254747 CATCAAAACGCCCCTCCCTA 59.745 55.000 0.00 0.00 0.00 3.53
5230 5608 0.255033 ATCAAAACGCCCCTCCCTAC 59.745 55.000 0.00 0.00 0.00 3.18
5231 5609 0.838987 TCAAAACGCCCCTCCCTACT 60.839 55.000 0.00 0.00 0.00 2.57
5232 5610 0.037734 CAAAACGCCCCTCCCTACTT 59.962 55.000 0.00 0.00 0.00 2.24
5233 5611 0.037734 AAAACGCCCCTCCCTACTTG 59.962 55.000 0.00 0.00 0.00 3.16
5234 5612 2.479820 AAACGCCCCTCCCTACTTGC 62.480 60.000 0.00 0.00 0.00 4.01
5235 5613 3.083997 CGCCCCTCCCTACTTGCT 61.084 66.667 0.00 0.00 0.00 3.91
5236 5614 2.592308 GCCCCTCCCTACTTGCTG 59.408 66.667 0.00 0.00 0.00 4.41
5237 5615 2.301738 GCCCCTCCCTACTTGCTGT 61.302 63.158 0.00 0.00 0.00 4.40
5298 5676 3.432749 GGCTCTGAAGATCTACCAATGCA 60.433 47.826 0.00 0.00 0.00 3.96
5300 5678 4.451774 GCTCTGAAGATCTACCAATGCATC 59.548 45.833 0.00 0.00 0.00 3.91
5303 5681 6.053650 TCTGAAGATCTACCAATGCATCTTG 58.946 40.000 0.00 0.00 36.04 3.02
5325 5703 5.101628 TGCATTTTTAAATCGCCTCACATC 58.898 37.500 0.00 0.00 0.00 3.06
5330 5708 4.487714 TTAAATCGCCTCACATCCTTCT 57.512 40.909 0.00 0.00 0.00 2.85
5340 5718 3.213506 TCACATCCTTCTGTTGTGGTTG 58.786 45.455 2.80 0.00 42.46 3.77
5342 5720 2.951642 ACATCCTTCTGTTGTGGTTGTG 59.048 45.455 0.00 0.00 33.91 3.33
5348 5726 1.472082 TCTGTTGTGGTTGTGCAGTTG 59.528 47.619 0.00 0.00 0.00 3.16
5350 5728 0.530288 GTTGTGGTTGTGCAGTTGGT 59.470 50.000 0.00 0.00 0.00 3.67
5351 5729 1.067213 GTTGTGGTTGTGCAGTTGGTT 60.067 47.619 0.00 0.00 0.00 3.67
5361 5739 4.793071 TGTGCAGTTGGTTTTTGATATCG 58.207 39.130 0.00 0.00 0.00 2.92
5370 5748 5.979993 TGGTTTTTGATATCGTAGGCTGTA 58.020 37.500 0.00 0.00 0.00 2.74
5379 5757 1.198408 TCGTAGGCTGTACTGTGAACG 59.802 52.381 0.00 12.91 0.00 3.95
5418 5796 2.808919 TCTAGGCCGATATCTTCAGGG 58.191 52.381 0.00 0.00 0.00 4.45
5419 5797 1.827969 CTAGGCCGATATCTTCAGGGG 59.172 57.143 0.00 0.00 0.00 4.79
5420 5798 1.003233 GGCCGATATCTTCAGGGGC 60.003 63.158 8.17 8.17 39.79 5.80
5421 5799 1.484444 GGCCGATATCTTCAGGGGCT 61.484 60.000 14.32 0.00 40.35 5.19
5422 5800 0.398318 GCCGATATCTTCAGGGGCTT 59.602 55.000 9.15 0.00 37.57 4.35
5423 5801 1.609320 GCCGATATCTTCAGGGGCTTC 60.609 57.143 9.15 0.00 37.57 3.86
5424 5802 1.002544 CCGATATCTTCAGGGGCTTCC 59.997 57.143 0.34 0.00 0.00 3.46
5425 5803 1.337260 CGATATCTTCAGGGGCTTCCG 60.337 57.143 0.34 0.00 41.52 4.30
5426 5804 1.694696 GATATCTTCAGGGGCTTCCGT 59.305 52.381 0.00 0.00 41.52 4.69
5427 5805 1.580059 TATCTTCAGGGGCTTCCGTT 58.420 50.000 0.00 0.00 41.52 4.44
5428 5806 1.580059 ATCTTCAGGGGCTTCCGTTA 58.420 50.000 0.00 0.00 41.52 3.18
5429 5807 0.611714 TCTTCAGGGGCTTCCGTTAC 59.388 55.000 0.00 0.00 41.52 2.50
5430 5808 0.613777 CTTCAGGGGCTTCCGTTACT 59.386 55.000 0.00 0.00 41.52 2.24
5431 5809 1.003233 CTTCAGGGGCTTCCGTTACTT 59.997 52.381 0.00 0.00 41.52 2.24
5432 5810 0.323629 TCAGGGGCTTCCGTTACTTG 59.676 55.000 0.00 0.00 41.52 3.16
5433 5811 0.323629 CAGGGGCTTCCGTTACTTGA 59.676 55.000 0.00 0.00 41.52 3.02
5434 5812 1.061546 AGGGGCTTCCGTTACTTGAA 58.938 50.000 0.00 0.00 41.52 2.69
5435 5813 1.633945 AGGGGCTTCCGTTACTTGAAT 59.366 47.619 0.00 0.00 41.52 2.57
5436 5814 2.841881 AGGGGCTTCCGTTACTTGAATA 59.158 45.455 0.00 0.00 41.52 1.75
5437 5815 2.941064 GGGGCTTCCGTTACTTGAATAC 59.059 50.000 0.00 0.00 0.00 1.89
5438 5816 3.370209 GGGGCTTCCGTTACTTGAATACT 60.370 47.826 0.00 0.00 0.00 2.12
5439 5817 4.259356 GGGCTTCCGTTACTTGAATACTT 58.741 43.478 0.00 0.00 0.00 2.24
5440 5818 5.422145 GGGCTTCCGTTACTTGAATACTTA 58.578 41.667 0.00 0.00 0.00 2.24
5441 5819 6.053650 GGGCTTCCGTTACTTGAATACTTAT 58.946 40.000 0.00 0.00 0.00 1.73
5442 5820 6.541278 GGGCTTCCGTTACTTGAATACTTATT 59.459 38.462 0.00 0.00 0.00 1.40
5443 5821 7.066645 GGGCTTCCGTTACTTGAATACTTATTT 59.933 37.037 0.00 0.00 0.00 1.40
5444 5822 8.456471 GGCTTCCGTTACTTGAATACTTATTTT 58.544 33.333 0.00 0.00 0.00 1.82
5445 5823 9.836076 GCTTCCGTTACTTGAATACTTATTTTT 57.164 29.630 0.00 0.00 0.00 1.94
5447 5825 9.615295 TTCCGTTACTTGAATACTTATTTTTGC 57.385 29.630 0.00 0.00 0.00 3.68
5448 5826 7.958567 TCCGTTACTTGAATACTTATTTTTGCG 59.041 33.333 0.00 0.00 0.00 4.85
5449 5827 7.217447 CCGTTACTTGAATACTTATTTTTGCGG 59.783 37.037 0.00 0.00 0.00 5.69
5450 5828 7.217447 CGTTACTTGAATACTTATTTTTGCGGG 59.783 37.037 0.00 0.00 0.00 6.13
5451 5829 6.584185 ACTTGAATACTTATTTTTGCGGGT 57.416 33.333 0.00 0.00 0.00 5.28
5452 5830 7.690952 ACTTGAATACTTATTTTTGCGGGTA 57.309 32.000 0.00 0.00 0.00 3.69
5453 5831 7.532571 ACTTGAATACTTATTTTTGCGGGTAC 58.467 34.615 0.00 0.00 0.00 3.34
5471 5849 5.723295 GGGTACCGTTACTTGAATACTTGA 58.277 41.667 5.65 0.00 40.86 3.02
5472 5850 6.343703 GGGTACCGTTACTTGAATACTTGAT 58.656 40.000 5.65 0.00 40.86 2.57
5473 5851 6.257193 GGGTACCGTTACTTGAATACTTGATG 59.743 42.308 5.65 0.00 40.86 3.07
5474 5852 7.037438 GGTACCGTTACTTGAATACTTGATGA 58.963 38.462 0.00 0.00 0.00 2.92
5475 5853 7.222224 GGTACCGTTACTTGAATACTTGATGAG 59.778 40.741 0.00 0.00 0.00 2.90
5476 5854 6.931838 ACCGTTACTTGAATACTTGATGAGA 58.068 36.000 0.00 0.00 0.00 3.27
5477 5855 7.036220 ACCGTTACTTGAATACTTGATGAGAG 58.964 38.462 0.00 0.00 0.00 3.20
5478 5856 7.093902 ACCGTTACTTGAATACTTGATGAGAGA 60.094 37.037 0.00 0.00 0.00 3.10
5479 5857 7.923344 CCGTTACTTGAATACTTGATGAGAGAT 59.077 37.037 0.00 0.00 0.00 2.75
5480 5858 8.963130 CGTTACTTGAATACTTGATGAGAGATC 58.037 37.037 0.00 0.00 0.00 2.75
5484 5862 9.381033 ACTTGAATACTTGATGAGAGATCTTTG 57.619 33.333 0.00 0.00 0.00 2.77
5485 5863 9.381033 CTTGAATACTTGATGAGAGATCTTTGT 57.619 33.333 0.00 0.00 0.00 2.83
5486 5864 8.713737 TGAATACTTGATGAGAGATCTTTGTG 57.286 34.615 0.00 0.00 0.00 3.33
5487 5865 7.767659 TGAATACTTGATGAGAGATCTTTGTGG 59.232 37.037 0.00 0.00 0.00 4.17
5488 5866 4.260170 ACTTGATGAGAGATCTTTGTGGC 58.740 43.478 0.00 0.00 0.00 5.01
5489 5867 4.019501 ACTTGATGAGAGATCTTTGTGGCT 60.020 41.667 0.00 0.00 0.00 4.75
5490 5868 4.564782 TGATGAGAGATCTTTGTGGCTT 57.435 40.909 0.00 0.00 0.00 4.35
5491 5869 4.259356 TGATGAGAGATCTTTGTGGCTTG 58.741 43.478 0.00 0.00 0.00 4.01
5492 5870 3.777106 TGAGAGATCTTTGTGGCTTGT 57.223 42.857 0.00 0.00 0.00 3.16
5493 5871 4.090761 TGAGAGATCTTTGTGGCTTGTT 57.909 40.909 0.00 0.00 0.00 2.83
5494 5872 4.464008 TGAGAGATCTTTGTGGCTTGTTT 58.536 39.130 0.00 0.00 0.00 2.83
5495 5873 4.276678 TGAGAGATCTTTGTGGCTTGTTTG 59.723 41.667 0.00 0.00 0.00 2.93
5496 5874 3.571401 AGAGATCTTTGTGGCTTGTTTGG 59.429 43.478 0.00 0.00 0.00 3.28
5497 5875 3.565307 AGATCTTTGTGGCTTGTTTGGA 58.435 40.909 0.00 0.00 0.00 3.53
5498 5876 3.960102 AGATCTTTGTGGCTTGTTTGGAA 59.040 39.130 0.00 0.00 0.00 3.53
5499 5877 4.590222 AGATCTTTGTGGCTTGTTTGGAAT 59.410 37.500 0.00 0.00 0.00 3.01
5500 5878 4.751767 TCTTTGTGGCTTGTTTGGAATT 57.248 36.364 0.00 0.00 0.00 2.17
5501 5879 4.692228 TCTTTGTGGCTTGTTTGGAATTC 58.308 39.130 0.00 0.00 0.00 2.17
5502 5880 4.161189 TCTTTGTGGCTTGTTTGGAATTCA 59.839 37.500 7.93 0.00 0.00 2.57
5503 5881 3.731652 TGTGGCTTGTTTGGAATTCAG 57.268 42.857 7.93 0.00 0.00 3.02
5504 5882 2.364970 TGTGGCTTGTTTGGAATTCAGG 59.635 45.455 7.93 0.00 0.00 3.86
5505 5883 2.627699 GTGGCTTGTTTGGAATTCAGGA 59.372 45.455 7.93 0.00 0.00 3.86
5506 5884 3.259123 GTGGCTTGTTTGGAATTCAGGAT 59.741 43.478 7.93 0.00 0.00 3.24
5507 5885 3.903090 TGGCTTGTTTGGAATTCAGGATT 59.097 39.130 7.93 0.00 0.00 3.01
5508 5886 5.047377 GTGGCTTGTTTGGAATTCAGGATTA 60.047 40.000 7.93 0.00 0.00 1.75
5509 5887 5.721000 TGGCTTGTTTGGAATTCAGGATTAT 59.279 36.000 7.93 0.00 0.00 1.28
5510 5888 6.044682 GGCTTGTTTGGAATTCAGGATTATG 58.955 40.000 7.93 0.00 0.00 1.90
5511 5889 6.127366 GGCTTGTTTGGAATTCAGGATTATGA 60.127 38.462 7.93 0.00 0.00 2.15
5512 5890 7.322664 GCTTGTTTGGAATTCAGGATTATGAA 58.677 34.615 7.93 0.00 43.04 2.57
5513 5891 7.818930 GCTTGTTTGGAATTCAGGATTATGAAA 59.181 33.333 7.93 0.00 42.21 2.69
5514 5892 9.709495 CTTGTTTGGAATTCAGGATTATGAAAA 57.291 29.630 7.93 0.00 42.21 2.29
5515 5893 9.487790 TTGTTTGGAATTCAGGATTATGAAAAC 57.512 29.630 7.93 3.19 42.21 2.43
5516 5894 8.869109 TGTTTGGAATTCAGGATTATGAAAACT 58.131 29.630 7.93 0.00 42.21 2.66
5517 5895 9.710900 GTTTGGAATTCAGGATTATGAAAACTT 57.289 29.630 7.93 0.00 42.21 2.66
5518 5896 9.709495 TTTGGAATTCAGGATTATGAAAACTTG 57.291 29.630 7.93 0.00 42.21 3.16
5519 5897 7.839907 TGGAATTCAGGATTATGAAAACTTGG 58.160 34.615 7.93 0.00 42.21 3.61
5520 5898 6.758416 GGAATTCAGGATTATGAAAACTTGGC 59.242 38.462 7.93 0.00 42.21 4.52
5521 5899 6.855763 ATTCAGGATTATGAAAACTTGGCA 57.144 33.333 0.00 0.00 42.21 4.92
5522 5900 6.855763 TTCAGGATTATGAAAACTTGGCAT 57.144 33.333 0.00 0.00 36.28 4.40
5523 5901 6.211587 TCAGGATTATGAAAACTTGGCATG 57.788 37.500 0.00 0.00 0.00 4.06
5524 5902 5.951148 TCAGGATTATGAAAACTTGGCATGA 59.049 36.000 7.45 0.00 0.00 3.07
5525 5903 6.038356 CAGGATTATGAAAACTTGGCATGAC 58.962 40.000 7.45 0.00 0.00 3.06
5526 5904 5.716228 AGGATTATGAAAACTTGGCATGACA 59.284 36.000 0.00 0.00 0.00 3.58
5527 5905 6.211184 AGGATTATGAAAACTTGGCATGACAA 59.789 34.615 14.66 14.66 0.00 3.18
5528 5906 7.043565 GGATTATGAAAACTTGGCATGACAAT 58.956 34.615 15.95 0.00 0.00 2.71
5529 5907 7.550196 GGATTATGAAAACTTGGCATGACAATT 59.450 33.333 15.95 6.34 0.00 2.32
5530 5908 8.851541 ATTATGAAAACTTGGCATGACAATTT 57.148 26.923 15.95 13.17 0.00 1.82
5531 5909 5.987777 TGAAAACTTGGCATGACAATTTG 57.012 34.783 15.95 5.91 0.00 2.32
5532 5910 5.426504 TGAAAACTTGGCATGACAATTTGT 58.573 33.333 15.95 10.93 0.00 2.83
5533 5911 5.879223 TGAAAACTTGGCATGACAATTTGTT 59.121 32.000 15.95 12.87 0.00 2.83
5534 5912 5.738118 AAACTTGGCATGACAATTTGTTG 57.262 34.783 15.95 4.28 0.00 3.33
5535 5913 4.405116 ACTTGGCATGACAATTTGTTGT 57.595 36.364 15.95 5.00 37.97 3.32
5547 5925 7.629027 GACAATTTGTTGTCCTCTGAAAATC 57.371 36.000 3.08 0.00 44.06 2.17
5548 5926 6.515832 ACAATTTGTTGTCCTCTGAAAATCC 58.484 36.000 0.00 0.00 0.00 3.01
5549 5927 6.324770 ACAATTTGTTGTCCTCTGAAAATCCT 59.675 34.615 0.00 0.00 0.00 3.24
5550 5928 6.983906 ATTTGTTGTCCTCTGAAAATCCTT 57.016 33.333 0.00 0.00 0.00 3.36
5551 5929 6.790232 TTTGTTGTCCTCTGAAAATCCTTT 57.210 33.333 0.00 0.00 0.00 3.11
5552 5930 5.772825 TGTTGTCCTCTGAAAATCCTTTG 57.227 39.130 0.00 0.00 0.00 2.77
5553 5931 4.584325 TGTTGTCCTCTGAAAATCCTTTGG 59.416 41.667 0.00 0.00 0.00 3.28
5554 5932 4.453480 TGTCCTCTGAAAATCCTTTGGT 57.547 40.909 0.00 0.00 0.00 3.67
5555 5933 4.144297 TGTCCTCTGAAAATCCTTTGGTG 58.856 43.478 0.00 0.00 0.00 4.17
5556 5934 3.057245 GTCCTCTGAAAATCCTTTGGTGC 60.057 47.826 0.00 0.00 0.00 5.01
5557 5935 2.095059 CCTCTGAAAATCCTTTGGTGCG 60.095 50.000 0.00 0.00 0.00 5.34
5558 5936 2.813754 CTCTGAAAATCCTTTGGTGCGA 59.186 45.455 0.00 0.00 0.00 5.10
5559 5937 3.218453 TCTGAAAATCCTTTGGTGCGAA 58.782 40.909 0.00 0.00 0.00 4.70
5560 5938 3.004315 TCTGAAAATCCTTTGGTGCGAAC 59.996 43.478 0.00 0.00 0.00 3.95
5561 5939 2.955660 TGAAAATCCTTTGGTGCGAACT 59.044 40.909 0.00 0.00 0.00 3.01
5562 5940 3.383185 TGAAAATCCTTTGGTGCGAACTT 59.617 39.130 0.00 0.00 0.00 2.66
5563 5941 4.580995 TGAAAATCCTTTGGTGCGAACTTA 59.419 37.500 0.00 0.00 0.00 2.24
5564 5942 5.067936 TGAAAATCCTTTGGTGCGAACTTAA 59.932 36.000 0.00 0.00 0.00 1.85
5565 5943 5.722021 AAATCCTTTGGTGCGAACTTAAT 57.278 34.783 0.00 0.00 0.00 1.40
5566 5944 5.722021 AATCCTTTGGTGCGAACTTAATT 57.278 34.783 0.00 0.00 0.00 1.40
5567 5945 5.722021 ATCCTTTGGTGCGAACTTAATTT 57.278 34.783 0.00 0.00 0.00 1.82
5568 5946 5.523438 TCCTTTGGTGCGAACTTAATTTT 57.477 34.783 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 2.600173 TTTGCTTGCTTCCCCCGG 60.600 61.111 0.00 0.00 0.00 5.73
14 15 0.854705 CAAACGCCTTTGCTTGCTTC 59.145 50.000 0.00 0.00 30.64 3.86
15 16 2.976271 CAAACGCCTTTGCTTGCTT 58.024 47.368 0.00 0.00 30.64 3.91
16 17 4.736165 CAAACGCCTTTGCTTGCT 57.264 50.000 0.00 0.00 30.64 3.91
24 25 1.656441 CAAGCAGAGCAAACGCCTT 59.344 52.632 0.00 0.00 0.00 4.35
39 40 1.444895 GCCGGCTTGATTGTGCAAG 60.445 57.895 22.15 0.00 46.18 4.01
44 45 0.519961 GTTTACGCCGGCTTGATTGT 59.480 50.000 26.68 16.25 0.00 2.71
95 96 0.541392 CGAGGTGGATCCATGGTCAA 59.459 55.000 19.62 0.00 39.02 3.18
96 97 0.325203 TCGAGGTGGATCCATGGTCA 60.325 55.000 19.62 6.37 39.02 4.02
100 107 2.988010 TTTCTCGAGGTGGATCCATG 57.012 50.000 19.62 8.74 39.02 3.66
457 500 2.283894 TTCTGCTCCCTCTGGCGA 60.284 61.111 0.00 0.00 0.00 5.54
685 745 5.127845 TCCTCTTTTACTATGCTCACCTCAG 59.872 44.000 0.00 0.00 0.00 3.35
716 776 3.027675 GCCCACCTCCCCGAACTAC 62.028 68.421 0.00 0.00 0.00 2.73
765 829 2.179427 GTGGAAGAAATGGAAAGGGGG 58.821 52.381 0.00 0.00 0.00 5.40
798 862 2.202236 GAGGCAGAGGCATTGTGGGA 62.202 60.000 0.00 0.00 43.71 4.37
809 881 4.787280 AGACCGGGGGAGGCAGAG 62.787 72.222 6.32 0.00 33.69 3.35
810 882 4.779733 GAGACCGGGGGAGGCAGA 62.780 72.222 6.32 0.00 33.69 4.26
980 1055 0.663269 GGCGCCCGAAAAGAAAACAG 60.663 55.000 18.11 0.00 0.00 3.16
1013 1088 1.458639 AAGAAGCAACCAGGCAGCAC 61.459 55.000 6.50 0.83 35.83 4.40
1018 1093 0.884514 GGAAGAAGAAGCAACCAGGC 59.115 55.000 0.00 0.00 0.00 4.85
1019 1094 2.555757 CAAGGAAGAAGAAGCAACCAGG 59.444 50.000 0.00 0.00 0.00 4.45
1020 1095 3.217626 ACAAGGAAGAAGAAGCAACCAG 58.782 45.455 0.00 0.00 0.00 4.00
1061 1136 1.165907 TCTGCCGCACCTCAAACTTG 61.166 55.000 0.00 0.00 0.00 3.16
1092 1167 4.821589 CTCGCCCAACTCCTCCGC 62.822 72.222 0.00 0.00 0.00 5.54
1137 1212 1.459592 GATCAGACACCAACCGAAACG 59.540 52.381 0.00 0.00 0.00 3.60
1163 1238 1.202143 CGGGCAGCGAAAATAAAGACC 60.202 52.381 0.00 0.00 0.00 3.85
1166 1241 3.108144 CAATCGGGCAGCGAAAATAAAG 58.892 45.455 0.00 0.00 0.00 1.85
1267 1342 7.334171 CCAGGACATAATCGTGCATCATAAATA 59.666 37.037 0.00 0.00 41.10 1.40
1292 1367 6.100668 GGAGATTTGATACGATTAGCTACCC 58.899 44.000 0.00 0.00 0.00 3.69
1359 1436 9.948964 AATTCTAAGCTTGCCAAAATCTTTAAT 57.051 25.926 9.86 0.00 0.00 1.40
1374 1451 5.221843 TGACCACCTACACAATTCTAAGCTT 60.222 40.000 3.48 3.48 0.00 3.74
1387 1464 3.495453 GGTTTGTAAGCTGACCACCTACA 60.495 47.826 11.17 0.96 32.41 2.74
1388 1465 3.072211 GGTTTGTAAGCTGACCACCTAC 58.928 50.000 11.17 0.00 32.41 3.18
1390 1467 1.774856 AGGTTTGTAAGCTGACCACCT 59.225 47.619 14.27 14.27 37.93 4.00
1393 1470 2.171659 TGTGAGGTTTGTAAGCTGACCA 59.828 45.455 0.00 0.00 41.48 4.02
1398 1475 1.202651 ACGCTGTGAGGTTTGTAAGCT 60.203 47.619 0.00 0.00 42.93 3.74
1417 1494 5.814705 AGCATACTGACAGAAAATCAGCTAC 59.185 40.000 10.08 0.00 46.33 3.58
1418 1495 5.982356 AGCATACTGACAGAAAATCAGCTA 58.018 37.500 10.08 0.00 46.33 3.32
1419 1496 4.841422 AGCATACTGACAGAAAATCAGCT 58.159 39.130 10.08 5.60 46.33 4.24
1438 1537 5.044558 GGTTTTGACACCGAAAATAAAGCA 58.955 37.500 0.00 0.00 0.00 3.91
1468 1567 4.542735 CGGCGTAAAAACCTGAAAGAAAT 58.457 39.130 0.00 0.00 34.07 2.17
1487 1586 1.656652 TCTCTAATGAAGCAAGCGGC 58.343 50.000 0.00 0.00 45.30 6.53
1489 1588 2.923655 TCGTTCTCTAATGAAGCAAGCG 59.076 45.455 0.00 0.00 0.00 4.68
1592 1691 5.230182 GCCAGAAAAATCCAAGGTTTACAG 58.770 41.667 0.00 0.00 0.00 2.74
1593 1692 4.039852 GGCCAGAAAAATCCAAGGTTTACA 59.960 41.667 0.00 0.00 0.00 2.41
1620 1723 8.361592 TCTAAAGAAACGTTAGAAGGTGAAAG 57.638 34.615 0.00 0.00 35.22 2.62
1624 1727 7.884816 TCATCTAAAGAAACGTTAGAAGGTG 57.115 36.000 0.00 2.28 40.15 4.00
1625 1728 9.503399 AAATCATCTAAAGAAACGTTAGAAGGT 57.497 29.630 0.00 0.00 40.15 3.50
1627 1730 9.974750 GGAAATCATCTAAAGAAACGTTAGAAG 57.025 33.333 0.00 0.00 40.15 2.85
1629 1732 8.932791 GTGGAAATCATCTAAAGAAACGTTAGA 58.067 33.333 0.00 0.00 40.81 2.10
1631 1734 7.120138 GGGTGGAAATCATCTAAAGAAACGTTA 59.880 37.037 0.00 0.00 0.00 3.18
1632 1735 6.072119 GGGTGGAAATCATCTAAAGAAACGTT 60.072 38.462 0.00 0.00 0.00 3.99
1633 1736 5.414765 GGGTGGAAATCATCTAAAGAAACGT 59.585 40.000 0.00 0.00 0.00 3.99
1634 1737 5.163652 GGGGTGGAAATCATCTAAAGAAACG 60.164 44.000 0.00 0.00 0.00 3.60
1635 1738 5.952347 AGGGGTGGAAATCATCTAAAGAAAC 59.048 40.000 0.00 0.00 0.00 2.78
1637 1740 5.796502 AGGGGTGGAAATCATCTAAAGAA 57.203 39.130 0.00 0.00 0.00 2.52
1638 1741 5.492524 AGAAGGGGTGGAAATCATCTAAAGA 59.507 40.000 0.00 0.00 0.00 2.52
1639 1742 5.760131 AGAAGGGGTGGAAATCATCTAAAG 58.240 41.667 0.00 0.00 0.00 1.85
1652 1758 2.305927 ACACAACTGATAGAAGGGGTGG 59.694 50.000 0.00 0.00 32.66 4.61
1653 1759 3.703001 ACACAACTGATAGAAGGGGTG 57.297 47.619 0.00 0.00 33.84 4.61
1654 1760 3.910627 AGAACACAACTGATAGAAGGGGT 59.089 43.478 0.00 0.00 0.00 4.95
1655 1761 4.020218 TCAGAACACAACTGATAGAAGGGG 60.020 45.833 0.00 0.00 39.10 4.79
1697 1803 3.646162 TCTGCACCTTCTTCTTCACCTTA 59.354 43.478 0.00 0.00 0.00 2.69
1725 1831 5.186797 CCCTTTCTTTGCCATAATTGGTGTA 59.813 40.000 0.00 0.00 45.57 2.90
1733 1839 3.831911 CCACTTCCCTTTCTTTGCCATAA 59.168 43.478 0.00 0.00 0.00 1.90
1836 1943 9.979578 TGCAAAATTTAAGTCAAATGTGTAGAT 57.020 25.926 0.00 0.00 36.93 1.98
1837 1944 9.979578 ATGCAAAATTTAAGTCAAATGTGTAGA 57.020 25.926 0.00 0.00 36.93 2.59
1840 1947 9.719279 CAAATGCAAAATTTAAGTCAAATGTGT 57.281 25.926 0.00 0.00 36.93 3.72
1841 1948 8.683774 GCAAATGCAAAATTTAAGTCAAATGTG 58.316 29.630 0.00 0.00 41.59 3.21
1845 1952 6.545298 AGGGCAAATGCAAAATTTAAGTCAAA 59.455 30.769 7.80 0.00 44.36 2.69
1864 1971 3.439857 AGCTACTGAAAATGAGGGCAA 57.560 42.857 0.00 0.00 0.00 4.52
1874 1981 4.261994 GGTTGAAATGGCAAGCTACTGAAA 60.262 41.667 0.00 0.00 41.64 2.69
1887 1994 6.670233 CCAAATGTCAAAATGGTTGAAATGG 58.330 36.000 0.00 0.00 0.00 3.16
2321 2429 3.500982 CAATAAACATCCCGCAAGTGTG 58.499 45.455 0.00 0.00 0.00 3.82
2397 2505 2.378038 ACCAATCGCAGCATATGGTTT 58.622 42.857 4.25 0.00 41.47 3.27
2471 2591 9.991906 TCAGGTATCTTAAAGGGTATTAATTCG 57.008 33.333 0.00 0.00 0.00 3.34
2639 2764 4.986659 TCAGCTGTCATATCATCATTCACG 59.013 41.667 14.67 0.00 0.00 4.35
2750 2879 2.622942 ACTCGATGCCACACAAAAACAT 59.377 40.909 0.00 0.00 0.00 2.71
2902 3032 0.386113 GGGCAGTTTGGCGTTTAACA 59.614 50.000 0.00 0.00 44.78 2.41
2905 3035 0.752009 TGTGGGCAGTTTGGCGTTTA 60.752 50.000 0.00 0.00 44.78 2.01
2950 3080 6.234177 AGAGTAGATTTGGGTTTGAACTCTG 58.766 40.000 0.00 0.00 40.55 3.35
3194 3387 2.145397 ATAGAGCGGAGAACTGTCCA 57.855 50.000 0.00 0.00 36.23 4.02
3243 3533 6.809689 TCAATGTGAGTGGTACGTTAATACTG 59.190 38.462 0.00 0.00 0.00 2.74
3244 3534 6.927416 TCAATGTGAGTGGTACGTTAATACT 58.073 36.000 0.00 0.00 0.00 2.12
3245 3535 7.543172 TCTTCAATGTGAGTGGTACGTTAATAC 59.457 37.037 0.00 0.00 0.00 1.89
3246 3536 7.604549 TCTTCAATGTGAGTGGTACGTTAATA 58.395 34.615 0.00 0.00 0.00 0.98
3247 3537 6.460781 TCTTCAATGTGAGTGGTACGTTAAT 58.539 36.000 0.00 0.00 0.00 1.40
3248 3538 5.845103 TCTTCAATGTGAGTGGTACGTTAA 58.155 37.500 0.00 0.00 0.00 2.01
3249 3539 5.456548 TCTTCAATGTGAGTGGTACGTTA 57.543 39.130 0.00 0.00 0.00 3.18
3253 3543 5.992217 ACTCTTTCTTCAATGTGAGTGGTAC 59.008 40.000 0.00 0.00 34.09 3.34
3325 3615 8.446273 CAAGAAAGTTGGACTGTACTCAATATG 58.554 37.037 0.00 0.00 0.00 1.78
3338 3664 3.569701 TCAATCTGCCAAGAAAGTTGGAC 59.430 43.478 7.99 0.40 42.06 4.02
3669 4003 2.690936 GCTCCAGCCCCAATTAGGATTT 60.691 50.000 0.00 0.00 35.36 2.17
3768 4102 2.500098 AGCGTTAGTGCTGGGATTCTTA 59.500 45.455 0.00 0.00 45.28 2.10
3946 4280 4.901849 CCTCAAGTCATCCTCCCTGTATAA 59.098 45.833 0.00 0.00 0.00 0.98
4319 4659 2.680913 GCAGCGCCTGACGTTCATT 61.681 57.895 2.29 0.00 46.11 2.57
4337 4678 3.257393 GCGATCTAGCAATCATAGGTGG 58.743 50.000 0.00 0.00 37.05 4.61
4406 4747 0.841289 TTTCACGGAGGGTTCAACCT 59.159 50.000 6.51 0.00 45.57 3.50
4646 4987 6.112734 TCAGTAATTCCGCATGTCTTACATT 58.887 36.000 0.00 0.00 36.53 2.71
4659 5009 7.041848 TGCATATCTCAACATTCAGTAATTCCG 60.042 37.037 0.00 0.00 0.00 4.30
4660 5010 8.158169 TGCATATCTCAACATTCAGTAATTCC 57.842 34.615 0.00 0.00 0.00 3.01
4661 5011 9.608617 CATGCATATCTCAACATTCAGTAATTC 57.391 33.333 0.00 0.00 0.00 2.17
4666 5016 5.884232 ACACATGCATATCTCAACATTCAGT 59.116 36.000 0.00 0.00 0.00 3.41
4671 5021 6.183360 CCAAGAACACATGCATATCTCAACAT 60.183 38.462 0.00 0.00 0.00 2.71
4673 5023 5.124457 ACCAAGAACACATGCATATCTCAAC 59.876 40.000 0.00 0.00 0.00 3.18
4696 5046 7.273381 GTGATTCAGTTGCCATAACATACAAAC 59.727 37.037 0.00 0.00 0.00 2.93
4698 5048 6.658816 AGTGATTCAGTTGCCATAACATACAA 59.341 34.615 0.00 0.00 0.00 2.41
4731 5084 1.379843 GACCCCAATCGGCACCATT 60.380 57.895 0.00 0.00 0.00 3.16
4735 5088 2.438434 CAGGACCCCAATCGGCAC 60.438 66.667 0.00 0.00 0.00 5.01
4741 5094 4.788617 AGTACATAAACTCAGGACCCCAAT 59.211 41.667 0.00 0.00 0.00 3.16
4746 5099 5.161943 ACCAAGTACATAAACTCAGGACC 57.838 43.478 0.00 0.00 32.05 4.46
4747 5100 6.694447 TGTACCAAGTACATAAACTCAGGAC 58.306 40.000 3.51 0.00 42.99 3.85
4782 5135 3.796844 GCAAGCCAACTGAGGAAAACTTC 60.797 47.826 0.00 0.00 0.00 3.01
4783 5136 2.101415 GCAAGCCAACTGAGGAAAACTT 59.899 45.455 0.00 0.00 0.00 2.66
4790 5145 0.313043 CAAGTGCAAGCCAACTGAGG 59.687 55.000 0.00 0.00 0.00 3.86
4792 5147 0.752743 AGCAAGTGCAAGCCAACTGA 60.753 50.000 6.00 0.00 45.16 3.41
4826 5181 4.513442 TGCCAATTGTAGTAGCGAAGAAT 58.487 39.130 4.43 0.00 0.00 2.40
4841 5204 2.818921 TCAGTAGCCCAAATGCCAATT 58.181 42.857 0.00 0.00 0.00 2.32
4852 5215 7.602265 TGCAAAAATTAAAAGAATCAGTAGCCC 59.398 33.333 0.00 0.00 0.00 5.19
4871 5234 5.010012 ACCAAAAACCACAATGTTGCAAAAA 59.990 32.000 0.00 0.00 0.00 1.94
4872 5235 4.520492 ACCAAAAACCACAATGTTGCAAAA 59.480 33.333 0.00 0.00 0.00 2.44
4873 5236 4.074970 ACCAAAAACCACAATGTTGCAAA 58.925 34.783 0.00 0.00 0.00 3.68
4874 5237 3.679389 ACCAAAAACCACAATGTTGCAA 58.321 36.364 0.00 0.00 0.00 4.08
4875 5238 3.340814 ACCAAAAACCACAATGTTGCA 57.659 38.095 0.00 0.00 0.00 4.08
4876 5239 4.693538 AAACCAAAAACCACAATGTTGC 57.306 36.364 0.00 0.00 0.00 4.17
4890 5253 3.193691 TCTCAGCCGTTTCAAAAACCAAA 59.806 39.130 0.00 0.00 0.00 3.28
4891 5254 2.755655 TCTCAGCCGTTTCAAAAACCAA 59.244 40.909 0.00 0.00 0.00 3.67
4892 5255 2.370349 TCTCAGCCGTTTCAAAAACCA 58.630 42.857 0.00 0.00 0.00 3.67
4893 5256 3.066203 TCTTCTCAGCCGTTTCAAAAACC 59.934 43.478 0.00 0.00 0.00 3.27
4894 5257 4.287238 TCTTCTCAGCCGTTTCAAAAAC 57.713 40.909 0.00 0.00 0.00 2.43
4895 5258 4.974368 TTCTTCTCAGCCGTTTCAAAAA 57.026 36.364 0.00 0.00 0.00 1.94
4896 5259 4.668289 GTTTCTTCTCAGCCGTTTCAAAA 58.332 39.130 0.00 0.00 0.00 2.44
4897 5260 3.242608 CGTTTCTTCTCAGCCGTTTCAAA 60.243 43.478 0.00 0.00 0.00 2.69
4898 5261 2.286833 CGTTTCTTCTCAGCCGTTTCAA 59.713 45.455 0.00 0.00 0.00 2.69
4899 5262 1.864711 CGTTTCTTCTCAGCCGTTTCA 59.135 47.619 0.00 0.00 0.00 2.69
4900 5263 2.096860 GTCGTTTCTTCTCAGCCGTTTC 60.097 50.000 0.00 0.00 0.00 2.78
4901 5264 1.865340 GTCGTTTCTTCTCAGCCGTTT 59.135 47.619 0.00 0.00 0.00 3.60
4902 5265 1.499049 GTCGTTTCTTCTCAGCCGTT 58.501 50.000 0.00 0.00 0.00 4.44
4903 5266 0.319641 GGTCGTTTCTTCTCAGCCGT 60.320 55.000 0.00 0.00 0.00 5.68
4904 5267 0.038159 AGGTCGTTTCTTCTCAGCCG 60.038 55.000 0.00 0.00 0.00 5.52
4908 5271 3.323691 TGAATCCAGGTCGTTTCTTCTCA 59.676 43.478 0.00 0.00 0.00 3.27
4911 5274 3.665190 ACTGAATCCAGGTCGTTTCTTC 58.335 45.455 0.00 0.00 44.60 2.87
4918 5281 3.328382 TTGGTAACTGAATCCAGGTCG 57.672 47.619 0.00 0.00 44.60 4.79
4938 5301 3.440173 CGTAATCCTGTTGCAACCTGATT 59.560 43.478 30.28 30.28 34.56 2.57
4959 5322 1.075542 TGGTTAGCAATCACGCTTCG 58.924 50.000 0.00 0.00 43.56 3.79
4999 5364 1.318576 AACGTTCCTTTTCAGCCCAG 58.681 50.000 0.00 0.00 0.00 4.45
5061 5432 0.872881 CATTGCCTAAATGCAGCGGC 60.873 55.000 0.31 0.31 43.21 6.53
5144 5522 4.084380 GGTACCTTTGAAGAAACGTTACGG 60.084 45.833 10.20 0.00 0.00 4.02
5178 5556 5.596361 TGGTACCACCATATAAAAATGCTGG 59.404 40.000 11.60 0.00 44.79 4.85
5197 5575 4.612033 GCGTTTTGATGTTGGTAGTGGTAC 60.612 45.833 0.00 0.00 0.00 3.34
5198 5576 3.499157 GCGTTTTGATGTTGGTAGTGGTA 59.501 43.478 0.00 0.00 0.00 3.25
5199 5577 2.292292 GCGTTTTGATGTTGGTAGTGGT 59.708 45.455 0.00 0.00 0.00 4.16
5200 5578 2.351350 GGCGTTTTGATGTTGGTAGTGG 60.351 50.000 0.00 0.00 0.00 4.00
5201 5579 2.351350 GGGCGTTTTGATGTTGGTAGTG 60.351 50.000 0.00 0.00 0.00 2.74
5202 5580 1.883926 GGGCGTTTTGATGTTGGTAGT 59.116 47.619 0.00 0.00 0.00 2.73
5203 5581 1.201414 GGGGCGTTTTGATGTTGGTAG 59.799 52.381 0.00 0.00 0.00 3.18
5204 5582 1.202952 AGGGGCGTTTTGATGTTGGTA 60.203 47.619 0.00 0.00 0.00 3.25
5205 5583 0.469144 AGGGGCGTTTTGATGTTGGT 60.469 50.000 0.00 0.00 0.00 3.67
5206 5584 0.243636 GAGGGGCGTTTTGATGTTGG 59.756 55.000 0.00 0.00 0.00 3.77
5207 5585 0.243636 GGAGGGGCGTTTTGATGTTG 59.756 55.000 0.00 0.00 0.00 3.33
5208 5586 0.898326 GGGAGGGGCGTTTTGATGTT 60.898 55.000 0.00 0.00 0.00 2.71
5209 5587 1.304134 GGGAGGGGCGTTTTGATGT 60.304 57.895 0.00 0.00 0.00 3.06
5210 5588 0.254747 TAGGGAGGGGCGTTTTGATG 59.745 55.000 0.00 0.00 0.00 3.07
5211 5589 0.255033 GTAGGGAGGGGCGTTTTGAT 59.745 55.000 0.00 0.00 0.00 2.57
5212 5590 0.838987 AGTAGGGAGGGGCGTTTTGA 60.839 55.000 0.00 0.00 0.00 2.69
5213 5591 0.037734 AAGTAGGGAGGGGCGTTTTG 59.962 55.000 0.00 0.00 0.00 2.44
5214 5592 0.037734 CAAGTAGGGAGGGGCGTTTT 59.962 55.000 0.00 0.00 0.00 2.43
5215 5593 1.683441 CAAGTAGGGAGGGGCGTTT 59.317 57.895 0.00 0.00 0.00 3.60
5216 5594 2.967946 GCAAGTAGGGAGGGGCGTT 61.968 63.158 0.00 0.00 0.00 4.84
5217 5595 3.400054 GCAAGTAGGGAGGGGCGT 61.400 66.667 0.00 0.00 0.00 5.68
5218 5596 3.083997 AGCAAGTAGGGAGGGGCG 61.084 66.667 0.00 0.00 0.00 6.13
5219 5597 1.853250 AACAGCAAGTAGGGAGGGGC 61.853 60.000 0.00 0.00 0.00 5.80
5220 5598 0.035056 CAACAGCAAGTAGGGAGGGG 60.035 60.000 0.00 0.00 0.00 4.79
5221 5599 0.035056 CCAACAGCAAGTAGGGAGGG 60.035 60.000 0.00 0.00 0.00 4.30
5222 5600 0.693049 ACCAACAGCAAGTAGGGAGG 59.307 55.000 6.86 0.00 0.00 4.30
5223 5601 3.197766 TCATACCAACAGCAAGTAGGGAG 59.802 47.826 6.86 0.00 0.00 4.30
5224 5602 3.055385 GTCATACCAACAGCAAGTAGGGA 60.055 47.826 6.86 0.00 0.00 4.20
5225 5603 3.055094 AGTCATACCAACAGCAAGTAGGG 60.055 47.826 0.00 0.00 0.00 3.53
5226 5604 4.207891 AGTCATACCAACAGCAAGTAGG 57.792 45.455 0.00 0.00 0.00 3.18
5227 5605 4.393062 CCAAGTCATACCAACAGCAAGTAG 59.607 45.833 0.00 0.00 0.00 2.57
5228 5606 4.202419 ACCAAGTCATACCAACAGCAAGTA 60.202 41.667 0.00 0.00 0.00 2.24
5229 5607 3.149196 CCAAGTCATACCAACAGCAAGT 58.851 45.455 0.00 0.00 0.00 3.16
5230 5608 3.149196 ACCAAGTCATACCAACAGCAAG 58.851 45.455 0.00 0.00 0.00 4.01
5231 5609 3.222173 ACCAAGTCATACCAACAGCAA 57.778 42.857 0.00 0.00 0.00 3.91
5232 5610 2.884012 CAACCAAGTCATACCAACAGCA 59.116 45.455 0.00 0.00 0.00 4.41
5233 5611 2.351738 GCAACCAAGTCATACCAACAGC 60.352 50.000 0.00 0.00 0.00 4.40
5234 5612 2.095768 CGCAACCAAGTCATACCAACAG 60.096 50.000 0.00 0.00 0.00 3.16
5235 5613 1.876799 CGCAACCAAGTCATACCAACA 59.123 47.619 0.00 0.00 0.00 3.33
5236 5614 1.199097 CCGCAACCAAGTCATACCAAC 59.801 52.381 0.00 0.00 0.00 3.77
5237 5615 1.202830 ACCGCAACCAAGTCATACCAA 60.203 47.619 0.00 0.00 0.00 3.67
5298 5676 5.807011 GTGAGGCGATTTAAAAATGCAAGAT 59.193 36.000 10.56 0.00 0.00 2.40
5300 5678 4.922692 TGTGAGGCGATTTAAAAATGCAAG 59.077 37.500 10.56 0.00 0.00 4.01
5303 5681 4.504097 GGATGTGAGGCGATTTAAAAATGC 59.496 41.667 0.00 0.00 0.00 3.56
5325 5703 1.066002 CTGCACAACCACAACAGAAGG 59.934 52.381 0.00 0.00 0.00 3.46
5330 5708 0.529833 CCAACTGCACAACCACAACA 59.470 50.000 0.00 0.00 0.00 3.33
5340 5718 4.794169 ACGATATCAAAAACCAACTGCAC 58.206 39.130 3.12 0.00 0.00 4.57
5342 5720 5.569413 CCTACGATATCAAAAACCAACTGC 58.431 41.667 3.12 0.00 0.00 4.40
5348 5726 6.018994 CAGTACAGCCTACGATATCAAAAACC 60.019 42.308 3.12 0.00 0.00 3.27
5350 5728 6.533723 CACAGTACAGCCTACGATATCAAAAA 59.466 38.462 3.12 0.00 0.00 1.94
5351 5729 6.040247 CACAGTACAGCCTACGATATCAAAA 58.960 40.000 3.12 0.00 0.00 2.44
5361 5739 3.505464 ATCGTTCACAGTACAGCCTAC 57.495 47.619 0.00 0.00 0.00 3.18
5370 5748 7.148239 GGGAAGAAATTATGAATCGTTCACAGT 60.148 37.037 3.13 0.00 43.48 3.55
5379 5757 7.121907 GGCCTAGATGGGAAGAAATTATGAATC 59.878 40.741 0.00 0.00 36.00 2.52
5418 5796 7.549615 AATAAGTATTCAAGTAACGGAAGCC 57.450 36.000 0.00 0.00 0.00 4.35
5419 5797 9.836076 AAAAATAAGTATTCAAGTAACGGAAGC 57.164 29.630 0.00 0.00 0.00 3.86
5421 5799 9.615295 GCAAAAATAAGTATTCAAGTAACGGAA 57.385 29.630 0.00 0.00 0.00 4.30
5422 5800 7.958567 CGCAAAAATAAGTATTCAAGTAACGGA 59.041 33.333 0.00 0.00 0.00 4.69
5423 5801 7.217447 CCGCAAAAATAAGTATTCAAGTAACGG 59.783 37.037 0.00 0.00 0.00 4.44
5424 5802 7.217447 CCCGCAAAAATAAGTATTCAAGTAACG 59.783 37.037 0.00 0.00 0.00 3.18
5425 5803 8.024865 ACCCGCAAAAATAAGTATTCAAGTAAC 58.975 33.333 0.00 0.00 0.00 2.50
5426 5804 8.113173 ACCCGCAAAAATAAGTATTCAAGTAA 57.887 30.769 0.00 0.00 0.00 2.24
5427 5805 7.690952 ACCCGCAAAAATAAGTATTCAAGTA 57.309 32.000 0.00 0.00 0.00 2.24
5428 5806 6.584185 ACCCGCAAAAATAAGTATTCAAGT 57.416 33.333 0.00 0.00 0.00 3.16
5429 5807 6.970613 GGTACCCGCAAAAATAAGTATTCAAG 59.029 38.462 0.00 0.00 0.00 3.02
5430 5808 6.403418 CGGTACCCGCAAAAATAAGTATTCAA 60.403 38.462 6.25 0.00 41.17 2.69
5431 5809 5.064962 CGGTACCCGCAAAAATAAGTATTCA 59.935 40.000 6.25 0.00 41.17 2.57
5432 5810 5.504392 CGGTACCCGCAAAAATAAGTATTC 58.496 41.667 6.25 0.00 41.17 1.75
5433 5811 5.488645 CGGTACCCGCAAAAATAAGTATT 57.511 39.130 6.25 0.00 41.17 1.89
5448 5826 5.723295 TCAAGTATTCAAGTAACGGTACCC 58.277 41.667 7.09 0.00 0.00 3.69
5449 5827 7.037438 TCATCAAGTATTCAAGTAACGGTACC 58.963 38.462 7.09 0.16 0.00 3.34
5450 5828 7.972277 TCTCATCAAGTATTCAAGTAACGGTAC 59.028 37.037 1.22 1.22 0.00 3.34
5451 5829 8.058667 TCTCATCAAGTATTCAAGTAACGGTA 57.941 34.615 0.00 0.00 0.00 4.02
5452 5830 6.931838 TCTCATCAAGTATTCAAGTAACGGT 58.068 36.000 0.00 0.00 0.00 4.83
5453 5831 7.258441 TCTCTCATCAAGTATTCAAGTAACGG 58.742 38.462 0.00 0.00 0.00 4.44
5454 5832 8.864069 ATCTCTCATCAAGTATTCAAGTAACG 57.136 34.615 0.00 0.00 0.00 3.18
5458 5836 9.381033 CAAAGATCTCTCATCAAGTATTCAAGT 57.619 33.333 0.00 0.00 0.00 3.16
5459 5837 9.381033 ACAAAGATCTCTCATCAAGTATTCAAG 57.619 33.333 0.00 0.00 0.00 3.02
5460 5838 9.159364 CACAAAGATCTCTCATCAAGTATTCAA 57.841 33.333 0.00 0.00 0.00 2.69
5461 5839 7.767659 CCACAAAGATCTCTCATCAAGTATTCA 59.232 37.037 0.00 0.00 0.00 2.57
5462 5840 7.254727 GCCACAAAGATCTCTCATCAAGTATTC 60.255 40.741 0.00 0.00 0.00 1.75
5463 5841 6.541641 GCCACAAAGATCTCTCATCAAGTATT 59.458 38.462 0.00 0.00 0.00 1.89
5464 5842 6.054295 GCCACAAAGATCTCTCATCAAGTAT 58.946 40.000 0.00 0.00 0.00 2.12
5465 5843 5.188555 AGCCACAAAGATCTCTCATCAAGTA 59.811 40.000 0.00 0.00 0.00 2.24
5466 5844 4.019501 AGCCACAAAGATCTCTCATCAAGT 60.020 41.667 0.00 0.00 0.00 3.16
5467 5845 4.515361 AGCCACAAAGATCTCTCATCAAG 58.485 43.478 0.00 0.00 0.00 3.02
5468 5846 4.564782 AGCCACAAAGATCTCTCATCAA 57.435 40.909 0.00 0.00 0.00 2.57
5469 5847 4.259356 CAAGCCACAAAGATCTCTCATCA 58.741 43.478 0.00 0.00 0.00 3.07
5470 5848 4.260170 ACAAGCCACAAAGATCTCTCATC 58.740 43.478 0.00 0.00 0.00 2.92
5471 5849 4.298103 ACAAGCCACAAAGATCTCTCAT 57.702 40.909 0.00 0.00 0.00 2.90
5472 5850 3.777106 ACAAGCCACAAAGATCTCTCA 57.223 42.857 0.00 0.00 0.00 3.27
5473 5851 4.320788 CCAAACAAGCCACAAAGATCTCTC 60.321 45.833 0.00 0.00 0.00 3.20
5474 5852 3.571401 CCAAACAAGCCACAAAGATCTCT 59.429 43.478 0.00 0.00 0.00 3.10
5475 5853 3.569701 TCCAAACAAGCCACAAAGATCTC 59.430 43.478 0.00 0.00 0.00 2.75
5476 5854 3.565307 TCCAAACAAGCCACAAAGATCT 58.435 40.909 0.00 0.00 0.00 2.75
5477 5855 4.320608 TTCCAAACAAGCCACAAAGATC 57.679 40.909 0.00 0.00 0.00 2.75
5478 5856 4.961438 ATTCCAAACAAGCCACAAAGAT 57.039 36.364 0.00 0.00 0.00 2.40
5479 5857 4.161189 TGAATTCCAAACAAGCCACAAAGA 59.839 37.500 2.27 0.00 0.00 2.52
5480 5858 4.440880 TGAATTCCAAACAAGCCACAAAG 58.559 39.130 2.27 0.00 0.00 2.77
5481 5859 4.440880 CTGAATTCCAAACAAGCCACAAA 58.559 39.130 2.27 0.00 0.00 2.83
5482 5860 3.181467 CCTGAATTCCAAACAAGCCACAA 60.181 43.478 2.27 0.00 0.00 3.33
5483 5861 2.364970 CCTGAATTCCAAACAAGCCACA 59.635 45.455 2.27 0.00 0.00 4.17
5484 5862 2.627699 TCCTGAATTCCAAACAAGCCAC 59.372 45.455 2.27 0.00 0.00 5.01
5485 5863 2.956132 TCCTGAATTCCAAACAAGCCA 58.044 42.857 2.27 0.00 0.00 4.75
5486 5864 4.541973 AATCCTGAATTCCAAACAAGCC 57.458 40.909 2.27 0.00 0.00 4.35
5487 5865 6.866480 TCATAATCCTGAATTCCAAACAAGC 58.134 36.000 2.27 0.00 0.00 4.01
5488 5866 9.709495 TTTTCATAATCCTGAATTCCAAACAAG 57.291 29.630 2.27 0.00 35.20 3.16
5489 5867 9.487790 GTTTTCATAATCCTGAATTCCAAACAA 57.512 29.630 2.27 0.00 35.20 2.83
5490 5868 8.869109 AGTTTTCATAATCCTGAATTCCAAACA 58.131 29.630 2.27 0.00 35.20 2.83
5491 5869 9.710900 AAGTTTTCATAATCCTGAATTCCAAAC 57.289 29.630 2.27 0.00 35.20 2.93
5492 5870 9.709495 CAAGTTTTCATAATCCTGAATTCCAAA 57.291 29.630 2.27 0.00 35.20 3.28
5493 5871 8.313292 CCAAGTTTTCATAATCCTGAATTCCAA 58.687 33.333 2.27 0.00 35.20 3.53
5494 5872 7.579339 GCCAAGTTTTCATAATCCTGAATTCCA 60.579 37.037 2.27 0.00 35.20 3.53
5495 5873 6.758416 GCCAAGTTTTCATAATCCTGAATTCC 59.242 38.462 2.27 0.00 35.20 3.01
5496 5874 7.322664 TGCCAAGTTTTCATAATCCTGAATTC 58.677 34.615 0.00 0.00 35.20 2.17
5497 5875 7.243604 TGCCAAGTTTTCATAATCCTGAATT 57.756 32.000 0.00 0.00 35.20 2.17
5498 5876 6.855763 TGCCAAGTTTTCATAATCCTGAAT 57.144 33.333 0.00 0.00 35.20 2.57
5499 5877 6.436847 TCATGCCAAGTTTTCATAATCCTGAA 59.563 34.615 0.00 0.00 33.42 3.02
5500 5878 5.951148 TCATGCCAAGTTTTCATAATCCTGA 59.049 36.000 0.00 0.00 0.00 3.86
5501 5879 6.038356 GTCATGCCAAGTTTTCATAATCCTG 58.962 40.000 0.00 0.00 0.00 3.86
5502 5880 5.716228 TGTCATGCCAAGTTTTCATAATCCT 59.284 36.000 0.00 0.00 0.00 3.24
5503 5881 5.964758 TGTCATGCCAAGTTTTCATAATCC 58.035 37.500 0.00 0.00 0.00 3.01
5504 5882 8.483307 AATTGTCATGCCAAGTTTTCATAATC 57.517 30.769 0.00 0.00 0.00 1.75
5505 5883 8.723311 CAAATTGTCATGCCAAGTTTTCATAAT 58.277 29.630 0.00 0.00 30.91 1.28
5506 5884 7.714377 ACAAATTGTCATGCCAAGTTTTCATAA 59.286 29.630 0.00 0.00 30.91 1.90
5507 5885 7.215789 ACAAATTGTCATGCCAAGTTTTCATA 58.784 30.769 0.00 0.00 30.91 2.15
5508 5886 6.056884 ACAAATTGTCATGCCAAGTTTTCAT 58.943 32.000 0.00 0.00 30.91 2.57
5509 5887 5.426504 ACAAATTGTCATGCCAAGTTTTCA 58.573 33.333 0.00 0.00 30.91 2.69
5510 5888 5.989551 ACAAATTGTCATGCCAAGTTTTC 57.010 34.783 0.00 0.00 30.91 2.29
5511 5889 5.647225 ACAACAAATTGTCATGCCAAGTTTT 59.353 32.000 0.00 0.00 46.46 2.43
5512 5890 5.184711 ACAACAAATTGTCATGCCAAGTTT 58.815 33.333 0.00 0.00 46.46 2.66
5513 5891 4.768583 ACAACAAATTGTCATGCCAAGTT 58.231 34.783 0.00 0.00 46.46 2.66
5514 5892 4.405116 ACAACAAATTGTCATGCCAAGT 57.595 36.364 0.00 0.00 46.46 3.16
5525 5903 6.752168 AGGATTTTCAGAGGACAACAAATTG 58.248 36.000 0.00 0.00 41.98 2.32
5526 5904 6.983906 AGGATTTTCAGAGGACAACAAATT 57.016 33.333 0.00 0.00 0.00 1.82
5527 5905 6.983906 AAGGATTTTCAGAGGACAACAAAT 57.016 33.333 0.00 0.00 0.00 2.32
5528 5906 6.406849 CCAAAGGATTTTCAGAGGACAACAAA 60.407 38.462 0.00 0.00 35.03 2.83
5529 5907 5.068987 CCAAAGGATTTTCAGAGGACAACAA 59.931 40.000 0.00 0.00 35.03 2.83
5530 5908 4.584325 CCAAAGGATTTTCAGAGGACAACA 59.416 41.667 0.00 0.00 35.03 3.33
5531 5909 4.584743 ACCAAAGGATTTTCAGAGGACAAC 59.415 41.667 0.00 0.00 35.03 3.32
5532 5910 4.584325 CACCAAAGGATTTTCAGAGGACAA 59.416 41.667 0.00 0.00 35.03 3.18
5533 5911 4.144297 CACCAAAGGATTTTCAGAGGACA 58.856 43.478 0.00 0.00 35.03 4.02
5534 5912 3.057245 GCACCAAAGGATTTTCAGAGGAC 60.057 47.826 0.00 0.00 35.03 3.85
5535 5913 3.157087 GCACCAAAGGATTTTCAGAGGA 58.843 45.455 0.00 0.00 35.03 3.71
5536 5914 2.095059 CGCACCAAAGGATTTTCAGAGG 60.095 50.000 0.00 0.00 35.03 3.69
5537 5915 2.813754 TCGCACCAAAGGATTTTCAGAG 59.186 45.455 0.00 0.00 35.03 3.35
5538 5916 2.857483 TCGCACCAAAGGATTTTCAGA 58.143 42.857 0.00 0.00 35.03 3.27
5539 5917 3.004734 AGTTCGCACCAAAGGATTTTCAG 59.995 43.478 0.00 0.00 35.03 3.02
5540 5918 2.955660 AGTTCGCACCAAAGGATTTTCA 59.044 40.909 0.00 0.00 35.03 2.69
5541 5919 3.643159 AGTTCGCACCAAAGGATTTTC 57.357 42.857 0.00 0.00 35.03 2.29
5542 5920 5.523438 TTAAGTTCGCACCAAAGGATTTT 57.477 34.783 0.00 0.00 35.03 1.82
5543 5921 5.722021 ATTAAGTTCGCACCAAAGGATTT 57.278 34.783 0.00 0.00 40.26 2.17
5544 5922 5.722021 AATTAAGTTCGCACCAAAGGATT 57.278 34.783 0.00 0.00 0.00 3.01
5545 5923 5.722021 AAATTAAGTTCGCACCAAAGGAT 57.278 34.783 0.00 0.00 0.00 3.24
5546 5924 5.523438 AAAATTAAGTTCGCACCAAAGGA 57.477 34.783 0.00 0.00 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.