Multiple sequence alignment - TraesCS3D01G345800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G345800 chr3D 100.000 3117 0 0 999 4115 457229868 457232984 0.000000e+00 5757.0
1 TraesCS3D01G345800 chr3D 100.000 802 0 0 1 802 457228870 457229671 0.000000e+00 1482.0
2 TraesCS3D01G345800 chr3A 96.230 2122 73 4 999 3119 600021749 600023864 0.000000e+00 3469.0
3 TraesCS3D01G345800 chr3A 89.979 968 45 32 3193 4114 600023832 600024793 0.000000e+00 1203.0
4 TraesCS3D01G345800 chr3A 93.103 58 3 1 3135 3191 600024007 600024064 2.640000e-12 84.2
5 TraesCS3D01G345800 chr3B 95.595 2111 67 6 1023 3116 604268962 604271063 0.000000e+00 3360.0
6 TraesCS3D01G345800 chr3B 90.918 969 39 25 3193 4115 604271035 604272000 0.000000e+00 1256.0
7 TraesCS3D01G345800 chr3B 83.791 728 92 14 43 759 604247401 604248113 0.000000e+00 667.0
8 TraesCS3D01G345800 chr5D 92.900 1000 50 11 1660 2647 524597968 524596978 0.000000e+00 1434.0
9 TraesCS3D01G345800 chr6B 95.017 602 26 4 1661 2260 257597156 257597755 0.000000e+00 942.0
10 TraesCS3D01G345800 chr6B 88.647 414 36 7 2243 2647 257599019 257599430 1.030000e-135 494.0
11 TraesCS3D01G345800 chrUn 94.632 503 26 1 1660 2162 31913106 31912605 0.000000e+00 778.0
12 TraesCS3D01G345800 chrUn 92.553 94 7 0 1546 1639 31913190 31913097 7.180000e-28 135.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G345800 chr3D 457228870 457232984 4114 False 3619.5 5757 100.0000 1 4115 2 chr3D.!!$F1 4114
1 TraesCS3D01G345800 chr3A 600021749 600024793 3044 False 1585.4 3469 93.1040 999 4114 3 chr3A.!!$F1 3115
2 TraesCS3D01G345800 chr3B 604268962 604272000 3038 False 2308.0 3360 93.2565 1023 4115 2 chr3B.!!$F2 3092
3 TraesCS3D01G345800 chr3B 604247401 604248113 712 False 667.0 667 83.7910 43 759 1 chr3B.!!$F1 716
4 TraesCS3D01G345800 chr5D 524596978 524597968 990 True 1434.0 1434 92.9000 1660 2647 1 chr5D.!!$R1 987
5 TraesCS3D01G345800 chr6B 257597156 257599430 2274 False 718.0 942 91.8320 1661 2647 2 chr6B.!!$F1 986
6 TraesCS3D01G345800 chrUn 31912605 31913190 585 True 456.5 778 93.5925 1546 2162 2 chrUn.!!$R1 616

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
711 720 0.035439 ATCGTTTGAGGGCGTTGGAT 60.035 50.000 0.00 0.0 0.00 3.41 F
715 724 0.611618 TTTGAGGGCGTTGGATGCAT 60.612 50.000 0.00 0.0 0.00 3.96 F
801 810 0.657312 TGAACGTTCAAGTGCTGCTG 59.343 50.000 27.94 0.0 33.55 4.41 F
2765 4100 1.201647 GGTGTTCGACGAGATGAGGAA 59.798 52.381 0.00 0.0 0.00 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1710 1736 1.423584 TGAGGTTGGAGAAGAGCACA 58.576 50.0 0.00 0.0 0.0 4.57 R
2034 2064 1.795768 TGAGCACGATGTTGAAGACC 58.204 50.0 0.00 0.0 0.0 3.85 R
2799 4134 1.082117 CGTAGGCGTTCATGGTGACC 61.082 60.0 0.00 0.0 0.0 4.02 R
3718 5094 0.107831 GCCACGCCATATGTCCCTTA 59.892 55.0 1.24 0.0 0.0 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.930667 TGTCATGGATCATGTTTATCACTG 57.069 37.500 7.63 0.00 41.98 3.66
25 26 5.297527 TGTCATGGATCATGTTTATCACTGC 59.702 40.000 7.63 0.00 41.98 4.40
26 27 5.297527 GTCATGGATCATGTTTATCACTGCA 59.702 40.000 7.63 0.00 41.98 4.41
27 28 6.016527 GTCATGGATCATGTTTATCACTGCAT 60.017 38.462 7.63 0.00 41.98 3.96
28 29 6.206048 TCATGGATCATGTTTATCACTGCATC 59.794 38.462 7.63 0.00 41.98 3.91
29 30 4.823442 TGGATCATGTTTATCACTGCATCC 59.177 41.667 0.00 0.00 0.00 3.51
30 31 4.217118 GGATCATGTTTATCACTGCATCCC 59.783 45.833 0.00 0.00 0.00 3.85
31 32 4.508551 TCATGTTTATCACTGCATCCCT 57.491 40.909 0.00 0.00 0.00 4.20
32 33 4.201657 TCATGTTTATCACTGCATCCCTG 58.798 43.478 0.00 0.00 0.00 4.45
33 34 3.719268 TGTTTATCACTGCATCCCTGT 57.281 42.857 0.00 0.00 0.00 4.00
34 35 3.346315 TGTTTATCACTGCATCCCTGTG 58.654 45.455 0.00 0.00 42.72 3.66
37 38 3.942351 TCACTGCATCCCTGTGAAG 57.058 52.632 3.44 0.00 45.65 3.02
38 39 1.059098 TCACTGCATCCCTGTGAAGT 58.941 50.000 3.44 0.00 45.65 3.01
39 40 1.002430 TCACTGCATCCCTGTGAAGTC 59.998 52.381 3.44 0.00 45.65 3.01
40 41 1.059098 ACTGCATCCCTGTGAAGTCA 58.941 50.000 0.00 0.00 0.00 3.41
41 42 1.271054 ACTGCATCCCTGTGAAGTCAC 60.271 52.381 4.43 4.43 46.59 3.67
59 60 2.111878 CATCCACCATCTCGCCCC 59.888 66.667 0.00 0.00 0.00 5.80
71 72 0.168128 CTCGCCCCGTTGAAACATTC 59.832 55.000 0.00 0.00 0.00 2.67
72 73 0.250553 TCGCCCCGTTGAAACATTCT 60.251 50.000 0.00 0.00 0.00 2.40
73 74 1.002201 TCGCCCCGTTGAAACATTCTA 59.998 47.619 0.00 0.00 0.00 2.10
85 86 7.571983 CGTTGAAACATTCTAGCAAACAGAGAT 60.572 37.037 0.00 0.00 0.00 2.75
126 127 2.408835 CGGCATCCGCAAATGGAC 59.591 61.111 0.00 0.00 41.85 4.02
149 150 2.126228 CCGGCGACTGCGACTAAA 60.126 61.111 9.30 0.00 45.51 1.85
155 156 0.109272 CGACTGCGACTAAAGCTCCA 60.109 55.000 0.00 0.00 40.82 3.86
169 170 2.826488 AGCTCCATGAAGGTGTAGTCT 58.174 47.619 0.00 0.00 39.02 3.24
171 172 2.497675 GCTCCATGAAGGTGTAGTCTCA 59.502 50.000 0.00 0.00 39.02 3.27
186 187 2.554893 AGTCTCAGTTGAGGTCGACTTC 59.445 50.000 19.92 19.92 42.30 3.01
206 207 2.006888 CGAACAATACTTGATGGCCGT 58.993 47.619 0.00 0.00 0.00 5.68
207 208 2.030457 CGAACAATACTTGATGGCCGTC 59.970 50.000 18.69 18.69 0.00 4.79
220 221 2.125673 CCGTCGGTGATGGTGGAC 60.126 66.667 2.08 0.00 34.27 4.02
221 222 2.654289 CGTCGGTGATGGTGGACA 59.346 61.111 0.00 0.00 0.00 4.02
222 223 1.218047 CGTCGGTGATGGTGGACAT 59.782 57.895 0.00 0.00 44.18 3.06
224 225 0.744414 GTCGGTGATGGTGGACATGG 60.744 60.000 0.00 0.00 40.72 3.66
226 227 0.744414 CGGTGATGGTGGACATGGAC 60.744 60.000 0.00 0.00 40.72 4.02
232 233 1.361204 TGGTGGACATGGACTGATGT 58.639 50.000 0.00 0.00 39.34 3.06
234 235 2.086869 GGTGGACATGGACTGATGTTG 58.913 52.381 0.00 0.00 36.67 3.33
265 266 2.763215 GGGGTGGAGGTGATTGCA 59.237 61.111 0.00 0.00 0.00 4.08
271 272 2.372264 GTGGAGGTGATTGCATGACAT 58.628 47.619 0.00 0.00 0.00 3.06
296 297 2.252260 CCGCTTCACACGCTTTGG 59.748 61.111 0.00 0.00 0.00 3.28
298 299 2.896801 CGCTTCACACGCTTTGGCT 61.897 57.895 0.00 0.00 36.09 4.75
307 308 1.192146 ACGCTTTGGCTGAGGAGGTA 61.192 55.000 0.00 0.00 36.09 3.08
308 309 0.179000 CGCTTTGGCTGAGGAGGTAT 59.821 55.000 0.00 0.00 36.09 2.73
310 311 2.019984 GCTTTGGCTGAGGAGGTATTG 58.980 52.381 0.00 0.00 35.22 1.90
315 316 1.204146 GCTGAGGAGGTATTGGGTGA 58.796 55.000 0.00 0.00 0.00 4.02
316 317 1.771255 GCTGAGGAGGTATTGGGTGAT 59.229 52.381 0.00 0.00 0.00 3.06
319 320 3.189606 TGAGGAGGTATTGGGTGATTGT 58.810 45.455 0.00 0.00 0.00 2.71
333 334 1.523154 GATTGTCCACCGCCAAAGCA 61.523 55.000 0.00 0.00 39.83 3.91
339 340 4.759205 ACCGCCAAAGCATCCCCC 62.759 66.667 0.00 0.00 39.83 5.40
367 368 3.192541 CCCCCTTCTTTTGTTTTGTGG 57.807 47.619 0.00 0.00 0.00 4.17
398 399 5.350091 GTGTTGCATTTTGTTGTGTTAACCT 59.650 36.000 2.48 0.00 0.00 3.50
402 403 4.331168 GCATTTTGTTGTGTTAACCTTGCA 59.669 37.500 2.48 0.00 0.00 4.08
405 406 3.006112 TGTTGTGTTAACCTTGCAGGA 57.994 42.857 2.48 0.00 37.67 3.86
412 413 1.729586 TAACCTTGCAGGAGACCACT 58.270 50.000 8.91 0.00 37.67 4.00
419 420 0.977395 GCAGGAGACCACTACCAACT 59.023 55.000 0.00 0.00 0.00 3.16
421 422 2.613223 GCAGGAGACCACTACCAACTTC 60.613 54.545 0.00 0.00 0.00 3.01
427 428 3.579151 AGACCACTACCAACTTCTCCTTC 59.421 47.826 0.00 0.00 0.00 3.46
428 429 2.638363 ACCACTACCAACTTCTCCTTCC 59.362 50.000 0.00 0.00 0.00 3.46
436 437 2.036731 TTCTCCTTCCGGCTCCGA 59.963 61.111 10.28 0.00 42.83 4.55
438 439 4.194720 CTCCTTCCGGCTCCGACG 62.195 72.222 10.28 0.00 42.83 5.12
505 507 2.017559 ATGGACGCGAACTAGGAGGC 62.018 60.000 15.93 0.00 0.00 4.70
510 512 4.222847 CGAACTAGGAGGCGGGGC 62.223 72.222 0.00 0.00 0.00 5.80
542 551 2.123726 GGATGGGCGGGCTTTCAT 60.124 61.111 0.26 0.00 0.00 2.57
543 552 1.758122 GGATGGGCGGGCTTTCATT 60.758 57.895 0.26 0.00 0.00 2.57
544 553 1.329913 GGATGGGCGGGCTTTCATTT 61.330 55.000 0.26 0.00 0.00 2.32
545 554 0.179103 GATGGGCGGGCTTTCATTTG 60.179 55.000 0.26 0.00 0.00 2.32
551 560 2.480037 GGCGGGCTTTCATTTGAAAAAG 59.520 45.455 7.13 0.00 42.72 2.27
554 563 3.494251 CGGGCTTTCATTTGAAAAAGTGG 59.506 43.478 7.13 0.00 42.72 4.00
555 564 3.250762 GGGCTTTCATTTGAAAAAGTGGC 59.749 43.478 7.13 7.38 42.72 5.01
558 567 5.265477 GCTTTCATTTGAAAAAGTGGCAAC 58.735 37.500 7.13 0.00 42.72 4.17
559 568 5.065090 GCTTTCATTTGAAAAAGTGGCAACT 59.935 36.000 7.13 0.00 42.72 3.16
560 569 6.419980 TTTCATTTGAAAAAGTGGCAACTG 57.580 33.333 0.00 0.00 40.68 3.16
561 570 5.083533 TCATTTGAAAAAGTGGCAACTGT 57.916 34.783 0.00 0.00 36.51 3.55
562 571 5.108517 TCATTTGAAAAAGTGGCAACTGTC 58.891 37.500 0.00 0.00 36.51 3.51
563 572 3.518634 TTGAAAAAGTGGCAACTGTCC 57.481 42.857 0.00 0.00 36.51 4.02
564 573 2.451490 TGAAAAAGTGGCAACTGTCCA 58.549 42.857 0.00 0.00 36.51 4.02
565 574 2.828520 TGAAAAAGTGGCAACTGTCCAA 59.171 40.909 0.00 0.00 36.51 3.53
566 575 3.259374 TGAAAAAGTGGCAACTGTCCAAA 59.741 39.130 0.00 0.00 36.51 3.28
567 576 4.081198 TGAAAAAGTGGCAACTGTCCAAAT 60.081 37.500 0.00 0.00 36.51 2.32
568 577 3.457610 AAAGTGGCAACTGTCCAAATG 57.542 42.857 0.00 0.00 36.51 2.32
569 578 2.071778 AGTGGCAACTGTCCAAATGT 57.928 45.000 0.00 0.00 34.48 2.71
570 579 1.682854 AGTGGCAACTGTCCAAATGTG 59.317 47.619 0.00 0.00 34.48 3.21
571 580 0.388659 TGGCAACTGTCCAAATGTGC 59.611 50.000 0.00 0.00 37.61 4.57
572 581 0.664166 GGCAACTGTCCAAATGTGCG 60.664 55.000 0.00 0.00 0.00 5.34
573 582 0.310543 GCAACTGTCCAAATGTGCGA 59.689 50.000 0.00 0.00 0.00 5.10
574 583 1.664016 GCAACTGTCCAAATGTGCGAG 60.664 52.381 0.00 0.00 0.00 5.03
575 584 0.593128 AACTGTCCAAATGTGCGAGC 59.407 50.000 0.00 0.00 0.00 5.03
576 585 0.250467 ACTGTCCAAATGTGCGAGCT 60.250 50.000 0.00 0.00 0.00 4.09
577 586 0.877071 CTGTCCAAATGTGCGAGCTT 59.123 50.000 0.00 0.00 0.00 3.74
578 587 0.874390 TGTCCAAATGTGCGAGCTTC 59.126 50.000 0.00 0.00 0.00 3.86
579 588 0.874390 GTCCAAATGTGCGAGCTTCA 59.126 50.000 0.00 0.00 0.00 3.02
580 589 0.874390 TCCAAATGTGCGAGCTTCAC 59.126 50.000 11.70 11.70 35.14 3.18
581 590 0.109597 CCAAATGTGCGAGCTTCACC 60.110 55.000 14.82 1.81 33.71 4.02
582 591 0.877071 CAAATGTGCGAGCTTCACCT 59.123 50.000 14.82 5.19 33.71 4.00
583 592 1.135859 CAAATGTGCGAGCTTCACCTC 60.136 52.381 14.82 0.00 33.71 3.85
592 601 1.131315 GAGCTTCACCTCGATTTTGGC 59.869 52.381 0.00 0.00 0.00 4.52
593 602 1.168714 GCTTCACCTCGATTTTGGCT 58.831 50.000 0.00 0.00 0.00 4.75
594 603 1.135575 GCTTCACCTCGATTTTGGCTG 60.136 52.381 0.00 0.00 0.00 4.85
595 604 2.154462 CTTCACCTCGATTTTGGCTGT 58.846 47.619 0.00 0.00 0.00 4.40
596 605 1.522668 TCACCTCGATTTTGGCTGTG 58.477 50.000 0.00 0.00 0.00 3.66
597 606 1.202758 TCACCTCGATTTTGGCTGTGT 60.203 47.619 0.00 0.00 0.00 3.72
598 607 1.197721 CACCTCGATTTTGGCTGTGTC 59.802 52.381 0.00 0.00 0.00 3.67
599 608 0.804989 CCTCGATTTTGGCTGTGTCC 59.195 55.000 0.00 0.00 0.00 4.02
600 609 0.443869 CTCGATTTTGGCTGTGTCCG 59.556 55.000 0.00 0.00 0.00 4.79
601 610 1.154225 CGATTTTGGCTGTGTCCGC 60.154 57.895 0.00 0.00 0.00 5.54
602 611 1.154225 GATTTTGGCTGTGTCCGCG 60.154 57.895 0.00 0.00 0.00 6.46
603 612 3.267597 ATTTTGGCTGTGTCCGCGC 62.268 57.895 0.00 0.00 0.00 6.86
604 613 4.927782 TTTGGCTGTGTCCGCGCT 62.928 61.111 5.56 0.00 0.00 5.92
609 618 4.662961 CTGTGTCCGCGCTGTGGA 62.663 66.667 5.56 1.15 40.17 4.02
610 619 4.228567 TGTGTCCGCGCTGTGGAA 62.229 61.111 5.56 0.00 44.24 3.53
611 620 3.712881 GTGTCCGCGCTGTGGAAC 61.713 66.667 5.56 2.97 44.24 3.62
618 627 2.048597 CGCTGTGGAACGCCTACA 60.049 61.111 0.00 0.00 42.39 2.74
619 628 1.447838 CGCTGTGGAACGCCTACAT 60.448 57.895 0.00 0.00 42.39 2.29
620 629 1.695893 CGCTGTGGAACGCCTACATG 61.696 60.000 0.00 0.00 42.39 3.21
621 630 0.391130 GCTGTGGAACGCCTACATGA 60.391 55.000 0.00 0.00 42.39 3.07
622 631 1.743772 GCTGTGGAACGCCTACATGAT 60.744 52.381 0.00 0.00 42.39 2.45
623 632 1.935873 CTGTGGAACGCCTACATGATG 59.064 52.381 0.00 0.00 42.39 3.07
624 633 1.299541 GTGGAACGCCTACATGATGG 58.700 55.000 0.00 1.64 34.31 3.51
625 634 0.463654 TGGAACGCCTACATGATGGC 60.464 55.000 18.88 18.88 45.25 4.40
626 635 0.179045 GGAACGCCTACATGATGGCT 60.179 55.000 23.45 11.68 46.42 4.75
627 636 0.940126 GAACGCCTACATGATGGCTG 59.060 55.000 23.45 19.65 46.42 4.85
628 637 0.253044 AACGCCTACATGATGGCTGT 59.747 50.000 23.45 20.09 46.42 4.40
629 638 0.179073 ACGCCTACATGATGGCTGTC 60.179 55.000 23.45 4.08 46.42 3.51
630 639 0.882042 CGCCTACATGATGGCTGTCC 60.882 60.000 23.45 3.81 46.42 4.02
631 640 0.882042 GCCTACATGATGGCTGTCCG 60.882 60.000 20.64 0.00 45.26 4.79
632 641 0.250038 CCTACATGATGGCTGTCCGG 60.250 60.000 0.00 0.00 34.14 5.14
633 642 0.752658 CTACATGATGGCTGTCCGGA 59.247 55.000 0.00 0.00 34.14 5.14
634 643 0.464036 TACATGATGGCTGTCCGGAC 59.536 55.000 28.17 28.17 34.14 4.79
635 644 1.884464 CATGATGGCTGTCCGGACG 60.884 63.158 28.70 22.93 34.14 4.79
636 645 3.094062 ATGATGGCTGTCCGGACGG 62.094 63.158 34.82 34.82 40.59 4.79
654 663 4.016706 CCGCAAACCTCCCTCGGT 62.017 66.667 0.00 0.00 39.48 4.69
661 670 2.447408 AACCTCCCTCGGTTTTGTTT 57.553 45.000 0.00 0.00 44.65 2.83
662 671 1.977056 ACCTCCCTCGGTTTTGTTTC 58.023 50.000 0.00 0.00 31.94 2.78
663 672 1.493446 ACCTCCCTCGGTTTTGTTTCT 59.507 47.619 0.00 0.00 31.94 2.52
664 673 1.880027 CCTCCCTCGGTTTTGTTTCTG 59.120 52.381 0.00 0.00 0.00 3.02
665 674 1.880027 CTCCCTCGGTTTTGTTTCTGG 59.120 52.381 0.00 0.00 0.00 3.86
666 675 1.213430 TCCCTCGGTTTTGTTTCTGGT 59.787 47.619 0.00 0.00 0.00 4.00
667 676 2.028876 CCCTCGGTTTTGTTTCTGGTT 58.971 47.619 0.00 0.00 0.00 3.67
668 677 2.429250 CCCTCGGTTTTGTTTCTGGTTT 59.571 45.455 0.00 0.00 0.00 3.27
669 678 3.443976 CCTCGGTTTTGTTTCTGGTTTG 58.556 45.455 0.00 0.00 0.00 2.93
670 679 2.857748 CTCGGTTTTGTTTCTGGTTTGC 59.142 45.455 0.00 0.00 0.00 3.68
671 680 1.586123 CGGTTTTGTTTCTGGTTTGCG 59.414 47.619 0.00 0.00 0.00 4.85
672 681 1.930503 GGTTTTGTTTCTGGTTTGCGG 59.069 47.619 0.00 0.00 0.00 5.69
673 682 1.930503 GTTTTGTTTCTGGTTTGCGGG 59.069 47.619 0.00 0.00 0.00 6.13
674 683 1.475403 TTTGTTTCTGGTTTGCGGGA 58.525 45.000 0.00 0.00 0.00 5.14
675 684 1.475403 TTGTTTCTGGTTTGCGGGAA 58.525 45.000 0.00 0.00 0.00 3.97
676 685 1.028905 TGTTTCTGGTTTGCGGGAAG 58.971 50.000 0.00 0.00 0.00 3.46
677 686 1.314730 GTTTCTGGTTTGCGGGAAGA 58.685 50.000 0.00 0.00 0.00 2.87
678 687 1.679153 GTTTCTGGTTTGCGGGAAGAA 59.321 47.619 0.00 0.00 0.00 2.52
679 688 2.286365 TTCTGGTTTGCGGGAAGAAT 57.714 45.000 0.00 0.00 0.00 2.40
680 689 2.286365 TCTGGTTTGCGGGAAGAATT 57.714 45.000 0.00 0.00 0.00 2.17
681 690 2.593026 TCTGGTTTGCGGGAAGAATTT 58.407 42.857 0.00 0.00 0.00 1.82
682 691 2.295909 TCTGGTTTGCGGGAAGAATTTG 59.704 45.455 0.00 0.00 0.00 2.32
683 692 2.295909 CTGGTTTGCGGGAAGAATTTGA 59.704 45.455 0.00 0.00 0.00 2.69
684 693 2.695666 TGGTTTGCGGGAAGAATTTGAA 59.304 40.909 0.00 0.00 0.00 2.69
685 694 3.057019 GGTTTGCGGGAAGAATTTGAAC 58.943 45.455 0.00 0.00 0.00 3.18
686 695 2.697431 TTGCGGGAAGAATTTGAACG 57.303 45.000 0.00 0.00 0.00 3.95
687 696 1.600023 TGCGGGAAGAATTTGAACGT 58.400 45.000 0.00 0.00 0.00 3.99
688 697 1.265635 TGCGGGAAGAATTTGAACGTG 59.734 47.619 0.00 0.00 0.00 4.49
689 698 1.963747 CGGGAAGAATTTGAACGTGC 58.036 50.000 0.00 0.00 0.00 5.34
690 699 1.724654 CGGGAAGAATTTGAACGTGCG 60.725 52.381 0.00 0.00 0.00 5.34
691 700 1.401018 GGGAAGAATTTGAACGTGCGG 60.401 52.381 0.00 0.00 0.00 5.69
692 701 1.533731 GGAAGAATTTGAACGTGCGGA 59.466 47.619 0.00 0.00 0.00 5.54
693 702 2.161609 GGAAGAATTTGAACGTGCGGAT 59.838 45.455 0.00 0.00 0.00 4.18
694 703 3.417185 GAAGAATTTGAACGTGCGGATC 58.583 45.455 0.00 0.00 0.00 3.36
695 704 1.393539 AGAATTTGAACGTGCGGATCG 59.606 47.619 0.00 0.00 0.00 3.69
696 705 1.127951 GAATTTGAACGTGCGGATCGT 59.872 47.619 0.00 0.00 43.45 3.73
700 709 4.347096 AACGTGCGGATCGTTTGA 57.653 50.000 10.42 0.00 46.90 2.69
701 710 2.150424 AACGTGCGGATCGTTTGAG 58.850 52.632 10.42 0.00 46.90 3.02
702 711 1.289109 AACGTGCGGATCGTTTGAGG 61.289 55.000 10.42 0.00 46.90 3.86
703 712 2.452813 CGTGCGGATCGTTTGAGGG 61.453 63.158 0.00 0.00 0.00 4.30
704 713 2.435938 TGCGGATCGTTTGAGGGC 60.436 61.111 0.00 0.00 0.00 5.19
705 714 3.564027 GCGGATCGTTTGAGGGCG 61.564 66.667 0.00 0.00 0.00 6.13
706 715 2.125673 CGGATCGTTTGAGGGCGT 60.126 61.111 0.00 0.00 0.00 5.68
707 716 1.740296 CGGATCGTTTGAGGGCGTT 60.740 57.895 0.00 0.00 0.00 4.84
708 717 1.794222 GGATCGTTTGAGGGCGTTG 59.206 57.895 0.00 0.00 0.00 4.10
709 718 1.644786 GGATCGTTTGAGGGCGTTGG 61.645 60.000 0.00 0.00 0.00 3.77
710 719 0.672401 GATCGTTTGAGGGCGTTGGA 60.672 55.000 0.00 0.00 0.00 3.53
711 720 0.035439 ATCGTTTGAGGGCGTTGGAT 60.035 50.000 0.00 0.00 0.00 3.41
712 721 0.953471 TCGTTTGAGGGCGTTGGATG 60.953 55.000 0.00 0.00 0.00 3.51
713 722 1.212751 GTTTGAGGGCGTTGGATGC 59.787 57.895 0.00 0.00 0.00 3.91
714 723 1.228398 TTTGAGGGCGTTGGATGCA 60.228 52.632 0.00 0.00 0.00 3.96
715 724 0.611618 TTTGAGGGCGTTGGATGCAT 60.612 50.000 0.00 0.00 0.00 3.96
716 725 1.314534 TTGAGGGCGTTGGATGCATG 61.315 55.000 2.46 0.00 0.00 4.06
717 726 1.451927 GAGGGCGTTGGATGCATGA 60.452 57.895 2.46 0.00 0.00 3.07
718 727 1.718757 GAGGGCGTTGGATGCATGAC 61.719 60.000 2.46 0.00 0.00 3.06
719 728 2.045708 GGGCGTTGGATGCATGACA 61.046 57.895 2.46 0.00 0.00 3.58
720 729 1.137404 GGCGTTGGATGCATGACAC 59.863 57.895 2.46 0.00 0.00 3.67
721 730 1.308069 GGCGTTGGATGCATGACACT 61.308 55.000 2.46 0.00 0.00 3.55
722 731 1.368641 GCGTTGGATGCATGACACTA 58.631 50.000 2.46 0.00 0.00 2.74
723 732 1.737236 GCGTTGGATGCATGACACTAA 59.263 47.619 2.46 0.00 0.00 2.24
724 733 2.161410 GCGTTGGATGCATGACACTAAA 59.839 45.455 2.46 0.00 0.00 1.85
725 734 3.181497 GCGTTGGATGCATGACACTAAAT 60.181 43.478 2.46 0.00 0.00 1.40
726 735 4.345288 CGTTGGATGCATGACACTAAATG 58.655 43.478 2.46 0.00 0.00 2.32
727 736 4.094739 CGTTGGATGCATGACACTAAATGA 59.905 41.667 2.46 0.00 0.00 2.57
728 737 5.335127 GTTGGATGCATGACACTAAATGAC 58.665 41.667 2.46 0.00 0.00 3.06
729 738 3.947196 TGGATGCATGACACTAAATGACC 59.053 43.478 2.46 0.00 0.00 4.02
730 739 3.316308 GGATGCATGACACTAAATGACCC 59.684 47.826 2.46 0.00 0.00 4.46
731 740 3.431673 TGCATGACACTAAATGACCCA 57.568 42.857 0.00 0.00 0.00 4.51
732 741 3.760738 TGCATGACACTAAATGACCCAA 58.239 40.909 0.00 0.00 0.00 4.12
733 742 4.148079 TGCATGACACTAAATGACCCAAA 58.852 39.130 0.00 0.00 0.00 3.28
734 743 4.586421 TGCATGACACTAAATGACCCAAAA 59.414 37.500 0.00 0.00 0.00 2.44
735 744 5.245751 TGCATGACACTAAATGACCCAAAAT 59.754 36.000 0.00 0.00 0.00 1.82
736 745 6.435591 TGCATGACACTAAATGACCCAAAATA 59.564 34.615 0.00 0.00 0.00 1.40
737 746 7.123997 TGCATGACACTAAATGACCCAAAATAT 59.876 33.333 0.00 0.00 0.00 1.28
738 747 8.629158 GCATGACACTAAATGACCCAAAATATA 58.371 33.333 0.00 0.00 0.00 0.86
743 752 9.936329 ACACTAAATGACCCAAAATATATTCCT 57.064 29.630 0.00 0.00 0.00 3.36
746 755 9.696917 CTAAATGACCCAAAATATATTCCTTGC 57.303 33.333 0.00 0.00 0.00 4.01
747 756 7.673641 AATGACCCAAAATATATTCCTTGCA 57.326 32.000 0.00 0.00 0.00 4.08
748 757 7.673641 ATGACCCAAAATATATTCCTTGCAA 57.326 32.000 0.00 0.00 0.00 4.08
749 758 6.872920 TGACCCAAAATATATTCCTTGCAAC 58.127 36.000 0.00 0.00 0.00 4.17
750 759 6.127196 TGACCCAAAATATATTCCTTGCAACC 60.127 38.462 0.00 0.00 0.00 3.77
751 760 5.130311 ACCCAAAATATATTCCTTGCAACCC 59.870 40.000 0.00 0.00 0.00 4.11
752 761 5.130145 CCCAAAATATATTCCTTGCAACCCA 59.870 40.000 0.00 0.00 0.00 4.51
753 762 6.352565 CCCAAAATATATTCCTTGCAACCCAA 60.353 38.462 0.00 0.00 0.00 4.12
754 763 7.108847 CCAAAATATATTCCTTGCAACCCAAA 58.891 34.615 0.00 0.00 31.94 3.28
755 764 7.609532 CCAAAATATATTCCTTGCAACCCAAAA 59.390 33.333 0.00 0.00 31.94 2.44
756 765 9.007901 CAAAATATATTCCTTGCAACCCAAAAA 57.992 29.630 0.00 0.00 31.94 1.94
785 794 8.703378 AAAAAGAATGGCCCAAAATTTATGAA 57.297 26.923 0.00 0.00 0.00 2.57
786 795 7.686438 AAAGAATGGCCCAAAATTTATGAAC 57.314 32.000 0.00 0.00 0.00 3.18
787 796 5.418676 AGAATGGCCCAAAATTTATGAACG 58.581 37.500 0.00 0.00 0.00 3.95
788 797 4.817318 ATGGCCCAAAATTTATGAACGT 57.183 36.364 0.00 0.00 0.00 3.99
789 798 4.608948 TGGCCCAAAATTTATGAACGTT 57.391 36.364 0.00 0.00 0.00 3.99
790 799 4.561105 TGGCCCAAAATTTATGAACGTTC 58.439 39.130 21.42 21.42 0.00 3.95
791 800 4.039245 TGGCCCAAAATTTATGAACGTTCA 59.961 37.500 31.41 31.41 42.14 3.18
792 801 4.991687 GGCCCAAAATTTATGAACGTTCAA 59.008 37.500 32.69 18.47 41.13 2.69
793 802 5.120053 GGCCCAAAATTTATGAACGTTCAAG 59.880 40.000 32.69 15.07 41.13 3.02
794 803 5.694458 GCCCAAAATTTATGAACGTTCAAGT 59.306 36.000 32.69 20.63 41.13 3.16
795 804 6.346518 GCCCAAAATTTATGAACGTTCAAGTG 60.347 38.462 32.69 20.42 41.13 3.16
796 805 6.346518 CCCAAAATTTATGAACGTTCAAGTGC 60.347 38.462 32.69 5.23 41.13 4.40
797 806 6.420604 CCAAAATTTATGAACGTTCAAGTGCT 59.579 34.615 32.69 19.20 41.13 4.40
798 807 6.991485 AAATTTATGAACGTTCAAGTGCTG 57.009 33.333 32.69 0.00 41.13 4.41
799 808 3.536158 TTATGAACGTTCAAGTGCTGC 57.464 42.857 32.69 2.89 41.13 5.25
800 809 1.597742 ATGAACGTTCAAGTGCTGCT 58.402 45.000 32.69 12.69 41.13 4.24
801 810 0.657312 TGAACGTTCAAGTGCTGCTG 59.343 50.000 27.94 0.00 33.55 4.41
1039 1048 2.976840 GCGCCATTTTGCTCCGACA 61.977 57.895 0.00 0.00 0.00 4.35
1061 1070 1.526917 GTCCCAATCCAGCCCGATG 60.527 63.158 0.00 0.00 0.00 3.84
2034 2064 2.182030 GTCAAGCCCGACCTCTCG 59.818 66.667 0.00 0.00 39.83 4.04
2409 3735 1.517832 CGTCCTGTCCATCTGGGTC 59.482 63.158 0.00 0.00 38.11 4.46
2508 3843 2.261361 CAGACGATGGTGGTCGCA 59.739 61.111 0.00 0.00 45.12 5.10
2616 3951 3.397613 GAAGATCCTGGCCAGCGCT 62.398 63.158 28.39 19.43 34.44 5.92
2705 4040 2.903855 GCACAGGGCGATGATGGG 60.904 66.667 0.00 0.00 0.00 4.00
2706 4041 2.903855 CACAGGGCGATGATGGGC 60.904 66.667 0.00 0.00 0.00 5.36
2765 4100 1.201647 GGTGTTCGACGAGATGAGGAA 59.798 52.381 0.00 0.00 0.00 3.36
3036 4371 2.325166 GGCGTCTACGAGAGAGCG 59.675 66.667 6.71 0.02 43.02 5.03
3048 4383 2.159366 CGAGAGAGCGTACAGGTTTGAT 60.159 50.000 0.00 0.00 0.00 2.57
3086 4421 2.565391 TCAGCCAGATACGAAGTTCCAA 59.435 45.455 0.00 0.00 37.78 3.53
3087 4422 3.197766 TCAGCCAGATACGAAGTTCCAAT 59.802 43.478 0.00 0.00 37.78 3.16
3116 4451 3.427638 CGCGTCCAGAAACTCAGATAAGA 60.428 47.826 0.00 0.00 0.00 2.10
3117 4452 4.495422 GCGTCCAGAAACTCAGATAAGAA 58.505 43.478 0.00 0.00 0.00 2.52
3118 4453 4.564769 GCGTCCAGAAACTCAGATAAGAAG 59.435 45.833 0.00 0.00 0.00 2.85
3119 4454 4.564769 CGTCCAGAAACTCAGATAAGAAGC 59.435 45.833 0.00 0.00 0.00 3.86
3120 4455 5.623368 CGTCCAGAAACTCAGATAAGAAGCT 60.623 44.000 0.00 0.00 0.00 3.74
3121 4456 6.169800 GTCCAGAAACTCAGATAAGAAGCTT 58.830 40.000 0.00 0.00 0.00 3.74
3122 4457 6.091986 GTCCAGAAACTCAGATAAGAAGCTTG 59.908 42.308 2.10 0.00 0.00 4.01
3123 4458 5.936956 CCAGAAACTCAGATAAGAAGCTTGT 59.063 40.000 2.10 0.00 0.00 3.16
3124 4459 7.039011 TCCAGAAACTCAGATAAGAAGCTTGTA 60.039 37.037 2.10 0.00 0.00 2.41
3125 4460 7.604164 CCAGAAACTCAGATAAGAAGCTTGTAA 59.396 37.037 2.10 0.00 0.00 2.41
3126 4461 8.993121 CAGAAACTCAGATAAGAAGCTTGTAAA 58.007 33.333 2.10 0.00 0.00 2.01
3127 4462 9.732130 AGAAACTCAGATAAGAAGCTTGTAAAT 57.268 29.630 2.10 0.00 0.00 1.40
3143 4478 9.650539 AGCTTGTAAATATCACTATATCAGCTG 57.349 33.333 7.63 7.63 0.00 4.24
3144 4479 8.877779 GCTTGTAAATATCACTATATCAGCTGG 58.122 37.037 15.13 0.00 0.00 4.85
3145 4480 9.935241 CTTGTAAATATCACTATATCAGCTGGT 57.065 33.333 15.13 9.93 0.00 4.00
3162 4497 9.632638 ATCAGCTGGTTAGATTTATAAACACAT 57.367 29.630 15.13 0.00 29.48 3.21
3163 4498 8.892723 TCAGCTGGTTAGATTTATAAACACATG 58.107 33.333 15.13 0.00 29.48 3.21
3164 4499 8.892723 CAGCTGGTTAGATTTATAAACACATGA 58.107 33.333 5.57 0.00 29.48 3.07
3165 4500 9.632638 AGCTGGTTAGATTTATAAACACATGAT 57.367 29.630 0.00 0.00 29.48 2.45
3179 4514 9.723601 ATAAACACATGATTTTGGTAAAATGCT 57.276 25.926 0.00 0.00 40.97 3.79
3180 4515 7.424227 AACACATGATTTTGGTAAAATGCTG 57.576 32.000 0.00 4.71 40.97 4.41
3181 4516 5.933463 ACACATGATTTTGGTAAAATGCTGG 59.067 36.000 0.00 1.01 40.97 4.85
3182 4517 5.933463 CACATGATTTTGGTAAAATGCTGGT 59.067 36.000 0.00 0.00 40.97 4.00
3183 4518 7.095910 CACATGATTTTGGTAAAATGCTGGTA 58.904 34.615 0.00 0.00 40.97 3.25
3184 4519 7.601886 CACATGATTTTGGTAAAATGCTGGTAA 59.398 33.333 0.00 0.00 40.97 2.85
3185 4520 7.602265 ACATGATTTTGGTAAAATGCTGGTAAC 59.398 33.333 0.00 0.00 40.97 2.50
3186 4521 7.055667 TGATTTTGGTAAAATGCTGGTAACA 57.944 32.000 4.42 0.00 42.60 2.41
3187 4522 7.675062 TGATTTTGGTAAAATGCTGGTAACAT 58.325 30.769 4.42 0.00 43.36 2.71
3188 4523 8.153550 TGATTTTGGTAAAATGCTGGTAACATT 58.846 29.630 4.42 0.00 43.36 2.71
3189 4524 8.546597 ATTTTGGTAAAATGCTGGTAACATTC 57.453 30.769 0.00 0.00 42.37 2.67
3190 4525 7.606073 ATTTTGGTAAAATGCTGGTAACATTCC 59.394 33.333 0.00 0.00 42.37 3.01
3201 4536 5.054390 TGGTAACATTCCTCGATTTTTGC 57.946 39.130 0.00 0.00 46.17 3.68
3202 4537 4.520874 TGGTAACATTCCTCGATTTTTGCA 59.479 37.500 0.00 0.00 46.17 4.08
3203 4538 5.184864 TGGTAACATTCCTCGATTTTTGCAT 59.815 36.000 0.00 0.00 46.17 3.96
3204 4539 5.743872 GGTAACATTCCTCGATTTTTGCATC 59.256 40.000 0.00 0.00 0.00 3.91
3205 4540 4.376340 ACATTCCTCGATTTTTGCATCC 57.624 40.909 0.00 0.00 0.00 3.51
3206 4541 3.763360 ACATTCCTCGATTTTTGCATCCA 59.237 39.130 0.00 0.00 0.00 3.41
3207 4542 4.142315 ACATTCCTCGATTTTTGCATCCAG 60.142 41.667 0.00 0.00 0.00 3.86
3208 4543 3.348647 TCCTCGATTTTTGCATCCAGA 57.651 42.857 0.00 0.00 0.00 3.86
3209 4544 3.684908 TCCTCGATTTTTGCATCCAGAA 58.315 40.909 0.00 0.00 0.00 3.02
3210 4545 4.078537 TCCTCGATTTTTGCATCCAGAAA 58.921 39.130 0.00 0.00 30.77 2.52
3211 4546 4.082787 TCCTCGATTTTTGCATCCAGAAAC 60.083 41.667 0.00 0.00 29.19 2.78
3212 4547 4.082571 CCTCGATTTTTGCATCCAGAAACT 60.083 41.667 0.00 0.00 29.19 2.66
3213 4548 5.046910 TCGATTTTTGCATCCAGAAACTC 57.953 39.130 0.00 0.00 29.19 3.01
3214 4549 4.518590 TCGATTTTTGCATCCAGAAACTCA 59.481 37.500 0.00 0.00 29.19 3.41
3215 4550 5.009510 TCGATTTTTGCATCCAGAAACTCAA 59.990 36.000 0.00 0.00 29.19 3.02
3216 4551 5.691305 CGATTTTTGCATCCAGAAACTCAAA 59.309 36.000 0.00 0.00 29.19 2.69
3217 4552 6.366877 CGATTTTTGCATCCAGAAACTCAAAT 59.633 34.615 0.00 0.00 29.19 2.32
3231 4566 8.993121 CAGAAACTCAAATAAGAAGCTTCAGTA 58.007 33.333 27.57 18.65 0.00 2.74
3236 4571 7.038658 ACTCAAATAAGAAGCTTCAGTACCTCT 60.039 37.037 27.57 1.49 0.00 3.69
3238 4573 8.812972 TCAAATAAGAAGCTTCAGTACCTCTTA 58.187 33.333 27.57 14.73 0.00 2.10
3242 4577 6.215495 AGAAGCTTCAGTACCTCTTATCAC 57.785 41.667 27.57 0.00 0.00 3.06
3252 4587 3.018149 ACCTCTTATCACGTCCAGAGTC 58.982 50.000 8.33 0.00 32.31 3.36
3256 4591 2.801077 TATCACGTCCAGAGTCCAGA 57.199 50.000 0.00 0.00 0.00 3.86
3258 4593 0.179001 TCACGTCCAGAGTCCAGACA 60.179 55.000 9.98 0.00 0.00 3.41
3285 4620 6.628185 AGAGATTCTGACAAAATTGGAATGC 58.372 36.000 0.00 0.00 0.00 3.56
3300 4636 3.261390 TGGAATGCCAGCAAGCTTAAAAT 59.739 39.130 0.00 0.00 39.92 1.82
3301 4637 3.867493 GGAATGCCAGCAAGCTTAAAATC 59.133 43.478 0.00 0.00 0.00 2.17
3303 4639 2.246469 TGCCAGCAAGCTTAAAATCCA 58.754 42.857 0.00 0.00 0.00 3.41
3304 4640 2.231964 TGCCAGCAAGCTTAAAATCCAG 59.768 45.455 0.00 0.00 0.00 3.86
3313 4649 4.985538 AGCTTAAAATCCAGGTCTTGTGA 58.014 39.130 0.00 0.00 0.00 3.58
3315 4651 4.762251 GCTTAAAATCCAGGTCTTGTGACT 59.238 41.667 0.00 0.00 42.54 3.41
3317 4653 6.633500 TTAAAATCCAGGTCTTGTGACTTG 57.367 37.500 2.00 2.00 46.03 3.16
3318 4654 3.864789 AATCCAGGTCTTGTGACTTGT 57.135 42.857 7.35 0.00 45.31 3.16
3319 4655 4.974645 AATCCAGGTCTTGTGACTTGTA 57.025 40.909 7.35 0.00 45.31 2.41
3320 4656 4.974645 ATCCAGGTCTTGTGACTTGTAA 57.025 40.909 7.35 0.00 45.31 2.41
3321 4657 4.764050 TCCAGGTCTTGTGACTTGTAAA 57.236 40.909 7.35 0.00 45.31 2.01
3322 4658 5.304686 TCCAGGTCTTGTGACTTGTAAAT 57.695 39.130 7.35 0.00 45.31 1.40
3325 4661 5.049405 CCAGGTCTTGTGACTTGTAAATGTC 60.049 44.000 7.35 0.00 45.31 3.06
3327 4663 5.760253 AGGTCTTGTGACTTGTAAATGTCAG 59.240 40.000 1.92 0.00 42.84 3.51
3328 4664 5.444122 GTCTTGTGACTTGTAAATGTCAGC 58.556 41.667 1.92 0.00 42.84 4.26
3329 4665 5.007626 GTCTTGTGACTTGTAAATGTCAGCA 59.992 40.000 1.92 2.12 42.84 4.41
3331 4667 5.422666 TGTGACTTGTAAATGTCAGCAAG 57.577 39.130 1.92 0.00 42.84 4.01
3332 4668 4.222114 GTGACTTGTAAATGTCAGCAAGC 58.778 43.478 1.92 0.00 42.84 4.01
3346 4708 9.565090 AATGTCAGCAAGCTTAAATATCAGATA 57.435 29.630 0.00 0.00 0.00 1.98
3375 4737 6.745450 AGATTTATAAACACACGATTTTGGCG 59.255 34.615 0.00 0.00 0.00 5.69
3385 4747 2.288152 ACGATTTTGGCGAAAATGCTGT 60.288 40.909 22.08 14.63 41.06 4.40
3398 4760 5.348451 CGAAAATGCTGTTAAAATTCCCTGG 59.652 40.000 0.00 0.00 0.00 4.45
3403 4765 4.280677 TGCTGTTAAAATTCCCTGGACAAG 59.719 41.667 0.00 0.00 0.00 3.16
3407 4769 7.189079 TGTTAAAATTCCCTGGACAAGTTTT 57.811 32.000 8.43 5.93 0.00 2.43
3438 4806 9.914923 GTTTGTGAATTTTACCAAACATTTCTC 57.085 29.630 8.71 0.00 43.70 2.87
3457 4825 9.748708 CATTTCTCACTGAAACCTTGATTAAAA 57.251 29.630 0.00 0.00 46.08 1.52
3482 4854 1.746470 TGCAGCCTCTTGACATCATG 58.254 50.000 0.00 0.00 0.00 3.07
3483 4855 1.279846 TGCAGCCTCTTGACATCATGA 59.720 47.619 0.00 0.00 0.00 3.07
3484 4856 2.092592 TGCAGCCTCTTGACATCATGAT 60.093 45.455 1.18 1.18 31.01 2.45
3485 4857 3.135167 TGCAGCCTCTTGACATCATGATA 59.865 43.478 8.15 0.00 31.01 2.15
3718 5094 1.972588 ACAAGTGCTCTCCCCCTAAT 58.027 50.000 0.00 0.00 0.00 1.73
3719 5095 3.130734 ACAAGTGCTCTCCCCCTAATA 57.869 47.619 0.00 0.00 0.00 0.98
3720 5096 3.460825 ACAAGTGCTCTCCCCCTAATAA 58.539 45.455 0.00 0.00 0.00 1.40
4030 5463 3.304928 GTCCAGCTGAAAATGGAACACAG 60.305 47.826 17.39 0.00 46.87 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.512903 GCAGTGATAAACATGATCCATGACAG 60.513 42.308 13.22 0.00 43.81 3.51
1 2 5.297527 GCAGTGATAAACATGATCCATGACA 59.702 40.000 13.22 0.00 43.81 3.58
2 3 5.297527 TGCAGTGATAAACATGATCCATGAC 59.702 40.000 13.22 1.03 43.81 3.06
3 4 5.438833 TGCAGTGATAAACATGATCCATGA 58.561 37.500 13.22 0.00 43.81 3.07
4 5 5.761165 TGCAGTGATAAACATGATCCATG 57.239 39.130 0.00 5.48 46.18 3.66
5 6 5.475909 GGATGCAGTGATAAACATGATCCAT 59.524 40.000 0.00 0.00 0.00 3.41
6 7 4.823442 GGATGCAGTGATAAACATGATCCA 59.177 41.667 0.00 0.00 0.00 3.41
7 8 4.217118 GGGATGCAGTGATAAACATGATCC 59.783 45.833 0.00 0.00 0.00 3.36
8 9 5.048921 CAGGGATGCAGTGATAAACATGATC 60.049 44.000 0.00 0.00 0.00 2.92
9 10 4.825634 CAGGGATGCAGTGATAAACATGAT 59.174 41.667 0.00 0.00 0.00 2.45
10 11 4.201657 CAGGGATGCAGTGATAAACATGA 58.798 43.478 0.00 0.00 0.00 3.07
11 12 3.949754 ACAGGGATGCAGTGATAAACATG 59.050 43.478 0.00 0.00 0.00 3.21
12 13 3.949754 CACAGGGATGCAGTGATAAACAT 59.050 43.478 3.44 0.00 35.33 2.71
13 14 3.008923 TCACAGGGATGCAGTGATAAACA 59.991 43.478 7.49 0.00 37.36 2.83
14 15 3.609853 TCACAGGGATGCAGTGATAAAC 58.390 45.455 7.49 0.00 37.36 2.01
15 16 3.998913 TCACAGGGATGCAGTGATAAA 57.001 42.857 7.49 0.00 37.36 1.40
16 17 3.264193 ACTTCACAGGGATGCAGTGATAA 59.736 43.478 11.45 0.00 41.42 1.75
17 18 2.840038 ACTTCACAGGGATGCAGTGATA 59.160 45.455 11.45 4.17 41.42 2.15
18 19 1.632409 ACTTCACAGGGATGCAGTGAT 59.368 47.619 11.45 0.00 41.42 3.06
19 20 1.002430 GACTTCACAGGGATGCAGTGA 59.998 52.381 7.49 7.49 40.24 3.41
20 21 1.271001 TGACTTCACAGGGATGCAGTG 60.271 52.381 0.00 3.17 34.67 3.66
21 22 1.059098 TGACTTCACAGGGATGCAGT 58.941 50.000 0.00 0.00 0.00 4.40
22 23 1.446907 GTGACTTCACAGGGATGCAG 58.553 55.000 4.43 0.00 45.75 4.41
23 24 3.631453 GTGACTTCACAGGGATGCA 57.369 52.632 4.43 0.00 45.75 3.96
32 33 2.026822 AGATGGTGGATGGTGACTTCAC 60.027 50.000 0.34 0.34 45.72 3.18
33 34 2.237143 GAGATGGTGGATGGTGACTTCA 59.763 50.000 0.00 0.00 36.27 3.02
34 35 2.739932 CGAGATGGTGGATGGTGACTTC 60.740 54.545 0.00 0.00 0.00 3.01
35 36 1.208052 CGAGATGGTGGATGGTGACTT 59.792 52.381 0.00 0.00 0.00 3.01
36 37 0.826715 CGAGATGGTGGATGGTGACT 59.173 55.000 0.00 0.00 0.00 3.41
37 38 0.811616 GCGAGATGGTGGATGGTGAC 60.812 60.000 0.00 0.00 0.00 3.67
38 39 1.522092 GCGAGATGGTGGATGGTGA 59.478 57.895 0.00 0.00 0.00 4.02
39 40 1.524621 GGCGAGATGGTGGATGGTG 60.525 63.158 0.00 0.00 0.00 4.17
40 41 2.746375 GGGCGAGATGGTGGATGGT 61.746 63.158 0.00 0.00 0.00 3.55
41 42 2.111878 GGGCGAGATGGTGGATGG 59.888 66.667 0.00 0.00 0.00 3.51
59 60 5.747565 TCTGTTTGCTAGAATGTTTCAACG 58.252 37.500 0.00 0.00 0.00 4.10
71 72 3.182967 GTGTCGGATCTCTGTTTGCTAG 58.817 50.000 0.00 0.00 0.00 3.42
72 73 2.094182 GGTGTCGGATCTCTGTTTGCTA 60.094 50.000 0.00 0.00 0.00 3.49
73 74 1.338200 GGTGTCGGATCTCTGTTTGCT 60.338 52.381 0.00 0.00 0.00 3.91
119 120 3.747976 GCCGGCGCTTGTCCATTT 61.748 61.111 12.58 0.00 0.00 2.32
131 132 4.789075 TTAGTCGCAGTCGCCGGC 62.789 66.667 19.07 19.07 35.26 6.13
145 146 5.091261 ACTACACCTTCATGGAGCTTTAG 57.909 43.478 0.00 0.00 33.31 1.85
147 148 3.584848 AGACTACACCTTCATGGAGCTTT 59.415 43.478 0.00 0.00 33.31 3.51
149 150 2.763448 GAGACTACACCTTCATGGAGCT 59.237 50.000 0.00 0.00 33.31 4.09
155 156 4.221703 CCTCAACTGAGACTACACCTTCAT 59.778 45.833 8.33 0.00 44.74 2.57
169 170 1.601166 TCGAAGTCGACCTCAACTGA 58.399 50.000 13.01 0.00 44.22 3.41
191 192 0.539986 ACCGACGGCCATCAAGTATT 59.460 50.000 15.39 0.00 0.00 1.89
206 207 0.907230 TCCATGTCCACCATCACCGA 60.907 55.000 0.00 0.00 0.00 4.69
207 208 0.744414 GTCCATGTCCACCATCACCG 60.744 60.000 0.00 0.00 0.00 4.94
220 221 0.729116 GTCCGCAACATCAGTCCATG 59.271 55.000 0.00 0.00 0.00 3.66
221 222 0.392998 GGTCCGCAACATCAGTCCAT 60.393 55.000 0.00 0.00 0.00 3.41
222 223 1.003839 GGTCCGCAACATCAGTCCA 60.004 57.895 0.00 0.00 0.00 4.02
224 225 1.078759 CTCGGTCCGCAACATCAGTC 61.079 60.000 6.34 0.00 0.00 3.51
226 227 2.456119 GCTCGGTCCGCAACATCAG 61.456 63.158 6.34 0.00 0.00 2.90
247 248 2.438434 GCAATCACCTCCACCCCG 60.438 66.667 0.00 0.00 0.00 5.73
248 249 1.039233 CATGCAATCACCTCCACCCC 61.039 60.000 0.00 0.00 0.00 4.95
252 253 2.371306 CATGTCATGCAATCACCTCCA 58.629 47.619 0.00 0.00 0.00 3.86
287 288 2.037136 CCTCCTCAGCCAAAGCGTG 61.037 63.158 0.00 0.00 46.67 5.34
296 297 1.204146 TCACCCAATACCTCCTCAGC 58.796 55.000 0.00 0.00 0.00 4.26
298 299 3.189606 ACAATCACCCAATACCTCCTCA 58.810 45.455 0.00 0.00 0.00 3.86
315 316 0.899717 ATGCTTTGGCGGTGGACAAT 60.900 50.000 0.00 0.00 41.86 2.71
316 317 1.523154 GATGCTTTGGCGGTGGACAA 61.523 55.000 0.00 0.00 40.15 3.18
319 320 2.361104 GGATGCTTTGGCGGTGGA 60.361 61.111 0.00 0.00 42.25 4.02
347 348 2.744823 GCCACAAAACAAAAGAAGGGGG 60.745 50.000 0.00 0.00 0.00 5.40
398 399 1.071699 GTTGGTAGTGGTCTCCTGCAA 59.928 52.381 0.00 0.00 0.00 4.08
402 403 3.166679 GAGAAGTTGGTAGTGGTCTCCT 58.833 50.000 0.00 0.00 0.00 3.69
405 406 3.261818 AGGAGAAGTTGGTAGTGGTCT 57.738 47.619 0.00 0.00 0.00 3.85
428 429 4.175489 ATCGTCACGTCGGAGCCG 62.175 66.667 1.74 1.74 41.35 5.52
436 437 0.168348 CGAGAAGGTCATCGTCACGT 59.832 55.000 0.00 0.00 34.60 4.49
438 439 2.722071 GATCGAGAAGGTCATCGTCAC 58.278 52.381 0.00 0.00 39.86 3.67
492 494 4.222847 CCCCGCCTCCTAGTTCGC 62.223 72.222 0.00 0.00 0.00 4.70
505 507 4.873129 CTGATCGTCACGGCCCCG 62.873 72.222 4.96 4.96 46.03 5.73
507 509 4.530857 CCCTGATCGTCACGGCCC 62.531 72.222 0.00 0.00 0.00 5.80
510 512 2.134287 ATCCCCCTGATCGTCACGG 61.134 63.158 0.00 0.00 0.00 4.94
511 513 1.068083 CATCCCCCTGATCGTCACG 59.932 63.158 0.00 0.00 0.00 4.35
513 515 1.766059 CCCATCCCCCTGATCGTCA 60.766 63.158 0.00 0.00 0.00 4.35
526 535 0.179103 CAAATGAAAGCCCGCCCATC 60.179 55.000 0.00 0.00 0.00 3.51
542 551 3.259374 TGGACAGTTGCCACTTTTTCAAA 59.741 39.130 0.00 0.00 0.00 2.69
543 552 2.828520 TGGACAGTTGCCACTTTTTCAA 59.171 40.909 0.00 0.00 0.00 2.69
544 553 2.451490 TGGACAGTTGCCACTTTTTCA 58.549 42.857 0.00 0.00 0.00 2.69
545 554 3.518634 TTGGACAGTTGCCACTTTTTC 57.481 42.857 0.00 0.00 34.56 2.29
551 560 1.869342 GCACATTTGGACAGTTGCCAC 60.869 52.381 0.00 0.00 34.56 5.01
554 563 0.310543 TCGCACATTTGGACAGTTGC 59.689 50.000 0.00 0.00 0.00 4.17
555 564 1.664016 GCTCGCACATTTGGACAGTTG 60.664 52.381 0.00 0.00 0.00 3.16
558 567 0.877071 AAGCTCGCACATTTGGACAG 59.123 50.000 0.00 0.00 0.00 3.51
559 568 0.874390 GAAGCTCGCACATTTGGACA 59.126 50.000 0.00 0.00 0.00 4.02
560 569 0.874390 TGAAGCTCGCACATTTGGAC 59.126 50.000 0.00 0.00 0.00 4.02
561 570 0.874390 GTGAAGCTCGCACATTTGGA 59.126 50.000 13.14 0.00 36.31 3.53
562 571 0.109597 GGTGAAGCTCGCACATTTGG 60.110 55.000 18.04 0.00 37.99 3.28
563 572 0.877071 AGGTGAAGCTCGCACATTTG 59.123 50.000 18.04 0.00 37.99 2.32
564 573 1.160137 GAGGTGAAGCTCGCACATTT 58.840 50.000 18.04 6.26 37.99 2.32
565 574 1.016130 CGAGGTGAAGCTCGCACATT 61.016 55.000 17.73 8.26 37.99 2.71
566 575 1.446792 CGAGGTGAAGCTCGCACAT 60.447 57.895 17.73 12.84 37.99 3.21
567 576 1.877576 ATCGAGGTGAAGCTCGCACA 61.878 55.000 23.27 10.01 42.17 4.57
568 577 0.737715 AATCGAGGTGAAGCTCGCAC 60.738 55.000 23.27 10.35 42.17 5.34
569 578 0.037326 AAATCGAGGTGAAGCTCGCA 60.037 50.000 23.27 14.29 42.17 5.10
570 579 1.079503 AAAATCGAGGTGAAGCTCGC 58.920 50.000 23.27 0.00 42.17 5.03
571 580 1.394917 CCAAAATCGAGGTGAAGCTCG 59.605 52.381 22.36 22.36 43.59 5.03
572 581 1.131315 GCCAAAATCGAGGTGAAGCTC 59.869 52.381 0.00 0.00 0.00 4.09
573 582 1.168714 GCCAAAATCGAGGTGAAGCT 58.831 50.000 0.00 0.00 0.00 3.74
574 583 1.135575 CAGCCAAAATCGAGGTGAAGC 60.136 52.381 0.00 0.00 0.00 3.86
575 584 2.095567 CACAGCCAAAATCGAGGTGAAG 60.096 50.000 7.68 0.00 0.00 3.02
576 585 1.879380 CACAGCCAAAATCGAGGTGAA 59.121 47.619 7.68 0.00 0.00 3.18
577 586 1.202758 ACACAGCCAAAATCGAGGTGA 60.203 47.619 7.68 0.00 0.00 4.02
578 587 1.197721 GACACAGCCAAAATCGAGGTG 59.802 52.381 0.00 0.00 0.00 4.00
579 588 1.523758 GACACAGCCAAAATCGAGGT 58.476 50.000 0.00 0.00 0.00 3.85
580 589 0.804989 GGACACAGCCAAAATCGAGG 59.195 55.000 0.00 0.00 0.00 4.63
581 590 0.443869 CGGACACAGCCAAAATCGAG 59.556 55.000 0.00 0.00 0.00 4.04
582 591 1.573829 GCGGACACAGCCAAAATCGA 61.574 55.000 0.00 0.00 0.00 3.59
583 592 1.154225 GCGGACACAGCCAAAATCG 60.154 57.895 0.00 0.00 0.00 3.34
584 593 1.154225 CGCGGACACAGCCAAAATC 60.154 57.895 0.00 0.00 0.00 2.17
585 594 2.953821 CGCGGACACAGCCAAAAT 59.046 55.556 0.00 0.00 0.00 1.82
586 595 3.959975 GCGCGGACACAGCCAAAA 61.960 61.111 8.83 0.00 0.00 2.44
587 596 4.927782 AGCGCGGACACAGCCAAA 62.928 61.111 8.83 0.00 0.00 3.28
592 601 4.662961 TCCACAGCGCGGACACAG 62.663 66.667 16.26 0.00 0.00 3.66
593 602 4.228567 TTCCACAGCGCGGACACA 62.229 61.111 16.26 0.00 30.29 3.72
594 603 3.712881 GTTCCACAGCGCGGACAC 61.713 66.667 16.26 6.92 30.29 3.67
601 610 1.447838 ATGTAGGCGTTCCACAGCG 60.448 57.895 0.00 0.00 33.74 5.18
602 611 0.391130 TCATGTAGGCGTTCCACAGC 60.391 55.000 0.00 0.00 33.74 4.40
603 612 1.935873 CATCATGTAGGCGTTCCACAG 59.064 52.381 0.00 0.00 33.74 3.66
604 613 1.406751 CCATCATGTAGGCGTTCCACA 60.407 52.381 0.00 0.00 33.74 4.17
605 614 1.299541 CCATCATGTAGGCGTTCCAC 58.700 55.000 0.00 0.00 33.74 4.02
606 615 0.463654 GCCATCATGTAGGCGTTCCA 60.464 55.000 13.80 0.00 41.70 3.53
607 616 2.321213 GCCATCATGTAGGCGTTCC 58.679 57.895 13.80 0.00 41.70 3.62
613 622 0.250038 CCGGACAGCCATCATGTAGG 60.250 60.000 0.00 0.00 0.00 3.18
614 623 0.752658 TCCGGACAGCCATCATGTAG 59.247 55.000 0.00 0.00 0.00 2.74
615 624 0.464036 GTCCGGACAGCCATCATGTA 59.536 55.000 29.75 0.00 0.00 2.29
616 625 1.221840 GTCCGGACAGCCATCATGT 59.778 57.895 29.75 0.00 0.00 3.21
617 626 1.884464 CGTCCGGACAGCCATCATG 60.884 63.158 32.80 10.53 0.00 3.07
618 627 2.501128 CGTCCGGACAGCCATCAT 59.499 61.111 32.80 0.00 0.00 2.45
619 628 3.770040 CCGTCCGGACAGCCATCA 61.770 66.667 32.80 0.00 37.50 3.07
637 646 4.016706 ACCGAGGGAGGTTTGCGG 62.017 66.667 0.00 0.00 43.00 5.69
644 653 1.880027 CAGAAACAAAACCGAGGGAGG 59.120 52.381 0.00 0.00 37.30 4.30
645 654 1.880027 CCAGAAACAAAACCGAGGGAG 59.120 52.381 0.00 0.00 0.00 4.30
646 655 1.213430 ACCAGAAACAAAACCGAGGGA 59.787 47.619 0.00 0.00 0.00 4.20
647 656 1.687563 ACCAGAAACAAAACCGAGGG 58.312 50.000 0.00 0.00 0.00 4.30
648 657 3.443976 CAAACCAGAAACAAAACCGAGG 58.556 45.455 0.00 0.00 0.00 4.63
649 658 2.857748 GCAAACCAGAAACAAAACCGAG 59.142 45.455 0.00 0.00 0.00 4.63
650 659 2.732597 CGCAAACCAGAAACAAAACCGA 60.733 45.455 0.00 0.00 0.00 4.69
651 660 1.586123 CGCAAACCAGAAACAAAACCG 59.414 47.619 0.00 0.00 0.00 4.44
652 661 1.930503 CCGCAAACCAGAAACAAAACC 59.069 47.619 0.00 0.00 0.00 3.27
653 662 1.930503 CCCGCAAACCAGAAACAAAAC 59.069 47.619 0.00 0.00 0.00 2.43
654 663 1.825474 TCCCGCAAACCAGAAACAAAA 59.175 42.857 0.00 0.00 0.00 2.44
655 664 1.475403 TCCCGCAAACCAGAAACAAA 58.525 45.000 0.00 0.00 0.00 2.83
656 665 1.407258 CTTCCCGCAAACCAGAAACAA 59.593 47.619 0.00 0.00 0.00 2.83
657 666 1.028905 CTTCCCGCAAACCAGAAACA 58.971 50.000 0.00 0.00 0.00 2.83
658 667 1.314730 TCTTCCCGCAAACCAGAAAC 58.685 50.000 0.00 0.00 0.00 2.78
659 668 2.060050 TTCTTCCCGCAAACCAGAAA 57.940 45.000 0.00 0.00 0.00 2.52
660 669 2.286365 ATTCTTCCCGCAAACCAGAA 57.714 45.000 0.00 0.00 0.00 3.02
661 670 2.286365 AATTCTTCCCGCAAACCAGA 57.714 45.000 0.00 0.00 0.00 3.86
662 671 2.295909 TCAAATTCTTCCCGCAAACCAG 59.704 45.455 0.00 0.00 0.00 4.00
663 672 2.311463 TCAAATTCTTCCCGCAAACCA 58.689 42.857 0.00 0.00 0.00 3.67
664 673 3.057019 GTTCAAATTCTTCCCGCAAACC 58.943 45.455 0.00 0.00 0.00 3.27
665 674 2.724174 CGTTCAAATTCTTCCCGCAAAC 59.276 45.455 0.00 0.00 0.00 2.93
666 675 2.359531 ACGTTCAAATTCTTCCCGCAAA 59.640 40.909 0.00 0.00 0.00 3.68
667 676 1.950909 ACGTTCAAATTCTTCCCGCAA 59.049 42.857 0.00 0.00 0.00 4.85
668 677 1.265635 CACGTTCAAATTCTTCCCGCA 59.734 47.619 0.00 0.00 0.00 5.69
669 678 1.963747 CACGTTCAAATTCTTCCCGC 58.036 50.000 0.00 0.00 0.00 6.13
670 679 1.724654 CGCACGTTCAAATTCTTCCCG 60.725 52.381 0.00 0.00 0.00 5.14
671 680 1.401018 CCGCACGTTCAAATTCTTCCC 60.401 52.381 0.00 0.00 0.00 3.97
672 681 1.533731 TCCGCACGTTCAAATTCTTCC 59.466 47.619 0.00 0.00 0.00 3.46
673 682 2.961522 TCCGCACGTTCAAATTCTTC 57.038 45.000 0.00 0.00 0.00 2.87
674 683 2.159707 CGATCCGCACGTTCAAATTCTT 60.160 45.455 0.00 0.00 0.00 2.52
675 684 1.393539 CGATCCGCACGTTCAAATTCT 59.606 47.619 0.00 0.00 0.00 2.40
676 685 1.127951 ACGATCCGCACGTTCAAATTC 59.872 47.619 0.00 0.00 41.18 2.17
677 686 1.153353 ACGATCCGCACGTTCAAATT 58.847 45.000 0.00 0.00 41.18 1.82
678 687 2.835605 ACGATCCGCACGTTCAAAT 58.164 47.368 0.00 0.00 41.18 2.32
679 688 4.347096 ACGATCCGCACGTTCAAA 57.653 50.000 0.00 0.00 41.18 2.69
684 693 1.736645 CCTCAAACGATCCGCACGT 60.737 57.895 0.00 0.00 45.89 4.49
685 694 2.452813 CCCTCAAACGATCCGCACG 61.453 63.158 0.00 0.00 0.00 5.34
686 695 2.750888 GCCCTCAAACGATCCGCAC 61.751 63.158 0.00 0.00 0.00 5.34
687 696 2.435938 GCCCTCAAACGATCCGCA 60.436 61.111 0.00 0.00 0.00 5.69
688 697 3.564027 CGCCCTCAAACGATCCGC 61.564 66.667 0.00 0.00 0.00 5.54
689 698 1.740296 AACGCCCTCAAACGATCCG 60.740 57.895 0.00 0.00 0.00 4.18
690 699 1.644786 CCAACGCCCTCAAACGATCC 61.645 60.000 0.00 0.00 0.00 3.36
691 700 0.672401 TCCAACGCCCTCAAACGATC 60.672 55.000 0.00 0.00 0.00 3.69
692 701 0.035439 ATCCAACGCCCTCAAACGAT 60.035 50.000 0.00 0.00 0.00 3.73
693 702 0.953471 CATCCAACGCCCTCAAACGA 60.953 55.000 0.00 0.00 0.00 3.85
694 703 1.501741 CATCCAACGCCCTCAAACG 59.498 57.895 0.00 0.00 0.00 3.60
695 704 1.212751 GCATCCAACGCCCTCAAAC 59.787 57.895 0.00 0.00 0.00 2.93
696 705 0.611618 ATGCATCCAACGCCCTCAAA 60.612 50.000 0.00 0.00 0.00 2.69
697 706 1.001020 ATGCATCCAACGCCCTCAA 60.001 52.632 0.00 0.00 0.00 3.02
698 707 1.750018 CATGCATCCAACGCCCTCA 60.750 57.895 0.00 0.00 0.00 3.86
699 708 1.451927 TCATGCATCCAACGCCCTC 60.452 57.895 0.00 0.00 0.00 4.30
700 709 1.750399 GTCATGCATCCAACGCCCT 60.750 57.895 0.00 0.00 0.00 5.19
701 710 2.045708 TGTCATGCATCCAACGCCC 61.046 57.895 0.00 0.00 0.00 6.13
702 711 1.137404 GTGTCATGCATCCAACGCC 59.863 57.895 0.00 0.00 0.00 5.68
703 712 1.368641 TAGTGTCATGCATCCAACGC 58.631 50.000 0.00 2.43 0.00 4.84
704 713 4.094739 TCATTTAGTGTCATGCATCCAACG 59.905 41.667 0.00 0.00 0.00 4.10
705 714 5.335127 GTCATTTAGTGTCATGCATCCAAC 58.665 41.667 0.00 0.00 0.00 3.77
706 715 4.398988 GGTCATTTAGTGTCATGCATCCAA 59.601 41.667 0.00 0.00 0.00 3.53
707 716 3.947196 GGTCATTTAGTGTCATGCATCCA 59.053 43.478 0.00 0.00 0.00 3.41
708 717 3.316308 GGGTCATTTAGTGTCATGCATCC 59.684 47.826 0.00 0.00 0.00 3.51
709 718 3.947196 TGGGTCATTTAGTGTCATGCATC 59.053 43.478 0.00 0.00 0.00 3.91
710 719 3.966979 TGGGTCATTTAGTGTCATGCAT 58.033 40.909 0.00 0.00 0.00 3.96
711 720 3.431673 TGGGTCATTTAGTGTCATGCA 57.568 42.857 0.00 0.00 0.00 3.96
712 721 4.782019 TTTGGGTCATTTAGTGTCATGC 57.218 40.909 0.00 0.00 0.00 4.06
717 726 9.936329 AGGAATATATTTTGGGTCATTTAGTGT 57.064 29.630 0.00 0.00 0.00 3.55
720 729 9.696917 GCAAGGAATATATTTTGGGTCATTTAG 57.303 33.333 10.47 0.00 0.00 1.85
721 730 9.206690 TGCAAGGAATATATTTTGGGTCATTTA 57.793 29.630 10.47 0.00 0.00 1.40
722 731 8.088463 TGCAAGGAATATATTTTGGGTCATTT 57.912 30.769 10.47 0.00 0.00 2.32
723 732 7.673641 TGCAAGGAATATATTTTGGGTCATT 57.326 32.000 10.47 0.00 0.00 2.57
724 733 7.418942 GGTTGCAAGGAATATATTTTGGGTCAT 60.419 37.037 0.00 0.00 0.00 3.06
725 734 6.127196 GGTTGCAAGGAATATATTTTGGGTCA 60.127 38.462 0.00 0.70 0.00 4.02
726 735 6.280643 GGTTGCAAGGAATATATTTTGGGTC 58.719 40.000 0.00 0.00 0.00 4.46
727 736 5.130311 GGGTTGCAAGGAATATATTTTGGGT 59.870 40.000 0.00 0.00 0.00 4.51
728 737 5.130145 TGGGTTGCAAGGAATATATTTTGGG 59.870 40.000 0.00 0.01 0.00 4.12
729 738 6.232581 TGGGTTGCAAGGAATATATTTTGG 57.767 37.500 0.00 0.00 0.00 3.28
730 739 8.558973 TTTTGGGTTGCAAGGAATATATTTTG 57.441 30.769 0.00 2.76 0.00 2.44
760 769 8.575589 GTTCATAAATTTTGGGCCATTCTTTTT 58.424 29.630 7.26 6.38 0.00 1.94
761 770 7.094848 CGTTCATAAATTTTGGGCCATTCTTTT 60.095 33.333 7.26 8.18 0.00 2.27
762 771 6.371271 CGTTCATAAATTTTGGGCCATTCTTT 59.629 34.615 7.26 9.84 0.00 2.52
763 772 5.874261 CGTTCATAAATTTTGGGCCATTCTT 59.126 36.000 7.26 1.21 0.00 2.52
764 773 5.046663 ACGTTCATAAATTTTGGGCCATTCT 60.047 36.000 7.26 0.00 0.00 2.40
765 774 5.175127 ACGTTCATAAATTTTGGGCCATTC 58.825 37.500 7.26 0.00 0.00 2.67
766 775 5.159273 ACGTTCATAAATTTTGGGCCATT 57.841 34.783 7.26 0.05 0.00 3.16
767 776 4.817318 ACGTTCATAAATTTTGGGCCAT 57.183 36.364 7.26 0.00 0.00 4.40
768 777 4.039245 TGAACGTTCATAAATTTTGGGCCA 59.961 37.500 26.53 0.00 31.01 5.36
769 778 4.561105 TGAACGTTCATAAATTTTGGGCC 58.439 39.130 26.53 0.00 31.01 5.80
770 779 5.694458 ACTTGAACGTTCATAAATTTTGGGC 59.306 36.000 30.10 0.00 37.00 5.36
771 780 6.346518 GCACTTGAACGTTCATAAATTTTGGG 60.347 38.462 30.10 14.71 37.00 4.12
772 781 6.420604 AGCACTTGAACGTTCATAAATTTTGG 59.579 34.615 30.10 13.51 37.00 3.28
773 782 7.275785 CAGCACTTGAACGTTCATAAATTTTG 58.724 34.615 30.10 18.57 37.00 2.44
774 783 6.074356 GCAGCACTTGAACGTTCATAAATTTT 60.074 34.615 30.10 11.23 37.00 1.82
775 784 5.402270 GCAGCACTTGAACGTTCATAAATTT 59.598 36.000 30.10 12.72 37.00 1.82
776 785 4.917415 GCAGCACTTGAACGTTCATAAATT 59.083 37.500 30.10 14.20 37.00 1.82
777 786 4.216257 AGCAGCACTTGAACGTTCATAAAT 59.784 37.500 30.10 13.89 37.00 1.40
778 787 3.563808 AGCAGCACTTGAACGTTCATAAA 59.436 39.130 30.10 15.62 37.00 1.40
779 788 3.058983 CAGCAGCACTTGAACGTTCATAA 60.059 43.478 30.10 16.34 37.00 1.90
780 789 2.480037 CAGCAGCACTTGAACGTTCATA 59.520 45.455 30.10 19.23 37.00 2.15
781 790 1.265095 CAGCAGCACTTGAACGTTCAT 59.735 47.619 30.10 14.95 37.00 2.57
782 791 0.657312 CAGCAGCACTTGAACGTTCA 59.343 50.000 26.53 26.53 34.92 3.18
783 792 3.444657 CAGCAGCACTTGAACGTTC 57.555 52.632 21.42 21.42 0.00 3.95
1004 1013 2.949678 CGTCGGATCGAAGTGGCG 60.950 66.667 0.00 0.00 37.72 5.69
1014 1023 2.791256 CAAAATGGCGCGTCGGAT 59.209 55.556 6.09 0.00 0.00 4.18
1039 1048 1.384191 GGGCTGGATTGGGACACTT 59.616 57.895 0.00 0.00 39.29 3.16
1560 1586 2.203422 ATCTCGAGGAGGAGGCCG 60.203 66.667 13.56 0.00 34.74 6.13
1710 1736 1.423584 TGAGGTTGGAGAAGAGCACA 58.576 50.000 0.00 0.00 0.00 4.57
2034 2064 1.795768 TGAGCACGATGTTGAAGACC 58.204 50.000 0.00 0.00 0.00 3.85
2409 3735 4.033776 TCCAGCTTCCCGGCCTTG 62.034 66.667 0.00 0.00 0.00 3.61
2733 4068 1.961277 GAACACCTCCACCACGCTG 60.961 63.158 0.00 0.00 0.00 5.18
2799 4134 1.082117 CGTAGGCGTTCATGGTGACC 61.082 60.000 0.00 0.00 0.00 4.02
2971 4306 2.520260 GATGCTGGGGTCATGGCC 60.520 66.667 8.19 8.19 0.00 5.36
3036 4371 1.369625 CCGCCTCATCAAACCTGTAC 58.630 55.000 0.00 0.00 0.00 2.90
3048 4383 0.829990 TGATAATCTGTGCCGCCTCA 59.170 50.000 0.00 0.00 0.00 3.86
3086 4421 3.074412 AGTTTCTGGACGCGAAAATCAT 58.926 40.909 15.93 0.00 32.71 2.45
3087 4422 2.478894 GAGTTTCTGGACGCGAAAATCA 59.521 45.455 15.93 2.16 42.06 2.57
3117 4452 9.650539 CAGCTGATATAGTGATATTTACAAGCT 57.349 33.333 8.42 0.00 0.00 3.74
3118 4453 8.877779 CCAGCTGATATAGTGATATTTACAAGC 58.122 37.037 17.39 0.00 0.00 4.01
3119 4454 9.935241 ACCAGCTGATATAGTGATATTTACAAG 57.065 33.333 17.39 0.00 0.00 3.16
3136 4471 9.632638 ATGTGTTTATAAATCTAACCAGCTGAT 57.367 29.630 17.39 6.23 0.00 2.90
3137 4472 8.892723 CATGTGTTTATAAATCTAACCAGCTGA 58.107 33.333 17.39 0.00 0.00 4.26
3138 4473 8.892723 TCATGTGTTTATAAATCTAACCAGCTG 58.107 33.333 6.78 6.78 0.00 4.24
3139 4474 9.632638 ATCATGTGTTTATAAATCTAACCAGCT 57.367 29.630 0.31 0.00 0.00 4.24
3153 4488 9.723601 AGCATTTTACCAAAATCATGTGTTTAT 57.276 25.926 0.00 0.00 38.97 1.40
3154 4489 8.986847 CAGCATTTTACCAAAATCATGTGTTTA 58.013 29.630 0.00 0.00 38.97 2.01
3155 4490 7.041235 CCAGCATTTTACCAAAATCATGTGTTT 60.041 33.333 0.00 0.00 38.97 2.83
3156 4491 6.427547 CCAGCATTTTACCAAAATCATGTGTT 59.572 34.615 0.00 0.00 38.97 3.32
3157 4492 5.933463 CCAGCATTTTACCAAAATCATGTGT 59.067 36.000 0.00 0.00 38.97 3.72
3158 4493 5.933463 ACCAGCATTTTACCAAAATCATGTG 59.067 36.000 0.00 0.00 38.97 3.21
3159 4494 6.112927 ACCAGCATTTTACCAAAATCATGT 57.887 33.333 0.00 0.00 38.97 3.21
3160 4495 7.601886 TGTTACCAGCATTTTACCAAAATCATG 59.398 33.333 0.00 0.00 38.97 3.07
3161 4496 7.675062 TGTTACCAGCATTTTACCAAAATCAT 58.325 30.769 0.00 0.00 38.97 2.45
3162 4497 7.055667 TGTTACCAGCATTTTACCAAAATCA 57.944 32.000 0.00 0.00 38.97 2.57
3163 4498 8.546597 AATGTTACCAGCATTTTACCAAAATC 57.453 30.769 0.00 0.00 38.97 2.17
3164 4499 7.606073 GGAATGTTACCAGCATTTTACCAAAAT 59.394 33.333 0.00 0.00 41.57 1.82
3165 4500 6.931840 GGAATGTTACCAGCATTTTACCAAAA 59.068 34.615 0.00 0.00 36.77 2.44
3166 4501 6.268847 AGGAATGTTACCAGCATTTTACCAAA 59.731 34.615 0.00 0.00 36.77 3.28
3167 4502 5.777732 AGGAATGTTACCAGCATTTTACCAA 59.222 36.000 0.00 0.00 36.77 3.67
3168 4503 5.329399 AGGAATGTTACCAGCATTTTACCA 58.671 37.500 0.00 0.00 36.77 3.25
3169 4504 5.448632 CGAGGAATGTTACCAGCATTTTACC 60.449 44.000 0.00 0.00 36.77 2.85
3170 4505 5.353123 TCGAGGAATGTTACCAGCATTTTAC 59.647 40.000 0.00 0.00 36.77 2.01
3171 4506 5.492895 TCGAGGAATGTTACCAGCATTTTA 58.507 37.500 0.00 0.00 36.77 1.52
3172 4507 4.331968 TCGAGGAATGTTACCAGCATTTT 58.668 39.130 0.00 0.00 36.77 1.82
3173 4508 3.950397 TCGAGGAATGTTACCAGCATTT 58.050 40.909 0.00 0.00 36.77 2.32
3174 4509 3.627395 TCGAGGAATGTTACCAGCATT 57.373 42.857 0.00 0.00 39.04 3.56
3175 4510 3.845781 ATCGAGGAATGTTACCAGCAT 57.154 42.857 0.00 0.00 0.00 3.79
3176 4511 3.627395 AATCGAGGAATGTTACCAGCA 57.373 42.857 0.00 0.00 0.00 4.41
3177 4512 4.965119 AAAATCGAGGAATGTTACCAGC 57.035 40.909 0.00 0.00 0.00 4.85
3178 4513 5.095490 GCAAAAATCGAGGAATGTTACCAG 58.905 41.667 0.00 0.00 0.00 4.00
3179 4514 4.520874 TGCAAAAATCGAGGAATGTTACCA 59.479 37.500 0.00 0.00 0.00 3.25
3180 4515 5.054390 TGCAAAAATCGAGGAATGTTACC 57.946 39.130 0.00 0.00 0.00 2.85
3181 4516 5.743872 GGATGCAAAAATCGAGGAATGTTAC 59.256 40.000 0.00 0.00 0.00 2.50
3182 4517 5.417266 TGGATGCAAAAATCGAGGAATGTTA 59.583 36.000 0.00 0.00 0.00 2.41
3183 4518 4.220382 TGGATGCAAAAATCGAGGAATGTT 59.780 37.500 0.00 0.00 0.00 2.71
3184 4519 3.763360 TGGATGCAAAAATCGAGGAATGT 59.237 39.130 0.00 0.00 0.00 2.71
3185 4520 4.096833 TCTGGATGCAAAAATCGAGGAATG 59.903 41.667 0.00 0.00 34.26 2.67
3186 4521 4.272489 TCTGGATGCAAAAATCGAGGAAT 58.728 39.130 0.00 0.00 34.26 3.01
3187 4522 3.684908 TCTGGATGCAAAAATCGAGGAA 58.315 40.909 0.00 0.00 34.26 3.36
3188 4523 3.348647 TCTGGATGCAAAAATCGAGGA 57.651 42.857 0.00 0.00 34.26 3.71
3189 4524 4.082571 AGTTTCTGGATGCAAAAATCGAGG 60.083 41.667 0.00 0.00 34.26 4.63
3190 4525 5.051891 AGTTTCTGGATGCAAAAATCGAG 57.948 39.130 0.00 0.00 34.65 4.04
3191 4526 4.518590 TGAGTTTCTGGATGCAAAAATCGA 59.481 37.500 13.18 0.00 31.56 3.59
3192 4527 4.797471 TGAGTTTCTGGATGCAAAAATCG 58.203 39.130 13.18 0.00 31.56 3.34
3193 4528 7.662604 ATTTGAGTTTCTGGATGCAAAAATC 57.337 32.000 12.02 12.02 0.00 2.17
3194 4529 9.211485 CTTATTTGAGTTTCTGGATGCAAAAAT 57.789 29.630 0.00 0.00 0.00 1.82
3195 4530 8.420222 TCTTATTTGAGTTTCTGGATGCAAAAA 58.580 29.630 0.00 0.00 0.00 1.94
3196 4531 7.950512 TCTTATTTGAGTTTCTGGATGCAAAA 58.049 30.769 0.00 0.00 0.00 2.44
3197 4532 7.523293 TCTTATTTGAGTTTCTGGATGCAAA 57.477 32.000 0.00 0.00 0.00 3.68
3198 4533 7.523293 TTCTTATTTGAGTTTCTGGATGCAA 57.477 32.000 0.00 0.00 0.00 4.08
3199 4534 6.349611 GCTTCTTATTTGAGTTTCTGGATGCA 60.350 38.462 0.00 0.00 0.00 3.96
3200 4535 6.032717 GCTTCTTATTTGAGTTTCTGGATGC 58.967 40.000 0.00 0.00 0.00 3.91
3201 4536 7.388460 AGCTTCTTATTTGAGTTTCTGGATG 57.612 36.000 0.00 0.00 0.00 3.51
3202 4537 7.667219 TGAAGCTTCTTATTTGAGTTTCTGGAT 59.333 33.333 26.09 0.00 0.00 3.41
3203 4538 6.998074 TGAAGCTTCTTATTTGAGTTTCTGGA 59.002 34.615 26.09 0.00 0.00 3.86
3204 4539 7.040823 ACTGAAGCTTCTTATTTGAGTTTCTGG 60.041 37.037 26.09 0.00 0.00 3.86
3205 4540 7.869800 ACTGAAGCTTCTTATTTGAGTTTCTG 58.130 34.615 26.09 3.15 0.00 3.02
3206 4541 8.994170 GTACTGAAGCTTCTTATTTGAGTTTCT 58.006 33.333 26.09 1.71 0.00 2.52
3207 4542 8.231161 GGTACTGAAGCTTCTTATTTGAGTTTC 58.769 37.037 26.09 14.38 0.00 2.78
3208 4543 7.939588 AGGTACTGAAGCTTCTTATTTGAGTTT 59.060 33.333 26.09 7.06 37.18 2.66
3209 4544 7.454225 AGGTACTGAAGCTTCTTATTTGAGTT 58.546 34.615 26.09 3.34 37.18 3.01
3210 4545 7.010339 AGGTACTGAAGCTTCTTATTTGAGT 57.990 36.000 26.09 20.01 37.18 3.41
3211 4546 7.327214 AGAGGTACTGAAGCTTCTTATTTGAG 58.673 38.462 26.09 15.61 41.55 3.02
3212 4547 7.246171 AGAGGTACTGAAGCTTCTTATTTGA 57.754 36.000 26.09 4.18 41.55 2.69
3213 4548 7.913674 AAGAGGTACTGAAGCTTCTTATTTG 57.086 36.000 26.09 11.85 41.55 2.32
3214 4549 9.825109 GATAAGAGGTACTGAAGCTTCTTATTT 57.175 33.333 26.09 12.12 41.55 1.40
3215 4550 8.982723 TGATAAGAGGTACTGAAGCTTCTTATT 58.017 33.333 26.09 10.72 41.55 1.40
3216 4551 8.417884 GTGATAAGAGGTACTGAAGCTTCTTAT 58.582 37.037 26.09 17.84 41.55 1.73
3217 4552 7.415318 CGTGATAAGAGGTACTGAAGCTTCTTA 60.415 40.741 26.09 14.14 41.55 2.10
3231 4566 3.018149 GACTCTGGACGTGATAAGAGGT 58.982 50.000 14.40 4.40 40.41 3.85
3236 4571 2.753452 GTCTGGACTCTGGACGTGATAA 59.247 50.000 0.00 0.00 0.00 1.75
3238 4573 1.178276 GTCTGGACTCTGGACGTGAT 58.822 55.000 0.00 0.00 0.00 3.06
3242 4577 1.214062 GCTGTCTGGACTCTGGACG 59.786 63.158 2.38 0.00 33.21 4.79
3252 4587 2.233186 TGTCAGAATCTCTGCTGTCTGG 59.767 50.000 8.45 0.00 43.95 3.86
3256 4591 5.048224 CCAATTTTGTCAGAATCTCTGCTGT 60.048 40.000 0.00 0.00 43.95 4.40
3258 4593 5.319453 TCCAATTTTGTCAGAATCTCTGCT 58.681 37.500 0.00 0.00 43.95 4.24
3279 4614 3.317603 TTTTAAGCTTGCTGGCATTCC 57.682 42.857 9.86 0.00 34.17 3.01
3285 4620 2.827921 ACCTGGATTTTAAGCTTGCTGG 59.172 45.455 9.86 3.65 0.00 4.85
3300 4636 4.764050 TTTACAAGTCACAAGACCTGGA 57.236 40.909 0.00 0.00 46.15 3.86
3301 4637 4.821805 ACATTTACAAGTCACAAGACCTGG 59.178 41.667 0.00 0.00 46.15 4.45
3303 4639 5.680619 TGACATTTACAAGTCACAAGACCT 58.319 37.500 0.00 0.00 46.15 3.85
3304 4640 5.560953 GCTGACATTTACAAGTCACAAGACC 60.561 44.000 0.00 0.00 46.15 3.85
3313 4649 6.633500 TTAAGCTTGCTGACATTTACAAGT 57.367 33.333 9.86 0.00 41.22 3.16
3315 4651 9.787532 GATATTTAAGCTTGCTGACATTTACAA 57.212 29.630 9.86 0.00 0.00 2.41
3317 4653 9.443283 CTGATATTTAAGCTTGCTGACATTTAC 57.557 33.333 9.86 0.00 0.00 2.01
3318 4654 9.394767 TCTGATATTTAAGCTTGCTGACATTTA 57.605 29.630 9.86 0.00 0.00 1.40
3319 4655 8.284945 TCTGATATTTAAGCTTGCTGACATTT 57.715 30.769 9.86 0.00 0.00 2.32
3320 4656 7.870509 TCTGATATTTAAGCTTGCTGACATT 57.129 32.000 9.86 0.00 0.00 2.71
3321 4657 9.217278 CTATCTGATATTTAAGCTTGCTGACAT 57.783 33.333 9.86 0.00 0.00 3.06
3322 4658 8.206867 ACTATCTGATATTTAAGCTTGCTGACA 58.793 33.333 9.86 1.90 0.00 3.58
3365 4727 2.327568 ACAGCATTTTCGCCAAAATCG 58.672 42.857 0.00 0.00 39.75 3.34
3375 4737 6.368791 GTCCAGGGAATTTTAACAGCATTTTC 59.631 38.462 0.00 0.00 0.00 2.29
3457 4825 3.423539 TGTCAAGAGGCTGCATTAACT 57.576 42.857 0.50 0.00 0.00 2.24
3482 4854 7.559590 AATGCACAGTTCAAGGTCTATTATC 57.440 36.000 0.00 0.00 0.00 1.75
3483 4855 8.486210 TCTAATGCACAGTTCAAGGTCTATTAT 58.514 33.333 0.00 0.00 0.00 1.28
3484 4856 7.847096 TCTAATGCACAGTTCAAGGTCTATTA 58.153 34.615 0.00 0.00 0.00 0.98
3485 4857 6.711277 TCTAATGCACAGTTCAAGGTCTATT 58.289 36.000 0.00 0.00 0.00 1.73
3718 5094 0.107831 GCCACGCCATATGTCCCTTA 59.892 55.000 1.24 0.00 0.00 2.69
3719 5095 1.152963 GCCACGCCATATGTCCCTT 60.153 57.895 1.24 0.00 0.00 3.95
3720 5096 2.329539 CTGCCACGCCATATGTCCCT 62.330 60.000 1.24 0.00 0.00 4.20
4030 5463 2.101415 GCAGCCTTTGAATGGAATACCC 59.899 50.000 0.70 0.00 34.81 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.