Multiple sequence alignment - TraesCS3D01G346300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G346300 chr3D 100.000 3337 0 0 1 3337 457411057 457407721 0.000000e+00 6163.0
1 TraesCS3D01G346300 chr3D 95.575 452 19 1 2886 3336 579551270 579551721 0.000000e+00 723.0
2 TraesCS3D01G346300 chr3D 90.602 266 13 6 2780 3042 535460247 535460503 3.190000e-90 342.0
3 TraesCS3D01G346300 chr3A 82.585 1648 140 78 608 2165 600323503 600321913 0.000000e+00 1317.0
4 TraesCS3D01G346300 chr3A 93.357 572 21 10 1 563 600324452 600323889 0.000000e+00 830.0
5 TraesCS3D01G346300 chr1D 94.043 554 22 3 2785 3336 19874692 19875236 0.000000e+00 830.0
6 TraesCS3D01G346300 chr1D 93.682 554 24 3 2785 3336 250740842 250741386 0.000000e+00 819.0
7 TraesCS3D01G346300 chr4D 93.548 558 25 5 2782 3337 501080617 501080069 0.000000e+00 821.0
8 TraesCS3D01G346300 chr4D 93.525 556 25 3 2783 3336 50230987 50231533 0.000000e+00 817.0
9 TraesCS3D01G346300 chr4D 92.960 554 28 8 2785 3336 406229914 406229370 0.000000e+00 797.0
10 TraesCS3D01G346300 chr5D 93.502 554 25 5 2785 3336 342526229 342525685 0.000000e+00 813.0
11 TraesCS3D01G346300 chr5A 93.502 554 25 3 2785 3336 528555411 528554867 0.000000e+00 813.0
12 TraesCS3D01G346300 chr1B 93.502 554 25 5 2785 3336 305284327 305284871 0.000000e+00 813.0
13 TraesCS3D01G346300 chr5B 93.333 555 25 4 2785 3337 318173343 318172799 0.000000e+00 809.0
14 TraesCS3D01G346300 chr5B 87.097 62 6 2 1712 1771 565493743 565493804 5.970000e-08 69.4
15 TraesCS3D01G346300 chr3B 87.114 745 46 24 1073 1771 605020407 605019667 0.000000e+00 798.0
16 TraesCS3D01G346300 chr3B 90.092 434 24 9 1 415 605021662 605021229 2.260000e-151 545.0
17 TraesCS3D01G346300 chr3B 92.150 293 10 5 1866 2153 605019653 605019369 5.190000e-108 401.0
18 TraesCS3D01G346300 chr3B 93.488 215 9 2 2175 2384 605019375 605019161 6.950000e-82 315.0
19 TraesCS3D01G346300 chr3B 84.706 170 14 7 2500 2661 605019015 605018850 3.450000e-35 159.0
20 TraesCS3D01G346300 chr7D 92.780 554 28 4 2785 3336 136707603 136708146 0.000000e+00 791.0
21 TraesCS3D01G346300 chr7D 91.877 554 17 8 2785 3336 320285495 320286022 0.000000e+00 749.0
22 TraesCS3D01G346300 chr7D 81.250 272 30 12 2783 3048 431244582 431244838 2.030000e-47 200.0
23 TraesCS3D01G346300 chr4B 82.847 548 65 19 2785 3321 12866782 12867311 6.520000e-127 464.0
24 TraesCS3D01G346300 chr4B 88.344 163 8 3 2785 2945 11438438 11438591 5.690000e-43 185.0
25 TraesCS3D01G346300 chr4B 90.385 52 5 0 1723 1774 149734332 149734281 5.970000e-08 69.4
26 TraesCS3D01G346300 chr2D 88.732 355 20 6 2783 3135 623352710 623352374 1.850000e-112 416.0
27 TraesCS3D01G346300 chr2D 86.025 322 12 9 2785 3103 486003334 486003043 6.950000e-82 315.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G346300 chr3D 457407721 457411057 3336 True 6163.0 6163 100.000 1 3337 1 chr3D.!!$R1 3336
1 TraesCS3D01G346300 chr3A 600321913 600324452 2539 True 1073.5 1317 87.971 1 2165 2 chr3A.!!$R1 2164
2 TraesCS3D01G346300 chr1D 19874692 19875236 544 False 830.0 830 94.043 2785 3336 1 chr1D.!!$F1 551
3 TraesCS3D01G346300 chr1D 250740842 250741386 544 False 819.0 819 93.682 2785 3336 1 chr1D.!!$F2 551
4 TraesCS3D01G346300 chr4D 501080069 501080617 548 True 821.0 821 93.548 2782 3337 1 chr4D.!!$R2 555
5 TraesCS3D01G346300 chr4D 50230987 50231533 546 False 817.0 817 93.525 2783 3336 1 chr4D.!!$F1 553
6 TraesCS3D01G346300 chr4D 406229370 406229914 544 True 797.0 797 92.960 2785 3336 1 chr4D.!!$R1 551
7 TraesCS3D01G346300 chr5D 342525685 342526229 544 True 813.0 813 93.502 2785 3336 1 chr5D.!!$R1 551
8 TraesCS3D01G346300 chr5A 528554867 528555411 544 True 813.0 813 93.502 2785 3336 1 chr5A.!!$R1 551
9 TraesCS3D01G346300 chr1B 305284327 305284871 544 False 813.0 813 93.502 2785 3336 1 chr1B.!!$F1 551
10 TraesCS3D01G346300 chr5B 318172799 318173343 544 True 809.0 809 93.333 2785 3337 1 chr5B.!!$R1 552
11 TraesCS3D01G346300 chr3B 605018850 605021662 2812 True 443.6 798 89.510 1 2661 5 chr3B.!!$R1 2660
12 TraesCS3D01G346300 chr7D 136707603 136708146 543 False 791.0 791 92.780 2785 3336 1 chr7D.!!$F1 551
13 TraesCS3D01G346300 chr7D 320285495 320286022 527 False 749.0 749 91.877 2785 3336 1 chr7D.!!$F2 551
14 TraesCS3D01G346300 chr4B 12866782 12867311 529 False 464.0 464 82.847 2785 3321 1 chr4B.!!$F2 536

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
805 1248 0.447801 ATTGTTCCAGATGCGCGTTC 59.552 50.0 8.43 5.44 0.0 3.95 F
1111 1632 0.027586 GAACGCAACCATACATCCGC 59.972 55.0 0.00 0.00 0.0 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2174 2820 0.035056 CTGAATTTGCCTCCGGTCCT 60.035 55.0 0.0 0.0 0.00 3.85 R
2896 3597 0.034756 TGTGAGGCGTTGCACAGTAT 59.965 50.0 0.0 0.0 39.86 2.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 1.667830 ACTGCACCACATCGTTCCG 60.668 57.895 0.00 0.00 0.00 4.30
69 82 0.749091 ATGCTATTCTGCTTGCGCCA 60.749 50.000 4.18 0.00 34.43 5.69
308 324 7.687445 ACTTTTGATTTTTGTTCATGACTTGC 58.313 30.769 0.00 0.00 0.00 4.01
316 332 0.674581 TTCATGACTTGCTGAGCCGG 60.675 55.000 0.23 0.00 0.00 6.13
319 335 2.031163 GACTTGCTGAGCCGGTGT 59.969 61.111 1.90 0.00 0.00 4.16
421 446 3.755112 TGTAGATTGGTGAACCGAACA 57.245 42.857 0.00 0.00 39.43 3.18
422 447 4.280436 TGTAGATTGGTGAACCGAACAT 57.720 40.909 0.00 0.00 39.43 2.71
443 468 1.478916 TGTGTTCTTCGTGTCCACAGA 59.521 47.619 0.00 0.00 32.64 3.41
444 469 2.102420 TGTGTTCTTCGTGTCCACAGAT 59.898 45.455 0.00 0.00 32.64 2.90
515 541 7.650504 GCTGTTACTACGTTGTTGGATATCATA 59.349 37.037 8.18 0.00 0.00 2.15
566 592 3.684103 TTTGTTGGTCGCTTGTAGTTG 57.316 42.857 0.00 0.00 0.00 3.16
567 593 1.588674 TGTTGGTCGCTTGTAGTTGG 58.411 50.000 0.00 0.00 0.00 3.77
569 595 2.215196 GTTGGTCGCTTGTAGTTGGAA 58.785 47.619 0.00 0.00 0.00 3.53
572 598 3.071479 TGGTCGCTTGTAGTTGGAATTC 58.929 45.455 0.00 0.00 0.00 2.17
573 599 3.244422 TGGTCGCTTGTAGTTGGAATTCT 60.244 43.478 5.23 0.00 0.00 2.40
587 638 7.716612 AGTTGGAATTCTTTACTTTCACCTTG 58.283 34.615 5.23 0.00 0.00 3.61
592 643 7.228706 GGAATTCTTTACTTTCACCTTGAGTCA 59.771 37.037 5.23 0.00 0.00 3.41
596 647 7.930217 TCTTTACTTTCACCTTGAGTCAAATG 58.070 34.615 7.06 8.53 0.00 2.32
614 981 7.716998 AGTCAAATGTATCCGATTGCTTAAGAT 59.283 33.333 6.67 0.00 0.00 2.40
620 987 3.342719 TCCGATTGCTTAAGATGCACAA 58.657 40.909 6.67 0.62 40.40 3.33
641 1081 2.687935 AGTGCAATTTTCTCGTGGTTGT 59.312 40.909 0.00 0.00 0.00 3.32
709 1149 3.605664 GCAAGGCCCGTTTGCTGT 61.606 61.111 18.35 0.00 45.64 4.40
723 1163 1.817099 GCTGTCGATGGCCAGAAGG 60.817 63.158 13.05 0.00 38.23 3.46
754 1197 1.376683 GTTGCCGGCCAGTGTGATA 60.377 57.895 26.77 0.00 0.00 2.15
775 1218 4.162690 GGCGAGATCTGGGCCGTT 62.163 66.667 18.98 0.00 37.06 4.44
805 1248 0.447801 ATTGTTCCAGATGCGCGTTC 59.552 50.000 8.43 5.44 0.00 3.95
838 1282 4.148348 CAGTTGTAGCAGTACTTGTTCGTC 59.852 45.833 0.00 0.00 0.00 4.20
841 1285 3.819337 TGTAGCAGTACTTGTTCGTCTCT 59.181 43.478 0.00 0.00 0.00 3.10
842 1286 4.277672 TGTAGCAGTACTTGTTCGTCTCTT 59.722 41.667 0.00 0.00 0.00 2.85
843 1287 4.323553 AGCAGTACTTGTTCGTCTCTTT 57.676 40.909 0.00 0.00 0.00 2.52
844 1288 4.299978 AGCAGTACTTGTTCGTCTCTTTC 58.700 43.478 0.00 0.00 0.00 2.62
845 1289 4.038162 AGCAGTACTTGTTCGTCTCTTTCT 59.962 41.667 0.00 0.00 0.00 2.52
846 1290 4.149046 GCAGTACTTGTTCGTCTCTTTCTG 59.851 45.833 0.00 0.00 0.00 3.02
847 1291 4.149046 CAGTACTTGTTCGTCTCTTTCTGC 59.851 45.833 0.00 0.00 0.00 4.26
866 1310 1.393539 GCTTTCGATTAAGACAGCGCA 59.606 47.619 11.47 0.00 34.77 6.09
886 1330 4.536364 CAGTGTTTACCGCTGGATTATG 57.464 45.455 1.50 0.00 45.97 1.90
903 1347 5.237344 GGATTATGTGTGCTCTGTATGGTTC 59.763 44.000 0.00 0.00 0.00 3.62
940 1384 7.047891 AGAATTCATCACGAATAGCAAAGGTA 58.952 34.615 8.44 0.00 43.83 3.08
945 1389 5.600908 TCACGAATAGCAAAGGTAAACAC 57.399 39.130 0.00 0.00 0.00 3.32
946 1390 4.150980 TCACGAATAGCAAAGGTAAACACG 59.849 41.667 0.00 0.00 0.00 4.49
947 1391 3.434299 ACGAATAGCAAAGGTAAACACGG 59.566 43.478 0.00 0.00 0.00 4.94
950 1394 1.223187 AGCAAAGGTAAACACGGACG 58.777 50.000 0.00 0.00 0.00 4.79
962 1406 1.011968 CACGGACGCGAAATTCCTGA 61.012 55.000 15.93 0.00 0.00 3.86
966 1410 1.327764 GGACGCGAAATTCCTGACATC 59.672 52.381 15.93 0.00 0.00 3.06
990 1434 0.668535 GCACTTTCTTTGCCGAACCT 59.331 50.000 0.00 0.00 33.58 3.50
991 1435 1.600413 GCACTTTCTTTGCCGAACCTG 60.600 52.381 0.00 0.00 33.58 4.00
992 1436 1.946768 CACTTTCTTTGCCGAACCTGA 59.053 47.619 0.00 0.00 0.00 3.86
994 1438 3.004734 CACTTTCTTTGCCGAACCTGAAT 59.995 43.478 0.00 0.00 0.00 2.57
995 1439 4.215399 CACTTTCTTTGCCGAACCTGAATA 59.785 41.667 0.00 0.00 0.00 1.75
998 1442 5.975693 TTCTTTGCCGAACCTGAATAAAT 57.024 34.783 0.00 0.00 0.00 1.40
999 1443 5.560966 TCTTTGCCGAACCTGAATAAATC 57.439 39.130 0.00 0.00 0.00 2.17
1000 1444 4.094294 TCTTTGCCGAACCTGAATAAATCG 59.906 41.667 0.00 0.00 0.00 3.34
1001 1445 1.668751 TGCCGAACCTGAATAAATCGC 59.331 47.619 0.00 0.00 32.46 4.58
1015 1459 1.729470 AATCGCTCGCTCCATCGACT 61.729 55.000 0.00 0.00 34.46 4.18
1034 1478 4.700365 TCACTCAGGTCACGCGCG 62.700 66.667 30.96 30.96 0.00 6.86
1048 1492 2.972505 CGCGCCCTGTCTGTGTTT 60.973 61.111 0.00 0.00 0.00 2.83
1049 1493 2.946762 GCGCCCTGTCTGTGTTTC 59.053 61.111 0.00 0.00 0.00 2.78
1050 1494 1.598130 GCGCCCTGTCTGTGTTTCT 60.598 57.895 0.00 0.00 0.00 2.52
1068 1536 2.202492 CGTCTCGTCTCCCTTGCG 60.202 66.667 0.00 0.00 0.00 4.85
1108 1629 1.006391 CGTCGAACGCAACCATACATC 60.006 52.381 0.00 0.00 33.65 3.06
1111 1632 0.027586 GAACGCAACCATACATCCGC 59.972 55.000 0.00 0.00 0.00 5.54
1151 1672 3.049674 GCTGCAGCTTGTACCGCA 61.050 61.111 31.33 0.00 38.21 5.69
1375 1915 5.108027 CGAACCAAAACCAAATCATCGTTTC 60.108 40.000 0.00 0.00 0.00 2.78
1388 1928 2.279582 TCGTTTCGAGCTCTCCATTC 57.720 50.000 12.85 0.00 0.00 2.67
1410 1950 1.552348 GATGCTCGGTGCGCTGATAC 61.552 60.000 9.70 5.80 46.63 2.24
1414 1954 0.867753 CTCGGTGCGCTGATACTGAC 60.868 60.000 9.70 0.00 0.00 3.51
1419 1959 1.009078 TGCGCTGATACTGACATTGC 58.991 50.000 9.73 0.00 0.00 3.56
1426 1969 2.159430 TGATACTGACATTGCGTTGTGC 59.841 45.455 0.00 0.00 46.70 4.57
1561 2109 3.902881 TGCATTCTCCTTCTTCTCCTC 57.097 47.619 0.00 0.00 0.00 3.71
1574 2122 1.149627 CTCCTCCTCGATCGACCCT 59.850 63.158 15.15 0.00 0.00 4.34
1577 2125 2.833582 TCCTCGATCGACCCTGGC 60.834 66.667 15.15 0.00 0.00 4.85
1586 2134 3.570212 GACCCTGGCAGTGGTGGT 61.570 66.667 25.93 19.70 34.20 4.16
1591 2169 4.497984 TGGCAGTGGTGGTGCGTT 62.498 61.111 0.00 0.00 42.19 4.84
1601 2179 1.951602 GGTGGTGCGTTTTTCCTTACT 59.048 47.619 0.00 0.00 0.00 2.24
1602 2180 2.287368 GGTGGTGCGTTTTTCCTTACTG 60.287 50.000 0.00 0.00 0.00 2.74
1738 2329 1.588824 ATCGTCGCCGTCAAGGTACA 61.589 55.000 0.00 0.00 43.70 2.90
1783 2412 4.217836 CCCCCTTTACTTACTTCAGTCC 57.782 50.000 0.00 0.00 0.00 3.85
1784 2413 3.369157 CCCCCTTTACTTACTTCAGTCCG 60.369 52.174 0.00 0.00 0.00 4.79
1785 2414 3.260128 CCCCTTTACTTACTTCAGTCCGT 59.740 47.826 0.00 0.00 0.00 4.69
1786 2415 4.492611 CCCTTTACTTACTTCAGTCCGTC 58.507 47.826 0.00 0.00 0.00 4.79
1787 2416 4.164294 CCTTTACTTACTTCAGTCCGTCG 58.836 47.826 0.00 0.00 0.00 5.12
1788 2417 4.083110 CCTTTACTTACTTCAGTCCGTCGA 60.083 45.833 0.00 0.00 0.00 4.20
1789 2418 5.437289 TTTACTTACTTCAGTCCGTCGAA 57.563 39.130 0.00 0.00 0.00 3.71
1790 2419 5.633830 TTACTTACTTCAGTCCGTCGAAT 57.366 39.130 0.00 0.00 0.00 3.34
1791 2420 6.741992 TTACTTACTTCAGTCCGTCGAATA 57.258 37.500 0.00 0.00 0.00 1.75
1792 2421 5.232610 ACTTACTTCAGTCCGTCGAATAG 57.767 43.478 0.00 0.00 0.00 1.73
1793 2422 2.563471 ACTTCAGTCCGTCGAATAGC 57.437 50.000 0.00 0.00 0.00 2.97
1794 2423 2.093106 ACTTCAGTCCGTCGAATAGCT 58.907 47.619 0.00 0.00 0.00 3.32
1795 2424 3.276857 ACTTCAGTCCGTCGAATAGCTA 58.723 45.455 0.00 0.00 0.00 3.32
1796 2425 3.312973 ACTTCAGTCCGTCGAATAGCTAG 59.687 47.826 0.00 0.00 0.00 3.42
1797 2426 1.602851 TCAGTCCGTCGAATAGCTAGC 59.397 52.381 6.62 6.62 0.00 3.42
1798 2427 0.587285 AGTCCGTCGAATAGCTAGCG 59.413 55.000 9.55 11.37 0.00 4.26
1799 2428 0.997726 GTCCGTCGAATAGCTAGCGC 60.998 60.000 9.55 0.00 0.00 5.92
1800 2429 2.075489 CCGTCGAATAGCTAGCGCG 61.075 63.158 9.55 18.86 42.32 6.86
1801 2430 2.698432 CGTCGAATAGCTAGCGCGC 61.698 63.158 26.66 26.66 42.32 6.86
1802 2431 2.426916 TCGAATAGCTAGCGCGCG 60.427 61.111 28.44 28.44 42.32 6.86
1803 2432 3.461982 CGAATAGCTAGCGCGCGG 61.462 66.667 33.06 22.90 42.32 6.46
1804 2433 3.768293 GAATAGCTAGCGCGCGGC 61.768 66.667 32.93 32.93 42.32 6.53
1819 2448 4.367023 GGCGTGCACACCTCCGTA 62.367 66.667 16.80 0.00 0.00 4.02
1820 2449 2.125673 GCGTGCACACCTCCGTAT 60.126 61.111 18.64 0.00 0.00 3.06
1821 2450 1.740296 GCGTGCACACCTCCGTATT 60.740 57.895 18.64 0.00 0.00 1.89
1822 2451 0.458889 GCGTGCACACCTCCGTATTA 60.459 55.000 18.64 0.00 0.00 0.98
1823 2452 1.999048 CGTGCACACCTCCGTATTAA 58.001 50.000 18.64 0.00 0.00 1.40
1824 2453 2.546778 CGTGCACACCTCCGTATTAAT 58.453 47.619 18.64 0.00 0.00 1.40
1825 2454 3.708890 CGTGCACACCTCCGTATTAATA 58.291 45.455 18.64 0.00 0.00 0.98
1829 2458 6.563381 CGTGCACACCTCCGTATTAATAAATC 60.563 42.308 18.64 0.00 0.00 2.17
1842 2471 8.491152 CGTATTAATAAATCTCAGTTGAGCCAG 58.509 37.037 4.25 0.00 41.80 4.85
1846 2475 0.390866 ATCTCAGTTGAGCCAGCACG 60.391 55.000 4.25 0.00 41.80 5.34
1847 2476 1.301244 CTCAGTTGAGCCAGCACGT 60.301 57.895 0.00 0.00 35.13 4.49
1848 2477 1.287730 CTCAGTTGAGCCAGCACGTC 61.288 60.000 0.00 0.00 35.13 4.34
1849 2478 1.301244 CAGTTGAGCCAGCACGTCT 60.301 57.895 0.00 0.00 0.00 4.18
1851 2480 2.049156 TTGAGCCAGCACGTCTCG 60.049 61.111 0.00 0.00 0.00 4.04
1853 2482 1.877576 TTGAGCCAGCACGTCTCGAT 61.878 55.000 0.00 0.00 0.00 3.59
1854 2483 1.587613 GAGCCAGCACGTCTCGATC 60.588 63.158 0.00 0.00 0.00 3.69
1855 2484 1.999071 GAGCCAGCACGTCTCGATCT 61.999 60.000 0.00 0.00 0.00 2.75
1856 2485 1.875813 GCCAGCACGTCTCGATCTG 60.876 63.158 0.00 2.99 32.99 2.90
1857 2486 1.875813 CCAGCACGTCTCGATCTGC 60.876 63.158 0.00 0.00 32.35 4.26
1858 2487 1.138459 CAGCACGTCTCGATCTGCT 59.862 57.895 0.00 0.00 40.69 4.24
1859 2488 1.138459 AGCACGTCTCGATCTGCTG 59.862 57.895 4.25 0.00 38.56 4.41
1954 2593 9.908747 ATGGCTTAGATATAGTGGTACTAGTAG 57.091 37.037 1.87 0.00 33.66 2.57
1964 2607 3.688185 GTGGTACTAGTAGCTTTTTGGGC 59.312 47.826 27.42 2.99 34.84 5.36
1967 2610 5.105064 TGGTACTAGTAGCTTTTTGGGCTAG 60.105 44.000 27.42 0.00 42.03 3.42
2082 2728 2.501128 CCGAGTCCGACATGGCAT 59.499 61.111 0.00 0.00 38.22 4.40
2112 2758 2.561569 ACCGTGTTTTCAGAGACAAGG 58.438 47.619 15.06 15.06 46.51 3.61
2128 2774 4.512914 GGGAGCACCTGCCCATCC 62.513 72.222 0.00 2.32 44.07 3.51
2159 2805 0.672401 TTTTGGAGGACCGACGCATC 60.672 55.000 0.00 0.00 39.42 3.91
2162 2808 2.122167 GGAGGACCGACGCATCTCT 61.122 63.158 0.00 0.00 0.00 3.10
2165 2811 0.681564 AGGACCGACGCATCTCTTCT 60.682 55.000 0.00 0.00 0.00 2.85
2166 2812 0.248702 GGACCGACGCATCTCTTCTC 60.249 60.000 0.00 0.00 0.00 2.87
2167 2813 0.452184 GACCGACGCATCTCTTCTCA 59.548 55.000 0.00 0.00 0.00 3.27
2168 2814 1.066303 GACCGACGCATCTCTTCTCAT 59.934 52.381 0.00 0.00 0.00 2.90
2169 2815 1.066303 ACCGACGCATCTCTTCTCATC 59.934 52.381 0.00 0.00 0.00 2.92
2170 2816 1.601663 CCGACGCATCTCTTCTCATCC 60.602 57.143 0.00 0.00 0.00 3.51
2171 2817 1.601663 CGACGCATCTCTTCTCATCCC 60.602 57.143 0.00 0.00 0.00 3.85
2172 2818 1.410517 GACGCATCTCTTCTCATCCCA 59.589 52.381 0.00 0.00 0.00 4.37
2173 2819 2.036992 GACGCATCTCTTCTCATCCCAT 59.963 50.000 0.00 0.00 0.00 4.00
2174 2820 3.234353 ACGCATCTCTTCTCATCCCATA 58.766 45.455 0.00 0.00 0.00 2.74
2175 2821 3.257873 ACGCATCTCTTCTCATCCCATAG 59.742 47.826 0.00 0.00 0.00 2.23
2176 2822 3.368220 CGCATCTCTTCTCATCCCATAGG 60.368 52.174 0.00 0.00 0.00 2.57
2273 2919 4.058124 TGAAACCAACGAGATTCAGACAG 58.942 43.478 0.00 0.00 0.00 3.51
2293 2939 1.663135 GAGAAGCTCCGAGCACATTTC 59.337 52.381 22.29 15.77 45.56 2.17
2304 2951 0.458370 GCACATTTCCCATGGCGTTC 60.458 55.000 6.09 0.00 0.00 3.95
2338 2985 2.648724 CGCGTCGAAATGCATGGC 60.649 61.111 0.00 0.00 37.24 4.40
2351 2998 0.107312 GCATGGCTCTGTCCAGTGAT 60.107 55.000 0.00 0.00 39.89 3.06
2384 3035 0.527565 GCATGCGATTTTCTGGGTGT 59.472 50.000 0.00 0.00 0.00 4.16
2385 3036 1.468054 GCATGCGATTTTCTGGGTGTC 60.468 52.381 0.00 0.00 0.00 3.67
2386 3037 2.086869 CATGCGATTTTCTGGGTGTCT 58.913 47.619 0.00 0.00 0.00 3.41
2417 3109 4.287067 TCAAGTAGGTGAAGCCAAAGAGAT 59.713 41.667 0.00 0.00 40.61 2.75
2430 3122 5.045724 AGCCAAAGAGATTCAGAGAAGTGAT 60.046 40.000 0.00 0.00 0.00 3.06
2431 3123 5.294060 GCCAAAGAGATTCAGAGAAGTGATC 59.706 44.000 0.00 0.00 0.00 2.92
2438 3130 1.515088 AGAGAAGTGATCGTGCGCG 60.515 57.895 14.79 14.79 39.92 6.86
2441 3133 3.010585 GAAGTGATCGTGCGCGCAA 62.011 57.895 38.24 23.20 38.14 4.85
2443 3135 2.764251 AAGTGATCGTGCGCGCAAAC 62.764 55.000 38.24 26.13 38.14 2.93
2454 3146 4.093952 CGCAAACTCCTGCCGCTG 62.094 66.667 0.00 0.00 39.26 5.18
2455 3147 3.741476 GCAAACTCCTGCCGCTGG 61.741 66.667 9.98 9.98 36.25 4.85
2456 3148 2.281761 CAAACTCCTGCCGCTGGT 60.282 61.111 15.28 0.00 0.00 4.00
2457 3149 1.898574 CAAACTCCTGCCGCTGGTT 60.899 57.895 15.28 1.67 0.00 3.67
2458 3150 1.152756 AAACTCCTGCCGCTGGTTT 60.153 52.632 15.28 7.47 0.00 3.27
2459 3151 0.755327 AAACTCCTGCCGCTGGTTTT 60.755 50.000 15.28 12.61 0.00 2.43
2461 3153 1.898574 CTCCTGCCGCTGGTTTTGT 60.899 57.895 15.28 0.00 0.00 2.83
2462 3154 2.133742 CTCCTGCCGCTGGTTTTGTG 62.134 60.000 15.28 0.00 0.00 3.33
2463 3155 2.336088 CTGCCGCTGGTTTTGTGG 59.664 61.111 0.00 0.00 38.07 4.17
2467 3159 2.780094 CCGCTGGTTTTGTGGCACA 61.780 57.895 17.96 17.96 0.00 4.57
2468 3160 1.363443 CGCTGGTTTTGTGGCACAT 59.637 52.632 22.73 0.00 44.52 3.21
2469 3161 0.249405 CGCTGGTTTTGTGGCACATT 60.249 50.000 22.73 0.00 44.52 2.71
2470 3162 1.805871 CGCTGGTTTTGTGGCACATTT 60.806 47.619 22.73 0.00 44.52 2.32
2473 3165 3.269178 CTGGTTTTGTGGCACATTTTGT 58.731 40.909 22.73 0.00 44.52 2.83
2474 3166 4.437239 CTGGTTTTGTGGCACATTTTGTA 58.563 39.130 22.73 1.58 44.52 2.41
2475 3167 5.028549 TGGTTTTGTGGCACATTTTGTAT 57.971 34.783 22.73 0.00 44.52 2.29
2476 3168 4.813161 TGGTTTTGTGGCACATTTTGTATG 59.187 37.500 22.73 0.00 44.52 2.39
2477 3169 4.213059 GGTTTTGTGGCACATTTTGTATGG 59.787 41.667 22.73 0.00 44.52 2.74
2478 3170 2.739885 TGTGGCACATTTTGTATGGC 57.260 45.000 17.96 0.00 44.52 4.40
2479 3171 1.966354 TGTGGCACATTTTGTATGGCA 59.034 42.857 17.96 0.00 45.58 4.92
2481 3173 3.977134 TGGCACATTTTGTATGGCATT 57.023 38.095 4.78 0.00 43.23 3.56
2482 3174 3.859443 TGGCACATTTTGTATGGCATTC 58.141 40.909 4.78 0.00 43.23 2.67
2483 3175 3.197265 GGCACATTTTGTATGGCATTCC 58.803 45.455 4.78 0.00 38.69 3.01
2486 3178 3.130164 CACATTTTGTATGGCATTCCGGA 59.870 43.478 4.78 0.00 34.14 5.14
2489 3181 2.727123 TTGTATGGCATTCCGGATGT 57.273 45.000 4.15 0.00 38.07 3.06
2495 3187 1.750399 GCATTCCGGATGTGCCAGT 60.750 57.895 24.44 0.00 38.07 4.00
2496 3188 1.718757 GCATTCCGGATGTGCCAGTC 61.719 60.000 24.44 4.28 38.07 3.51
2497 3189 0.392863 CATTCCGGATGTGCCAGTCA 60.393 55.000 4.15 0.00 35.94 3.41
2498 3190 0.392998 ATTCCGGATGTGCCAGTCAC 60.393 55.000 4.15 0.00 45.82 3.67
2505 3197 2.196749 GATGTGCCAGTCACTCATACG 58.803 52.381 0.00 0.00 45.81 3.06
2507 3199 2.164338 TGTGCCAGTCACTCATACGTA 58.836 47.619 0.00 0.00 45.81 3.57
2516 3208 5.516696 CAGTCACTCATACGTACATTCTTGG 59.483 44.000 0.00 0.00 0.00 3.61
2519 3211 4.566759 CACTCATACGTACATTCTTGGGTG 59.433 45.833 9.53 9.53 30.13 4.61
2520 3212 3.527533 TCATACGTACATTCTTGGGTGC 58.472 45.455 0.00 0.00 0.00 5.01
2521 3213 2.389962 TACGTACATTCTTGGGTGCC 57.610 50.000 0.00 0.00 0.00 5.01
2522 3214 0.690762 ACGTACATTCTTGGGTGCCT 59.309 50.000 0.00 0.00 0.00 4.75
2526 3218 1.072266 ACATTCTTGGGTGCCTGGTA 58.928 50.000 0.00 0.00 0.00 3.25
2527 3219 1.427368 ACATTCTTGGGTGCCTGGTAA 59.573 47.619 0.00 0.00 0.00 2.85
2528 3220 2.042979 ACATTCTTGGGTGCCTGGTAAT 59.957 45.455 0.00 0.00 0.00 1.89
2618 3310 1.799917 GCGACATCATTCCGTTCCGTA 60.800 52.381 0.00 0.00 0.00 4.02
2626 3318 1.794151 TTCCGTTCCGTAGCGACACA 61.794 55.000 0.00 0.00 0.00 3.72
2628 3320 2.423031 CGTTCCGTAGCGACACACG 61.423 63.158 0.00 0.00 45.66 4.49
2632 3324 2.731721 CGTAGCGACACACGGCAA 60.732 61.111 0.00 0.00 42.83 4.52
2633 3325 2.716828 CGTAGCGACACACGGCAAG 61.717 63.158 0.00 0.00 42.83 4.01
2634 3326 2.736995 TAGCGACACACGGCAAGC 60.737 61.111 0.00 0.00 42.83 4.01
2651 3350 2.032071 CCCCCACCACACGAGTTC 59.968 66.667 0.00 0.00 0.00 3.01
2662 3361 3.824806 CGAGTTCGTTCGTTCGCT 58.175 55.556 0.00 0.00 35.91 4.93
2663 3362 1.407329 CGAGTTCGTTCGTTCGCTG 59.593 57.895 0.00 0.00 35.91 5.18
2664 3363 1.773496 GAGTTCGTTCGTTCGCTGG 59.227 57.895 0.00 0.00 0.00 4.85
2665 3364 1.615107 GAGTTCGTTCGTTCGCTGGG 61.615 60.000 0.00 0.00 0.00 4.45
2666 3365 3.039588 TTCGTTCGTTCGCTGGGC 61.040 61.111 0.00 0.00 0.00 5.36
2683 3382 2.736236 CGCAGCAGAGCTCAACGT 60.736 61.111 17.77 0.00 36.40 3.99
2684 3383 2.858868 GCAGCAGAGCTCAACGTG 59.141 61.111 17.77 6.40 36.40 4.49
2685 3384 1.665916 GCAGCAGAGCTCAACGTGA 60.666 57.895 17.77 0.00 36.40 4.35
2686 3385 1.624865 GCAGCAGAGCTCAACGTGAG 61.625 60.000 17.77 9.73 46.90 3.51
2689 3388 2.095461 AGCAGAGCTCAACGTGAGATA 58.905 47.619 17.77 0.00 44.01 1.98
2690 3389 2.159310 AGCAGAGCTCAACGTGAGATAC 60.159 50.000 17.77 6.00 44.01 2.24
2691 3390 2.159310 GCAGAGCTCAACGTGAGATACT 60.159 50.000 17.77 6.47 44.01 2.12
2692 3391 3.065510 GCAGAGCTCAACGTGAGATACTA 59.934 47.826 17.77 0.00 44.01 1.82
2693 3392 4.261405 GCAGAGCTCAACGTGAGATACTAT 60.261 45.833 17.77 2.29 44.01 2.12
2694 3393 5.211454 CAGAGCTCAACGTGAGATACTATG 58.789 45.833 17.77 9.28 44.01 2.23
2695 3394 5.008118 CAGAGCTCAACGTGAGATACTATGA 59.992 44.000 17.77 0.68 44.01 2.15
2696 3395 5.590663 AGAGCTCAACGTGAGATACTATGAA 59.409 40.000 17.77 0.00 44.01 2.57
2697 3396 5.683743 GAGCTCAACGTGAGATACTATGAAC 59.316 44.000 9.40 0.00 44.01 3.18
2698 3397 6.459024 GAGCTCAACGTGAGATACTATGAACT 60.459 42.308 9.40 2.22 44.01 3.01
2699 3398 7.254829 GAGCTCAACGTGAGATACTATGAACTA 60.255 40.741 9.40 0.00 44.01 2.24
2701 3400 7.860918 TCAACGTGAGATACTATGAACTACT 57.139 36.000 0.00 0.00 0.00 2.57
2702 3401 7.917597 TCAACGTGAGATACTATGAACTACTC 58.082 38.462 0.00 0.00 0.00 2.59
2703 3402 7.551617 TCAACGTGAGATACTATGAACTACTCA 59.448 37.037 0.00 0.00 38.81 3.41
2704 3403 7.860918 ACGTGAGATACTATGAACTACTCAA 57.139 36.000 0.00 0.00 37.67 3.02
2705 3404 8.277490 ACGTGAGATACTATGAACTACTCAAA 57.723 34.615 0.00 0.00 37.67 2.69
2706 3405 8.737175 ACGTGAGATACTATGAACTACTCAAAA 58.263 33.333 0.00 0.00 37.67 2.44
2707 3406 9.569167 CGTGAGATACTATGAACTACTCAAAAA 57.431 33.333 0.00 0.00 37.67 1.94
2723 3422 2.101640 AAAAAGGGCCATGGAAGTGT 57.898 45.000 18.40 0.00 0.00 3.55
2724 3423 2.990740 AAAAGGGCCATGGAAGTGTA 57.009 45.000 18.40 0.00 0.00 2.90
2725 3424 3.473113 AAAAGGGCCATGGAAGTGTAT 57.527 42.857 18.40 0.00 0.00 2.29
2726 3425 4.601406 AAAAGGGCCATGGAAGTGTATA 57.399 40.909 18.40 0.00 0.00 1.47
2727 3426 3.864789 AAGGGCCATGGAAGTGTATAG 57.135 47.619 18.40 0.00 0.00 1.31
2728 3427 3.060479 AGGGCCATGGAAGTGTATAGA 57.940 47.619 18.40 0.00 0.00 1.98
2729 3428 2.975489 AGGGCCATGGAAGTGTATAGAG 59.025 50.000 18.40 0.00 0.00 2.43
2730 3429 2.972713 GGGCCATGGAAGTGTATAGAGA 59.027 50.000 18.40 0.00 0.00 3.10
2731 3430 3.391296 GGGCCATGGAAGTGTATAGAGAA 59.609 47.826 18.40 0.00 0.00 2.87
2732 3431 4.141482 GGGCCATGGAAGTGTATAGAGAAA 60.141 45.833 18.40 0.00 0.00 2.52
2733 3432 5.456763 GGGCCATGGAAGTGTATAGAGAAAT 60.457 44.000 18.40 0.00 0.00 2.17
2734 3433 5.471456 GGCCATGGAAGTGTATAGAGAAATG 59.529 44.000 18.40 0.00 0.00 2.32
2735 3434 5.049129 GCCATGGAAGTGTATAGAGAAATGC 60.049 44.000 18.40 0.00 0.00 3.56
2736 3435 5.178252 CCATGGAAGTGTATAGAGAAATGCG 59.822 44.000 5.56 0.00 0.00 4.73
2737 3436 5.339008 TGGAAGTGTATAGAGAAATGCGT 57.661 39.130 0.00 0.00 0.00 5.24
2738 3437 5.109210 TGGAAGTGTATAGAGAAATGCGTG 58.891 41.667 0.00 0.00 0.00 5.34
2739 3438 4.025647 GGAAGTGTATAGAGAAATGCGTGC 60.026 45.833 0.00 0.00 0.00 5.34
2740 3439 4.392921 AGTGTATAGAGAAATGCGTGCT 57.607 40.909 0.00 0.00 0.00 4.40
2741 3440 5.515797 AGTGTATAGAGAAATGCGTGCTA 57.484 39.130 0.00 0.00 0.00 3.49
2742 3441 5.524284 AGTGTATAGAGAAATGCGTGCTAG 58.476 41.667 0.00 0.00 0.00 3.42
2743 3442 5.299531 AGTGTATAGAGAAATGCGTGCTAGA 59.700 40.000 0.00 0.00 0.00 2.43
2744 3443 5.977725 GTGTATAGAGAAATGCGTGCTAGAA 59.022 40.000 0.00 0.00 0.00 2.10
2745 3444 5.977725 TGTATAGAGAAATGCGTGCTAGAAC 59.022 40.000 0.00 0.00 0.00 3.01
2746 3445 2.622436 AGAGAAATGCGTGCTAGAACC 58.378 47.619 0.00 0.00 0.00 3.62
2747 3446 1.324736 GAGAAATGCGTGCTAGAACCG 59.675 52.381 0.00 0.00 0.00 4.44
2748 3447 1.067142 AGAAATGCGTGCTAGAACCGA 60.067 47.619 0.00 0.00 0.00 4.69
2749 3448 1.324736 GAAATGCGTGCTAGAACCGAG 59.675 52.381 0.00 0.00 0.00 4.63
2750 3449 1.084370 AATGCGTGCTAGAACCGAGC 61.084 55.000 0.00 0.00 40.53 5.03
2751 3450 2.886124 GCGTGCTAGAACCGAGCC 60.886 66.667 0.00 0.00 39.30 4.70
2752 3451 2.202756 CGTGCTAGAACCGAGCCC 60.203 66.667 0.00 0.00 39.30 5.19
2753 3452 2.978824 GTGCTAGAACCGAGCCCA 59.021 61.111 0.00 0.00 39.30 5.36
2754 3453 1.295423 GTGCTAGAACCGAGCCCAA 59.705 57.895 0.00 0.00 39.30 4.12
2755 3454 0.321298 GTGCTAGAACCGAGCCCAAA 60.321 55.000 0.00 0.00 39.30 3.28
2756 3455 0.321298 TGCTAGAACCGAGCCCAAAC 60.321 55.000 0.00 0.00 39.30 2.93
2757 3456 1.359459 GCTAGAACCGAGCCCAAACG 61.359 60.000 0.00 0.00 33.60 3.60
2758 3457 0.037605 CTAGAACCGAGCCCAAACGT 60.038 55.000 0.00 0.00 0.00 3.99
2759 3458 0.320073 TAGAACCGAGCCCAAACGTG 60.320 55.000 0.00 0.00 0.00 4.49
2760 3459 3.249973 GAACCGAGCCCAAACGTGC 62.250 63.158 0.00 0.00 0.00 5.34
2761 3460 3.767630 AACCGAGCCCAAACGTGCT 62.768 57.895 0.00 0.00 41.42 4.40
2762 3461 3.726517 CCGAGCCCAAACGTGCTG 61.727 66.667 2.46 0.00 38.11 4.41
2763 3462 4.389576 CGAGCCCAAACGTGCTGC 62.390 66.667 2.46 0.00 38.11 5.25
2764 3463 2.980233 GAGCCCAAACGTGCTGCT 60.980 61.111 2.46 2.35 38.11 4.24
2765 3464 2.519302 AGCCCAAACGTGCTGCTT 60.519 55.556 0.00 0.00 36.23 3.91
2766 3465 2.075426 GAGCCCAAACGTGCTGCTTT 62.075 55.000 2.46 0.00 38.11 3.51
2767 3466 1.661509 GCCCAAACGTGCTGCTTTC 60.662 57.895 0.00 0.00 0.00 2.62
2768 3467 1.370414 CCCAAACGTGCTGCTTTCG 60.370 57.895 0.00 6.09 0.00 3.46
2769 3468 1.370414 CCAAACGTGCTGCTTTCGG 60.370 57.895 0.00 0.00 0.00 4.30
2770 3469 1.370414 CAAACGTGCTGCTTTCGGG 60.370 57.895 0.00 0.00 0.00 5.14
2771 3470 1.822186 AAACGTGCTGCTTTCGGGT 60.822 52.632 0.00 0.00 0.00 5.28
2772 3471 1.381165 AAACGTGCTGCTTTCGGGTT 61.381 50.000 0.00 0.56 0.00 4.11
2773 3472 1.782028 AACGTGCTGCTTTCGGGTTC 61.782 55.000 0.00 0.00 0.00 3.62
2774 3473 2.954611 GTGCTGCTTTCGGGTTCC 59.045 61.111 0.00 0.00 0.00 3.62
2775 3474 2.282180 TGCTGCTTTCGGGTTCCC 60.282 61.111 0.00 0.00 0.00 3.97
2776 3475 3.062466 GCTGCTTTCGGGTTCCCC 61.062 66.667 1.93 0.00 41.09 4.81
2777 3476 2.757077 CTGCTTTCGGGTTCCCCT 59.243 61.111 1.93 0.00 42.67 4.79
2778 3477 1.988015 CTGCTTTCGGGTTCCCCTA 59.012 57.895 1.93 0.00 42.67 3.53
2779 3478 0.326927 CTGCTTTCGGGTTCCCCTAA 59.673 55.000 1.93 0.00 42.67 2.69
2780 3479 0.326927 TGCTTTCGGGTTCCCCTAAG 59.673 55.000 1.93 7.17 42.67 2.18
2809 3508 0.037697 TGACCCGTGGACGAAATCAG 60.038 55.000 0.00 0.00 43.02 2.90
2859 3558 0.249953 TCACGCGGCTGACCTTTTTA 60.250 50.000 12.47 0.00 0.00 1.52
2888 3589 2.094659 CACGAAGGCGCCACACTAG 61.095 63.158 31.54 15.48 42.48 2.57
2889 3590 3.188786 CGAAGGCGCCACACTAGC 61.189 66.667 31.54 8.11 0.00 3.42
2894 3595 3.423154 GCGCCACACTAGCCACAC 61.423 66.667 0.00 0.00 0.00 3.82
2895 3596 2.343758 CGCCACACTAGCCACACT 59.656 61.111 0.00 0.00 0.00 3.55
2896 3597 1.589630 CGCCACACTAGCCACACTA 59.410 57.895 0.00 0.00 0.00 2.74
2897 3598 0.175760 CGCCACACTAGCCACACTAT 59.824 55.000 0.00 0.00 0.00 2.12
3111 3812 2.812591 GCTAGGCGCTACACTGTATAGA 59.187 50.000 7.64 0.00 35.14 1.98
3115 3816 2.617308 GGCGCTACACTGTATAGAGTGA 59.383 50.000 30.69 16.16 45.39 3.41
3129 3830 0.811915 GAGTGACGCCTAGCTCTCAA 59.188 55.000 0.00 0.00 0.00 3.02
3321 4023 5.873179 TTGATTTCGTCCATAGGTCAAAC 57.127 39.130 0.00 0.00 0.00 2.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 2.724349 CGCAAGCAGAATAGCATTTCC 58.276 47.619 0.00 0.00 36.85 3.13
69 82 7.391620 TCGAACCTAGACAAATGGATTAACTT 58.608 34.615 0.00 0.00 0.00 2.66
290 305 4.986659 GCTCAGCAAGTCATGAACAAAAAT 59.013 37.500 0.00 0.00 0.00 1.82
308 324 0.107993 ATGATGTCACACCGGCTCAG 60.108 55.000 0.00 0.00 0.00 3.35
316 332 2.349886 GAGCCGAAAGATGATGTCACAC 59.650 50.000 0.00 0.00 0.00 3.82
319 335 3.055891 TCTTGAGCCGAAAGATGATGTCA 60.056 43.478 0.00 0.00 0.00 3.58
405 427 3.004315 ACACAATGTTCGGTTCACCAATC 59.996 43.478 0.00 0.00 35.14 2.67
421 446 2.872245 CTGTGGACACGAAGAACACAAT 59.128 45.455 0.00 0.00 41.00 2.71
422 447 2.093921 TCTGTGGACACGAAGAACACAA 60.094 45.455 0.00 0.00 41.00 3.33
515 541 7.764443 ACACGCATTTAGAGAACATATTAGTGT 59.236 33.333 0.00 0.00 0.00 3.55
551 577 2.851263 ATTCCAACTACAAGCGACCA 57.149 45.000 0.00 0.00 0.00 4.02
566 592 7.228706 TGACTCAAGGTGAAAGTAAAGAATTCC 59.771 37.037 0.65 0.00 0.00 3.01
567 593 8.154649 TGACTCAAGGTGAAAGTAAAGAATTC 57.845 34.615 0.00 0.00 0.00 2.17
569 595 8.519799 TTTGACTCAAGGTGAAAGTAAAGAAT 57.480 30.769 0.00 0.00 0.00 2.40
572 598 7.707104 ACATTTGACTCAAGGTGAAAGTAAAG 58.293 34.615 11.24 0.00 34.79 1.85
573 599 7.639113 ACATTTGACTCAAGGTGAAAGTAAA 57.361 32.000 11.24 0.00 34.79 2.01
587 638 5.741388 AAGCAATCGGATACATTTGACTC 57.259 39.130 0.00 0.00 31.54 3.36
592 643 6.262944 TGCATCTTAAGCAATCGGATACATTT 59.737 34.615 0.00 0.00 39.39 2.32
596 647 4.511454 TGTGCATCTTAAGCAATCGGATAC 59.489 41.667 0.00 0.00 44.64 2.24
614 981 2.098934 ACGAGAAAATTGCACTTGTGCA 59.901 40.909 22.47 22.47 43.81 4.57
620 987 2.687935 ACAACCACGAGAAAATTGCACT 59.312 40.909 0.00 0.00 0.00 4.40
641 1081 0.177141 CGCCGGTAAGGATCCAGAAA 59.823 55.000 15.82 0.00 45.00 2.52
697 1137 2.480555 CATCGACAGCAAACGGGC 59.519 61.111 0.00 0.00 0.00 6.13
723 1163 2.740714 GGCAACGACCACATCTCGC 61.741 63.158 0.00 0.00 34.34 5.03
747 1189 3.055591 CAGATCTCGCCACATATCACAC 58.944 50.000 0.00 0.00 0.00 3.82
754 1197 2.507944 GCCCAGATCTCGCCACAT 59.492 61.111 0.00 0.00 0.00 3.21
805 1248 7.249147 AGTACTGCTACAACTGTACGAATTAG 58.751 38.462 0.00 0.00 44.84 1.73
838 1282 6.671879 GCTGTCTTAATCGAAAGCAGAAAGAG 60.672 42.308 17.78 2.34 42.58 2.85
841 1285 4.143115 CGCTGTCTTAATCGAAAGCAGAAA 60.143 41.667 17.78 2.74 43.08 2.52
842 1286 3.367932 CGCTGTCTTAATCGAAAGCAGAA 59.632 43.478 17.78 0.00 43.08 3.02
843 1287 2.923655 CGCTGTCTTAATCGAAAGCAGA 59.076 45.455 17.78 4.81 43.08 4.26
844 1288 2.535732 GCGCTGTCTTAATCGAAAGCAG 60.536 50.000 0.00 12.84 43.08 4.24
845 1289 1.393539 GCGCTGTCTTAATCGAAAGCA 59.606 47.619 0.00 0.00 43.08 3.91
846 1290 1.393539 TGCGCTGTCTTAATCGAAAGC 59.606 47.619 9.73 0.00 40.20 3.51
847 1291 2.668457 ACTGCGCTGTCTTAATCGAAAG 59.332 45.455 14.78 0.00 0.00 2.62
866 1310 3.938963 CACATAATCCAGCGGTAAACACT 59.061 43.478 0.00 0.00 0.00 3.55
886 1330 2.028112 TCCTGAACCATACAGAGCACAC 60.028 50.000 0.00 0.00 37.54 3.82
903 1347 5.358922 GTGATGAATTCTTCCTCTCTCCTG 58.641 45.833 16.36 0.00 0.00 3.86
940 1384 0.236449 GGAATTTCGCGTCCGTGTTT 59.764 50.000 5.77 0.00 35.54 2.83
945 1389 1.011968 TGTCAGGAATTTCGCGTCCG 61.012 55.000 5.77 2.66 39.06 4.79
946 1390 1.327764 GATGTCAGGAATTTCGCGTCC 59.672 52.381 5.77 5.54 0.00 4.79
947 1391 2.271800 AGATGTCAGGAATTTCGCGTC 58.728 47.619 5.77 0.00 0.00 5.19
950 1394 3.762779 CCAAAGATGTCAGGAATTTCGC 58.237 45.455 0.00 0.00 0.00 4.70
962 1406 3.721035 GCAAAGAAAGTGCCAAAGATGT 58.279 40.909 0.00 0.00 35.91 3.06
990 1434 2.595124 TGGAGCGAGCGATTTATTCA 57.405 45.000 0.00 0.00 0.00 2.57
991 1435 2.091277 CGATGGAGCGAGCGATTTATTC 59.909 50.000 0.00 0.00 0.00 1.75
992 1436 2.061773 CGATGGAGCGAGCGATTTATT 58.938 47.619 0.00 0.00 0.00 1.40
994 1438 0.666374 TCGATGGAGCGAGCGATTTA 59.334 50.000 0.00 0.00 35.01 1.40
995 1439 0.872021 GTCGATGGAGCGAGCGATTT 60.872 55.000 0.00 0.00 41.49 2.17
998 1442 2.824489 AGTCGATGGAGCGAGCGA 60.824 61.111 0.00 0.00 41.49 4.93
999 1443 2.653448 CAGTCGATGGAGCGAGCG 60.653 66.667 0.00 0.00 41.49 5.03
1000 1444 1.587613 GACAGTCGATGGAGCGAGC 60.588 63.158 0.00 0.00 41.49 5.03
1001 1445 0.524392 GTGACAGTCGATGGAGCGAG 60.524 60.000 0.00 0.00 41.49 5.03
1015 1459 2.335011 CGCGTGACCTGAGTGACA 59.665 61.111 0.00 0.00 29.40 3.58
1034 1478 0.249911 ACGAGAAACACAGACAGGGC 60.250 55.000 0.00 0.00 0.00 5.19
1038 1482 1.674441 ACGAGACGAGAAACACAGACA 59.326 47.619 0.00 0.00 0.00 3.41
1042 1486 1.266175 GGAGACGAGACGAGAAACACA 59.734 52.381 0.00 0.00 0.00 3.72
1043 1487 1.401278 GGGAGACGAGACGAGAAACAC 60.401 57.143 0.00 0.00 0.00 3.32
1045 1489 1.166989 AGGGAGACGAGACGAGAAAC 58.833 55.000 0.00 0.00 0.00 2.78
1046 1490 1.540267 CAAGGGAGACGAGACGAGAAA 59.460 52.381 0.00 0.00 0.00 2.52
1047 1491 1.166129 CAAGGGAGACGAGACGAGAA 58.834 55.000 0.00 0.00 0.00 2.87
1048 1492 1.306642 GCAAGGGAGACGAGACGAGA 61.307 60.000 0.00 0.00 0.00 4.04
1049 1493 1.137825 GCAAGGGAGACGAGACGAG 59.862 63.158 0.00 0.00 0.00 4.18
1050 1494 2.687805 CGCAAGGGAGACGAGACGA 61.688 63.158 0.00 0.00 0.00 4.20
1068 1536 2.035342 CGAGAATTTCGTGTCAGATCGC 60.035 50.000 0.00 0.00 44.27 4.58
1093 1608 0.392461 AGCGGATGTATGGTTGCGTT 60.392 50.000 0.00 0.00 0.00 4.84
1094 1609 0.392461 AAGCGGATGTATGGTTGCGT 60.392 50.000 0.00 0.00 0.00 5.24
1095 1610 0.304705 GAAGCGGATGTATGGTTGCG 59.695 55.000 0.00 0.00 0.00 4.85
1096 1611 0.663153 GGAAGCGGATGTATGGTTGC 59.337 55.000 0.00 0.00 0.00 4.17
1111 1632 1.783031 GCTGCTGATCGCCATGGAAG 61.783 60.000 18.40 8.79 38.05 3.46
1156 1677 3.047877 CGGTGGTGCTCGGGAAAC 61.048 66.667 0.00 0.00 0.00 2.78
1375 1915 1.873069 GCATCAGGAATGGAGAGCTCG 60.873 57.143 8.37 0.00 35.77 5.03
1388 1928 4.827087 AGCGCACCGAGCATCAGG 62.827 66.667 11.47 0.00 46.13 3.86
1410 1950 1.440850 CGGCACAACGCAATGTCAG 60.441 57.895 0.00 0.00 45.17 3.51
1414 1954 2.647381 GCAACGGCACAACGCAATG 61.647 57.895 0.00 0.00 45.17 2.82
1426 1969 2.046023 TCCTCCTGCATGCAACGG 60.046 61.111 22.88 20.04 0.00 4.44
1541 2084 2.503356 GGAGGAGAAGAAGGAGAATGCA 59.497 50.000 0.00 0.00 0.00 3.96
1543 2086 3.068024 CGAGGAGGAGAAGAAGGAGAATG 59.932 52.174 0.00 0.00 0.00 2.67
1549 2097 1.606668 CGATCGAGGAGGAGAAGAAGG 59.393 57.143 10.26 0.00 0.00 3.46
1561 2109 3.144120 CTGCCAGGGTCGATCGAGG 62.144 68.421 20.09 17.06 0.00 4.63
1574 2122 4.497984 AACGCACCACCACTGCCA 62.498 61.111 0.00 0.00 0.00 4.92
1577 2125 0.248866 GGAAAAACGCACCACCACTG 60.249 55.000 0.00 0.00 0.00 3.66
1586 2134 0.589223 CGGCAGTAAGGAAAAACGCA 59.411 50.000 0.00 0.00 0.00 5.24
1591 2169 1.944024 CACACACGGCAGTAAGGAAAA 59.056 47.619 0.00 0.00 0.00 2.29
1601 2179 3.201297 CAGCACACACACACGGCA 61.201 61.111 0.00 0.00 0.00 5.69
1602 2180 3.202001 ACAGCACACACACACGGC 61.202 61.111 0.00 0.00 0.00 5.68
1738 2329 2.513666 CGGGCATGCGTGTGGTAT 60.514 61.111 12.44 0.00 0.00 2.73
1762 2354 3.369157 CGGACTGAAGTAAGTAAAGGGGG 60.369 52.174 0.00 0.00 0.00 5.40
1765 2394 4.083110 TCGACGGACTGAAGTAAGTAAAGG 60.083 45.833 0.00 0.00 0.00 3.11
1766 2395 5.039480 TCGACGGACTGAAGTAAGTAAAG 57.961 43.478 0.00 0.00 0.00 1.85
1771 2400 4.036352 GCTATTCGACGGACTGAAGTAAG 58.964 47.826 0.00 0.00 0.00 2.34
1772 2401 3.693085 AGCTATTCGACGGACTGAAGTAA 59.307 43.478 0.00 0.00 0.00 2.24
1773 2402 3.276857 AGCTATTCGACGGACTGAAGTA 58.723 45.455 0.00 0.00 0.00 2.24
1774 2403 2.093106 AGCTATTCGACGGACTGAAGT 58.907 47.619 0.00 0.00 0.00 3.01
1775 2404 2.853731 AGCTATTCGACGGACTGAAG 57.146 50.000 0.00 0.00 0.00 3.02
1776 2405 2.033049 GCTAGCTATTCGACGGACTGAA 59.967 50.000 7.70 0.00 0.00 3.02
1777 2406 1.602851 GCTAGCTATTCGACGGACTGA 59.397 52.381 7.70 0.00 0.00 3.41
1778 2407 1.660614 CGCTAGCTATTCGACGGACTG 60.661 57.143 13.93 0.00 0.00 3.51
1779 2408 0.587285 CGCTAGCTATTCGACGGACT 59.413 55.000 13.93 0.00 0.00 3.85
1780 2409 0.997726 GCGCTAGCTATTCGACGGAC 60.998 60.000 13.93 0.00 41.01 4.79
1781 2410 1.281960 GCGCTAGCTATTCGACGGA 59.718 57.895 13.93 0.00 41.01 4.69
1782 2411 2.075489 CGCGCTAGCTATTCGACGG 61.075 63.158 13.93 0.00 42.32 4.79
1783 2412 2.698432 GCGCGCTAGCTATTCGACG 61.698 63.158 26.67 17.58 42.32 5.12
1784 2413 2.698432 CGCGCGCTAGCTATTCGAC 61.698 63.158 30.48 8.54 42.32 4.20
1785 2414 2.426916 CGCGCGCTAGCTATTCGA 60.427 61.111 30.48 0.00 42.32 3.71
1786 2415 3.461982 CCGCGCGCTAGCTATTCG 61.462 66.667 30.48 9.83 42.32 3.34
1787 2416 3.768293 GCCGCGCGCTAGCTATTC 61.768 66.667 30.48 3.21 42.32 1.75
1802 2431 3.659089 ATACGGAGGTGTGCACGCC 62.659 63.158 36.93 36.93 46.57 5.68
1803 2432 0.458889 TAATACGGAGGTGTGCACGC 60.459 55.000 22.19 22.19 0.00 5.34
1804 2433 1.999048 TTAATACGGAGGTGTGCACG 58.001 50.000 13.13 0.87 0.00 5.34
1805 2434 6.482308 AGATTTATTAATACGGAGGTGTGCAC 59.518 38.462 10.75 10.75 0.00 4.57
1806 2435 6.588204 AGATTTATTAATACGGAGGTGTGCA 58.412 36.000 0.00 0.00 0.00 4.57
1807 2436 6.704493 TGAGATTTATTAATACGGAGGTGTGC 59.296 38.462 0.00 0.00 0.00 4.57
1808 2437 7.926555 ACTGAGATTTATTAATACGGAGGTGTG 59.073 37.037 0.00 0.00 0.00 3.82
1809 2438 8.019656 ACTGAGATTTATTAATACGGAGGTGT 57.980 34.615 0.00 0.00 0.00 4.16
1810 2439 8.765219 CAACTGAGATTTATTAATACGGAGGTG 58.235 37.037 0.00 0.00 0.00 4.00
1811 2440 8.701895 TCAACTGAGATTTATTAATACGGAGGT 58.298 33.333 0.00 0.00 0.00 3.85
1812 2441 9.197694 CTCAACTGAGATTTATTAATACGGAGG 57.802 37.037 0.03 0.00 44.74 4.30
1813 2442 8.704234 GCTCAACTGAGATTTATTAATACGGAG 58.296 37.037 10.95 0.00 44.74 4.63
1814 2443 7.656137 GGCTCAACTGAGATTTATTAATACGGA 59.344 37.037 10.95 0.00 44.74 4.69
1815 2444 7.441157 TGGCTCAACTGAGATTTATTAATACGG 59.559 37.037 10.95 0.00 44.74 4.02
1816 2445 8.365399 TGGCTCAACTGAGATTTATTAATACG 57.635 34.615 10.95 0.00 44.74 3.06
1817 2446 8.286097 GCTGGCTCAACTGAGATTTATTAATAC 58.714 37.037 10.95 0.00 44.74 1.89
1818 2447 7.992608 TGCTGGCTCAACTGAGATTTATTAATA 59.007 33.333 10.95 0.00 44.74 0.98
1819 2448 6.830324 TGCTGGCTCAACTGAGATTTATTAAT 59.170 34.615 10.95 0.00 44.74 1.40
1820 2449 6.094048 GTGCTGGCTCAACTGAGATTTATTAA 59.906 38.462 10.95 0.00 44.74 1.40
1821 2450 5.586243 GTGCTGGCTCAACTGAGATTTATTA 59.414 40.000 10.95 0.00 44.74 0.98
1822 2451 4.397417 GTGCTGGCTCAACTGAGATTTATT 59.603 41.667 10.95 0.00 44.74 1.40
1823 2452 3.944015 GTGCTGGCTCAACTGAGATTTAT 59.056 43.478 10.95 0.00 44.74 1.40
1824 2453 3.338249 GTGCTGGCTCAACTGAGATTTA 58.662 45.455 10.95 0.00 44.74 1.40
1825 2454 2.157738 GTGCTGGCTCAACTGAGATTT 58.842 47.619 10.95 0.00 44.74 2.17
1829 2458 1.287730 GACGTGCTGGCTCAACTGAG 61.288 60.000 0.00 2.17 44.75 3.35
1842 2471 2.512301 GCAGCAGATCGAGACGTGC 61.512 63.158 0.00 0.00 36.10 5.34
1846 2475 0.871163 GAGCTGCAGCAGATCGAGAC 60.871 60.000 38.24 14.46 45.16 3.36
1847 2476 1.436748 GAGCTGCAGCAGATCGAGA 59.563 57.895 38.24 0.00 45.16 4.04
1848 2477 1.592131 GGAGCTGCAGCAGATCGAG 60.592 63.158 38.24 3.65 46.36 4.04
1849 2478 1.891722 TTGGAGCTGCAGCAGATCGA 61.892 55.000 38.24 25.14 46.36 3.59
1851 2480 0.107800 TCTTGGAGCTGCAGCAGATC 60.108 55.000 38.24 29.19 44.92 2.75
1853 2482 1.004080 GTCTTGGAGCTGCAGCAGA 60.004 57.895 38.24 28.31 45.16 4.26
1854 2483 0.605860 AAGTCTTGGAGCTGCAGCAG 60.606 55.000 38.24 26.56 45.16 4.24
1855 2484 0.887836 CAAGTCTTGGAGCTGCAGCA 60.888 55.000 38.24 17.55 45.16 4.41
1856 2485 1.874562 CAAGTCTTGGAGCTGCAGC 59.125 57.895 31.53 31.53 42.49 5.25
1954 2593 9.140286 CTCTTAAATTAAACTAGCCCAAAAAGC 57.860 33.333 0.00 0.00 0.00 3.51
1983 2626 2.355412 CCTGTTCAGCCATCATGACAGA 60.355 50.000 0.00 0.00 32.38 3.41
2048 2694 2.419198 GGCTCGATGGCAGATCGT 59.581 61.111 14.79 0.00 41.77 3.73
2069 2715 2.906354 AGTTAAGATGCCATGTCGGAC 58.094 47.619 0.00 0.00 36.56 4.79
2082 2728 7.223387 GTCTCTGAAAACACGGTTAAGTTAAGA 59.777 37.037 0.00 0.00 0.00 2.10
2112 2758 3.412624 GAGGATGGGCAGGTGCTCC 62.413 68.421 0.00 0.00 41.95 4.70
2127 2773 3.737172 CAAAACCCAGCGCCGAGG 61.737 66.667 2.29 4.84 0.00 4.63
2128 2774 3.737172 CCAAAACCCAGCGCCGAG 61.737 66.667 2.29 0.00 0.00 4.63
2159 2805 2.560542 CGGTCCTATGGGATGAGAAGAG 59.439 54.545 0.00 0.00 44.33 2.85
2162 2808 1.219469 TCCGGTCCTATGGGATGAGAA 59.781 52.381 0.00 0.00 44.33 2.87
2165 2811 0.178932 CCTCCGGTCCTATGGGATGA 60.179 60.000 0.00 0.00 44.33 2.92
2166 2812 1.831652 GCCTCCGGTCCTATGGGATG 61.832 65.000 0.00 0.00 44.33 3.51
2167 2813 1.536662 GCCTCCGGTCCTATGGGAT 60.537 63.158 0.00 0.00 44.33 3.85
2168 2814 2.122989 GCCTCCGGTCCTATGGGA 60.123 66.667 0.00 0.00 39.70 4.37
2169 2815 1.632018 TTTGCCTCCGGTCCTATGGG 61.632 60.000 0.00 0.00 0.00 4.00
2170 2816 0.474184 ATTTGCCTCCGGTCCTATGG 59.526 55.000 0.00 0.00 0.00 2.74
2171 2817 2.222027 GAATTTGCCTCCGGTCCTATG 58.778 52.381 0.00 0.00 0.00 2.23
2172 2818 1.843851 TGAATTTGCCTCCGGTCCTAT 59.156 47.619 0.00 0.00 0.00 2.57
2173 2819 1.209504 CTGAATTTGCCTCCGGTCCTA 59.790 52.381 0.00 0.00 0.00 2.94
2174 2820 0.035056 CTGAATTTGCCTCCGGTCCT 60.035 55.000 0.00 0.00 0.00 3.85
2175 2821 1.657751 GCTGAATTTGCCTCCGGTCC 61.658 60.000 0.00 0.00 0.00 4.46
2176 2822 0.678048 AGCTGAATTTGCCTCCGGTC 60.678 55.000 0.00 0.00 0.00 4.79
2177 2823 0.618458 TAGCTGAATTTGCCTCCGGT 59.382 50.000 0.00 0.00 0.00 5.28
2178 2824 1.303309 CTAGCTGAATTTGCCTCCGG 58.697 55.000 0.00 0.00 0.00 5.14
2179 2825 1.667724 CACTAGCTGAATTTGCCTCCG 59.332 52.381 0.00 0.00 0.00 4.63
2180 2826 1.403323 GCACTAGCTGAATTTGCCTCC 59.597 52.381 0.00 0.00 37.91 4.30
2205 2851 7.539712 TTACATAAATGCTCAGAGCTTACAC 57.460 36.000 23.15 0.00 42.97 2.90
2273 2919 1.663135 GAAATGTGCTCGGAGCTTCTC 59.337 52.381 28.42 16.69 42.97 2.87
2324 2971 1.063174 GACAGAGCCATGCATTTCGAC 59.937 52.381 0.00 0.00 0.00 4.20
2338 2985 0.322648 TGTGGCATCACTGGACAGAG 59.677 55.000 6.29 0.00 43.94 3.35
2351 2998 1.679641 CATGCTGGGATGTGTGGCA 60.680 57.895 0.00 0.00 37.32 4.92
2365 3016 0.527565 ACACCCAGAAAATCGCATGC 59.472 50.000 7.91 7.91 0.00 4.06
2384 3035 5.568825 GCTTCACCTACTTGATGTTACCAGA 60.569 44.000 0.00 0.00 0.00 3.86
2385 3036 4.631813 GCTTCACCTACTTGATGTTACCAG 59.368 45.833 0.00 0.00 0.00 4.00
2386 3037 4.564821 GGCTTCACCTACTTGATGTTACCA 60.565 45.833 0.00 0.00 34.51 3.25
2395 3087 4.008074 TCTCTTTGGCTTCACCTACTTG 57.992 45.455 0.00 0.00 40.22 3.16
2401 3093 3.679389 TCTGAATCTCTTTGGCTTCACC 58.321 45.455 0.00 0.00 39.84 4.02
2417 3109 1.982612 CGCACGATCACTTCTCTGAA 58.017 50.000 0.00 0.00 0.00 3.02
2430 3122 4.961511 AGGAGTTTGCGCGCACGA 62.962 61.111 36.72 23.13 43.93 4.35
2431 3123 4.724697 CAGGAGTTTGCGCGCACG 62.725 66.667 36.72 13.96 44.07 5.34
2438 3130 3.741476 CCAGCGGCAGGAGTTTGC 61.741 66.667 5.33 0.00 43.34 3.68
2441 3133 1.152756 AAAACCAGCGGCAGGAGTT 60.153 52.632 19.03 8.66 0.00 3.01
2443 3135 1.898574 ACAAAACCAGCGGCAGGAG 60.899 57.895 19.03 7.30 0.00 3.69
2451 3143 1.952193 AAATGTGCCACAAAACCAGC 58.048 45.000 0.00 0.00 0.00 4.85
2452 3144 3.269178 ACAAAATGTGCCACAAAACCAG 58.731 40.909 0.00 0.00 0.00 4.00
2453 3145 3.340814 ACAAAATGTGCCACAAAACCA 57.659 38.095 0.00 0.00 0.00 3.67
2454 3146 4.213059 CCATACAAAATGTGCCACAAAACC 59.787 41.667 0.00 0.00 0.00 3.27
2455 3147 4.319405 GCCATACAAAATGTGCCACAAAAC 60.319 41.667 0.00 0.00 0.00 2.43
2456 3148 3.812053 GCCATACAAAATGTGCCACAAAA 59.188 39.130 0.00 0.00 0.00 2.44
2457 3149 3.181462 TGCCATACAAAATGTGCCACAAA 60.181 39.130 0.00 0.00 0.00 2.83
2458 3150 2.366590 TGCCATACAAAATGTGCCACAA 59.633 40.909 0.00 0.00 0.00 3.33
2459 3151 1.966354 TGCCATACAAAATGTGCCACA 59.034 42.857 0.00 0.00 0.00 4.17
2461 3153 3.369261 GGAATGCCATACAAAATGTGCCA 60.369 43.478 0.00 0.00 0.00 4.92
2462 3154 3.197265 GGAATGCCATACAAAATGTGCC 58.803 45.455 0.00 0.00 0.00 5.01
2463 3155 2.859538 CGGAATGCCATACAAAATGTGC 59.140 45.455 0.00 0.00 0.00 4.57
2464 3156 3.130164 TCCGGAATGCCATACAAAATGTG 59.870 43.478 0.00 0.00 0.00 3.21
2465 3157 3.360867 TCCGGAATGCCATACAAAATGT 58.639 40.909 0.00 0.00 0.00 2.71
2467 3159 3.960102 ACATCCGGAATGCCATACAAAAT 59.040 39.130 9.01 0.00 39.12 1.82
2468 3160 3.130164 CACATCCGGAATGCCATACAAAA 59.870 43.478 9.01 0.00 39.12 2.44
2469 3161 2.687425 CACATCCGGAATGCCATACAAA 59.313 45.455 9.01 0.00 39.12 2.83
2470 3162 2.296792 CACATCCGGAATGCCATACAA 58.703 47.619 9.01 0.00 39.12 2.41
2473 3165 3.019964 GCACATCCGGAATGCCATA 57.980 52.632 26.21 0.00 39.12 2.74
2474 3166 3.846180 GCACATCCGGAATGCCAT 58.154 55.556 26.21 0.00 39.12 4.40
2477 3169 1.718757 GACTGGCACATCCGGAATGC 61.719 60.000 27.78 27.78 44.37 3.56
2478 3170 0.392863 TGACTGGCACATCCGGAATG 60.393 55.000 9.01 11.85 44.37 2.67
2479 3171 0.392998 GTGACTGGCACATCCGGAAT 60.393 55.000 9.01 0.00 46.91 3.01
2480 3172 1.003839 GTGACTGGCACATCCGGAA 60.004 57.895 9.01 0.00 46.91 4.30
2481 3173 2.662596 GTGACTGGCACATCCGGA 59.337 61.111 6.61 6.61 46.91 5.14
2489 3181 2.164338 TGTACGTATGAGTGACTGGCA 58.836 47.619 0.00 0.00 0.00 4.92
2492 3184 5.516696 CCAAGAATGTACGTATGAGTGACTG 59.483 44.000 0.00 0.00 0.00 3.51
2495 3187 4.464951 ACCCAAGAATGTACGTATGAGTGA 59.535 41.667 0.00 0.00 0.00 3.41
2496 3188 4.566759 CACCCAAGAATGTACGTATGAGTG 59.433 45.833 0.00 0.00 0.00 3.51
2497 3189 4.755411 CACCCAAGAATGTACGTATGAGT 58.245 43.478 0.00 0.00 0.00 3.41
2498 3190 3.555956 GCACCCAAGAATGTACGTATGAG 59.444 47.826 0.00 0.00 0.00 2.90
2505 3197 1.271926 ACCAGGCACCCAAGAATGTAC 60.272 52.381 0.00 0.00 0.00 2.90
2507 3199 1.072266 TACCAGGCACCCAAGAATGT 58.928 50.000 0.00 0.00 0.00 2.71
2516 3208 2.172717 ACATACCAGATTACCAGGCACC 59.827 50.000 0.00 0.00 0.00 5.01
2519 3211 2.364324 TCGACATACCAGATTACCAGGC 59.636 50.000 0.00 0.00 0.00 4.85
2520 3212 3.383505 TGTCGACATACCAGATTACCAGG 59.616 47.826 15.76 0.00 0.00 4.45
2521 3213 4.360563 GTGTCGACATACCAGATTACCAG 58.639 47.826 23.12 0.00 0.00 4.00
2522 3214 3.181494 CGTGTCGACATACCAGATTACCA 60.181 47.826 23.12 0.00 0.00 3.25
2526 3218 3.146618 GACGTGTCGACATACCAGATT 57.853 47.619 23.12 0.00 0.00 2.40
2527 3219 2.846039 GACGTGTCGACATACCAGAT 57.154 50.000 23.12 2.25 0.00 2.90
2550 3242 0.413832 AAGCTCTGGTCCTAGTCCCA 59.586 55.000 0.00 0.00 0.00 4.37
2551 3243 1.208293 CAAAGCTCTGGTCCTAGTCCC 59.792 57.143 0.00 0.00 0.00 4.46
2595 3287 1.202486 GGAACGGAATGATGTCGCCTA 60.202 52.381 0.00 0.00 0.00 3.93
2630 3322 4.263572 TCGTGTGGTGGGGGCTTG 62.264 66.667 0.00 0.00 0.00 4.01
2631 3323 3.953775 CTCGTGTGGTGGGGGCTT 61.954 66.667 0.00 0.00 0.00 4.35
2633 3325 4.265056 AACTCGTGTGGTGGGGGC 62.265 66.667 0.00 0.00 0.00 5.80
2634 3326 2.032071 GAACTCGTGTGGTGGGGG 59.968 66.667 0.00 0.00 0.00 5.40
2664 3363 3.797546 GTTGAGCTCTGCTGCGCC 61.798 66.667 16.19 0.00 39.88 6.53
2665 3364 4.144681 CGTTGAGCTCTGCTGCGC 62.145 66.667 16.19 0.00 39.88 6.09
2666 3365 2.736236 ACGTTGAGCTCTGCTGCG 60.736 61.111 16.19 13.53 39.88 5.18
2667 3366 1.624865 CTCACGTTGAGCTCTGCTGC 61.625 60.000 16.19 0.00 39.88 5.25
2668 3367 0.038801 TCTCACGTTGAGCTCTGCTG 60.039 55.000 16.19 5.20 43.95 4.41
2669 3368 0.894141 ATCTCACGTTGAGCTCTGCT 59.106 50.000 16.19 0.00 43.95 4.24
2670 3369 2.159310 AGTATCTCACGTTGAGCTCTGC 60.159 50.000 16.19 6.65 43.95 4.26
2671 3370 3.773860 AGTATCTCACGTTGAGCTCTG 57.226 47.619 16.19 4.71 43.95 3.35
2672 3371 5.126779 TCATAGTATCTCACGTTGAGCTCT 58.873 41.667 16.19 0.00 43.95 4.09
2673 3372 5.425577 TCATAGTATCTCACGTTGAGCTC 57.574 43.478 6.82 6.82 43.95 4.09
2674 3373 5.358442 AGTTCATAGTATCTCACGTTGAGCT 59.642 40.000 9.34 0.00 43.95 4.09
2675 3374 5.583495 AGTTCATAGTATCTCACGTTGAGC 58.417 41.667 9.34 0.00 43.95 4.26
2676 3375 7.921787 AGTAGTTCATAGTATCTCACGTTGAG 58.078 38.462 8.24 8.24 45.59 3.02
2677 3376 7.551617 TGAGTAGTTCATAGTATCTCACGTTGA 59.448 37.037 0.00 0.00 0.00 3.18
2678 3377 7.694886 TGAGTAGTTCATAGTATCTCACGTTG 58.305 38.462 0.00 0.00 0.00 4.10
2679 3378 7.860918 TGAGTAGTTCATAGTATCTCACGTT 57.139 36.000 0.00 0.00 0.00 3.99
2680 3379 7.860918 TTGAGTAGTTCATAGTATCTCACGT 57.139 36.000 0.00 0.00 35.27 4.49
2681 3380 9.569167 TTTTTGAGTAGTTCATAGTATCTCACG 57.431 33.333 0.00 0.00 35.27 4.35
2704 3403 2.101640 ACACTTCCATGGCCCTTTTT 57.898 45.000 6.96 0.00 0.00 1.94
2705 3404 2.990740 TACACTTCCATGGCCCTTTT 57.009 45.000 6.96 0.00 0.00 2.27
2706 3405 3.785887 TCTATACACTTCCATGGCCCTTT 59.214 43.478 6.96 0.00 0.00 3.11
2707 3406 3.392616 CTCTATACACTTCCATGGCCCTT 59.607 47.826 6.96 0.00 0.00 3.95
2708 3407 2.975489 CTCTATACACTTCCATGGCCCT 59.025 50.000 6.96 0.00 0.00 5.19
2709 3408 2.972713 TCTCTATACACTTCCATGGCCC 59.027 50.000 6.96 0.00 0.00 5.80
2710 3409 4.689612 TTCTCTATACACTTCCATGGCC 57.310 45.455 6.96 0.00 0.00 5.36
2711 3410 5.049129 GCATTTCTCTATACACTTCCATGGC 60.049 44.000 6.96 0.00 0.00 4.40
2712 3411 5.178252 CGCATTTCTCTATACACTTCCATGG 59.822 44.000 4.97 4.97 0.00 3.66
2713 3412 5.755375 ACGCATTTCTCTATACACTTCCATG 59.245 40.000 0.00 0.00 0.00 3.66
2714 3413 5.755375 CACGCATTTCTCTATACACTTCCAT 59.245 40.000 0.00 0.00 0.00 3.41
2715 3414 5.109210 CACGCATTTCTCTATACACTTCCA 58.891 41.667 0.00 0.00 0.00 3.53
2716 3415 4.025647 GCACGCATTTCTCTATACACTTCC 60.026 45.833 0.00 0.00 0.00 3.46
2717 3416 4.806247 AGCACGCATTTCTCTATACACTTC 59.194 41.667 0.00 0.00 0.00 3.01
2718 3417 4.759782 AGCACGCATTTCTCTATACACTT 58.240 39.130 0.00 0.00 0.00 3.16
2719 3418 4.392921 AGCACGCATTTCTCTATACACT 57.607 40.909 0.00 0.00 0.00 3.55
2720 3419 5.520632 TCTAGCACGCATTTCTCTATACAC 58.479 41.667 0.00 0.00 0.00 2.90
2721 3420 5.767816 TCTAGCACGCATTTCTCTATACA 57.232 39.130 0.00 0.00 0.00 2.29
2722 3421 5.402867 GGTTCTAGCACGCATTTCTCTATAC 59.597 44.000 0.00 0.00 0.00 1.47
2723 3422 5.529791 GGTTCTAGCACGCATTTCTCTATA 58.470 41.667 0.00 0.00 0.00 1.31
2724 3423 4.372656 GGTTCTAGCACGCATTTCTCTAT 58.627 43.478 0.00 0.00 0.00 1.98
2725 3424 3.733988 CGGTTCTAGCACGCATTTCTCTA 60.734 47.826 0.00 0.00 0.00 2.43
2726 3425 2.622436 GGTTCTAGCACGCATTTCTCT 58.378 47.619 0.00 0.00 0.00 3.10
2727 3426 1.324736 CGGTTCTAGCACGCATTTCTC 59.675 52.381 0.00 0.00 0.00 2.87
2728 3427 1.067142 TCGGTTCTAGCACGCATTTCT 60.067 47.619 0.00 0.00 0.00 2.52
2729 3428 1.324736 CTCGGTTCTAGCACGCATTTC 59.675 52.381 0.00 0.00 0.00 2.17
2730 3429 1.359848 CTCGGTTCTAGCACGCATTT 58.640 50.000 0.00 0.00 0.00 2.32
2731 3430 1.084370 GCTCGGTTCTAGCACGCATT 61.084 55.000 0.00 0.00 39.83 3.56
2732 3431 1.519455 GCTCGGTTCTAGCACGCAT 60.519 57.895 0.00 0.00 39.83 4.73
2733 3432 2.126071 GCTCGGTTCTAGCACGCA 60.126 61.111 0.00 0.00 39.83 5.24
2734 3433 2.886124 GGCTCGGTTCTAGCACGC 60.886 66.667 0.00 0.00 41.93 5.34
2735 3434 2.202756 GGGCTCGGTTCTAGCACG 60.203 66.667 0.00 0.00 41.93 5.34
2736 3435 0.321298 TTTGGGCTCGGTTCTAGCAC 60.321 55.000 0.00 0.00 43.95 4.40
2737 3436 0.321298 GTTTGGGCTCGGTTCTAGCA 60.321 55.000 0.00 0.00 41.93 3.49
2738 3437 1.359459 CGTTTGGGCTCGGTTCTAGC 61.359 60.000 0.00 0.00 39.33 3.42
2739 3438 0.037605 ACGTTTGGGCTCGGTTCTAG 60.038 55.000 0.00 0.00 0.00 2.43
2740 3439 0.320073 CACGTTTGGGCTCGGTTCTA 60.320 55.000 0.00 0.00 0.00 2.10
2741 3440 1.597027 CACGTTTGGGCTCGGTTCT 60.597 57.895 0.00 0.00 0.00 3.01
2742 3441 2.943653 CACGTTTGGGCTCGGTTC 59.056 61.111 0.00 0.00 0.00 3.62
2743 3442 3.284449 GCACGTTTGGGCTCGGTT 61.284 61.111 0.00 0.00 0.00 4.44
2744 3443 4.250305 AGCACGTTTGGGCTCGGT 62.250 61.111 0.00 0.00 34.76 4.69
2745 3444 3.726517 CAGCACGTTTGGGCTCGG 61.727 66.667 0.00 0.00 38.56 4.63
2746 3445 4.389576 GCAGCACGTTTGGGCTCG 62.390 66.667 0.00 0.00 38.56 5.03
2747 3446 2.075426 AAAGCAGCACGTTTGGGCTC 62.075 55.000 0.00 0.00 38.56 4.70
2748 3447 2.075426 GAAAGCAGCACGTTTGGGCT 62.075 55.000 0.00 0.00 42.06 5.19
2749 3448 1.661509 GAAAGCAGCACGTTTGGGC 60.662 57.895 0.00 0.00 0.00 5.36
2750 3449 1.370414 CGAAAGCAGCACGTTTGGG 60.370 57.895 0.00 0.00 0.00 4.12
2751 3450 1.370414 CCGAAAGCAGCACGTTTGG 60.370 57.895 0.00 0.00 35.32 3.28
2752 3451 1.370414 CCCGAAAGCAGCACGTTTG 60.370 57.895 0.00 0.00 0.00 2.93
2753 3452 1.381165 AACCCGAAAGCAGCACGTTT 61.381 50.000 0.00 0.00 0.00 3.60
2754 3453 1.782028 GAACCCGAAAGCAGCACGTT 61.782 55.000 0.00 0.00 0.00 3.99
2755 3454 2.203153 AACCCGAAAGCAGCACGT 60.203 55.556 0.00 0.00 0.00 4.49
2756 3455 2.556287 GAACCCGAAAGCAGCACG 59.444 61.111 0.00 0.00 0.00 5.34
2757 3456 2.954611 GGAACCCGAAAGCAGCAC 59.045 61.111 0.00 0.00 0.00 4.40
2770 3469 1.182667 AATTTGCCGCTTAGGGGAAC 58.817 50.000 19.89 2.74 37.11 3.62
2771 3470 1.548269 CAAATTTGCCGCTTAGGGGAA 59.452 47.619 19.89 5.54 41.48 3.97
2772 3471 1.181786 CAAATTTGCCGCTTAGGGGA 58.818 50.000 19.89 0.00 41.48 4.81
2773 3472 1.135112 GTCAAATTTGCCGCTTAGGGG 60.135 52.381 13.54 11.25 41.48 4.79
2774 3473 1.135112 GGTCAAATTTGCCGCTTAGGG 60.135 52.381 13.54 0.00 41.48 3.53
2775 3474 1.135112 GGGTCAAATTTGCCGCTTAGG 60.135 52.381 13.54 0.00 44.97 2.69
2776 3475 1.467374 CGGGTCAAATTTGCCGCTTAG 60.467 52.381 19.73 0.93 29.59 2.18
2777 3476 0.523966 CGGGTCAAATTTGCCGCTTA 59.476 50.000 19.73 0.00 29.59 3.09
2778 3477 1.288752 CGGGTCAAATTTGCCGCTT 59.711 52.632 19.73 0.00 29.59 4.68
2779 3478 1.901464 ACGGGTCAAATTTGCCGCT 60.901 52.632 27.06 16.47 37.34 5.52
2780 3479 1.732683 CACGGGTCAAATTTGCCGC 60.733 57.895 27.06 18.38 37.34 6.53
2809 3508 3.063997 CACGGGCAGTTTATTCTGTGATC 59.936 47.826 0.00 0.00 38.40 2.92
2859 3558 1.079819 CCTTCGTGTCAGGCGTCAT 60.080 57.895 0.00 0.00 0.00 3.06
2888 3589 1.393539 CGTTGCACAGTATAGTGTGGC 59.606 52.381 32.04 25.41 46.73 5.01
2889 3590 1.393539 GCGTTGCACAGTATAGTGTGG 59.606 52.381 32.04 20.63 46.73 4.17
2891 3592 1.275291 AGGCGTTGCACAGTATAGTGT 59.725 47.619 7.42 7.42 41.52 3.55
2892 3593 1.927174 GAGGCGTTGCACAGTATAGTG 59.073 52.381 6.00 6.00 42.37 2.74
2893 3594 1.548719 TGAGGCGTTGCACAGTATAGT 59.451 47.619 0.00 0.00 0.00 2.12
2894 3595 1.927174 GTGAGGCGTTGCACAGTATAG 59.073 52.381 0.00 0.00 35.19 1.31
2895 3596 1.273886 TGTGAGGCGTTGCACAGTATA 59.726 47.619 0.00 0.00 39.86 1.47
2896 3597 0.034756 TGTGAGGCGTTGCACAGTAT 59.965 50.000 0.00 0.00 39.86 2.12
2897 3598 1.443828 TGTGAGGCGTTGCACAGTA 59.556 52.632 0.00 0.00 39.86 2.74
2947 3648 2.562738 GCAATTTTTAGGCAGTCTGGGT 59.437 45.455 1.14 0.00 0.00 4.51
3111 3812 0.814457 CTTGAGAGCTAGGCGTCACT 59.186 55.000 0.00 0.00 0.00 3.41
3115 3816 2.492090 CGCTTGAGAGCTAGGCGT 59.508 61.111 3.52 0.00 46.96 5.68
3129 3830 0.668706 CTAAGTCAGTGTGCAGCGCT 60.669 55.000 2.64 2.64 38.72 5.92
3208 3910 0.588252 GCCACACTACACTGTGCAAG 59.412 55.000 7.90 8.37 40.33 4.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.