Multiple sequence alignment - TraesCS3D01G346100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G346100 chr3D 100.000 2883 0 0 1 2883 457400627 457403509 0.000000e+00 5325.0
1 TraesCS3D01G346100 chr3D 87.931 116 6 8 145 256 457400882 457400771 2.330000e-26 130.0
2 TraesCS3D01G346100 chr3D 90.909 99 1 3 152 243 587947371 587947468 3.020000e-25 126.0
3 TraesCS3D01G346100 chr3D 100.000 57 0 0 79 135 457400761 457400817 3.930000e-19 106.0
4 TraesCS3D01G346100 chr3D 95.000 40 1 1 96 135 587947371 587947409 8.630000e-06 62.1
5 TraesCS3D01G346100 chr3B 90.794 1575 66 30 741 2302 605012359 605013867 0.000000e+00 2032.0
6 TraesCS3D01G346100 chr3B 91.608 572 31 12 2320 2880 605013851 605014416 0.000000e+00 774.0
7 TraesCS3D01G346100 chr3B 81.771 384 40 14 327 699 604773836 604774200 7.810000e-76 294.0
8 TraesCS3D01G346100 chr3B 81.132 265 22 10 332 580 605012117 605012369 1.360000e-43 187.0
9 TraesCS3D01G346100 chr3B 97.531 81 1 1 161 240 825250108 825250028 1.390000e-28 137.0
10 TraesCS3D01G346100 chr3B 96.429 84 2 1 161 243 825250029 825250112 1.390000e-28 137.0
11 TraesCS3D01G346100 chr3B 86.364 88 8 2 9 96 604773584 604773667 3.060000e-15 93.5
12 TraesCS3D01G346100 chr3A 89.082 1612 82 31 729 2302 600314884 600316439 0.000000e+00 1916.0
13 TraesCS3D01G346100 chr3A 94.565 460 15 7 2432 2883 600316613 600317070 0.000000e+00 702.0
14 TraesCS3D01G346100 chr3A 81.419 296 23 12 337 622 600086403 600086676 2.250000e-51 213.0
15 TraesCS3D01G346100 chr3A 90.351 114 7 2 2320 2433 600316423 600316532 2.310000e-31 147.0
16 TraesCS3D01G346100 chr3A 87.500 96 8 2 1 96 600086124 600086215 1.090000e-19 108.0
17 TraesCS3D01G346100 chr2B 94.505 91 3 2 153 242 111604721 111604632 3.870000e-29 139.0
18 TraesCS3D01G346100 chr2B 94.872 39 1 1 97 135 55203863 55203900 3.100000e-05 60.2
19 TraesCS3D01G346100 chr6B 95.402 87 3 1 157 242 30310326 30310412 1.390000e-28 137.0
20 TraesCS3D01G346100 chr7D 92.473 93 5 2 150 242 439239129 439239039 6.480000e-27 132.0
21 TraesCS3D01G346100 chr6D 93.333 90 4 2 151 239 207267942 207268030 6.480000e-27 132.0
22 TraesCS3D01G346100 chr4B 81.690 142 14 4 105 240 282239924 282239789 1.090000e-19 108.0
23 TraesCS3D01G346100 chr1D 100.000 35 0 0 101 135 26599971 26600005 6.670000e-07 65.8
24 TraesCS3D01G346100 chr1D 92.683 41 2 1 96 135 160423947 160423907 1.120000e-04 58.4
25 TraesCS3D01G346100 chr1B 91.667 48 2 2 89 135 345408290 345408244 6.670000e-07 65.8
26 TraesCS3D01G346100 chr4A 94.872 39 0 2 98 135 724508404 724508367 3.100000e-05 60.2
27 TraesCS3D01G346100 chr2A 92.683 41 2 1 95 135 725910436 725910397 1.120000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G346100 chr3D 457400627 457403509 2882 False 2715.500000 5325 100.000000 1 2883 2 chr3D.!!$F1 2882
1 TraesCS3D01G346100 chr3B 605012117 605014416 2299 False 997.666667 2032 87.844667 332 2880 3 chr3B.!!$F3 2548
2 TraesCS3D01G346100 chr3A 600314884 600317070 2186 False 921.666667 1916 91.332667 729 2883 3 chr3A.!!$F2 2154

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
120 121 0.032017 AGCTACTTCCTCCGTCCCAT 60.032 55.0 0.0 0.0 0.00 4.00 F
176 177 0.032017 AGCTACTTCCTCCGTCCCAT 60.032 55.0 0.0 0.0 0.00 4.00 F
449 465 0.040425 GGTTGTTGATCACACCACGC 60.040 55.0 11.5 0.0 33.98 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1330 1373 0.693049 AGTGGAGGTGTGGATGGAAC 59.307 55.0 0.00 0.0 0.00 3.62 R
1348 1391 0.737715 CTCGCCGGTGGAGAAGAAAG 60.738 60.0 16.49 0.0 29.80 2.62 R
2322 2384 0.253044 TGCATGGACTTACCTGGAGC 59.747 55.0 0.00 0.0 39.86 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 3.692690 GGTACCATTTAGGCCAAACTCA 58.307 45.455 7.15 0.00 43.14 3.41
32 33 4.083565 GGTACCATTTAGGCCAAACTCAA 58.916 43.478 7.15 0.00 43.14 3.02
33 34 4.525100 GGTACCATTTAGGCCAAACTCAAA 59.475 41.667 7.15 0.00 43.14 2.69
34 35 5.011227 GGTACCATTTAGGCCAAACTCAAAA 59.989 40.000 7.15 0.00 43.14 2.44
35 36 5.823861 ACCATTTAGGCCAAACTCAAAAT 57.176 34.783 5.01 0.00 43.14 1.82
36 37 5.550290 ACCATTTAGGCCAAACTCAAAATG 58.450 37.500 5.01 8.83 43.14 2.32
37 38 5.071653 ACCATTTAGGCCAAACTCAAAATGT 59.928 36.000 5.01 0.00 43.14 2.71
38 39 5.997129 CCATTTAGGCCAAACTCAAAATGTT 59.003 36.000 5.01 0.00 34.20 2.71
39 40 6.073112 CCATTTAGGCCAAACTCAAAATGTTG 60.073 38.462 5.01 0.00 34.20 3.33
40 41 3.473923 AGGCCAAACTCAAAATGTTGG 57.526 42.857 5.01 0.00 35.29 3.77
41 42 2.104622 AGGCCAAACTCAAAATGTTGGG 59.895 45.455 5.01 0.00 41.42 4.12
42 43 2.103941 GGCCAAACTCAAAATGTTGGGA 59.896 45.455 1.37 0.00 40.12 4.37
43 44 3.130633 GCCAAACTCAAAATGTTGGGAC 58.869 45.455 1.37 0.00 40.12 4.46
44 45 3.181466 GCCAAACTCAAAATGTTGGGACT 60.181 43.478 1.37 0.00 40.12 3.85
45 46 4.038642 GCCAAACTCAAAATGTTGGGACTA 59.961 41.667 1.37 0.00 40.12 2.59
46 47 5.452636 GCCAAACTCAAAATGTTGGGACTAA 60.453 40.000 1.37 0.00 40.12 2.24
47 48 6.578023 CCAAACTCAAAATGTTGGGACTAAA 58.422 36.000 1.37 0.00 40.12 1.85
48 49 7.044798 CCAAACTCAAAATGTTGGGACTAAAA 58.955 34.615 1.37 0.00 40.12 1.52
49 50 7.550906 CCAAACTCAAAATGTTGGGACTAAAAA 59.449 33.333 1.37 0.00 40.12 1.94
50 51 9.108284 CAAACTCAAAATGTTGGGACTAAAAAT 57.892 29.630 1.37 0.00 37.41 1.82
51 52 8.661352 AACTCAAAATGTTGGGACTAAAAATG 57.339 30.769 1.37 0.00 37.41 2.32
52 53 7.216494 ACTCAAAATGTTGGGACTAAAAATGG 58.784 34.615 1.37 0.00 37.41 3.16
53 54 7.130681 TCAAAATGTTGGGACTAAAAATGGT 57.869 32.000 0.00 0.00 35.29 3.55
54 55 7.569240 TCAAAATGTTGGGACTAAAAATGGTT 58.431 30.769 0.00 0.00 35.29 3.67
55 56 8.049721 TCAAAATGTTGGGACTAAAAATGGTTT 58.950 29.630 0.00 0.00 35.29 3.27
56 57 7.800155 AAATGTTGGGACTAAAAATGGTTTG 57.200 32.000 0.00 0.00 0.00 2.93
57 58 5.283457 TGTTGGGACTAAAAATGGTTTGG 57.717 39.130 0.00 0.00 0.00 3.28
58 59 4.717280 TGTTGGGACTAAAAATGGTTTGGT 59.283 37.500 0.00 0.00 0.00 3.67
59 60 5.189934 TGTTGGGACTAAAAATGGTTTGGTT 59.810 36.000 0.00 0.00 0.00 3.67
60 61 5.538849 TGGGACTAAAAATGGTTTGGTTC 57.461 39.130 0.00 0.00 0.00 3.62
61 62 4.038162 TGGGACTAAAAATGGTTTGGTTCG 59.962 41.667 0.00 0.00 0.00 3.95
62 63 4.038282 GGGACTAAAAATGGTTTGGTTCGT 59.962 41.667 0.00 0.00 0.00 3.85
63 64 5.217393 GGACTAAAAATGGTTTGGTTCGTC 58.783 41.667 0.00 0.00 0.00 4.20
64 65 5.190992 ACTAAAAATGGTTTGGTTCGTCC 57.809 39.130 0.00 0.00 0.00 4.79
65 66 4.645588 ACTAAAAATGGTTTGGTTCGTCCA 59.354 37.500 0.00 0.00 45.60 4.02
76 77 3.921677 TGGTTCGTCCAAGTAGTTGATC 58.078 45.455 12.04 3.68 44.12 2.92
77 78 3.322541 TGGTTCGTCCAAGTAGTTGATCA 59.677 43.478 12.04 0.00 44.12 2.92
78 79 4.020573 TGGTTCGTCCAAGTAGTTGATCAT 60.021 41.667 12.04 0.00 44.12 2.45
79 80 4.567159 GGTTCGTCCAAGTAGTTGATCATC 59.433 45.833 12.04 0.00 35.46 2.92
80 81 5.168569 GTTCGTCCAAGTAGTTGATCATCA 58.831 41.667 12.04 0.00 35.46 3.07
81 82 4.744570 TCGTCCAAGTAGTTGATCATCAC 58.255 43.478 12.04 0.00 35.46 3.06
82 83 4.219725 TCGTCCAAGTAGTTGATCATCACA 59.780 41.667 12.04 0.00 35.46 3.58
83 84 5.105351 TCGTCCAAGTAGTTGATCATCACAT 60.105 40.000 12.04 0.00 35.46 3.21
84 85 5.233050 CGTCCAAGTAGTTGATCATCACATC 59.767 44.000 12.04 0.00 35.46 3.06
85 86 5.525378 GTCCAAGTAGTTGATCATCACATCC 59.475 44.000 12.04 0.00 35.46 3.51
86 87 4.818546 CCAAGTAGTTGATCATCACATCCC 59.181 45.833 12.04 0.00 35.46 3.85
87 88 5.430886 CAAGTAGTTGATCATCACATCCCA 58.569 41.667 4.11 0.00 35.46 4.37
88 89 5.901413 AGTAGTTGATCATCACATCCCAT 57.099 39.130 6.55 0.00 0.00 4.00
89 90 5.862845 AGTAGTTGATCATCACATCCCATC 58.137 41.667 6.55 0.00 0.00 3.51
90 91 3.736720 AGTTGATCATCACATCCCATCG 58.263 45.455 6.55 0.00 0.00 3.84
91 92 3.135348 AGTTGATCATCACATCCCATCGT 59.865 43.478 6.55 0.00 0.00 3.73
92 93 4.344968 AGTTGATCATCACATCCCATCGTA 59.655 41.667 6.55 0.00 0.00 3.43
93 94 4.257267 TGATCATCACATCCCATCGTAC 57.743 45.455 0.00 0.00 0.00 3.67
94 95 3.897505 TGATCATCACATCCCATCGTACT 59.102 43.478 0.00 0.00 0.00 2.73
95 96 5.076873 TGATCATCACATCCCATCGTACTA 58.923 41.667 0.00 0.00 0.00 1.82
96 97 5.716703 TGATCATCACATCCCATCGTACTAT 59.283 40.000 0.00 0.00 0.00 2.12
97 98 6.889722 TGATCATCACATCCCATCGTACTATA 59.110 38.462 0.00 0.00 0.00 1.31
98 99 7.396055 TGATCATCACATCCCATCGTACTATAA 59.604 37.037 0.00 0.00 0.00 0.98
99 100 7.158099 TCATCACATCCCATCGTACTATAAG 57.842 40.000 0.00 0.00 0.00 1.73
100 101 6.946009 TCATCACATCCCATCGTACTATAAGA 59.054 38.462 0.00 0.00 0.00 2.10
101 102 7.450323 TCATCACATCCCATCGTACTATAAGAA 59.550 37.037 0.00 0.00 0.00 2.52
102 103 7.215719 TCACATCCCATCGTACTATAAGAAG 57.784 40.000 0.00 0.00 0.00 2.85
103 104 5.864474 CACATCCCATCGTACTATAAGAAGC 59.136 44.000 0.00 0.00 0.00 3.86
104 105 5.775701 ACATCCCATCGTACTATAAGAAGCT 59.224 40.000 0.00 0.00 0.00 3.74
105 106 6.946583 ACATCCCATCGTACTATAAGAAGCTA 59.053 38.462 0.00 0.00 0.00 3.32
106 107 6.814506 TCCCATCGTACTATAAGAAGCTAC 57.185 41.667 0.00 0.00 0.00 3.58
107 108 6.540995 TCCCATCGTACTATAAGAAGCTACT 58.459 40.000 0.00 0.00 0.00 2.57
108 109 7.002879 TCCCATCGTACTATAAGAAGCTACTT 58.997 38.462 0.00 0.00 0.00 2.24
109 110 7.174599 TCCCATCGTACTATAAGAAGCTACTTC 59.825 40.741 0.00 0.00 40.45 3.01
110 111 7.306953 CCATCGTACTATAAGAAGCTACTTCC 58.693 42.308 3.77 0.00 40.98 3.46
111 112 7.175293 CCATCGTACTATAAGAAGCTACTTCCT 59.825 40.741 3.77 0.00 40.98 3.36
112 113 7.727331 TCGTACTATAAGAAGCTACTTCCTC 57.273 40.000 3.77 0.00 40.98 3.71
113 114 6.709846 TCGTACTATAAGAAGCTACTTCCTCC 59.290 42.308 3.77 0.00 40.98 4.30
114 115 6.347563 CGTACTATAAGAAGCTACTTCCTCCG 60.348 46.154 3.77 0.00 40.98 4.63
115 116 5.447757 ACTATAAGAAGCTACTTCCTCCGT 58.552 41.667 3.77 0.00 40.98 4.69
116 117 4.922471 ATAAGAAGCTACTTCCTCCGTC 57.078 45.455 3.77 0.00 40.98 4.79
117 118 1.476477 AGAAGCTACTTCCTCCGTCC 58.524 55.000 3.77 0.00 40.98 4.79
118 119 0.460722 GAAGCTACTTCCTCCGTCCC 59.539 60.000 0.00 0.00 34.71 4.46
119 120 0.252103 AAGCTACTTCCTCCGTCCCA 60.252 55.000 0.00 0.00 0.00 4.37
120 121 0.032017 AGCTACTTCCTCCGTCCCAT 60.032 55.000 0.00 0.00 0.00 4.00
121 122 1.217183 AGCTACTTCCTCCGTCCCATA 59.783 52.381 0.00 0.00 0.00 2.74
122 123 2.037144 GCTACTTCCTCCGTCCCATAA 58.963 52.381 0.00 0.00 0.00 1.90
123 124 2.633481 GCTACTTCCTCCGTCCCATAAT 59.367 50.000 0.00 0.00 0.00 1.28
124 125 3.555168 GCTACTTCCTCCGTCCCATAATG 60.555 52.174 0.00 0.00 0.00 1.90
125 126 2.478292 ACTTCCTCCGTCCCATAATGT 58.522 47.619 0.00 0.00 0.00 2.71
126 127 3.649843 ACTTCCTCCGTCCCATAATGTA 58.350 45.455 0.00 0.00 0.00 2.29
127 128 4.035112 ACTTCCTCCGTCCCATAATGTAA 58.965 43.478 0.00 0.00 0.00 2.41
128 129 4.101119 ACTTCCTCCGTCCCATAATGTAAG 59.899 45.833 0.00 0.00 0.00 2.34
129 130 3.918566 TCCTCCGTCCCATAATGTAAGA 58.081 45.455 0.00 0.00 0.00 2.10
130 131 3.640029 TCCTCCGTCCCATAATGTAAGAC 59.360 47.826 0.00 0.00 0.00 3.01
132 133 3.025978 TCCGTCCCATAATGTAAGACGT 58.974 45.455 9.63 0.00 46.62 4.34
133 134 3.448301 TCCGTCCCATAATGTAAGACGTT 59.552 43.478 9.63 0.00 46.62 3.99
134 135 4.081531 TCCGTCCCATAATGTAAGACGTTT 60.082 41.667 9.63 0.00 46.62 3.60
135 136 4.269363 CCGTCCCATAATGTAAGACGTTTC 59.731 45.833 9.63 0.00 46.62 2.78
136 137 4.865925 CGTCCCATAATGTAAGACGTTTCA 59.134 41.667 2.88 0.00 43.89 2.69
137 138 5.220340 CGTCCCATAATGTAAGACGTTTCAC 60.220 44.000 2.88 0.00 43.89 3.18
138 139 5.640357 GTCCCATAATGTAAGACGTTTCACA 59.360 40.000 0.00 0.00 0.00 3.58
139 140 6.315393 GTCCCATAATGTAAGACGTTTCACAT 59.685 38.462 0.00 0.00 33.12 3.21
140 141 6.537301 TCCCATAATGTAAGACGTTTCACATC 59.463 38.462 0.00 0.00 31.40 3.06
141 142 6.238374 CCCATAATGTAAGACGTTTCACATCC 60.238 42.308 0.00 0.00 31.40 3.51
142 143 6.238374 CCATAATGTAAGACGTTTCACATCCC 60.238 42.308 0.00 0.00 31.40 3.85
143 144 3.755112 TGTAAGACGTTTCACATCCCA 57.245 42.857 0.00 0.00 0.00 4.37
144 145 4.280436 TGTAAGACGTTTCACATCCCAT 57.720 40.909 0.00 0.00 0.00 4.00
145 146 4.250464 TGTAAGACGTTTCACATCCCATC 58.750 43.478 0.00 0.00 0.00 3.51
146 147 2.010145 AGACGTTTCACATCCCATCG 57.990 50.000 0.00 0.00 0.00 3.84
147 148 1.275291 AGACGTTTCACATCCCATCGT 59.725 47.619 0.00 0.00 0.00 3.73
148 149 2.494471 AGACGTTTCACATCCCATCGTA 59.506 45.455 0.00 0.00 0.00 3.43
149 150 2.601763 GACGTTTCACATCCCATCGTAC 59.398 50.000 0.00 0.00 0.00 3.67
150 151 2.232941 ACGTTTCACATCCCATCGTACT 59.767 45.455 0.00 0.00 0.00 2.73
151 152 3.444742 ACGTTTCACATCCCATCGTACTA 59.555 43.478 0.00 0.00 0.00 1.82
152 153 4.098960 ACGTTTCACATCCCATCGTACTAT 59.901 41.667 0.00 0.00 0.00 2.12
153 154 5.300034 ACGTTTCACATCCCATCGTACTATA 59.700 40.000 0.00 0.00 0.00 1.31
154 155 6.183360 ACGTTTCACATCCCATCGTACTATAA 60.183 38.462 0.00 0.00 0.00 0.98
155 156 6.362551 CGTTTCACATCCCATCGTACTATAAG 59.637 42.308 0.00 0.00 0.00 1.73
156 157 7.431249 GTTTCACATCCCATCGTACTATAAGA 58.569 38.462 0.00 0.00 0.00 2.10
157 158 7.591421 TTCACATCCCATCGTACTATAAGAA 57.409 36.000 0.00 0.00 0.00 2.52
158 159 7.215719 TCACATCCCATCGTACTATAAGAAG 57.784 40.000 0.00 0.00 0.00 2.85
159 160 5.864474 CACATCCCATCGTACTATAAGAAGC 59.136 44.000 0.00 0.00 0.00 3.86
160 161 5.775701 ACATCCCATCGTACTATAAGAAGCT 59.224 40.000 0.00 0.00 0.00 3.74
161 162 6.946583 ACATCCCATCGTACTATAAGAAGCTA 59.053 38.462 0.00 0.00 0.00 3.32
162 163 6.814506 TCCCATCGTACTATAAGAAGCTAC 57.185 41.667 0.00 0.00 0.00 3.58
163 164 6.540995 TCCCATCGTACTATAAGAAGCTACT 58.459 40.000 0.00 0.00 0.00 2.57
164 165 7.002879 TCCCATCGTACTATAAGAAGCTACTT 58.997 38.462 0.00 0.00 0.00 2.24
165 166 7.174599 TCCCATCGTACTATAAGAAGCTACTTC 59.825 40.741 0.00 0.00 40.45 3.01
166 167 7.306953 CCATCGTACTATAAGAAGCTACTTCC 58.693 42.308 3.77 0.00 40.98 3.46
167 168 7.175293 CCATCGTACTATAAGAAGCTACTTCCT 59.825 40.741 3.77 0.00 40.98 3.36
168 169 7.727331 TCGTACTATAAGAAGCTACTTCCTC 57.273 40.000 3.77 0.00 40.98 3.71
169 170 6.709846 TCGTACTATAAGAAGCTACTTCCTCC 59.290 42.308 3.77 0.00 40.98 4.30
170 171 6.347563 CGTACTATAAGAAGCTACTTCCTCCG 60.348 46.154 3.77 0.00 40.98 4.63
171 172 5.447757 ACTATAAGAAGCTACTTCCTCCGT 58.552 41.667 3.77 0.00 40.98 4.69
172 173 4.922471 ATAAGAAGCTACTTCCTCCGTC 57.078 45.455 3.77 0.00 40.98 4.79
173 174 1.476477 AGAAGCTACTTCCTCCGTCC 58.524 55.000 3.77 0.00 40.98 4.79
174 175 0.460722 GAAGCTACTTCCTCCGTCCC 59.539 60.000 0.00 0.00 34.71 4.46
175 176 0.252103 AAGCTACTTCCTCCGTCCCA 60.252 55.000 0.00 0.00 0.00 4.37
176 177 0.032017 AGCTACTTCCTCCGTCCCAT 60.032 55.000 0.00 0.00 0.00 4.00
177 178 1.217183 AGCTACTTCCTCCGTCCCATA 59.783 52.381 0.00 0.00 0.00 2.74
178 179 2.037144 GCTACTTCCTCCGTCCCATAA 58.963 52.381 0.00 0.00 0.00 1.90
179 180 2.633481 GCTACTTCCTCCGTCCCATAAT 59.367 50.000 0.00 0.00 0.00 1.28
180 181 3.555168 GCTACTTCCTCCGTCCCATAATG 60.555 52.174 0.00 0.00 0.00 1.90
181 182 2.478292 ACTTCCTCCGTCCCATAATGT 58.522 47.619 0.00 0.00 0.00 2.71
182 183 3.649843 ACTTCCTCCGTCCCATAATGTA 58.350 45.455 0.00 0.00 0.00 2.29
183 184 4.035112 ACTTCCTCCGTCCCATAATGTAA 58.965 43.478 0.00 0.00 0.00 2.41
184 185 4.101119 ACTTCCTCCGTCCCATAATGTAAG 59.899 45.833 0.00 0.00 0.00 2.34
185 186 3.918566 TCCTCCGTCCCATAATGTAAGA 58.081 45.455 0.00 0.00 0.00 2.10
186 187 3.640029 TCCTCCGTCCCATAATGTAAGAC 59.360 47.826 0.00 0.00 0.00 3.01
188 189 3.025978 TCCGTCCCATAATGTAAGACGT 58.974 45.455 9.63 0.00 46.62 4.34
189 190 3.448301 TCCGTCCCATAATGTAAGACGTT 59.552 43.478 9.63 0.00 46.62 3.99
190 191 4.081531 TCCGTCCCATAATGTAAGACGTTT 60.082 41.667 9.63 0.00 46.62 3.60
191 192 4.632688 CCGTCCCATAATGTAAGACGTTTT 59.367 41.667 9.63 0.00 46.62 2.43
192 193 5.122711 CCGTCCCATAATGTAAGACGTTTTT 59.877 40.000 9.63 0.00 46.62 1.94
231 232 3.720949 CGTCTTACATTATGGGACGGA 57.279 47.619 20.50 2.30 43.69 4.69
232 233 3.639538 CGTCTTACATTATGGGACGGAG 58.360 50.000 20.50 2.74 43.69 4.63
233 234 3.552273 CGTCTTACATTATGGGACGGAGG 60.552 52.174 20.50 5.87 43.69 4.30
234 235 2.969950 TCTTACATTATGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
235 236 2.779429 TACATTATGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
236 237 1.424638 ACATTATGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
237 238 1.344087 ACATTATGGGACGGAGGGAGT 60.344 52.381 0.00 0.00 0.00 3.85
238 239 2.090943 ACATTATGGGACGGAGGGAGTA 60.091 50.000 0.00 0.00 0.00 2.59
239 240 2.077687 TTATGGGACGGAGGGAGTAC 57.922 55.000 0.00 0.00 0.00 2.73
240 241 1.229131 TATGGGACGGAGGGAGTACT 58.771 55.000 0.00 0.00 0.00 2.73
241 242 1.229131 ATGGGACGGAGGGAGTACTA 58.771 55.000 0.00 0.00 0.00 1.82
242 243 1.002069 TGGGACGGAGGGAGTACTAA 58.998 55.000 0.00 0.00 0.00 2.24
243 244 1.572415 TGGGACGGAGGGAGTACTAAT 59.428 52.381 0.00 0.00 0.00 1.73
244 245 2.023695 TGGGACGGAGGGAGTACTAATT 60.024 50.000 0.00 0.00 0.00 1.40
245 246 3.205056 TGGGACGGAGGGAGTACTAATTA 59.795 47.826 0.00 0.00 0.00 1.40
246 247 4.140853 TGGGACGGAGGGAGTACTAATTAT 60.141 45.833 0.00 0.00 0.00 1.28
247 248 5.074929 TGGGACGGAGGGAGTACTAATTATA 59.925 44.000 0.00 0.00 0.00 0.98
248 249 5.417266 GGGACGGAGGGAGTACTAATTATAC 59.583 48.000 0.00 0.00 0.00 1.47
249 250 5.123027 GGACGGAGGGAGTACTAATTATACG 59.877 48.000 0.00 0.00 0.00 3.06
250 251 5.625150 ACGGAGGGAGTACTAATTATACGT 58.375 41.667 0.00 0.00 0.00 3.57
251 252 6.769512 ACGGAGGGAGTACTAATTATACGTA 58.230 40.000 0.00 0.00 0.00 3.57
252 253 7.398024 ACGGAGGGAGTACTAATTATACGTAT 58.602 38.462 13.54 13.54 0.00 3.06
253 254 7.550906 ACGGAGGGAGTACTAATTATACGTATC 59.449 40.741 12.24 0.00 0.00 2.24
254 255 7.254252 CGGAGGGAGTACTAATTATACGTATCG 60.254 44.444 12.24 0.00 0.00 2.92
255 256 7.766278 GGAGGGAGTACTAATTATACGTATCGA 59.234 40.741 12.24 2.56 0.00 3.59
256 257 8.715191 AGGGAGTACTAATTATACGTATCGAG 57.285 38.462 12.24 7.72 0.00 4.04
257 258 8.317679 AGGGAGTACTAATTATACGTATCGAGT 58.682 37.037 12.24 12.78 0.00 4.18
258 259 8.386606 GGGAGTACTAATTATACGTATCGAGTG 58.613 40.741 12.24 4.03 0.00 3.51
259 260 8.930760 GGAGTACTAATTATACGTATCGAGTGT 58.069 37.037 12.24 9.52 0.00 3.55
348 349 5.355630 TCTTTCTAGACATGGTTCTCTCGAG 59.644 44.000 5.93 5.93 0.00 4.04
357 358 2.093106 GGTTCTCTCGAGTCTAAGCCA 58.907 52.381 13.13 0.00 0.00 4.75
374 375 0.971386 CCAAGGGCATTTGCTTCACT 59.029 50.000 2.12 0.00 41.70 3.41
380 381 1.425412 GCATTTGCTTCACTTGGCTG 58.575 50.000 0.00 0.00 38.21 4.85
381 382 1.269936 GCATTTGCTTCACTTGGCTGT 60.270 47.619 0.00 0.00 38.21 4.40
382 383 2.804212 GCATTTGCTTCACTTGGCTGTT 60.804 45.455 0.00 0.00 38.21 3.16
383 384 2.582728 TTTGCTTCACTTGGCTGTTG 57.417 45.000 0.00 0.00 0.00 3.33
384 385 0.746063 TTGCTTCACTTGGCTGTTGG 59.254 50.000 0.00 0.00 0.00 3.77
391 392 3.547249 CTTGGCTGTTGGCTGCACG 62.547 63.158 0.50 0.00 40.70 5.34
403 404 3.123674 CTGCACGACAGTAGTTCCC 57.876 57.895 0.00 0.00 41.86 3.97
421 437 3.449918 TCCCATCTGACCATACTTGTGA 58.550 45.455 0.00 0.00 0.00 3.58
432 448 4.012374 CCATACTTGTGAAATCTGCAGGT 58.988 43.478 15.13 2.68 0.00 4.00
433 449 4.460382 CCATACTTGTGAAATCTGCAGGTT 59.540 41.667 15.13 10.91 0.00 3.50
441 457 4.022935 GTGAAATCTGCAGGTTGTTGATCA 60.023 41.667 14.22 9.97 0.00 2.92
449 465 0.040425 GGTTGTTGATCACACCACGC 60.040 55.000 11.50 0.00 33.98 5.34
493 509 2.921754 CGTAACCTTTGTGATCGAGGAC 59.078 50.000 10.19 0.00 34.61 3.85
498 514 2.493675 CCTTTGTGATCGAGGACTGAGA 59.506 50.000 0.00 0.00 32.11 3.27
502 518 0.393132 TGATCGAGGACTGAGACGCT 60.393 55.000 0.00 0.00 0.00 5.07
506 522 1.515020 GAGGACTGAGACGCTGCAT 59.485 57.895 0.00 0.00 0.00 3.96
512 528 0.389556 CTGAGACGCTGCATGTCACT 60.390 55.000 18.22 2.24 38.83 3.41
513 529 0.668401 TGAGACGCTGCATGTCACTG 60.668 55.000 18.22 0.00 38.83 3.66
514 530 0.389037 GAGACGCTGCATGTCACTGA 60.389 55.000 18.22 0.00 38.83 3.41
516 532 1.630244 GACGCTGCATGTCACTGACC 61.630 60.000 12.85 0.00 36.37 4.02
517 533 1.668793 CGCTGCATGTCACTGACCA 60.669 57.895 6.72 0.00 0.00 4.02
518 534 1.871772 GCTGCATGTCACTGACCAC 59.128 57.895 6.72 0.00 0.00 4.16
520 536 0.319813 CTGCATGTCACTGACCACGA 60.320 55.000 6.72 0.00 0.00 4.35
521 537 0.599991 TGCATGTCACTGACCACGAC 60.600 55.000 6.72 0.00 0.00 4.34
522 538 1.291877 GCATGTCACTGACCACGACC 61.292 60.000 6.72 0.00 0.00 4.79
523 539 0.318441 CATGTCACTGACCACGACCT 59.682 55.000 6.72 0.00 0.00 3.85
524 540 1.544246 CATGTCACTGACCACGACCTA 59.456 52.381 6.72 0.00 0.00 3.08
525 541 1.919240 TGTCACTGACCACGACCTAT 58.081 50.000 6.72 0.00 0.00 2.57
526 542 1.544246 TGTCACTGACCACGACCTATG 59.456 52.381 6.72 0.00 0.00 2.23
527 543 0.530744 TCACTGACCACGACCTATGC 59.469 55.000 0.00 0.00 0.00 3.14
534 550 2.151202 ACCACGACCTATGCACAAAAG 58.849 47.619 0.00 0.00 0.00 2.27
536 552 1.806542 CACGACCTATGCACAAAAGCT 59.193 47.619 0.00 0.00 34.99 3.74
564 580 4.662961 TGTGCCTCACGGACGCTG 62.663 66.667 0.00 0.00 37.14 5.18
569 585 2.805353 CTCACGGACGCTGTTCGG 60.805 66.667 12.72 3.84 39.09 4.30
570 586 4.351938 TCACGGACGCTGTTCGGG 62.352 66.667 12.72 9.30 39.64 5.14
579 595 4.410400 CTGTTCGGGCCCTGTCCC 62.410 72.222 22.43 3.40 43.02 4.46
580 596 4.974438 TGTTCGGGCCCTGTCCCT 62.974 66.667 22.43 0.00 44.30 4.20
581 597 4.097361 GTTCGGGCCCTGTCCCTC 62.097 72.222 22.43 0.00 44.30 4.30
582 598 4.332543 TTCGGGCCCTGTCCCTCT 62.333 66.667 22.43 0.00 44.30 3.69
585 601 2.040606 GGGCCCTGTCCCTCTGTA 59.959 66.667 17.04 0.00 43.13 2.74
586 602 1.384643 GGGCCCTGTCCCTCTGTAT 60.385 63.158 17.04 0.00 43.13 2.29
587 603 1.700042 GGGCCCTGTCCCTCTGTATG 61.700 65.000 17.04 0.00 43.13 2.39
588 604 0.691078 GGCCCTGTCCCTCTGTATGA 60.691 60.000 0.00 0.00 0.00 2.15
589 605 1.428869 GCCCTGTCCCTCTGTATGAT 58.571 55.000 0.00 0.00 0.00 2.45
590 606 1.071385 GCCCTGTCCCTCTGTATGATG 59.929 57.143 0.00 0.00 0.00 3.07
591 607 1.071385 CCCTGTCCCTCTGTATGATGC 59.929 57.143 0.00 0.00 0.00 3.91
592 608 1.764723 CCTGTCCCTCTGTATGATGCA 59.235 52.381 0.00 0.00 0.00 3.96
593 609 2.484417 CCTGTCCCTCTGTATGATGCAC 60.484 54.545 0.00 0.00 0.00 4.57
594 610 1.136891 TGTCCCTCTGTATGATGCACG 59.863 52.381 0.00 0.00 0.00 5.34
595 611 1.137086 GTCCCTCTGTATGATGCACGT 59.863 52.381 0.00 0.00 0.00 4.49
596 612 1.409064 TCCCTCTGTATGATGCACGTC 59.591 52.381 0.00 0.00 0.00 4.34
597 613 1.539065 CCCTCTGTATGATGCACGTCC 60.539 57.143 0.00 0.00 0.00 4.79
598 614 1.136891 CCTCTGTATGATGCACGTCCA 59.863 52.381 0.00 0.00 0.00 4.02
599 615 2.467838 CTCTGTATGATGCACGTCCAG 58.532 52.381 0.00 0.00 0.00 3.86
600 616 1.824852 TCTGTATGATGCACGTCCAGT 59.175 47.619 0.00 0.00 0.00 4.00
601 617 3.020984 TCTGTATGATGCACGTCCAGTA 58.979 45.455 0.00 0.00 0.00 2.74
602 618 3.636764 TCTGTATGATGCACGTCCAGTAT 59.363 43.478 0.00 0.00 0.00 2.12
603 619 3.716601 TGTATGATGCACGTCCAGTATG 58.283 45.455 0.00 0.00 0.00 2.39
604 620 2.988010 ATGATGCACGTCCAGTATGT 57.012 45.000 0.00 0.00 0.00 2.29
605 621 4.339814 TGTATGATGCACGTCCAGTATGTA 59.660 41.667 0.00 0.00 0.00 2.29
606 622 4.607293 ATGATGCACGTCCAGTATGTAT 57.393 40.909 0.00 0.00 0.00 2.29
607 623 5.722021 ATGATGCACGTCCAGTATGTATA 57.278 39.130 0.00 0.00 0.00 1.47
608 624 5.722021 TGATGCACGTCCAGTATGTATAT 57.278 39.130 0.00 0.00 0.00 0.86
609 625 5.469479 TGATGCACGTCCAGTATGTATATG 58.531 41.667 0.00 0.00 0.00 1.78
610 626 3.649073 TGCACGTCCAGTATGTATATGC 58.351 45.455 0.00 0.00 32.71 3.14
611 627 3.068873 TGCACGTCCAGTATGTATATGCA 59.931 43.478 0.00 0.00 37.59 3.96
612 628 4.055360 GCACGTCCAGTATGTATATGCAA 58.945 43.478 0.00 0.00 32.47 4.08
613 629 4.690748 GCACGTCCAGTATGTATATGCAAT 59.309 41.667 0.00 0.00 32.47 3.56
614 630 5.867174 GCACGTCCAGTATGTATATGCAATA 59.133 40.000 0.00 0.00 32.47 1.90
615 631 6.367695 GCACGTCCAGTATGTATATGCAATAA 59.632 38.462 0.00 0.00 32.47 1.40
616 632 7.064609 GCACGTCCAGTATGTATATGCAATAAT 59.935 37.037 0.00 0.00 32.47 1.28
617 633 8.382875 CACGTCCAGTATGTATATGCAATAATG 58.617 37.037 0.00 0.00 29.06 1.90
618 634 8.094548 ACGTCCAGTATGTATATGCAATAATGT 58.905 33.333 0.00 0.00 29.06 2.71
619 635 9.581099 CGTCCAGTATGTATATGCAATAATGTA 57.419 33.333 0.00 0.00 29.06 2.29
640 656 1.452025 CTGCAAGTCACGTGTACTTCG 59.548 52.381 22.30 18.91 34.99 3.79
641 657 1.202325 TGCAAGTCACGTGTACTTCGT 60.202 47.619 22.30 9.97 42.33 3.85
642 658 2.033174 TGCAAGTCACGTGTACTTCGTA 59.967 45.455 22.30 16.51 39.55 3.43
643 659 2.403037 GCAAGTCACGTGTACTTCGTAC 59.597 50.000 22.30 10.09 39.55 3.67
644 660 2.584166 AGTCACGTGTACTTCGTACG 57.416 50.000 16.51 9.53 41.41 3.67
645 661 0.970606 GTCACGTGTACTTCGTACGC 59.029 55.000 16.51 7.46 43.48 4.42
646 662 0.867746 TCACGTGTACTTCGTACGCT 59.132 50.000 16.51 0.00 44.36 5.07
647 663 0.972717 CACGTGTACTTCGTACGCTG 59.027 55.000 11.24 8.07 44.36 5.18
648 664 0.727122 ACGTGTACTTCGTACGCTGC 60.727 55.000 11.24 0.00 44.36 5.25
649 665 0.453950 CGTGTACTTCGTACGCTGCT 60.454 55.000 11.24 0.00 44.36 4.24
650 666 1.257539 GTGTACTTCGTACGCTGCTC 58.742 55.000 11.24 1.69 43.54 4.26
651 667 0.169672 TGTACTTCGTACGCTGCTCC 59.830 55.000 11.24 0.00 41.41 4.70
652 668 0.450983 GTACTTCGTACGCTGCTCCT 59.549 55.000 11.24 0.00 29.20 3.69
653 669 1.135460 GTACTTCGTACGCTGCTCCTT 60.135 52.381 11.24 0.00 29.20 3.36
654 670 0.317479 ACTTCGTACGCTGCTCCTTT 59.683 50.000 11.24 0.00 0.00 3.11
655 671 1.270147 ACTTCGTACGCTGCTCCTTTT 60.270 47.619 11.24 0.00 0.00 2.27
656 672 1.798813 CTTCGTACGCTGCTCCTTTTT 59.201 47.619 11.24 0.00 0.00 1.94
657 673 1.144969 TCGTACGCTGCTCCTTTTTG 58.855 50.000 11.24 0.00 0.00 2.44
658 674 0.165944 CGTACGCTGCTCCTTTTTGG 59.834 55.000 0.52 0.00 37.10 3.28
659 675 0.109735 GTACGCTGCTCCTTTTTGGC 60.110 55.000 0.00 0.00 35.26 4.52
660 676 0.250727 TACGCTGCTCCTTTTTGGCT 60.251 50.000 0.00 0.00 35.26 4.75
661 677 1.211190 CGCTGCTCCTTTTTGGCTC 59.789 57.895 0.00 0.00 35.26 4.70
662 678 1.588597 GCTGCTCCTTTTTGGCTCC 59.411 57.895 0.00 0.00 35.26 4.70
663 679 0.897401 GCTGCTCCTTTTTGGCTCCT 60.897 55.000 0.00 0.00 35.26 3.69
664 680 1.625511 CTGCTCCTTTTTGGCTCCTT 58.374 50.000 0.00 0.00 35.26 3.36
665 681 1.271656 CTGCTCCTTTTTGGCTCCTTG 59.728 52.381 0.00 0.00 35.26 3.61
666 682 1.133513 TGCTCCTTTTTGGCTCCTTGA 60.134 47.619 0.00 0.00 35.26 3.02
667 683 1.543358 GCTCCTTTTTGGCTCCTTGAG 59.457 52.381 0.00 0.00 35.26 3.02
678 694 3.831715 GCTCCTTGAGCGTTTATTTGT 57.168 42.857 0.00 0.00 45.85 2.83
679 695 3.492313 GCTCCTTGAGCGTTTATTTGTG 58.508 45.455 0.00 0.00 45.85 3.33
680 696 3.058224 GCTCCTTGAGCGTTTATTTGTGT 60.058 43.478 0.00 0.00 45.85 3.72
681 697 4.712763 CTCCTTGAGCGTTTATTTGTGTC 58.287 43.478 0.00 0.00 0.00 3.67
682 698 3.185594 TCCTTGAGCGTTTATTTGTGTCG 59.814 43.478 0.00 0.00 0.00 4.35
683 699 3.059188 CCTTGAGCGTTTATTTGTGTCGT 60.059 43.478 0.00 0.00 0.00 4.34
684 700 4.523813 CTTGAGCGTTTATTTGTGTCGTT 58.476 39.130 0.00 0.00 0.00 3.85
685 701 3.867665 TGAGCGTTTATTTGTGTCGTTG 58.132 40.909 0.00 0.00 0.00 4.10
686 702 3.310227 TGAGCGTTTATTTGTGTCGTTGT 59.690 39.130 0.00 0.00 0.00 3.32
687 703 4.201832 TGAGCGTTTATTTGTGTCGTTGTT 60.202 37.500 0.00 0.00 0.00 2.83
688 704 4.664188 AGCGTTTATTTGTGTCGTTGTTT 58.336 34.783 0.00 0.00 0.00 2.83
689 705 4.731480 AGCGTTTATTTGTGTCGTTGTTTC 59.269 37.500 0.00 0.00 0.00 2.78
690 706 4.731480 GCGTTTATTTGTGTCGTTGTTTCT 59.269 37.500 0.00 0.00 0.00 2.52
691 707 5.330498 GCGTTTATTTGTGTCGTTGTTTCTG 60.330 40.000 0.00 0.00 0.00 3.02
692 708 5.330498 CGTTTATTTGTGTCGTTGTTTCTGC 60.330 40.000 0.00 0.00 0.00 4.26
693 709 5.493133 TTATTTGTGTCGTTGTTTCTGCT 57.507 34.783 0.00 0.00 0.00 4.24
694 710 2.823196 TTGTGTCGTTGTTTCTGCTG 57.177 45.000 0.00 0.00 0.00 4.41
695 711 2.017138 TGTGTCGTTGTTTCTGCTGA 57.983 45.000 0.00 0.00 0.00 4.26
696 712 1.663643 TGTGTCGTTGTTTCTGCTGAC 59.336 47.619 0.00 0.00 0.00 3.51
697 713 1.663643 GTGTCGTTGTTTCTGCTGACA 59.336 47.619 0.00 0.00 34.27 3.58
698 714 1.663643 TGTCGTTGTTTCTGCTGACAC 59.336 47.619 3.15 3.15 31.93 3.67
699 715 1.663643 GTCGTTGTTTCTGCTGACACA 59.336 47.619 8.34 8.34 31.81 3.72
700 716 1.663643 TCGTTGTTTCTGCTGACACAC 59.336 47.619 11.59 7.08 33.23 3.82
701 717 1.396648 CGTTGTTTCTGCTGACACACA 59.603 47.619 11.59 4.12 33.23 3.72
702 718 2.032054 CGTTGTTTCTGCTGACACACAT 59.968 45.455 11.59 0.00 33.23 3.21
703 719 3.621794 GTTGTTTCTGCTGACACACATC 58.378 45.455 11.59 3.48 33.23 3.06
704 720 2.916640 TGTTTCTGCTGACACACATCA 58.083 42.857 8.34 0.00 29.03 3.07
705 721 3.479489 TGTTTCTGCTGACACACATCAT 58.521 40.909 8.34 0.00 29.03 2.45
706 722 4.640364 TGTTTCTGCTGACACACATCATA 58.360 39.130 8.34 0.00 29.03 2.15
707 723 5.062528 TGTTTCTGCTGACACACATCATAA 58.937 37.500 8.34 0.00 29.03 1.90
708 724 5.530543 TGTTTCTGCTGACACACATCATAAA 59.469 36.000 8.34 0.00 29.03 1.40
709 725 6.207221 TGTTTCTGCTGACACACATCATAAAT 59.793 34.615 8.34 0.00 29.03 1.40
710 726 6.822667 TTCTGCTGACACACATCATAAATT 57.177 33.333 0.00 0.00 0.00 1.82
711 727 6.426980 TCTGCTGACACACATCATAAATTC 57.573 37.500 0.00 0.00 0.00 2.17
712 728 6.175471 TCTGCTGACACACATCATAAATTCT 58.825 36.000 0.00 0.00 0.00 2.40
713 729 6.656270 TCTGCTGACACACATCATAAATTCTT 59.344 34.615 0.00 0.00 0.00 2.52
714 730 7.823799 TCTGCTGACACACATCATAAATTCTTA 59.176 33.333 0.00 0.00 0.00 2.10
715 731 7.977904 TGCTGACACACATCATAAATTCTTAG 58.022 34.615 0.00 0.00 0.00 2.18
716 732 7.607607 TGCTGACACACATCATAAATTCTTAGT 59.392 33.333 0.00 0.00 0.00 2.24
717 733 9.098355 GCTGACACACATCATAAATTCTTAGTA 57.902 33.333 0.00 0.00 0.00 1.82
719 735 9.378551 TGACACACATCATAAATTCTTAGTACC 57.621 33.333 0.00 0.00 0.00 3.34
720 736 9.378551 GACACACATCATAAATTCTTAGTACCA 57.621 33.333 0.00 0.00 0.00 3.25
721 737 9.383519 ACACACATCATAAATTCTTAGTACCAG 57.616 33.333 0.00 0.00 0.00 4.00
722 738 8.830580 CACACATCATAAATTCTTAGTACCAGG 58.169 37.037 0.00 0.00 0.00 4.45
723 739 7.499232 ACACATCATAAATTCTTAGTACCAGGC 59.501 37.037 0.00 0.00 0.00 4.85
724 740 6.998673 ACATCATAAATTCTTAGTACCAGGCC 59.001 38.462 0.00 0.00 0.00 5.19
725 741 6.569127 TCATAAATTCTTAGTACCAGGCCA 57.431 37.500 5.01 0.00 0.00 5.36
726 742 6.964464 TCATAAATTCTTAGTACCAGGCCAA 58.036 36.000 5.01 0.00 0.00 4.52
727 743 7.054124 TCATAAATTCTTAGTACCAGGCCAAG 58.946 38.462 5.01 0.00 0.00 3.61
1001 1029 2.484264 GCGCTCCCGATTAATTAGCAAT 59.516 45.455 0.00 0.00 36.29 3.56
1154 1185 3.775654 CCCCCACTCGCTCCACTC 61.776 72.222 0.00 0.00 0.00 3.51
1155 1186 2.681778 CCCCACTCGCTCCACTCT 60.682 66.667 0.00 0.00 0.00 3.24
1156 1187 2.716017 CCCCACTCGCTCCACTCTC 61.716 68.421 0.00 0.00 0.00 3.20
1157 1188 2.716017 CCCACTCGCTCCACTCTCC 61.716 68.421 0.00 0.00 0.00 3.71
1158 1189 1.680651 CCACTCGCTCCACTCTCCT 60.681 63.158 0.00 0.00 0.00 3.69
1159 1190 1.662438 CCACTCGCTCCACTCTCCTC 61.662 65.000 0.00 0.00 0.00 3.71
1160 1191 0.962855 CACTCGCTCCACTCTCCTCA 60.963 60.000 0.00 0.00 0.00 3.86
1161 1192 0.963355 ACTCGCTCCACTCTCCTCAC 60.963 60.000 0.00 0.00 0.00 3.51
1239 1270 4.292178 GAGCTCCAGCCCCGATCG 62.292 72.222 8.51 8.51 43.38 3.69
1266 1309 0.987294 CCATGGTGAGGTCCAACTCT 59.013 55.000 2.57 0.00 41.09 3.24
1330 1373 0.674895 CCTTCCGCTTCCACTTCCAG 60.675 60.000 0.00 0.00 0.00 3.86
1335 1378 0.250295 CGCTTCCACTTCCAGTTCCA 60.250 55.000 0.00 0.00 0.00 3.53
1341 1384 1.073763 CCACTTCCAGTTCCATCCACA 59.926 52.381 0.00 0.00 0.00 4.17
1348 1391 0.693049 AGTTCCATCCACACCTCCAC 59.307 55.000 0.00 0.00 0.00 4.02
1349 1392 0.693049 GTTCCATCCACACCTCCACT 59.307 55.000 0.00 0.00 0.00 4.00
1350 1393 1.073923 GTTCCATCCACACCTCCACTT 59.926 52.381 0.00 0.00 0.00 3.16
1351 1394 1.444933 TCCATCCACACCTCCACTTT 58.555 50.000 0.00 0.00 0.00 2.66
1409 1452 1.201343 GCGGTTCATAGCTCGACTTC 58.799 55.000 0.00 0.00 0.00 3.01
1410 1453 1.202313 GCGGTTCATAGCTCGACTTCT 60.202 52.381 0.00 0.00 0.00 2.85
1415 1458 5.172205 GGTTCATAGCTCGACTTCTTTTCT 58.828 41.667 0.00 0.00 0.00 2.52
1416 1459 5.062809 GGTTCATAGCTCGACTTCTTTTCTG 59.937 44.000 0.00 0.00 0.00 3.02
1519 1562 4.502604 GGCTCCAAGTACGGCAAGAATATA 60.503 45.833 0.00 0.00 0.00 0.86
1696 1739 2.532256 CGCCTACGAGGTCGACGAT 61.532 63.158 9.92 0.00 43.93 3.73
1861 1910 2.123812 ACGGACGATCCTCCTCCC 60.124 66.667 8.83 0.00 33.30 4.30
1937 1997 6.633500 TTTGTTCCTTTGTTCATAGTGGAG 57.367 37.500 0.00 0.00 0.00 3.86
1949 2010 2.509931 TAGTGGAGGACGACCCCAGG 62.510 65.000 12.79 0.00 37.25 4.45
1977 2038 6.398095 TGATGTGTGTAAGTTGATCCTACTG 58.602 40.000 0.00 0.00 0.00 2.74
2071 2132 2.185004 TTCTAGCTTTCTGTGTGGGC 57.815 50.000 0.00 0.00 0.00 5.36
2120 2182 7.156876 TGGATTCTGTTTTGATTATCCACAC 57.843 36.000 0.00 0.00 37.28 3.82
2163 2225 5.880332 GTCACCACTAATTTCATAAGCTGGA 59.120 40.000 0.00 0.00 0.00 3.86
2191 2253 6.832384 ACAAGATAAATTCATGTGATGGAGCT 59.168 34.615 0.00 0.00 35.07 4.09
2193 2255 7.893124 AGATAAATTCATGTGATGGAGCTTT 57.107 32.000 0.00 0.00 0.00 3.51
2194 2256 7.713750 AGATAAATTCATGTGATGGAGCTTTG 58.286 34.615 0.00 0.00 0.00 2.77
2195 2257 5.733620 AAATTCATGTGATGGAGCTTTGT 57.266 34.783 0.00 0.00 0.00 2.83
2196 2258 5.733620 AATTCATGTGATGGAGCTTTGTT 57.266 34.783 0.00 0.00 0.00 2.83
2197 2259 6.839124 AATTCATGTGATGGAGCTTTGTTA 57.161 33.333 0.00 0.00 0.00 2.41
2253 2315 1.347707 AGTCAACTCGCTGGGAATTCA 59.652 47.619 7.93 0.00 0.00 2.57
2271 2333 4.771590 TTCAGAATTGGAGCACAACATC 57.228 40.909 0.00 0.00 42.94 3.06
2298 2360 0.324943 GCAGTCAAGGCTCCAGGTAA 59.675 55.000 0.00 0.00 0.00 2.85
2299 2361 1.677217 GCAGTCAAGGCTCCAGGTAAG 60.677 57.143 0.00 0.00 0.00 2.34
2300 2362 1.625818 CAGTCAAGGCTCCAGGTAAGT 59.374 52.381 0.00 0.00 0.00 2.24
2301 2363 1.903183 AGTCAAGGCTCCAGGTAAGTC 59.097 52.381 0.00 0.00 0.00 3.01
2302 2364 1.903183 GTCAAGGCTCCAGGTAAGTCT 59.097 52.381 0.00 0.00 0.00 3.24
2303 2365 3.097614 GTCAAGGCTCCAGGTAAGTCTA 58.902 50.000 0.00 0.00 0.00 2.59
2304 2366 3.707102 GTCAAGGCTCCAGGTAAGTCTAT 59.293 47.826 0.00 0.00 0.00 1.98
2305 2367 4.162509 GTCAAGGCTCCAGGTAAGTCTATT 59.837 45.833 0.00 0.00 0.00 1.73
2306 2368 4.406003 TCAAGGCTCCAGGTAAGTCTATTC 59.594 45.833 0.00 0.00 0.00 1.75
2307 2369 2.959707 AGGCTCCAGGTAAGTCTATTCG 59.040 50.000 0.00 0.00 0.00 3.34
2308 2370 2.546162 GGCTCCAGGTAAGTCTATTCGC 60.546 54.545 0.00 0.00 0.00 4.70
2309 2371 2.100916 GCTCCAGGTAAGTCTATTCGCA 59.899 50.000 0.00 0.00 0.00 5.10
2310 2372 3.430374 GCTCCAGGTAAGTCTATTCGCAA 60.430 47.826 0.00 0.00 0.00 4.85
2311 2373 4.755411 CTCCAGGTAAGTCTATTCGCAAA 58.245 43.478 0.00 0.00 0.00 3.68
2312 2374 5.155278 TCCAGGTAAGTCTATTCGCAAAA 57.845 39.130 0.00 0.00 0.00 2.44
2313 2375 5.553123 TCCAGGTAAGTCTATTCGCAAAAA 58.447 37.500 0.00 0.00 0.00 1.94
2369 2431 3.968265 ACCCCAGTTAATCAGTTGGATG 58.032 45.455 0.00 0.00 36.02 3.51
2371 2433 4.230502 ACCCCAGTTAATCAGTTGGATGAT 59.769 41.667 0.00 0.00 41.72 2.45
2373 2435 5.300286 CCCCAGTTAATCAGTTGGATGATTC 59.700 44.000 5.29 0.00 44.68 2.52
2428 2490 8.666573 CAAGAATTTGTATATGCAAAAATGCCA 58.333 29.630 20.62 0.00 41.03 4.92
2849 2996 7.303998 CAAAACAGAGAGGAGAATTTGATGTC 58.696 38.462 0.00 0.00 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.069158 CCTAAATGGTACCCGATCGAGTT 59.931 47.826 18.66 3.30 0.00 3.01
1 2 2.626743 CCTAAATGGTACCCGATCGAGT 59.373 50.000 18.66 12.95 0.00 4.18
2 3 2.609737 GCCTAAATGGTACCCGATCGAG 60.610 54.545 18.66 5.68 38.35 4.04
3 4 1.342174 GCCTAAATGGTACCCGATCGA 59.658 52.381 18.66 0.00 38.35 3.59
4 5 1.607251 GGCCTAAATGGTACCCGATCG 60.607 57.143 10.07 8.51 38.35 3.69
5 6 1.418637 TGGCCTAAATGGTACCCGATC 59.581 52.381 10.07 0.00 38.35 3.69
6 7 1.513858 TGGCCTAAATGGTACCCGAT 58.486 50.000 10.07 0.00 38.35 4.18
7 8 1.287217 TTGGCCTAAATGGTACCCGA 58.713 50.000 10.07 0.00 38.35 5.14
8 9 1.746787 GTTTGGCCTAAATGGTACCCG 59.253 52.381 10.07 0.00 38.35 5.28
9 10 3.021695 GAGTTTGGCCTAAATGGTACCC 58.978 50.000 10.07 0.00 38.35 3.69
10 11 3.692690 TGAGTTTGGCCTAAATGGTACC 58.307 45.455 4.21 4.43 38.35 3.34
11 12 5.715434 TTTGAGTTTGGCCTAAATGGTAC 57.285 39.130 4.21 0.00 38.35 3.34
12 13 6.268847 ACATTTTGAGTTTGGCCTAAATGGTA 59.731 34.615 4.21 0.00 38.70 3.25
13 14 5.071653 ACATTTTGAGTTTGGCCTAAATGGT 59.928 36.000 4.21 0.00 38.70 3.55
14 15 5.550290 ACATTTTGAGTTTGGCCTAAATGG 58.450 37.500 4.21 0.00 38.70 3.16
15 16 6.073112 CCAACATTTTGAGTTTGGCCTAAATG 60.073 38.462 4.21 5.15 39.55 2.32
16 17 5.997129 CCAACATTTTGAGTTTGGCCTAAAT 59.003 36.000 3.32 0.41 34.24 1.40
17 18 5.363939 CCAACATTTTGAGTTTGGCCTAAA 58.636 37.500 3.32 0.00 34.24 1.85
18 19 4.202305 CCCAACATTTTGAGTTTGGCCTAA 60.202 41.667 3.32 0.00 34.24 2.69
19 20 3.323403 CCCAACATTTTGAGTTTGGCCTA 59.677 43.478 3.32 0.00 34.24 3.93
20 21 2.104622 CCCAACATTTTGAGTTTGGCCT 59.895 45.455 3.32 0.00 34.24 5.19
21 22 2.103941 TCCCAACATTTTGAGTTTGGCC 59.896 45.455 0.00 0.00 33.19 5.36
22 23 3.130633 GTCCCAACATTTTGAGTTTGGC 58.869 45.455 0.00 0.00 33.19 4.52
23 24 4.670896 AGTCCCAACATTTTGAGTTTGG 57.329 40.909 0.00 0.00 34.24 3.28
24 25 8.485976 TTTTTAGTCCCAACATTTTGAGTTTG 57.514 30.769 0.00 0.00 34.24 2.93
25 26 9.108284 CATTTTTAGTCCCAACATTTTGAGTTT 57.892 29.630 0.00 0.00 34.24 2.66
26 27 7.714813 CCATTTTTAGTCCCAACATTTTGAGTT 59.285 33.333 0.00 0.00 34.24 3.01
27 28 7.147567 ACCATTTTTAGTCCCAACATTTTGAGT 60.148 33.333 0.00 0.00 34.24 3.41
28 29 7.216494 ACCATTTTTAGTCCCAACATTTTGAG 58.784 34.615 0.00 0.00 34.24 3.02
29 30 7.130681 ACCATTTTTAGTCCCAACATTTTGA 57.869 32.000 0.00 0.00 34.24 2.69
30 31 7.800155 AACCATTTTTAGTCCCAACATTTTG 57.200 32.000 0.00 0.00 0.00 2.44
31 32 7.284261 CCAAACCATTTTTAGTCCCAACATTTT 59.716 33.333 0.00 0.00 0.00 1.82
32 33 6.770303 CCAAACCATTTTTAGTCCCAACATTT 59.230 34.615 0.00 0.00 0.00 2.32
33 34 6.126623 ACCAAACCATTTTTAGTCCCAACATT 60.127 34.615 0.00 0.00 0.00 2.71
34 35 5.368230 ACCAAACCATTTTTAGTCCCAACAT 59.632 36.000 0.00 0.00 0.00 2.71
35 36 4.717280 ACCAAACCATTTTTAGTCCCAACA 59.283 37.500 0.00 0.00 0.00 3.33
36 37 5.284861 ACCAAACCATTTTTAGTCCCAAC 57.715 39.130 0.00 0.00 0.00 3.77
37 38 5.452077 CGAACCAAACCATTTTTAGTCCCAA 60.452 40.000 0.00 0.00 0.00 4.12
38 39 4.038162 CGAACCAAACCATTTTTAGTCCCA 59.962 41.667 0.00 0.00 0.00 4.37
39 40 4.038282 ACGAACCAAACCATTTTTAGTCCC 59.962 41.667 0.00 0.00 0.00 4.46
40 41 5.190992 ACGAACCAAACCATTTTTAGTCC 57.809 39.130 0.00 0.00 0.00 3.85
41 42 5.217393 GGACGAACCAAACCATTTTTAGTC 58.783 41.667 0.00 0.00 38.79 2.59
42 43 4.645588 TGGACGAACCAAACCATTTTTAGT 59.354 37.500 3.90 0.00 46.75 2.24
43 44 5.189659 TGGACGAACCAAACCATTTTTAG 57.810 39.130 3.90 0.00 46.75 1.85
56 57 3.921677 TGATCAACTACTTGGACGAACC 58.078 45.455 0.00 0.00 39.54 3.62
57 58 5.062308 GTGATGATCAACTACTTGGACGAAC 59.938 44.000 0.00 0.00 0.00 3.95
58 59 5.168569 GTGATGATCAACTACTTGGACGAA 58.831 41.667 0.00 0.00 0.00 3.85
59 60 4.219725 TGTGATGATCAACTACTTGGACGA 59.780 41.667 0.00 0.00 0.00 4.20
60 61 4.494484 TGTGATGATCAACTACTTGGACG 58.506 43.478 0.00 0.00 0.00 4.79
61 62 5.525378 GGATGTGATGATCAACTACTTGGAC 59.475 44.000 0.00 0.00 0.00 4.02
62 63 5.396772 GGGATGTGATGATCAACTACTTGGA 60.397 44.000 0.00 0.00 0.00 3.53
63 64 4.818546 GGGATGTGATGATCAACTACTTGG 59.181 45.833 0.00 0.00 0.00 3.61
64 65 5.430886 TGGGATGTGATGATCAACTACTTG 58.569 41.667 0.00 0.00 0.00 3.16
65 66 5.698741 TGGGATGTGATGATCAACTACTT 57.301 39.130 0.00 0.00 0.00 2.24
66 67 5.510349 CGATGGGATGTGATGATCAACTACT 60.510 44.000 0.00 0.00 0.00 2.57
67 68 4.687948 CGATGGGATGTGATGATCAACTAC 59.312 45.833 0.00 0.00 0.00 2.73
68 69 4.344968 ACGATGGGATGTGATGATCAACTA 59.655 41.667 0.00 0.00 0.00 2.24
69 70 3.135348 ACGATGGGATGTGATGATCAACT 59.865 43.478 0.00 0.00 0.00 3.16
70 71 3.470709 ACGATGGGATGTGATGATCAAC 58.529 45.455 0.00 0.00 0.00 3.18
71 72 3.843893 ACGATGGGATGTGATGATCAA 57.156 42.857 0.00 0.00 0.00 2.57
72 73 3.897505 AGTACGATGGGATGTGATGATCA 59.102 43.478 0.00 0.00 0.00 2.92
73 74 4.527509 AGTACGATGGGATGTGATGATC 57.472 45.455 0.00 0.00 0.00 2.92
74 75 7.615757 TCTTATAGTACGATGGGATGTGATGAT 59.384 37.037 0.00 0.00 0.00 2.45
75 76 6.946009 TCTTATAGTACGATGGGATGTGATGA 59.054 38.462 0.00 0.00 0.00 2.92
76 77 7.158099 TCTTATAGTACGATGGGATGTGATG 57.842 40.000 0.00 0.00 0.00 3.07
77 78 7.577807 GCTTCTTATAGTACGATGGGATGTGAT 60.578 40.741 0.00 0.00 0.00 3.06
78 79 6.294564 GCTTCTTATAGTACGATGGGATGTGA 60.295 42.308 0.00 0.00 0.00 3.58
79 80 5.864474 GCTTCTTATAGTACGATGGGATGTG 59.136 44.000 0.00 0.00 0.00 3.21
80 81 5.775701 AGCTTCTTATAGTACGATGGGATGT 59.224 40.000 0.00 0.00 0.00 3.06
81 82 6.274157 AGCTTCTTATAGTACGATGGGATG 57.726 41.667 0.00 1.53 0.00 3.51
82 83 7.176490 AGTAGCTTCTTATAGTACGATGGGAT 58.824 38.462 0.00 0.00 0.00 3.85
83 84 6.540995 AGTAGCTTCTTATAGTACGATGGGA 58.459 40.000 0.00 0.00 0.00 4.37
84 85 6.821031 AGTAGCTTCTTATAGTACGATGGG 57.179 41.667 0.00 0.00 0.00 4.00
85 86 7.175293 AGGAAGTAGCTTCTTATAGTACGATGG 59.825 40.741 5.49 0.00 40.07 3.51
86 87 8.101654 AGGAAGTAGCTTCTTATAGTACGATG 57.898 38.462 5.49 0.00 40.07 3.84
87 88 7.391275 GGAGGAAGTAGCTTCTTATAGTACGAT 59.609 40.741 5.49 0.00 40.07 3.73
88 89 6.709846 GGAGGAAGTAGCTTCTTATAGTACGA 59.290 42.308 5.49 0.00 40.07 3.43
89 90 6.347563 CGGAGGAAGTAGCTTCTTATAGTACG 60.348 46.154 5.49 3.39 40.07 3.67
90 91 6.486320 ACGGAGGAAGTAGCTTCTTATAGTAC 59.514 42.308 5.49 0.00 40.07 2.73
91 92 6.599445 ACGGAGGAAGTAGCTTCTTATAGTA 58.401 40.000 5.49 0.00 40.07 1.82
92 93 5.447757 ACGGAGGAAGTAGCTTCTTATAGT 58.552 41.667 5.49 0.42 40.07 2.12
93 94 5.048573 GGACGGAGGAAGTAGCTTCTTATAG 60.049 48.000 5.49 0.00 40.07 1.31
94 95 4.826183 GGACGGAGGAAGTAGCTTCTTATA 59.174 45.833 5.49 0.00 40.07 0.98
95 96 3.637694 GGACGGAGGAAGTAGCTTCTTAT 59.362 47.826 5.49 0.00 40.07 1.73
96 97 3.022406 GGACGGAGGAAGTAGCTTCTTA 58.978 50.000 5.49 0.00 40.07 2.10
97 98 1.826096 GGACGGAGGAAGTAGCTTCTT 59.174 52.381 5.14 5.14 40.07 2.52
98 99 1.476477 GGACGGAGGAAGTAGCTTCT 58.524 55.000 8.52 0.00 40.07 2.85
99 100 0.460722 GGGACGGAGGAAGTAGCTTC 59.539 60.000 0.00 0.58 39.52 3.86
100 101 0.252103 TGGGACGGAGGAAGTAGCTT 60.252 55.000 0.00 0.00 0.00 3.74
101 102 0.032017 ATGGGACGGAGGAAGTAGCT 60.032 55.000 0.00 0.00 0.00 3.32
102 103 1.700955 TATGGGACGGAGGAAGTAGC 58.299 55.000 0.00 0.00 0.00 3.58
103 104 3.641906 ACATTATGGGACGGAGGAAGTAG 59.358 47.826 0.00 0.00 0.00 2.57
104 105 3.649843 ACATTATGGGACGGAGGAAGTA 58.350 45.455 0.00 0.00 0.00 2.24
105 106 2.478292 ACATTATGGGACGGAGGAAGT 58.522 47.619 0.00 0.00 0.00 3.01
106 107 4.344102 TCTTACATTATGGGACGGAGGAAG 59.656 45.833 0.00 0.00 0.00 3.46
107 108 4.100498 GTCTTACATTATGGGACGGAGGAA 59.900 45.833 0.00 0.00 0.00 3.36
108 109 3.640029 GTCTTACATTATGGGACGGAGGA 59.360 47.826 0.00 0.00 0.00 3.71
109 110 3.552273 CGTCTTACATTATGGGACGGAGG 60.552 52.174 20.50 5.87 43.69 4.30
110 111 3.639538 CGTCTTACATTATGGGACGGAG 58.360 50.000 20.50 2.74 43.69 4.63
111 112 3.720949 CGTCTTACATTATGGGACGGA 57.279 47.619 20.50 2.30 43.69 4.69
114 115 5.640357 TGTGAAACGTCTTACATTATGGGAC 59.360 40.000 0.00 1.75 42.39 4.46
115 116 5.795972 TGTGAAACGTCTTACATTATGGGA 58.204 37.500 0.00 0.00 42.39 4.37
116 117 6.677781 ATGTGAAACGTCTTACATTATGGG 57.322 37.500 0.00 0.00 42.39 4.00
129 130 2.232941 AGTACGATGGGATGTGAAACGT 59.767 45.455 0.00 0.00 42.39 3.99
130 131 2.888594 AGTACGATGGGATGTGAAACG 58.111 47.619 0.00 0.00 42.39 3.60
131 132 7.431249 TCTTATAGTACGATGGGATGTGAAAC 58.569 38.462 0.00 0.00 37.35 2.78
132 133 7.591421 TCTTATAGTACGATGGGATGTGAAA 57.409 36.000 0.00 0.00 0.00 2.69
133 134 7.591421 TTCTTATAGTACGATGGGATGTGAA 57.409 36.000 0.00 0.00 0.00 3.18
134 135 6.294564 GCTTCTTATAGTACGATGGGATGTGA 60.295 42.308 0.00 0.00 0.00 3.58
135 136 5.864474 GCTTCTTATAGTACGATGGGATGTG 59.136 44.000 0.00 0.00 0.00 3.21
136 137 5.775701 AGCTTCTTATAGTACGATGGGATGT 59.224 40.000 0.00 0.00 0.00 3.06
137 138 6.274157 AGCTTCTTATAGTACGATGGGATG 57.726 41.667 0.00 1.53 0.00 3.51
138 139 7.176490 AGTAGCTTCTTATAGTACGATGGGAT 58.824 38.462 0.00 0.00 0.00 3.85
139 140 6.540995 AGTAGCTTCTTATAGTACGATGGGA 58.459 40.000 0.00 0.00 0.00 4.37
140 141 6.821031 AGTAGCTTCTTATAGTACGATGGG 57.179 41.667 0.00 0.00 0.00 4.00
141 142 7.175293 AGGAAGTAGCTTCTTATAGTACGATGG 59.825 40.741 5.49 0.00 40.07 3.51
142 143 8.101654 AGGAAGTAGCTTCTTATAGTACGATG 57.898 38.462 5.49 0.00 40.07 3.84
143 144 7.391275 GGAGGAAGTAGCTTCTTATAGTACGAT 59.609 40.741 5.49 0.00 40.07 3.73
144 145 6.709846 GGAGGAAGTAGCTTCTTATAGTACGA 59.290 42.308 5.49 0.00 40.07 3.43
145 146 6.347563 CGGAGGAAGTAGCTTCTTATAGTACG 60.348 46.154 5.49 3.39 40.07 3.67
146 147 6.486320 ACGGAGGAAGTAGCTTCTTATAGTAC 59.514 42.308 5.49 0.00 40.07 2.73
147 148 6.599445 ACGGAGGAAGTAGCTTCTTATAGTA 58.401 40.000 5.49 0.00 40.07 1.82
148 149 5.447757 ACGGAGGAAGTAGCTTCTTATAGT 58.552 41.667 5.49 0.42 40.07 2.12
149 150 5.048573 GGACGGAGGAAGTAGCTTCTTATAG 60.049 48.000 5.49 0.00 40.07 1.31
150 151 4.826183 GGACGGAGGAAGTAGCTTCTTATA 59.174 45.833 5.49 0.00 40.07 0.98
151 152 3.637694 GGACGGAGGAAGTAGCTTCTTAT 59.362 47.826 5.49 0.00 40.07 1.73
152 153 3.022406 GGACGGAGGAAGTAGCTTCTTA 58.978 50.000 5.49 0.00 40.07 2.10
153 154 1.826096 GGACGGAGGAAGTAGCTTCTT 59.174 52.381 5.14 5.14 40.07 2.52
154 155 1.476477 GGACGGAGGAAGTAGCTTCT 58.524 55.000 8.52 0.00 40.07 2.85
155 156 0.460722 GGGACGGAGGAAGTAGCTTC 59.539 60.000 0.00 0.58 39.52 3.86
156 157 0.252103 TGGGACGGAGGAAGTAGCTT 60.252 55.000 0.00 0.00 0.00 3.74
157 158 0.032017 ATGGGACGGAGGAAGTAGCT 60.032 55.000 0.00 0.00 0.00 3.32
158 159 1.700955 TATGGGACGGAGGAAGTAGC 58.299 55.000 0.00 0.00 0.00 3.58
159 160 3.641906 ACATTATGGGACGGAGGAAGTAG 59.358 47.826 0.00 0.00 0.00 2.57
160 161 3.649843 ACATTATGGGACGGAGGAAGTA 58.350 45.455 0.00 0.00 0.00 2.24
161 162 2.478292 ACATTATGGGACGGAGGAAGT 58.522 47.619 0.00 0.00 0.00 3.01
162 163 4.344102 TCTTACATTATGGGACGGAGGAAG 59.656 45.833 0.00 0.00 0.00 3.46
163 164 4.100498 GTCTTACATTATGGGACGGAGGAA 59.900 45.833 0.00 0.00 0.00 3.36
164 165 3.640029 GTCTTACATTATGGGACGGAGGA 59.360 47.826 0.00 0.00 0.00 3.71
165 166 3.552273 CGTCTTACATTATGGGACGGAGG 60.552 52.174 20.50 5.87 43.69 4.30
166 167 3.639538 CGTCTTACATTATGGGACGGAG 58.360 50.000 20.50 2.74 43.69 4.63
167 168 3.720949 CGTCTTACATTATGGGACGGA 57.279 47.619 20.50 2.30 43.69 4.69
206 207 5.122711 CCGTCCCATAATGTAAGACGTTTTT 59.877 40.000 9.63 0.00 46.62 1.94
207 208 4.632688 CCGTCCCATAATGTAAGACGTTTT 59.367 41.667 9.63 0.00 46.62 2.43
208 209 4.081531 TCCGTCCCATAATGTAAGACGTTT 60.082 41.667 9.63 0.00 46.62 3.60
209 210 3.448301 TCCGTCCCATAATGTAAGACGTT 59.552 43.478 9.63 0.00 46.62 3.99
210 211 3.025978 TCCGTCCCATAATGTAAGACGT 58.974 45.455 9.63 0.00 46.62 4.34
212 213 3.244112 CCCTCCGTCCCATAATGTAAGAC 60.244 52.174 0.00 0.00 0.00 3.01
213 214 2.969950 CCCTCCGTCCCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
214 215 2.969950 TCCCTCCGTCCCATAATGTAAG 59.030 50.000 0.00 0.00 0.00 2.34
215 216 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
216 217 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
217 218 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
218 219 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
219 220 2.179424 AGTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
220 221 1.572415 AGTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
221 222 1.229131 AGTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
222 223 1.229131 TAGTACTCCCTCCGTCCCAT 58.771 55.000 0.00 0.00 0.00 4.00
223 224 1.002069 TTAGTACTCCCTCCGTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
224 225 2.378378 ATTAGTACTCCCTCCGTCCC 57.622 55.000 0.00 0.00 0.00 4.46
225 226 5.123027 CGTATAATTAGTACTCCCTCCGTCC 59.877 48.000 0.00 0.00 0.00 4.79
226 227 5.703130 ACGTATAATTAGTACTCCCTCCGTC 59.297 44.000 0.00 0.00 0.00 4.79
227 228 5.625150 ACGTATAATTAGTACTCCCTCCGT 58.375 41.667 0.00 0.00 0.00 4.69
228 229 7.254252 CGATACGTATAATTAGTACTCCCTCCG 60.254 44.444 8.34 0.00 0.00 4.63
229 230 7.766278 TCGATACGTATAATTAGTACTCCCTCC 59.234 40.741 8.34 0.00 0.00 4.30
230 231 8.709386 TCGATACGTATAATTAGTACTCCCTC 57.291 38.462 8.34 0.00 0.00 4.30
231 232 8.317679 ACTCGATACGTATAATTAGTACTCCCT 58.682 37.037 8.34 0.00 0.00 4.20
232 233 8.386606 CACTCGATACGTATAATTAGTACTCCC 58.613 40.741 8.34 0.00 0.00 4.30
233 234 8.930760 ACACTCGATACGTATAATTAGTACTCC 58.069 37.037 8.34 0.00 0.00 3.85
245 246 9.823098 GATGATAAAGTTACACTCGATACGTAT 57.177 33.333 8.05 8.05 0.00 3.06
246 247 9.049523 AGATGATAAAGTTACACTCGATACGTA 57.950 33.333 0.00 0.00 0.00 3.57
247 248 7.928103 AGATGATAAAGTTACACTCGATACGT 58.072 34.615 0.00 0.00 0.00 3.57
248 249 8.068380 TGAGATGATAAAGTTACACTCGATACG 58.932 37.037 0.00 0.00 0.00 3.06
249 250 9.900710 ATGAGATGATAAAGTTACACTCGATAC 57.099 33.333 0.00 0.00 0.00 2.24
252 253 9.899226 CATATGAGATGATAAAGTTACACTCGA 57.101 33.333 0.00 0.00 0.00 4.04
253 254 9.684448 ACATATGAGATGATAAAGTTACACTCG 57.316 33.333 10.38 0.00 0.00 4.18
307 308 8.982723 TCTAGAAAGAGCAGGATAAAGTTACAT 58.017 33.333 0.00 0.00 0.00 2.29
308 309 8.251721 GTCTAGAAAGAGCAGGATAAAGTTACA 58.748 37.037 0.00 0.00 30.45 2.41
309 310 8.251721 TGTCTAGAAAGAGCAGGATAAAGTTAC 58.748 37.037 0.00 0.00 30.45 2.50
310 311 8.362464 TGTCTAGAAAGAGCAGGATAAAGTTA 57.638 34.615 0.00 0.00 30.45 2.24
311 312 7.246171 TGTCTAGAAAGAGCAGGATAAAGTT 57.754 36.000 0.00 0.00 30.45 2.66
312 313 6.859112 TGTCTAGAAAGAGCAGGATAAAGT 57.141 37.500 0.00 0.00 30.45 2.66
313 314 6.705381 CCATGTCTAGAAAGAGCAGGATAAAG 59.295 42.308 0.00 0.00 30.45 1.85
314 315 6.156949 ACCATGTCTAGAAAGAGCAGGATAAA 59.843 38.462 0.00 0.00 30.45 1.40
315 316 5.663106 ACCATGTCTAGAAAGAGCAGGATAA 59.337 40.000 0.00 0.00 30.45 1.75
316 317 5.211973 ACCATGTCTAGAAAGAGCAGGATA 58.788 41.667 0.00 0.00 30.45 2.59
317 318 4.036518 ACCATGTCTAGAAAGAGCAGGAT 58.963 43.478 0.00 0.00 30.45 3.24
318 319 3.445008 ACCATGTCTAGAAAGAGCAGGA 58.555 45.455 0.00 0.00 30.45 3.86
319 320 3.902881 ACCATGTCTAGAAAGAGCAGG 57.097 47.619 0.00 0.00 30.45 4.85
320 321 5.083533 AGAACCATGTCTAGAAAGAGCAG 57.916 43.478 0.00 0.00 30.45 4.24
321 322 4.774726 AGAGAACCATGTCTAGAAAGAGCA 59.225 41.667 0.00 0.00 30.45 4.26
322 323 5.337578 AGAGAACCATGTCTAGAAAGAGC 57.662 43.478 0.00 0.00 30.45 4.09
323 324 5.355630 TCGAGAGAACCATGTCTAGAAAGAG 59.644 44.000 0.00 0.00 37.03 2.85
324 325 5.254115 TCGAGAGAACCATGTCTAGAAAGA 58.746 41.667 0.00 0.00 37.03 2.52
325 326 5.124776 ACTCGAGAGAACCATGTCTAGAAAG 59.875 44.000 21.68 0.00 41.32 2.62
326 327 5.010933 ACTCGAGAGAACCATGTCTAGAAA 58.989 41.667 21.68 0.00 41.32 2.52
327 328 4.590918 ACTCGAGAGAACCATGTCTAGAA 58.409 43.478 21.68 0.00 41.32 2.10
328 329 4.080807 AGACTCGAGAGAACCATGTCTAGA 60.081 45.833 21.68 0.00 38.41 2.43
329 330 4.196193 AGACTCGAGAGAACCATGTCTAG 58.804 47.826 21.68 0.00 38.41 2.43
330 331 4.223556 AGACTCGAGAGAACCATGTCTA 57.776 45.455 21.68 0.00 38.41 2.59
357 358 1.345415 CCAAGTGAAGCAAATGCCCTT 59.655 47.619 0.94 0.00 43.38 3.95
374 375 3.594775 CGTGCAGCCAACAGCCAA 61.595 61.111 0.00 0.00 45.47 4.52
391 392 2.832129 TGGTCAGATGGGAACTACTGTC 59.168 50.000 0.00 0.00 36.29 3.51
397 398 3.846588 ACAAGTATGGTCAGATGGGAACT 59.153 43.478 0.00 0.00 0.00 3.01
402 403 6.037940 CAGATTTCACAAGTATGGTCAGATGG 59.962 42.308 0.00 0.00 0.00 3.51
403 404 6.457934 GCAGATTTCACAAGTATGGTCAGATG 60.458 42.308 0.00 0.00 0.00 2.90
421 437 3.890756 TGTGATCAACAACCTGCAGATTT 59.109 39.130 17.39 4.86 35.24 2.17
432 448 0.660488 GTGCGTGGTGTGATCAACAA 59.340 50.000 0.00 0.00 43.29 2.83
433 449 0.179059 AGTGCGTGGTGTGATCAACA 60.179 50.000 0.00 0.00 39.13 3.33
441 457 1.411246 TCTTGAAGTAGTGCGTGGTGT 59.589 47.619 0.00 0.00 0.00 4.16
449 465 2.989840 CGTCCTGCTTCTTGAAGTAGTG 59.010 50.000 20.98 14.72 31.67 2.74
493 509 0.389556 AGTGACATGCAGCGTCTCAG 60.390 55.000 17.25 0.00 34.37 3.35
498 514 1.669115 GGTCAGTGACATGCAGCGT 60.669 57.895 24.20 0.00 33.68 5.07
502 518 0.599991 GTCGTGGTCAGTGACATGCA 60.600 55.000 24.20 10.78 33.68 3.96
506 522 1.544246 CATAGGTCGTGGTCAGTGACA 59.456 52.381 24.20 8.31 33.68 3.58
512 528 0.682292 TTGTGCATAGGTCGTGGTCA 59.318 50.000 0.00 0.00 0.00 4.02
513 529 1.803334 TTTGTGCATAGGTCGTGGTC 58.197 50.000 0.00 0.00 0.00 4.02
514 530 2.151202 CTTTTGTGCATAGGTCGTGGT 58.849 47.619 0.00 0.00 0.00 4.16
516 532 1.806542 AGCTTTTGTGCATAGGTCGTG 59.193 47.619 0.00 0.00 34.99 4.35
517 533 2.076863 GAGCTTTTGTGCATAGGTCGT 58.923 47.619 0.00 0.00 34.99 4.34
518 534 2.076100 TGAGCTTTTGTGCATAGGTCG 58.924 47.619 12.44 0.00 38.81 4.79
520 536 1.815003 GCTGAGCTTTTGTGCATAGGT 59.185 47.619 0.00 0.00 34.99 3.08
521 537 1.202110 CGCTGAGCTTTTGTGCATAGG 60.202 52.381 1.78 0.00 34.99 2.57
522 538 1.792993 GCGCTGAGCTTTTGTGCATAG 60.793 52.381 1.78 0.00 44.04 2.23
523 539 0.168788 GCGCTGAGCTTTTGTGCATA 59.831 50.000 1.78 0.00 44.04 3.14
524 540 1.080974 GCGCTGAGCTTTTGTGCAT 60.081 52.632 1.78 0.00 44.04 3.96
525 541 2.332514 GCGCTGAGCTTTTGTGCA 59.667 55.556 1.78 0.00 44.04 4.57
569 585 0.691078 TCATACAGAGGGACAGGGCC 60.691 60.000 0.00 0.00 0.00 5.80
570 586 1.071385 CATCATACAGAGGGACAGGGC 59.929 57.143 0.00 0.00 0.00 5.19
571 587 1.071385 GCATCATACAGAGGGACAGGG 59.929 57.143 0.00 0.00 0.00 4.45
572 588 1.764723 TGCATCATACAGAGGGACAGG 59.235 52.381 0.00 0.00 0.00 4.00
573 589 2.831333 GTGCATCATACAGAGGGACAG 58.169 52.381 0.00 0.00 46.76 3.51
574 590 2.988010 GTGCATCATACAGAGGGACA 57.012 50.000 0.00 0.00 46.76 4.02
575 591 1.137086 ACGTGCATCATACAGAGGGAC 59.863 52.381 0.00 0.00 44.53 4.46
576 592 1.409064 GACGTGCATCATACAGAGGGA 59.591 52.381 0.00 0.00 0.00 4.20
577 593 1.539065 GGACGTGCATCATACAGAGGG 60.539 57.143 0.63 0.00 0.00 4.30
578 594 1.136891 TGGACGTGCATCATACAGAGG 59.863 52.381 5.33 0.00 0.00 3.69
579 595 2.159184 ACTGGACGTGCATCATACAGAG 60.159 50.000 11.16 0.00 0.00 3.35
580 596 1.824852 ACTGGACGTGCATCATACAGA 59.175 47.619 11.16 0.00 0.00 3.41
581 597 2.299993 ACTGGACGTGCATCATACAG 57.700 50.000 11.16 0.00 0.00 2.74
582 598 3.132111 ACATACTGGACGTGCATCATACA 59.868 43.478 11.16 0.00 0.00 2.29
583 599 3.717707 ACATACTGGACGTGCATCATAC 58.282 45.455 11.16 0.00 0.00 2.39
584 600 5.722021 ATACATACTGGACGTGCATCATA 57.278 39.130 11.16 4.24 0.00 2.15
585 601 2.988010 ACATACTGGACGTGCATCAT 57.012 45.000 11.16 3.85 0.00 2.45
586 602 5.469479 CATATACATACTGGACGTGCATCA 58.531 41.667 11.16 1.17 0.00 3.07
587 603 4.327357 GCATATACATACTGGACGTGCATC 59.673 45.833 11.16 0.00 0.00 3.91
588 604 4.245660 GCATATACATACTGGACGTGCAT 58.754 43.478 11.16 3.71 0.00 3.96
589 605 3.068873 TGCATATACATACTGGACGTGCA 59.931 43.478 10.11 10.11 37.69 4.57
590 606 3.649073 TGCATATACATACTGGACGTGC 58.351 45.455 0.00 0.00 0.00 5.34
591 607 7.883229 TTATTGCATATACATACTGGACGTG 57.117 36.000 0.00 0.00 0.00 4.49
592 608 8.094548 ACATTATTGCATATACATACTGGACGT 58.905 33.333 0.00 0.00 0.00 4.34
593 609 8.479313 ACATTATTGCATATACATACTGGACG 57.521 34.615 0.00 0.00 0.00 4.79
598 614 9.942850 TGCAGTACATTATTGCATATACATACT 57.057 29.630 2.83 0.00 44.84 2.12
609 625 4.142902 ACGTGACTTGCAGTACATTATTGC 60.143 41.667 0.00 0.00 41.23 3.56
610 626 5.107104 ACACGTGACTTGCAGTACATTATTG 60.107 40.000 25.01 0.00 0.00 1.90
611 627 4.994852 ACACGTGACTTGCAGTACATTATT 59.005 37.500 25.01 0.00 0.00 1.40
612 628 4.566004 ACACGTGACTTGCAGTACATTAT 58.434 39.130 25.01 0.00 0.00 1.28
613 629 3.985008 ACACGTGACTTGCAGTACATTA 58.015 40.909 25.01 0.00 0.00 1.90
614 630 2.833794 ACACGTGACTTGCAGTACATT 58.166 42.857 25.01 0.00 0.00 2.71
615 631 2.526304 ACACGTGACTTGCAGTACAT 57.474 45.000 25.01 0.00 0.00 2.29
616 632 2.359848 AGTACACGTGACTTGCAGTACA 59.640 45.455 25.01 0.00 35.51 2.90
617 633 3.009301 AGTACACGTGACTTGCAGTAC 57.991 47.619 25.01 11.39 33.80 2.73
618 634 3.635331 GAAGTACACGTGACTTGCAGTA 58.365 45.455 26.94 6.22 37.27 2.74
619 635 2.470821 GAAGTACACGTGACTTGCAGT 58.529 47.619 26.94 11.47 37.27 4.40
620 636 1.452025 CGAAGTACACGTGACTTGCAG 59.548 52.381 26.94 17.85 37.27 4.41
621 637 1.202325 ACGAAGTACACGTGACTTGCA 60.202 47.619 26.94 4.89 41.94 4.08
622 638 1.484356 ACGAAGTACACGTGACTTGC 58.516 50.000 26.94 19.44 41.94 4.01
634 650 1.171308 AAGGAGCAGCGTACGAAGTA 58.829 50.000 21.65 0.00 45.11 2.24
636 652 1.429463 AAAAGGAGCAGCGTACGAAG 58.571 50.000 21.65 11.32 0.00 3.79
637 653 1.529438 CAAAAAGGAGCAGCGTACGAA 59.471 47.619 21.65 0.00 0.00 3.85
638 654 1.144969 CAAAAAGGAGCAGCGTACGA 58.855 50.000 21.65 0.00 0.00 3.43
639 655 0.165944 CCAAAAAGGAGCAGCGTACG 59.834 55.000 11.84 11.84 41.22 3.67
640 656 0.109735 GCCAAAAAGGAGCAGCGTAC 60.110 55.000 0.00 0.00 41.22 3.67
641 657 0.250727 AGCCAAAAAGGAGCAGCGTA 60.251 50.000 0.00 0.00 41.22 4.42
642 658 1.518903 GAGCCAAAAAGGAGCAGCGT 61.519 55.000 0.00 0.00 41.22 5.07
643 659 1.211190 GAGCCAAAAAGGAGCAGCG 59.789 57.895 0.00 0.00 41.22 5.18
644 660 0.897401 AGGAGCCAAAAAGGAGCAGC 60.897 55.000 0.00 0.00 41.22 5.25
645 661 1.271656 CAAGGAGCCAAAAAGGAGCAG 59.728 52.381 0.00 0.00 41.22 4.24
646 662 1.133513 TCAAGGAGCCAAAAAGGAGCA 60.134 47.619 0.00 0.00 41.22 4.26
647 663 1.543358 CTCAAGGAGCCAAAAAGGAGC 59.457 52.381 0.00 0.00 41.22 4.70
659 675 4.666655 CGACACAAATAAACGCTCAAGGAG 60.667 45.833 0.00 0.00 0.00 3.69
660 676 3.185594 CGACACAAATAAACGCTCAAGGA 59.814 43.478 0.00 0.00 0.00 3.36
661 677 3.059188 ACGACACAAATAAACGCTCAAGG 60.059 43.478 0.00 0.00 0.00 3.61
662 678 4.128554 ACGACACAAATAAACGCTCAAG 57.871 40.909 0.00 0.00 0.00 3.02
663 679 4.201832 ACAACGACACAAATAAACGCTCAA 60.202 37.500 0.00 0.00 0.00 3.02
664 680 3.310227 ACAACGACACAAATAAACGCTCA 59.690 39.130 0.00 0.00 0.00 4.26
665 681 3.868835 ACAACGACACAAATAAACGCTC 58.131 40.909 0.00 0.00 0.00 5.03
666 682 3.955771 ACAACGACACAAATAAACGCT 57.044 38.095 0.00 0.00 0.00 5.07
667 683 4.731480 AGAAACAACGACACAAATAAACGC 59.269 37.500 0.00 0.00 0.00 4.84
668 684 5.330498 GCAGAAACAACGACACAAATAAACG 60.330 40.000 0.00 0.00 0.00 3.60
669 685 5.741982 AGCAGAAACAACGACACAAATAAAC 59.258 36.000 0.00 0.00 0.00 2.01
670 686 5.741510 CAGCAGAAACAACGACACAAATAAA 59.258 36.000 0.00 0.00 0.00 1.40
671 687 5.065346 TCAGCAGAAACAACGACACAAATAA 59.935 36.000 0.00 0.00 0.00 1.40
672 688 4.572795 TCAGCAGAAACAACGACACAAATA 59.427 37.500 0.00 0.00 0.00 1.40
673 689 3.376859 TCAGCAGAAACAACGACACAAAT 59.623 39.130 0.00 0.00 0.00 2.32
674 690 2.744741 TCAGCAGAAACAACGACACAAA 59.255 40.909 0.00 0.00 0.00 2.83
675 691 2.095213 GTCAGCAGAAACAACGACACAA 59.905 45.455 0.00 0.00 0.00 3.33
676 692 1.663643 GTCAGCAGAAACAACGACACA 59.336 47.619 0.00 0.00 0.00 3.72
677 693 1.663643 TGTCAGCAGAAACAACGACAC 59.336 47.619 0.00 0.00 0.00 3.67
678 694 1.663643 GTGTCAGCAGAAACAACGACA 59.336 47.619 0.00 0.00 31.94 4.35
679 695 1.663643 TGTGTCAGCAGAAACAACGAC 59.336 47.619 0.00 0.00 39.03 4.34
680 696 1.663643 GTGTGTCAGCAGAAACAACGA 59.336 47.619 3.32 0.00 43.42 3.85
681 697 1.396648 TGTGTGTCAGCAGAAACAACG 59.603 47.619 3.32 0.00 43.42 4.10
682 698 3.065233 TGATGTGTGTCAGCAGAAACAAC 59.935 43.478 3.32 0.09 43.42 3.32
683 699 3.277715 TGATGTGTGTCAGCAGAAACAA 58.722 40.909 3.32 0.00 43.42 2.83
684 700 2.916640 TGATGTGTGTCAGCAGAAACA 58.083 42.857 0.00 0.00 39.68 2.83
685 701 5.611796 TTATGATGTGTGTCAGCAGAAAC 57.388 39.130 0.00 0.00 45.72 2.78
687 703 6.656270 AGAATTTATGATGTGTGTCAGCAGAA 59.344 34.615 0.00 0.00 45.72 3.02
688 704 6.175471 AGAATTTATGATGTGTGTCAGCAGA 58.825 36.000 0.00 0.00 45.72 4.26
689 705 6.432607 AGAATTTATGATGTGTGTCAGCAG 57.567 37.500 0.00 0.00 45.72 4.24
690 706 6.822667 AAGAATTTATGATGTGTGTCAGCA 57.177 33.333 0.00 0.00 46.57 4.41
691 707 7.978982 ACTAAGAATTTATGATGTGTGTCAGC 58.021 34.615 0.00 0.00 0.00 4.26
693 709 9.378551 GGTACTAAGAATTTATGATGTGTGTCA 57.621 33.333 0.00 0.00 0.00 3.58
694 710 9.378551 TGGTACTAAGAATTTATGATGTGTGTC 57.621 33.333 0.00 0.00 0.00 3.67
695 711 9.383519 CTGGTACTAAGAATTTATGATGTGTGT 57.616 33.333 0.00 0.00 0.00 3.72
696 712 8.830580 CCTGGTACTAAGAATTTATGATGTGTG 58.169 37.037 0.00 0.00 0.00 3.82
697 713 7.499232 GCCTGGTACTAAGAATTTATGATGTGT 59.501 37.037 0.00 0.00 0.00 3.72
698 714 7.041098 GGCCTGGTACTAAGAATTTATGATGTG 60.041 40.741 0.00 0.00 0.00 3.21
699 715 6.998673 GGCCTGGTACTAAGAATTTATGATGT 59.001 38.462 0.00 0.00 0.00 3.06
700 716 6.998074 TGGCCTGGTACTAAGAATTTATGATG 59.002 38.462 3.32 0.00 0.00 3.07
701 717 7.149202 TGGCCTGGTACTAAGAATTTATGAT 57.851 36.000 3.32 0.00 0.00 2.45
702 718 6.569127 TGGCCTGGTACTAAGAATTTATGA 57.431 37.500 3.32 0.00 0.00 2.15
703 719 6.238759 GCTTGGCCTGGTACTAAGAATTTATG 60.239 42.308 3.32 0.00 0.00 1.90
704 720 5.828328 GCTTGGCCTGGTACTAAGAATTTAT 59.172 40.000 3.32 0.00 0.00 1.40
705 721 5.190677 GCTTGGCCTGGTACTAAGAATTTA 58.809 41.667 3.32 0.00 0.00 1.40
706 722 4.017126 GCTTGGCCTGGTACTAAGAATTT 58.983 43.478 3.32 0.00 0.00 1.82
707 723 3.621558 GCTTGGCCTGGTACTAAGAATT 58.378 45.455 3.32 0.00 0.00 2.17
708 724 2.092375 GGCTTGGCCTGGTACTAAGAAT 60.092 50.000 3.32 0.00 46.69 2.40
709 725 1.280998 GGCTTGGCCTGGTACTAAGAA 59.719 52.381 3.32 0.00 46.69 2.52
710 726 0.909623 GGCTTGGCCTGGTACTAAGA 59.090 55.000 3.32 0.00 46.69 2.10
711 727 3.478540 GGCTTGGCCTGGTACTAAG 57.521 57.895 3.32 0.00 46.69 2.18
920 946 2.186903 CGGGCACGCCAACTATCT 59.813 61.111 10.83 0.00 37.98 1.98
1001 1029 2.798283 GCCGTGCGCTTATATAAAGTCA 59.202 45.455 9.73 0.00 0.00 3.41
1071 1100 2.283966 ACGGACAGGGAGGGAGTG 60.284 66.667 0.00 0.00 0.00 3.51
1075 1104 3.775654 GCAGACGGACAGGGAGGG 61.776 72.222 0.00 0.00 0.00 4.30
1076 1105 2.681778 AGCAGACGGACAGGGAGG 60.682 66.667 0.00 0.00 0.00 4.30
1153 1184 1.230497 GGGAGGGATCGTGAGGAGA 59.770 63.158 0.00 0.00 0.00 3.71
1154 1185 1.834822 GGGGAGGGATCGTGAGGAG 60.835 68.421 0.00 0.00 0.00 3.69
1155 1186 2.282446 GGGGAGGGATCGTGAGGA 59.718 66.667 0.00 0.00 0.00 3.71
1156 1187 2.844839 GGGGGAGGGATCGTGAGG 60.845 72.222 0.00 0.00 0.00 3.86
1157 1188 2.041922 TGGGGGAGGGATCGTGAG 60.042 66.667 0.00 0.00 0.00 3.51
1158 1189 2.365105 GTGGGGGAGGGATCGTGA 60.365 66.667 0.00 0.00 0.00 4.35
1159 1190 2.365635 AGTGGGGGAGGGATCGTG 60.366 66.667 0.00 0.00 0.00 4.35
1160 1191 2.041819 GAGTGGGGGAGGGATCGT 60.042 66.667 0.00 0.00 0.00 3.73
1161 1192 2.844839 GGAGTGGGGGAGGGATCG 60.845 72.222 0.00 0.00 0.00 3.69
1232 1263 2.831366 ATGGACGACGACGATCGGG 61.831 63.158 20.98 13.29 45.59 5.14
1239 1270 1.153823 CCTCACCATGGACGACGAC 60.154 63.158 21.47 0.00 0.00 4.34
1266 1309 2.222886 GAGGAGTAGCAGCTGTCGATA 58.777 52.381 16.64 0.82 0.00 2.92
1330 1373 0.693049 AGTGGAGGTGTGGATGGAAC 59.307 55.000 0.00 0.00 0.00 3.62
1335 1378 2.982488 AGAAGAAAGTGGAGGTGTGGAT 59.018 45.455 0.00 0.00 0.00 3.41
1341 1384 1.700186 GGTGGAGAAGAAAGTGGAGGT 59.300 52.381 0.00 0.00 0.00 3.85
1348 1391 0.737715 CTCGCCGGTGGAGAAGAAAG 60.738 60.000 16.49 0.00 29.80 2.62
1349 1392 1.183030 TCTCGCCGGTGGAGAAGAAA 61.183 55.000 20.57 2.77 37.59 2.52
1350 1393 1.605451 TCTCGCCGGTGGAGAAGAA 60.605 57.895 20.57 3.08 37.59 2.52
1351 1394 2.035155 TCTCGCCGGTGGAGAAGA 59.965 61.111 20.57 11.61 37.59 2.87
1393 1436 5.864474 TCAGAAAAGAAGTCGAGCTATGAAC 59.136 40.000 0.00 0.00 0.00 3.18
1409 1452 4.174009 CCATCAGCAGCAAATCAGAAAAG 58.826 43.478 0.00 0.00 0.00 2.27
1410 1453 3.615592 GCCATCAGCAGCAAATCAGAAAA 60.616 43.478 0.00 0.00 42.97 2.29
1519 1562 1.292541 GACGACGCCCTTCTTCCTT 59.707 57.895 0.00 0.00 0.00 3.36
1861 1910 3.153130 TCATAGAGAGAAGGGATCAGCG 58.847 50.000 0.00 0.00 0.00 5.18
1892 1941 6.579666 AAATTCAGCAACAGTGTGTCATAT 57.420 33.333 0.00 0.00 0.00 1.78
1893 1942 6.183360 ACAAAATTCAGCAACAGTGTGTCATA 60.183 34.615 0.00 0.00 0.00 2.15
1894 1943 4.924305 AAATTCAGCAACAGTGTGTCAT 57.076 36.364 0.00 0.00 0.00 3.06
1895 1944 4.082300 ACAAAATTCAGCAACAGTGTGTCA 60.082 37.500 0.00 0.00 0.00 3.58
1896 1945 4.423732 ACAAAATTCAGCAACAGTGTGTC 58.576 39.130 0.00 0.00 0.00 3.67
1903 1963 5.486526 ACAAAGGAACAAAATTCAGCAACA 58.513 33.333 0.00 0.00 0.00 3.33
1949 2010 5.473504 AGGATCAACTTACACACATCAAACC 59.526 40.000 0.00 0.00 0.00 3.27
1977 2038 5.766174 TCCATTACCAGGACACAAAAACTAC 59.234 40.000 0.00 0.00 0.00 2.73
2143 2205 6.543465 TGTCATCCAGCTTATGAAATTAGTGG 59.457 38.462 9.55 0.00 35.23 4.00
2148 2210 7.893124 ATCTTGTCATCCAGCTTATGAAATT 57.107 32.000 9.55 0.00 35.23 1.82
2152 2214 8.985315 AATTTATCTTGTCATCCAGCTTATGA 57.015 30.769 4.69 4.69 0.00 2.15
2163 2225 8.756486 TCCATCACATGAATTTATCTTGTCAT 57.244 30.769 0.00 0.00 42.68 3.06
2227 2289 1.284657 CCAGCGAGTTGACTGCATAG 58.715 55.000 0.00 0.00 32.37 2.23
2253 2315 3.508793 CCTTGATGTTGTGCTCCAATTCT 59.491 43.478 0.00 0.00 35.02 2.40
2271 2333 1.000938 GAGCCTTGACTGCAAACCTTG 60.001 52.381 0.00 0.00 32.73 3.61
2316 2378 2.445525 TGGACTTACCTGGAGCCTTTTT 59.554 45.455 0.00 0.00 39.86 1.94
2317 2379 2.062636 TGGACTTACCTGGAGCCTTTT 58.937 47.619 0.00 0.00 39.86 2.27
2318 2380 1.742308 TGGACTTACCTGGAGCCTTT 58.258 50.000 0.00 0.00 39.86 3.11
2319 2381 1.561542 CATGGACTTACCTGGAGCCTT 59.438 52.381 0.00 0.00 39.86 4.35
2320 2382 1.207791 CATGGACTTACCTGGAGCCT 58.792 55.000 0.00 0.00 39.86 4.58
2321 2383 0.464554 GCATGGACTTACCTGGAGCC 60.465 60.000 0.00 0.00 39.86 4.70
2322 2384 0.253044 TGCATGGACTTACCTGGAGC 59.747 55.000 0.00 0.00 39.86 4.70
2323 2385 2.359900 GTTGCATGGACTTACCTGGAG 58.640 52.381 0.00 0.00 39.86 3.86
2324 2386 1.004277 GGTTGCATGGACTTACCTGGA 59.996 52.381 0.00 0.00 39.86 3.86
2325 2387 1.271871 TGGTTGCATGGACTTACCTGG 60.272 52.381 7.91 0.00 39.86 4.45
2326 2388 2.086869 CTGGTTGCATGGACTTACCTG 58.913 52.381 7.91 4.04 39.86 4.00
2327 2389 1.705186 ACTGGTTGCATGGACTTACCT 59.295 47.619 7.91 0.00 39.86 3.08
2328 2390 2.200373 ACTGGTTGCATGGACTTACC 57.800 50.000 0.00 0.00 39.54 2.85
2329 2391 3.007635 GGTACTGGTTGCATGGACTTAC 58.992 50.000 0.00 0.00 0.00 2.34
2330 2392 2.026636 GGGTACTGGTTGCATGGACTTA 60.027 50.000 0.00 0.00 0.00 2.24
2331 2393 1.271926 GGGTACTGGTTGCATGGACTT 60.272 52.381 0.00 0.00 0.00 3.01
2428 2490 8.854614 ACTCACTGCATAGAAAGAAAATAACT 57.145 30.769 0.00 0.00 0.00 2.24
2617 2760 8.687824 AATCATATTCACCGTTTTTCACATTC 57.312 30.769 0.00 0.00 0.00 2.67
2785 2932 6.464039 GGAGTCAGGTTTACAAAGGACTAACT 60.464 42.308 0.00 0.00 35.88 2.24
2839 2986 7.658575 CCAGAAAGACCATTTTGACATCAAATT 59.341 33.333 7.83 2.35 44.30 1.82
2849 2996 4.144297 TCTGTCCCAGAAAGACCATTTTG 58.856 43.478 0.00 0.00 37.57 2.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.