Multiple sequence alignment - TraesCS3D01G345000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G345000 chr3D 100.000 5514 0 0 1 5514 456636772 456631259 0.000000e+00 10183.0
1 TraesCS3D01G345000 chr3D 97.143 175 5 0 4635 4809 7233016 7232842 4.180000e-76 296.0
2 TraesCS3D01G345000 chr3D 90.286 175 12 3 2223 2392 456634260 456634086 2.000000e-54 224.0
3 TraesCS3D01G345000 chr3D 90.286 175 12 3 2513 2687 456634550 456634381 2.000000e-54 224.0
4 TraesCS3D01G345000 chr3D 90.511 137 6 3 1961 2090 456634386 456634250 2.040000e-39 174.0
5 TraesCS3D01G345000 chr3D 90.511 137 6 3 2387 2523 456634812 456634683 2.040000e-39 174.0
6 TraesCS3D01G345000 chr3D 88.889 108 10 2 2718 2825 586518478 586518583 1.250000e-26 132.0
7 TraesCS3D01G345000 chr3A 94.301 2281 96 18 2387 4658 599414048 599411793 0.000000e+00 3461.0
8 TraesCS3D01G345000 chr3A 86.297 883 78 27 788 1652 599415610 599414753 0.000000e+00 920.0
9 TraesCS3D01G345000 chr3A 93.972 282 15 1 1809 2090 599414200 599413921 5.110000e-115 425.0
10 TraesCS3D01G345000 chr3A 88.421 285 19 7 5236 5514 599410976 599410700 1.140000e-86 331.0
11 TraesCS3D01G345000 chr3A 84.545 330 29 5 1 315 599422983 599422661 1.930000e-79 307.0
12 TraesCS3D01G345000 chr3A 94.565 184 8 2 4812 4994 599411727 599411545 3.250000e-72 283.0
13 TraesCS3D01G345000 chr3A 90.857 175 11 3 2223 2392 599413931 599413757 4.300000e-56 230.0
14 TraesCS3D01G345000 chr3A 84.016 244 30 6 3802 4041 599402106 599401868 5.560000e-55 226.0
15 TraesCS3D01G345000 chr3A 85.294 204 30 0 4324 4527 599400024 599399821 1.560000e-50 211.0
16 TraesCS3D01G345000 chr3A 87.879 165 14 3 1759 1920 599414426 599414265 7.290000e-44 189.0
17 TraesCS3D01G345000 chr3A 93.277 119 8 0 1805 1923 599414292 599414174 5.680000e-40 176.0
18 TraesCS3D01G345000 chr3A 93.182 44 3 0 671 714 599415665 599415622 1.280000e-06 65.8
19 TraesCS3D01G345000 chr3A 100.000 28 0 0 1809 1836 599414112 599414085 1.000000e-02 52.8
20 TraesCS3D01G345000 chr3B 94.555 1910 78 17 2743 4642 603466197 603464304 0.000000e+00 2928.0
21 TraesCS3D01G345000 chr3B 94.093 1913 57 19 842 2708 603468102 603466200 0.000000e+00 2856.0
22 TraesCS3D01G345000 chr3B 88.873 719 41 18 4812 5512 603464249 603463552 0.000000e+00 848.0
23 TraesCS3D01G345000 chr3B 87.552 715 70 13 1 705 603469079 603468374 0.000000e+00 809.0
24 TraesCS3D01G345000 chr3B 81.975 405 53 9 4123 4527 603461556 603461172 5.330000e-85 326.0
25 TraesCS3D01G345000 chr3B 90.286 175 12 3 2223 2392 603466395 603466221 2.000000e-54 224.0
26 TraesCS3D01G345000 chr3B 90.511 137 5 3 2387 2523 603466957 603466829 2.040000e-39 174.0
27 TraesCS3D01G345000 chr3B 89.051 137 8 3 1961 2090 603466521 603466385 4.420000e-36 163.0
28 TraesCS3D01G345000 chr5A 97.143 175 5 0 4636 4810 382566807 382566633 4.180000e-76 296.0
29 TraesCS3D01G345000 chr5A 94.180 189 7 4 4641 4825 429513629 429513441 9.040000e-73 285.0
30 TraesCS3D01G345000 chr5A 95.531 179 6 2 4638 4816 651496989 651496813 9.040000e-73 285.0
31 TraesCS3D01G345000 chr5A 82.778 180 16 7 159 324 26438412 26438590 4.450000e-31 147.0
32 TraesCS3D01G345000 chr6D 97.093 172 4 1 4637 4807 32865338 32865167 6.990000e-74 289.0
33 TraesCS3D01G345000 chr6D 95.580 181 5 2 4641 4820 392896975 392897153 2.510000e-73 287.0
34 TraesCS3D01G345000 chr6D 100.000 30 0 0 3035 3064 75403404 75403433 7.720000e-04 56.5
35 TraesCS3D01G345000 chr7B 96.532 173 6 0 4636 4808 641152375 641152203 2.510000e-73 287.0
36 TraesCS3D01G345000 chr2D 96.532 173 6 0 4638 4810 516708309 516708481 2.510000e-73 287.0
37 TraesCS3D01G345000 chr2D 100.000 29 0 0 3035 3063 31731954 31731982 3.000000e-03 54.7
38 TraesCS3D01G345000 chr2D 100.000 29 0 0 3035 3063 76645037 76645009 3.000000e-03 54.7
39 TraesCS3D01G345000 chr6B 95.480 177 8 0 4631 4807 685981433 685981609 3.250000e-72 283.0
40 TraesCS3D01G345000 chr6B 90.541 74 6 1 2965 3037 706066199 706066126 4.550000e-16 97.1
41 TraesCS3D01G345000 chr1D 82.609 184 31 1 1145 1327 23369475 23369292 1.590000e-35 161.0
42 TraesCS3D01G345000 chr1A 84.722 144 21 1 1185 1327 24364293 24364150 5.760000e-30 143.0
43 TraesCS3D01G345000 chr1A 87.619 105 11 1 2962 3066 459946442 459946340 2.700000e-23 121.0
44 TraesCS3D01G345000 chr4A 78.750 240 29 8 159 383 88785088 88785320 2.070000e-29 141.0
45 TraesCS3D01G345000 chr4A 80.541 185 24 7 208 386 56439890 56439712 1.250000e-26 132.0
46 TraesCS3D01G345000 chr4A 79.897 194 24 8 159 338 56293972 56293780 1.610000e-25 128.0
47 TraesCS3D01G345000 chr4A 82.639 144 18 4 200 338 590949854 590949995 2.700000e-23 121.0
48 TraesCS3D01G345000 chr4A 83.453 139 14 5 205 338 665623097 665622963 2.700000e-23 121.0
49 TraesCS3D01G345000 chr7D 84.173 139 16 4 205 338 51434392 51434529 4.480000e-26 130.0
50 TraesCS3D01G345000 chr7A 91.489 94 4 2 205 294 53912627 53912720 5.800000e-25 126.0
51 TraesCS3D01G345000 chr2B 96.721 61 2 0 2713 2773 86677302 86677242 9.770000e-18 102.0
52 TraesCS3D01G345000 chr5D 90.698 43 4 0 3022 3064 101761996 101762038 2.150000e-04 58.4
53 TraesCS3D01G345000 chr5D 96.875 32 1 0 3035 3066 391820083 391820052 3.000000e-03 54.7
54 TraesCS3D01G345000 chr4D 100.000 29 0 0 3035 3063 7905764 7905736 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G345000 chr3D 456631259 456636772 5513 True 2195.80 10183 92.3188 1 5514 5 chr3D.!!$R2 5513
1 TraesCS3D01G345000 chr3A 599410700 599415665 4965 True 613.36 3461 92.2751 671 5514 10 chr3A.!!$R3 4843
2 TraesCS3D01G345000 chr3A 599399821 599402106 2285 True 218.50 226 84.6550 3802 4527 2 chr3A.!!$R2 725
3 TraesCS3D01G345000 chr3B 603461172 603469079 7907 True 1041.00 2928 89.6120 1 5512 8 chr3B.!!$R1 5511

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
268 272 0.102120 CATCAGTCTCGCACCCTCTC 59.898 60.0 0.00 0.0 0.00 3.20 F
723 893 0.179468 TCCCTATTTTTCGGCGGGAG 59.821 55.0 7.21 0.0 38.95 4.30 F
2160 2793 0.032017 AGGTCCCTGATAACCTCGCT 60.032 55.0 0.00 0.0 42.28 4.93 F
2961 3596 0.896226 GGTCCTCCGCTACTGTTCTT 59.104 55.0 0.00 0.0 0.00 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2103 2727 0.037303 CACCAGATTCCACTGCCAGT 59.963 55.000 0.00 0.0 36.67 4.00 R
2430 3065 0.481567 AGTAGCAGCCTATACCCGGA 59.518 55.000 0.73 0.0 0.00 5.14 R
3931 4566 1.878522 CGTACCATCTCCAGCGCAC 60.879 63.158 11.47 0.0 0.00 5.34 R
4886 7177 0.598065 ACGCTCAAGTTTTGCCATCC 59.402 50.000 0.00 0.0 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 7.231317 AGACTGGTCAATGATTTCTTAAAGCAA 59.769 33.333 3.51 0.00 40.53 3.91
72 73 5.704888 CAATCGGCAACAACCAGTTTATAA 58.295 37.500 0.00 0.00 38.74 0.98
96 97 5.497635 AATATATCAACATTGTGCACGCA 57.502 34.783 13.13 0.98 0.00 5.24
140 144 5.924475 AACAAGATACAACACTGTAGCAC 57.076 39.130 3.66 0.00 45.12 4.40
174 178 5.287674 TGGATTGAGCTCTCTTATTCAGG 57.712 43.478 16.19 0.00 0.00 3.86
191 195 9.410556 CTTATTCAGGTGAGGTGTTTAATTTTG 57.589 33.333 0.00 0.00 0.00 2.44
192 196 7.595819 ATTCAGGTGAGGTGTTTAATTTTGA 57.404 32.000 0.00 0.00 0.00 2.69
193 197 7.411486 TTCAGGTGAGGTGTTTAATTTTGAA 57.589 32.000 0.00 0.00 0.00 2.69
194 198 7.595819 TCAGGTGAGGTGTTTAATTTTGAAT 57.404 32.000 0.00 0.00 0.00 2.57
195 199 8.017418 TCAGGTGAGGTGTTTAATTTTGAATT 57.983 30.769 0.00 0.00 0.00 2.17
196 200 8.482128 TCAGGTGAGGTGTTTAATTTTGAATTT 58.518 29.630 0.00 0.00 0.00 1.82
217 221 9.346725 GAATTTAGTTCACTGGTCAATGATTTC 57.653 33.333 0.00 0.00 36.80 2.17
220 224 5.624159 AGTTCACTGGTCAATGATTTCTCA 58.376 37.500 0.00 0.00 35.41 3.27
262 266 8.818057 ACTTTATAAAATACATCAGTCTCGCAC 58.182 33.333 0.00 0.00 0.00 5.34
263 267 7.709269 TTATAAAATACATCAGTCTCGCACC 57.291 36.000 0.00 0.00 0.00 5.01
268 272 0.102120 CATCAGTCTCGCACCCTCTC 59.898 60.000 0.00 0.00 0.00 3.20
276 280 1.153489 CGCACCCTCTCATCACCTG 60.153 63.158 0.00 0.00 0.00 4.00
304 308 7.872113 AAAGGTAAATGCCAAAATCAAACAA 57.128 28.000 0.00 0.00 0.00 2.83
315 319 5.406175 CCAAAATCAAACAATGTAGCACCAG 59.594 40.000 0.00 0.00 0.00 4.00
335 339 8.873830 GCACCAGTATAATACATATGTCATCAC 58.126 37.037 12.68 5.62 0.00 3.06
369 374 4.645535 CCTCCCTACATATGTGTGGATTG 58.354 47.826 23.18 15.67 38.98 2.67
375 380 6.441274 CCTACATATGTGTGGATTGATTTGC 58.559 40.000 18.81 0.00 38.98 3.68
379 384 6.322969 ACATATGTGTGGATTGATTTGCAGAT 59.677 34.615 7.78 0.00 37.14 2.90
395 401 5.375417 TGCAGATAACACACCATCAAAAG 57.625 39.130 0.00 0.00 0.00 2.27
411 417 9.705290 ACCATCAAAAGACCACATTATAAAAAC 57.295 29.630 0.00 0.00 0.00 2.43
414 420 9.840427 ATCAAAAGACCACATTATAAAAACGAG 57.160 29.630 0.00 0.00 0.00 4.18
421 427 7.081976 ACCACATTATAAAAACGAGTTTGCTC 58.918 34.615 1.65 0.00 38.35 4.26
425 431 8.015658 ACATTATAAAAACGAGTTTGCTCACTC 58.984 33.333 1.65 5.93 41.71 3.51
427 433 4.537936 AAAAACGAGTTTGCTCACTCTC 57.462 40.909 12.34 1.17 41.09 3.20
436 442 0.390340 TGCTCACTCTCGTGCCATTC 60.390 55.000 0.00 0.00 40.99 2.67
437 443 1.416813 GCTCACTCTCGTGCCATTCG 61.417 60.000 0.00 0.00 40.99 3.34
445 451 2.601314 TCTCGTGCCATTCGATTTTACG 59.399 45.455 0.00 0.00 36.73 3.18
455 461 3.153676 TCGATTTTACGCGGAGATTCA 57.846 42.857 12.47 0.00 0.00 2.57
458 464 3.545633 GATTTTACGCGGAGATTCATGC 58.454 45.455 12.47 0.00 0.00 4.06
553 559 1.959985 AGATGAGAGCTGGACATACCG 59.040 52.381 0.00 0.00 42.61 4.02
556 562 2.176045 TGAGAGCTGGACATACCGAAA 58.824 47.619 0.00 0.00 42.61 3.46
558 564 3.007506 TGAGAGCTGGACATACCGAAAAA 59.992 43.478 0.00 0.00 42.61 1.94
559 565 3.600388 AGAGCTGGACATACCGAAAAAG 58.400 45.455 0.00 0.00 42.61 2.27
564 571 4.708601 CTGGACATACCGAAAAAGAAACG 58.291 43.478 0.00 0.00 42.61 3.60
578 585 4.675190 AAGAAACGCACTTCATCATCTG 57.325 40.909 0.00 0.00 0.00 2.90
589 596 5.856986 CACTTCATCATCTGTCTGCAAAAAG 59.143 40.000 0.00 0.00 0.00 2.27
590 597 5.766670 ACTTCATCATCTGTCTGCAAAAAGA 59.233 36.000 0.00 0.00 0.00 2.52
591 598 6.433404 ACTTCATCATCTGTCTGCAAAAAGAT 59.567 34.615 0.00 0.00 0.00 2.40
593 600 7.926674 TCATCATCTGTCTGCAAAAAGATAA 57.073 32.000 0.00 0.00 0.00 1.75
594 601 8.339344 TCATCATCTGTCTGCAAAAAGATAAA 57.661 30.769 0.00 0.00 0.00 1.40
595 602 8.963725 TCATCATCTGTCTGCAAAAAGATAAAT 58.036 29.630 0.00 0.00 0.00 1.40
606 613 8.613060 TGCAAAAAGATAAATAAACAATGCCA 57.387 26.923 0.00 0.00 0.00 4.92
626 633 1.296056 ACCATACAACGAAGCACGCC 61.296 55.000 0.00 0.00 46.94 5.68
627 634 1.058748 CATACAACGAAGCACGCCG 59.941 57.895 0.00 0.00 46.94 6.46
633 640 2.509336 CGAAGCACGCCGAATCCT 60.509 61.111 0.00 0.00 34.51 3.24
649 656 5.428253 CGAATCCTTCTGGGTTAGATTTCA 58.572 41.667 0.00 0.00 36.67 2.69
650 657 5.880332 CGAATCCTTCTGGGTTAGATTTCAA 59.120 40.000 0.00 0.00 36.67 2.69
674 682 8.689061 CAATCCTGAAAATTGACTGATCCAATA 58.311 33.333 0.00 0.00 36.43 1.90
678 686 9.525409 CCTGAAAATTGACTGATCCAATATTTC 57.475 33.333 14.75 14.75 35.16 2.17
716 886 7.145323 ACAAAATGTCAAGTCCCTATTTTTCG 58.855 34.615 0.00 0.00 30.88 3.46
718 888 3.078837 TGTCAAGTCCCTATTTTTCGGC 58.921 45.455 0.00 0.00 0.00 5.54
723 893 0.179468 TCCCTATTTTTCGGCGGGAG 59.821 55.000 7.21 0.00 38.95 4.30
728 898 2.702592 ATTTTTCGGCGGGAGTATGA 57.297 45.000 7.21 0.00 0.00 2.15
759 929 8.973835 TTTTATTTATGGCCTTGAACTTAACG 57.026 30.769 3.32 0.00 0.00 3.18
760 930 7.690952 TTATTTATGGCCTTGAACTTAACGT 57.309 32.000 3.32 0.00 0.00 3.99
761 931 6.584185 ATTTATGGCCTTGAACTTAACGTT 57.416 33.333 5.88 5.88 38.91 3.99
762 932 6.394025 TTTATGGCCTTGAACTTAACGTTT 57.606 33.333 5.91 0.00 35.56 3.60
763 933 4.929819 ATGGCCTTGAACTTAACGTTTT 57.070 36.364 5.91 0.00 35.56 2.43
764 934 4.722361 TGGCCTTGAACTTAACGTTTTT 57.278 36.364 5.91 0.00 35.56 1.94
788 958 9.640952 TTTTATCTTTTTCTCTTTTGAGGGAGA 57.359 29.630 0.00 0.00 46.22 3.71
789 959 8.854614 TTATCTTTTTCTCTTTTGAGGGAGAG 57.145 34.615 0.00 0.00 46.22 3.20
790 960 6.500589 TCTTTTTCTCTTTTGAGGGAGAGA 57.499 37.500 0.00 0.00 46.22 3.10
796 966 6.996180 TCTCTTTTGAGGGAGAGAACTTAA 57.004 37.500 0.86 0.00 43.90 1.85
801 971 4.252971 TGAGGGAGAGAACTTAACGTTG 57.747 45.455 11.99 0.00 35.56 4.10
814 984 4.496898 CGTTGAGCGTGTGAAAGC 57.503 55.556 0.00 0.00 35.54 3.51
874 1056 5.557136 CGATAGTCTCCGCATTTTGTTGATC 60.557 44.000 0.00 0.00 0.00 2.92
914 1096 7.934665 TGTCTGATTAGTAGGCAAAACAGTTTA 59.065 33.333 0.00 0.00 0.00 2.01
916 1098 7.934665 TCTGATTAGTAGGCAAAACAGTTTACA 59.065 33.333 0.00 0.00 0.00 2.41
925 1108 5.234116 GGCAAAACAGTTTACACTTCCATTG 59.766 40.000 0.00 0.00 0.00 2.82
963 1146 1.028905 CTCCCTCGTCTCTAAGCCAG 58.971 60.000 0.00 0.00 0.00 4.85
1061 1244 4.394712 CCCACTCCACACTCGCCC 62.395 72.222 0.00 0.00 0.00 6.13
1420 1619 2.490991 AGTCACTGGTTTCGTAAAGCC 58.509 47.619 6.94 0.00 38.07 4.35
1446 1645 5.063691 CGCTCCGTCTTATCCTGTATACTAG 59.936 48.000 4.17 0.32 0.00 2.57
1447 1646 5.939296 GCTCCGTCTTATCCTGTATACTAGT 59.061 44.000 0.00 0.00 0.00 2.57
1449 1648 7.605691 GCTCCGTCTTATCCTGTATACTAGTAA 59.394 40.741 6.70 0.00 0.00 2.24
1450 1649 9.153721 CTCCGTCTTATCCTGTATACTAGTAAG 57.846 40.741 6.70 0.00 0.00 2.34
1451 1650 8.654997 TCCGTCTTATCCTGTATACTAGTAAGT 58.345 37.037 6.70 0.00 39.91 2.24
1452 1651 9.282569 CCGTCTTATCCTGTATACTAGTAAGTT 57.717 37.037 6.70 0.00 37.15 2.66
1495 1709 1.229428 CATGACAACAGCAACGAGGT 58.771 50.000 0.00 0.00 0.00 3.85
1518 1733 6.128363 GGTCATCCCTAAAGAAAACAGTAACG 60.128 42.308 0.00 0.00 0.00 3.18
1598 1822 2.176055 CGGTGGAGTCGTCTCACG 59.824 66.667 11.73 8.71 44.19 4.35
1780 2224 3.684788 AGGTAGCGAACTTGCATACAAAG 59.315 43.478 0.00 0.00 34.74 2.77
2091 2715 7.083062 TGAGATATCCACAAATCCTGCTAAT 57.917 36.000 0.00 0.00 0.00 1.73
2103 2727 1.202687 CCTGCTAATCTCGCCCATGAA 60.203 52.381 0.00 0.00 0.00 2.57
2160 2793 0.032017 AGGTCCCTGATAACCTCGCT 60.032 55.000 0.00 0.00 42.28 4.93
2203 2836 4.634012 AACAACACCAATGAGTAGCCTA 57.366 40.909 0.00 0.00 0.00 3.93
2274 2909 4.441079 GCCGCTTATGGTCAGAGTACTAAA 60.441 45.833 0.00 0.00 0.00 1.85
2280 2915 8.713271 GCTTATGGTCAGAGTACTAAATAATGC 58.287 37.037 0.00 0.00 0.00 3.56
2318 2953 5.043248 GTCAACTGCATTTGTTTAGTTGCT 58.957 37.500 15.50 0.00 45.82 3.91
2362 2997 1.734465 CCTGCGACAGTCCATCTTTTC 59.266 52.381 0.00 0.00 0.00 2.29
2401 3036 7.662604 TTCTATTCTGTAGCATGCATATGTG 57.337 36.000 21.98 4.83 36.65 3.21
2448 3083 1.477295 GATCCGGGTATAGGCTGCTAC 59.523 57.143 0.00 0.00 0.00 3.58
2587 3222 9.807386 GTACTAAATAACTGTGCACTAGTTTTG 57.193 33.333 27.74 18.80 39.06 2.44
2639 3274 1.069668 GCCCTTTGATGCATCATTCCC 59.930 52.381 29.13 13.35 36.56 3.97
2803 3438 3.146066 GTGCTATTGACCCTGTTGAACA 58.854 45.455 0.00 0.00 0.00 3.18
2814 3449 3.009723 CCTGTTGAACATAAGTGCGGAT 58.990 45.455 0.00 0.00 0.00 4.18
2834 3469 6.373774 GCGGATATAAAGTACTACTCTGCCTA 59.626 42.308 0.00 0.00 0.00 3.93
2961 3596 0.896226 GGTCCTCCGCTACTGTTCTT 59.104 55.000 0.00 0.00 0.00 2.52
3013 3648 9.587772 TTAAGTAGAGCTAACAAGCTAAATCAG 57.412 33.333 0.00 0.00 46.36 2.90
3124 3759 1.326951 AACCCTTGGGTTGTGCACAC 61.327 55.000 21.56 14.55 0.00 3.82
3137 3772 1.151908 GCACACCCCACCCTGTTTA 59.848 57.895 0.00 0.00 0.00 2.01
3167 3802 6.982160 ATTCTTGACTGATCTCAGATAGCT 57.018 37.500 13.94 0.00 46.59 3.32
3191 3826 7.148356 GCTTGTCAATACATCATGAACTCAGAA 60.148 37.037 0.00 0.00 34.97 3.02
3209 3844 7.961351 ACTCAGAACCTCCAGATGATATTTAG 58.039 38.462 0.00 0.00 0.00 1.85
3215 3850 5.672194 ACCTCCAGATGATATTTAGGGTTGT 59.328 40.000 0.00 0.00 0.00 3.32
3216 3851 6.160459 ACCTCCAGATGATATTTAGGGTTGTT 59.840 38.462 0.00 0.00 0.00 2.83
3308 3943 6.449635 TTGGCAACTAAATATGCTAACCAG 57.550 37.500 0.00 0.00 42.20 4.00
3353 3988 7.334921 CCATGTACGGGTGTCTTTTTCTTATTA 59.665 37.037 0.00 0.00 0.00 0.98
3523 4158 4.337555 ACTGGCAATGTAAATCAGCATCTC 59.662 41.667 0.00 0.00 0.00 2.75
3554 4189 8.239038 TCAGTACTAATGCTTTATACAGCTCT 57.761 34.615 11.95 2.20 40.79 4.09
3744 4379 6.035866 CAGATCTTTTGTCTTGAGATTCTCCG 59.964 42.308 11.12 2.88 30.64 4.63
3880 4515 4.743644 GCTACTACTATAACTTTGGCCACG 59.256 45.833 3.88 1.29 0.00 4.94
3931 4566 4.436584 GCTATAGCACTTGTCTGCAACTTG 60.437 45.833 20.01 0.00 39.86 3.16
3955 4590 1.068588 GCTGGAGATGGTACGTGCATA 59.931 52.381 5.86 0.00 0.00 3.14
3990 4628 7.843490 TTGCACTATATGTCCTAGAACAAAC 57.157 36.000 0.00 0.00 31.81 2.93
4058 4696 4.813027 CTGTAAACAGCATGCCAAAAGAT 58.187 39.130 15.66 0.00 42.53 2.40
4079 4717 2.244117 TAGCTGCTTCGCCCTTCCTG 62.244 60.000 7.79 0.00 0.00 3.86
4113 4751 6.876257 CAGATATAATTAGGCTGTTCACCCTC 59.124 42.308 0.00 0.00 32.65 4.30
4245 6517 2.353109 GGCTGGTTTCTTGGCTTCAATC 60.353 50.000 0.00 0.00 0.00 2.67
4262 6534 7.360361 GCTTCAATCGGGTAATTACTTAATGG 58.640 38.462 15.05 4.61 0.00 3.16
4275 6547 4.245251 ACTTAATGGGACCATGTTACCC 57.755 45.455 4.30 10.84 43.51 3.69
4283 6555 6.404071 TGGGACCATGTTACCCATGTTACC 62.404 50.000 14.93 0.00 45.17 2.85
4287 6559 2.102070 TGTTACCCATGTTACCTGCG 57.898 50.000 0.00 0.00 0.00 5.18
4322 6594 3.242712 GTGTGCTTTGTTCAATCGTTTGG 59.757 43.478 6.39 0.00 33.44 3.28
4375 6649 1.827969 AGTTTCGGTCTCATGGAGGAG 59.172 52.381 0.00 0.00 36.21 3.69
4408 6682 0.469892 CCTTGGGCTTCCTTGTGGTT 60.470 55.000 0.00 0.00 34.23 3.67
4411 6685 0.555769 TGGGCTTCCTTGTGGTTTCT 59.444 50.000 0.00 0.00 34.23 2.52
4453 6727 0.957395 CACACCCCATCAGCACTGAC 60.957 60.000 1.71 0.00 43.11 3.51
4505 6779 1.267261 CATTCCTAGTCGGTAGCCTCG 59.733 57.143 0.00 0.00 0.00 4.63
4524 6798 2.094700 TCGTTCTCTGATGTTTAGCGCT 60.095 45.455 17.26 17.26 0.00 5.92
4527 6801 4.027295 CGTTCTCTGATGTTTAGCGCTAAG 60.027 45.833 27.32 16.31 0.00 2.18
4528 6802 4.983671 TCTCTGATGTTTAGCGCTAAGA 57.016 40.909 27.32 19.36 0.00 2.10
4529 6803 5.324784 TCTCTGATGTTTAGCGCTAAGAA 57.675 39.130 27.32 20.21 0.00 2.52
4530 6804 5.907207 TCTCTGATGTTTAGCGCTAAGAAT 58.093 37.500 27.32 23.46 0.00 2.40
4531 6805 5.750547 TCTCTGATGTTTAGCGCTAAGAATG 59.249 40.000 27.32 16.89 0.00 2.67
4532 6806 4.271049 TCTGATGTTTAGCGCTAAGAATGC 59.729 41.667 27.32 17.60 0.00 3.56
4548 6828 4.137543 AGAATGCGGTGACTTTCTTTTCT 58.862 39.130 0.00 0.00 31.93 2.52
4553 6833 2.548480 CGGTGACTTTCTTTTCTCCACC 59.452 50.000 0.00 0.00 39.20 4.61
4652 6932 4.635699 ACAATTTTCTACTCCCTCCGTT 57.364 40.909 0.00 0.00 0.00 4.44
4653 6933 4.576879 ACAATTTTCTACTCCCTCCGTTC 58.423 43.478 0.00 0.00 0.00 3.95
4655 6935 2.617840 TTTCTACTCCCTCCGTTCCT 57.382 50.000 0.00 0.00 0.00 3.36
4656 6936 3.744940 TTTCTACTCCCTCCGTTCCTA 57.255 47.619 0.00 0.00 0.00 2.94
4660 6940 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
4662 6942 6.379579 TCTACTCCCTCCGTTCCTAAATATT 58.620 40.000 0.00 0.00 0.00 1.28
4663 6943 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
4664 6944 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
4665 6945 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
4666 6946 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
4667 6947 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
4668 6948 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
4670 6950 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
4672 6952 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
4673 6953 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
4687 6967 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
4688 6968 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
4689 6969 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
4690 6970 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
4691 6971 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
4692 6972 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
4693 6973 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
4694 6974 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
4695 6975 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
4697 6977 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
4698 6978 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
4699 6979 6.590292 AGATTTCAACAAGTGACTACATACGG 59.410 38.462 0.00 0.00 35.39 4.02
4700 6980 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
4701 6981 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
4702 6982 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
4703 6983 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
4704 6984 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
4705 6985 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
4706 6986 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
4707 6987 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
4708 6988 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
4709 6989 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
4710 6990 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
4711 6991 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
4712 6992 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
4713 6993 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
4714 6994 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
4715 6995 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
4716 6996 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
4717 6997 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
4718 6998 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
4719 6999 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
4720 7000 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
4721 7001 5.295292 CGGAGCAAAATGAGTGAATCTACAT 59.705 40.000 0.00 0.00 0.00 2.29
4722 7002 6.183360 CGGAGCAAAATGAGTGAATCTACATT 60.183 38.462 0.00 0.00 34.99 2.71
4723 7003 7.192232 GGAGCAAAATGAGTGAATCTACATTC 58.808 38.462 0.00 0.00 39.24 2.67
4724 7004 7.066766 GGAGCAAAATGAGTGAATCTACATTCT 59.933 37.037 0.00 0.00 39.49 2.40
4725 7005 9.102757 GAGCAAAATGAGTGAATCTACATTCTA 57.897 33.333 0.00 0.00 39.49 2.10
4726 7006 9.453572 AGCAAAATGAGTGAATCTACATTCTAA 57.546 29.630 0.00 0.00 39.49 2.10
4754 7034 7.956328 ATGTCTATATACATCCGTATGTGGT 57.044 36.000 3.56 0.00 45.99 4.16
4756 7036 8.866970 TGTCTATATACATCCGTATGTGGTAA 57.133 34.615 3.56 0.00 45.99 2.85
4757 7037 9.470399 TGTCTATATACATCCGTATGTGGTAAT 57.530 33.333 3.56 0.00 45.99 1.89
4758 7038 9.947669 GTCTATATACATCCGTATGTGGTAATC 57.052 37.037 3.56 0.00 45.99 1.75
4759 7039 9.128404 TCTATATACATCCGTATGTGGTAATCC 57.872 37.037 3.56 0.00 45.99 3.01
4760 7040 7.727578 ATATACATCCGTATGTGGTAATCCA 57.272 36.000 3.56 0.00 45.99 3.41
4761 7041 4.974645 ACATCCGTATGTGGTAATCCAT 57.025 40.909 0.00 0.00 44.79 3.41
4762 7042 5.304686 ACATCCGTATGTGGTAATCCATT 57.695 39.130 0.00 0.00 44.79 3.16
4763 7043 5.690865 ACATCCGTATGTGGTAATCCATTT 58.309 37.500 0.00 0.00 44.79 2.32
4764 7044 5.530915 ACATCCGTATGTGGTAATCCATTTG 59.469 40.000 0.00 0.00 44.79 2.32
4765 7045 5.360649 TCCGTATGTGGTAATCCATTTGA 57.639 39.130 0.00 0.00 46.20 2.69
4766 7046 5.746284 TCCGTATGTGGTAATCCATTTGAA 58.254 37.500 0.00 0.00 46.20 2.69
4767 7047 6.181190 TCCGTATGTGGTAATCCATTTGAAA 58.819 36.000 0.00 0.00 46.20 2.69
4768 7048 6.094325 TCCGTATGTGGTAATCCATTTGAAAC 59.906 38.462 0.00 0.00 46.20 2.78
4769 7049 6.262601 CGTATGTGGTAATCCATTTGAAACC 58.737 40.000 0.00 0.00 46.20 3.27
4770 7050 6.094881 CGTATGTGGTAATCCATTTGAAACCT 59.905 38.462 0.00 0.00 46.20 3.50
4771 7051 5.975693 TGTGGTAATCCATTTGAAACCTC 57.024 39.130 0.00 0.00 46.20 3.85
4772 7052 5.640147 TGTGGTAATCCATTTGAAACCTCT 58.360 37.500 0.00 0.00 46.20 3.69
4777 7057 9.148879 TGGTAATCCATTTGAAACCTCTAAAAA 57.851 29.630 0.00 0.00 39.03 1.94
4781 7061 7.889873 TCCATTTGAAACCTCTAAAAAGACA 57.110 32.000 0.00 0.00 0.00 3.41
4782 7062 8.299990 TCCATTTGAAACCTCTAAAAAGACAA 57.700 30.769 0.00 0.00 0.00 3.18
4784 7064 9.546428 CCATTTGAAACCTCTAAAAAGACAAAT 57.454 29.630 0.00 0.00 36.38 2.32
4800 7080 6.309389 AGACAAATATTTAGGAACGGAGGT 57.691 37.500 0.00 0.00 0.00 3.85
4805 7085 8.419442 ACAAATATTTAGGAACGGAGGTAGTAG 58.581 37.037 0.00 0.00 0.00 2.57
4806 7086 8.419442 CAAATATTTAGGAACGGAGGTAGTAGT 58.581 37.037 0.00 0.00 0.00 2.73
4807 7087 9.646522 AAATATTTAGGAACGGAGGTAGTAGTA 57.353 33.333 0.00 0.00 0.00 1.82
4809 7089 6.759497 TTTAGGAACGGAGGTAGTAGTAAC 57.241 41.667 0.00 0.00 0.00 2.50
4819 7110 6.971184 CGGAGGTAGTAGTAACTGTTTACATG 59.029 42.308 0.00 0.00 40.25 3.21
4830 7121 3.441572 ACTGTTTACATGCTGAGATTGGC 59.558 43.478 0.00 0.00 0.00 4.52
4848 7139 2.260869 CCCCAAGGTTGACGCTGTG 61.261 63.158 0.00 0.00 0.00 3.66
4857 7148 0.244178 TTGACGCTGTGTGCCGTATA 59.756 50.000 0.00 0.00 38.78 1.47
4858 7149 0.457166 TGACGCTGTGTGCCGTATAC 60.457 55.000 0.00 0.00 38.78 1.47
4883 7174 6.015603 CCTTGCTCTCTGGAGAAAAGAAAAAT 60.016 38.462 17.25 0.00 41.86 1.82
4884 7175 6.966534 TGCTCTCTGGAGAAAAGAAAAATT 57.033 33.333 1.86 0.00 41.86 1.82
4885 7176 8.463930 TTGCTCTCTGGAGAAAAGAAAAATTA 57.536 30.769 1.86 0.00 41.86 1.40
4886 7177 8.103948 TGCTCTCTGGAGAAAAGAAAAATTAG 57.896 34.615 1.86 0.00 41.86 1.73
4924 7216 4.645136 AGCGTTTATACTGATCTCCTGTGA 59.355 41.667 0.00 0.00 0.00 3.58
5012 7667 0.895530 TCAAGGTAACGCTCCTCAGG 59.104 55.000 0.00 0.00 46.39 3.86
5060 7718 3.537580 TGTGCCGAACTTTCTACTGTTT 58.462 40.909 0.00 0.00 0.00 2.83
5077 7735 4.142902 ACTGTTTGAAGAACACTGAACACG 60.143 41.667 0.00 0.00 0.00 4.49
5113 7771 9.214957 CAAAAAGTACTAGTACCATTCACATGA 57.785 33.333 25.97 0.00 36.75 3.07
5130 7788 2.927856 ACACATGCCCCTCCGTGA 60.928 61.111 0.00 0.00 33.56 4.35
5149 7807 2.620585 TGATCACCGTCATTTTGTTGCA 59.379 40.909 0.00 0.00 0.00 4.08
5174 7832 5.437289 TGTGCATTTTCCTAACTGACTTG 57.563 39.130 0.00 0.00 0.00 3.16
5182 7840 3.973657 TCCTAACTGACTTGTTCACGTC 58.026 45.455 3.08 3.08 0.00 4.34
5225 7883 2.151172 GCAAAGCGCAAAAAGACTAACG 59.849 45.455 11.47 0.00 41.79 3.18
5226 7884 3.613563 CAAAGCGCAAAAAGACTAACGA 58.386 40.909 11.47 0.00 0.00 3.85
5227 7885 3.521524 AAGCGCAAAAAGACTAACGAG 57.478 42.857 11.47 0.00 0.00 4.18
5228 7886 2.480845 AGCGCAAAAAGACTAACGAGT 58.519 42.857 11.47 0.00 39.20 4.18
5229 7887 3.645884 AGCGCAAAAAGACTAACGAGTA 58.354 40.909 11.47 0.00 35.45 2.59
5230 7888 4.053295 AGCGCAAAAAGACTAACGAGTAA 58.947 39.130 11.47 0.00 35.45 2.24
5231 7889 4.084693 AGCGCAAAAAGACTAACGAGTAAC 60.085 41.667 11.47 0.00 35.45 2.50
5266 7924 3.063452 CGACATGCAAAGGCTAACGTTAT 59.937 43.478 8.76 0.00 41.91 1.89
5272 7930 3.727970 GCAAAGGCTAACGTTATCACAGC 60.728 47.826 8.76 9.93 36.96 4.40
5293 7951 6.128445 ACAGCATAAAGATACGATTAGCATGC 60.128 38.462 10.51 10.51 0.00 4.06
5295 7953 6.596888 AGCATAAAGATACGATTAGCATGCAT 59.403 34.615 21.98 5.15 33.14 3.96
5296 7954 7.120285 AGCATAAAGATACGATTAGCATGCATT 59.880 33.333 21.98 1.90 33.14 3.56
5297 7955 7.217636 GCATAAAGATACGATTAGCATGCATTG 59.782 37.037 21.98 11.88 0.00 2.82
5298 7956 6.624352 AAAGATACGATTAGCATGCATTGT 57.376 33.333 21.98 17.05 0.00 2.71
5322 7980 1.281656 CTTCGGTTGGCGTGAAACC 59.718 57.895 6.11 6.11 43.11 3.27
5444 8109 1.860326 GCACACACACAAAAATGCTCC 59.140 47.619 0.00 0.00 0.00 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 3.871594 GACCAGTCTAAATCATGAACCGG 59.128 47.826 0.00 0.00 0.00 5.28
13 14 6.599244 TCATTGACCAGTCTAAATCATGAACC 59.401 38.462 0.00 0.00 0.00 3.62
17 18 8.900781 AGAAATCATTGACCAGTCTAAATCATG 58.099 33.333 0.00 0.00 0.00 3.07
48 49 0.031994 AACTGGTTGTTGCCGATTGC 59.968 50.000 0.00 0.00 37.52 3.56
51 52 5.968528 TTTATAAACTGGTTGTTGCCGAT 57.031 34.783 0.00 0.00 39.13 4.18
72 73 6.253298 GTGCGTGCACAATGTTGATATATTTT 59.747 34.615 19.45 0.00 45.53 1.82
89 90 1.374631 GAGGTGATGAGTGCGTGCA 60.375 57.895 0.00 0.00 0.00 4.57
115 116 7.193595 GTGCTACAGTGTTGTATCTTGTTTTT 58.806 34.615 0.00 0.00 39.00 1.94
140 144 5.704515 AGAGCTCAATCCAAAATCATATCGG 59.295 40.000 17.77 0.00 0.00 4.18
191 195 9.346725 GAAATCATTGACCAGTGAACTAAATTC 57.653 33.333 0.00 0.00 37.88 2.17
192 196 9.082313 AGAAATCATTGACCAGTGAACTAAATT 57.918 29.630 0.00 0.00 30.81 1.82
193 197 8.641498 AGAAATCATTGACCAGTGAACTAAAT 57.359 30.769 0.00 0.00 30.81 1.40
194 198 7.719193 TGAGAAATCATTGACCAGTGAACTAAA 59.281 33.333 0.00 0.00 30.81 1.85
195 199 7.223584 TGAGAAATCATTGACCAGTGAACTAA 58.776 34.615 0.00 0.00 30.81 2.24
196 200 6.768483 TGAGAAATCATTGACCAGTGAACTA 58.232 36.000 0.00 0.00 30.81 2.24
217 221 4.164822 AGTTGTTGCGGATTGATTTGAG 57.835 40.909 0.00 0.00 0.00 3.02
220 224 9.482627 TTTTATAAAGTTGTTGCGGATTGATTT 57.517 25.926 0.00 0.00 0.00 2.17
229 233 9.554724 ACTGATGTATTTTATAAAGTTGTTGCG 57.445 29.630 0.00 0.00 0.00 4.85
248 252 0.613292 AGAGGGTGCGAGACTGATGT 60.613 55.000 0.00 0.00 0.00 3.06
262 266 3.341823 CTTTTGTCAGGTGATGAGAGGG 58.658 50.000 0.00 0.00 39.07 4.30
263 267 3.244700 ACCTTTTGTCAGGTGATGAGAGG 60.245 47.826 0.00 0.00 46.22 3.69
276 280 7.489574 TTGATTTTGGCATTTACCTTTTGTC 57.510 32.000 0.00 0.00 0.00 3.18
335 339 5.615925 ATGTAGGGAGGCTACTTTTACAG 57.384 43.478 12.42 0.00 0.00 2.74
343 347 3.006967 CCACACATATGTAGGGAGGCTAC 59.993 52.174 16.35 0.00 36.72 3.58
344 348 3.116900 TCCACACATATGTAGGGAGGCTA 60.117 47.826 18.83 2.62 36.72 3.93
369 374 5.565592 TGATGGTGTGTTATCTGCAAATC 57.434 39.130 0.00 0.00 0.00 2.17
375 380 5.473162 TGGTCTTTTGATGGTGTGTTATCTG 59.527 40.000 0.00 0.00 0.00 2.90
379 384 4.527944 TGTGGTCTTTTGATGGTGTGTTA 58.472 39.130 0.00 0.00 0.00 2.41
395 401 7.081976 AGCAAACTCGTTTTTATAATGTGGTC 58.918 34.615 0.00 0.00 0.00 4.02
425 431 2.845764 GCGTAAAATCGAATGGCACGAG 60.846 50.000 12.23 0.00 42.81 4.18
427 433 1.452717 GCGTAAAATCGAATGGCACG 58.547 50.000 0.00 0.00 0.00 5.34
436 442 3.787826 CATGAATCTCCGCGTAAAATCG 58.212 45.455 4.92 0.00 0.00 3.34
437 443 3.248602 AGCATGAATCTCCGCGTAAAATC 59.751 43.478 4.92 0.00 0.00 2.17
490 496 9.987272 TGTCTCATCTTAATGACATTAGTATGG 57.013 33.333 20.61 15.19 36.98 2.74
536 542 1.847328 TTCGGTATGTCCAGCTCTCA 58.153 50.000 0.00 0.00 35.57 3.27
537 543 2.961526 TTTCGGTATGTCCAGCTCTC 57.038 50.000 0.00 0.00 35.57 3.20
539 545 3.596214 TCTTTTTCGGTATGTCCAGCTC 58.404 45.455 0.00 0.00 35.57 4.09
544 550 3.058777 TGCGTTTCTTTTTCGGTATGTCC 60.059 43.478 0.00 0.00 0.00 4.02
553 559 6.087291 CAGATGATGAAGTGCGTTTCTTTTTC 59.913 38.462 2.29 0.00 0.00 2.29
556 562 4.516698 ACAGATGATGAAGTGCGTTTCTTT 59.483 37.500 2.29 0.00 0.00 2.52
558 564 3.668447 ACAGATGATGAAGTGCGTTTCT 58.332 40.909 2.29 0.00 0.00 2.52
559 565 3.681897 AGACAGATGATGAAGTGCGTTTC 59.318 43.478 0.00 0.00 0.00 2.78
564 571 2.353323 TGCAGACAGATGATGAAGTGC 58.647 47.619 0.00 0.00 34.83 4.40
578 585 9.745323 GCATTGTTTATTTATCTTTTTGCAGAC 57.255 29.630 0.00 0.00 0.00 3.51
589 596 9.593134 TTGTATGGTTGGCATTGTTTATTTATC 57.407 29.630 0.00 0.00 0.00 1.75
590 597 9.377312 GTTGTATGGTTGGCATTGTTTATTTAT 57.623 29.630 0.00 0.00 0.00 1.40
591 598 7.542477 CGTTGTATGGTTGGCATTGTTTATTTA 59.458 33.333 0.00 0.00 0.00 1.40
593 600 5.866633 CGTTGTATGGTTGGCATTGTTTATT 59.133 36.000 0.00 0.00 0.00 1.40
594 601 5.184096 TCGTTGTATGGTTGGCATTGTTTAT 59.816 36.000 0.00 0.00 0.00 1.40
595 602 4.519350 TCGTTGTATGGTTGGCATTGTTTA 59.481 37.500 0.00 0.00 0.00 2.01
602 609 0.878416 GCTTCGTTGTATGGTTGGCA 59.122 50.000 0.00 0.00 0.00 4.92
603 610 0.878416 TGCTTCGTTGTATGGTTGGC 59.122 50.000 0.00 0.00 0.00 4.52
606 613 0.515564 GCGTGCTTCGTTGTATGGTT 59.484 50.000 4.16 0.00 42.13 3.67
612 619 1.897398 GATTCGGCGTGCTTCGTTGT 61.897 55.000 6.85 0.00 42.13 3.32
626 633 7.254932 GATTGAAATCTAACCCAGAAGGATTCG 60.255 40.741 0.00 0.00 40.21 3.34
627 634 7.013750 GGATTGAAATCTAACCCAGAAGGATTC 59.986 40.741 3.21 0.00 39.34 2.52
633 640 6.387192 TCAGGATTGAAATCTAACCCAGAA 57.613 37.500 3.21 0.00 36.67 3.02
649 656 7.729124 ATTGGATCAGTCAATTTTCAGGATT 57.271 32.000 0.00 0.00 31.49 3.01
650 657 9.430399 AATATTGGATCAGTCAATTTTCAGGAT 57.570 29.630 0.00 0.00 36.40 3.24
660 667 9.513906 TGTGTTAAGAAATATTGGATCAGTCAA 57.486 29.630 0.00 0.00 0.00 3.18
662 669 9.774742 GTTGTGTTAAGAAATATTGGATCAGTC 57.225 33.333 0.00 0.00 0.00 3.51
663 670 9.520515 AGTTGTGTTAAGAAATATTGGATCAGT 57.479 29.630 0.00 0.00 0.00 3.41
678 686 9.567848 ACTTGACATTTTGTAAGTTGTGTTAAG 57.432 29.630 0.00 0.00 38.41 1.85
716 886 7.448748 AATAAAATTATGTCATACTCCCGCC 57.551 36.000 0.00 0.00 0.00 6.13
762 932 9.640952 TCTCCCTCAAAAGAGAAAAAGATAAAA 57.359 29.630 0.00 0.00 36.22 1.52
763 933 9.289782 CTCTCCCTCAAAAGAGAAAAAGATAAA 57.710 33.333 0.00 0.00 41.28 1.40
764 934 8.660435 TCTCTCCCTCAAAAGAGAAAAAGATAA 58.340 33.333 0.00 0.00 43.78 1.75
765 935 8.207350 TCTCTCCCTCAAAAGAGAAAAAGATA 57.793 34.615 0.00 0.00 43.78 1.98
766 936 7.084268 TCTCTCCCTCAAAAGAGAAAAAGAT 57.916 36.000 0.00 0.00 43.78 2.40
767 937 6.500589 TCTCTCCCTCAAAAGAGAAAAAGA 57.499 37.500 0.00 0.00 43.78 2.52
773 943 6.516860 CGTTAAGTTCTCTCCCTCAAAAGAGA 60.517 42.308 0.00 0.00 44.77 3.10
774 944 5.635700 CGTTAAGTTCTCTCCCTCAAAAGAG 59.364 44.000 0.00 0.00 40.34 2.85
775 945 5.070047 ACGTTAAGTTCTCTCCCTCAAAAGA 59.930 40.000 0.00 0.00 0.00 2.52
776 946 5.298347 ACGTTAAGTTCTCTCCCTCAAAAG 58.702 41.667 0.00 0.00 0.00 2.27
777 947 5.286267 ACGTTAAGTTCTCTCCCTCAAAA 57.714 39.130 0.00 0.00 0.00 2.44
778 948 4.950205 ACGTTAAGTTCTCTCCCTCAAA 57.050 40.909 0.00 0.00 0.00 2.69
779 949 4.342951 TCAACGTTAAGTTCTCTCCCTCAA 59.657 41.667 0.00 0.00 42.02 3.02
780 950 3.893200 TCAACGTTAAGTTCTCTCCCTCA 59.107 43.478 0.00 0.00 42.02 3.86
781 951 4.487019 CTCAACGTTAAGTTCTCTCCCTC 58.513 47.826 0.00 0.00 42.02 4.30
782 952 3.306156 GCTCAACGTTAAGTTCTCTCCCT 60.306 47.826 0.00 0.00 42.02 4.20
783 953 2.994578 GCTCAACGTTAAGTTCTCTCCC 59.005 50.000 0.00 0.00 42.02 4.30
784 954 2.662156 CGCTCAACGTTAAGTTCTCTCC 59.338 50.000 0.00 0.00 42.02 3.71
785 955 3.955887 CGCTCAACGTTAAGTTCTCTC 57.044 47.619 0.00 0.00 42.02 3.20
801 971 0.739813 ATACCGGCTTTCACACGCTC 60.740 55.000 0.00 0.00 0.00 5.03
809 979 4.875561 AGAAGATAGGATACCGGCTTTC 57.124 45.455 0.00 0.00 37.17 2.62
814 984 6.224584 GGAAAAGAAGAAGATAGGATACCGG 58.775 44.000 0.00 0.00 37.17 5.28
914 1096 6.610075 ATTGCCTATTTTCAATGGAAGTGT 57.390 33.333 0.00 0.00 33.82 3.55
944 1127 1.028905 CTGGCTTAGAGACGAGGGAG 58.971 60.000 0.00 0.00 0.00 4.30
995 1178 2.705826 CGAGGCTGAGCATTTCGC 59.294 61.111 6.82 0.00 42.91 4.70
1061 1244 2.196229 AGAGGGGTCTCGATCGGG 59.804 66.667 16.41 13.07 44.47 5.14
1106 1289 3.151022 GCGGTGAGGAGGAGGAGG 61.151 72.222 0.00 0.00 0.00 4.30
1234 1429 2.982130 GGTGACGCCTGAGGACAT 59.018 61.111 0.65 0.00 0.00 3.06
1360 1559 5.195379 GCGCTAGATAAACGGTAACATTTG 58.805 41.667 0.00 0.00 0.00 2.32
1365 1564 2.454055 ACGCGCTAGATAAACGGTAAC 58.546 47.619 5.73 0.00 0.00 2.50
1420 1619 1.364171 CAGGATAAGACGGAGCGGG 59.636 63.158 0.00 0.00 0.00 6.13
1446 1645 9.913451 CTGTTACATCGTACTAGTAGAACTTAC 57.087 37.037 1.87 0.00 0.00 2.34
1447 1646 9.658799 ACTGTTACATCGTACTAGTAGAACTTA 57.341 33.333 1.87 0.00 0.00 2.24
1449 1648 9.658799 TTACTGTTACATCGTACTAGTAGAACT 57.341 33.333 1.87 0.00 0.00 3.01
1450 1649 9.695884 GTTACTGTTACATCGTACTAGTAGAAC 57.304 37.037 1.87 2.55 0.00 3.01
1451 1650 9.435688 TGTTACTGTTACATCGTACTAGTAGAA 57.564 33.333 1.87 0.00 0.00 2.10
1452 1651 9.605275 ATGTTACTGTTACATCGTACTAGTAGA 57.395 33.333 1.87 3.85 30.65 2.59
1453 1652 9.647679 CATGTTACTGTTACATCGTACTAGTAG 57.352 37.037 9.29 0.00 34.11 2.57
1454 1653 9.382275 TCATGTTACTGTTACATCGTACTAGTA 57.618 33.333 9.29 0.00 34.11 1.82
1455 1654 8.180267 GTCATGTTACTGTTACATCGTACTAGT 58.820 37.037 9.29 0.00 34.11 2.57
1459 1658 7.115236 TGTTGTCATGTTACTGTTACATCGTAC 59.885 37.037 9.29 8.81 34.11 3.67
1495 1709 6.761312 TCGTTACTGTTTTCTTTAGGGATGA 58.239 36.000 0.00 0.00 0.00 2.92
1518 1733 0.539986 TTCGGTATTGCCCTGGTCTC 59.460 55.000 0.00 0.00 0.00 3.36
1581 1805 2.126417 AACGTGAGACGACTCCACCG 62.126 60.000 12.30 13.16 46.05 4.94
1598 1822 6.472163 CACACAAACTCTATCACCAACAAAAC 59.528 38.462 0.00 0.00 0.00 2.43
1752 2123 5.986004 ATGCAAGTTCGCTACCTATTTAC 57.014 39.130 0.00 0.00 0.00 2.01
1780 2224 6.522946 AGGTTTCTCTTTCCTACAGTGTTAC 58.477 40.000 0.00 0.00 0.00 2.50
1985 2609 9.201989 CAGCCTATACCCAGATCATAAATACTA 57.798 37.037 0.00 0.00 0.00 1.82
2103 2727 0.037303 CACCAGATTCCACTGCCAGT 59.963 55.000 0.00 0.00 36.67 4.00
2160 2793 4.251543 ACAGTCACGTTCATACACATGA 57.748 40.909 0.00 0.00 39.47 3.07
2253 2888 8.916654 CATTATTTAGTACTCTGACCATAAGCG 58.083 37.037 0.00 0.00 0.00 4.68
2274 2909 5.163550 TGACTAGAACACTAGTGCGCATTAT 60.164 40.000 22.90 9.29 44.37 1.28
2280 2915 3.914966 CAGTTGACTAGAACACTAGTGCG 59.085 47.826 22.90 8.67 44.37 5.34
2333 2968 0.745845 ACTGTCGCAGGAATGATGCC 60.746 55.000 10.80 0.00 40.67 4.40
2362 2997 8.417780 ACAGAATAGAATTCATCTTTCACTCG 57.582 34.615 8.44 0.00 39.71 4.18
2430 3065 0.481567 AGTAGCAGCCTATACCCGGA 59.518 55.000 0.73 0.00 0.00 5.14
2474 3109 5.413309 ACTTTCAGTCTCTCATCCGAAAT 57.587 39.130 0.00 0.00 0.00 2.17
2587 3222 8.557029 AGCAACTAAACAAATACAGTTGACTAC 58.443 33.333 15.44 0.52 46.94 2.73
2639 3274 3.955429 CAAAAGATGGACTGTCGCG 57.045 52.632 0.00 0.00 0.00 5.87
2803 3438 9.517868 AGAGTAGTACTTTATATCCGCACTTAT 57.482 33.333 0.00 0.00 0.00 1.73
2814 3449 9.956640 GGAGTATAGGCAGAGTAGTACTTTATA 57.043 37.037 0.00 1.13 0.00 0.98
3124 3759 5.719563 AGAATAAATTGTAAACAGGGTGGGG 59.280 40.000 0.00 0.00 0.00 4.96
3137 3772 9.902684 ATCTGAGATCAGTCAAGAATAAATTGT 57.097 29.630 9.56 0.00 44.12 2.71
3167 3802 7.119699 GGTTCTGAGTTCATGATGTATTGACAA 59.880 37.037 0.00 0.00 39.59 3.18
3191 3826 5.672194 ACAACCCTAAATATCATCTGGAGGT 59.328 40.000 0.00 0.00 0.00 3.85
3209 3844 7.755373 GCTTGAATTAATTGAGTAGAACAACCC 59.245 37.037 5.17 0.00 0.00 4.11
3215 3850 9.066892 ACTTGTGCTTGAATTAATTGAGTAGAA 57.933 29.630 5.17 6.96 0.00 2.10
3216 3851 8.506437 CACTTGTGCTTGAATTAATTGAGTAGA 58.494 33.333 5.17 0.00 0.00 2.59
3308 3943 5.762045 CATGGCTAATTGGCTATGTTACAC 58.238 41.667 25.60 3.48 43.18 2.90
3353 3988 8.340618 AGTGTCTATATGAAGTTGCACATTTT 57.659 30.769 0.00 0.00 0.00 1.82
3504 4139 3.313526 ACCGAGATGCTGATTTACATTGC 59.686 43.478 0.00 0.00 0.00 3.56
3523 4158 6.903883 ATAAAGCATTAGTACTGAACACCG 57.096 37.500 5.39 0.00 0.00 4.94
3744 4379 8.345565 ACTCGATAATGCCATAGAAAATGAAAC 58.654 33.333 0.00 0.00 0.00 2.78
3931 4566 1.878522 CGTACCATCTCCAGCGCAC 60.879 63.158 11.47 0.00 0.00 5.34
3967 4605 7.182817 AGTTTGTTCTAGGACATATAGTGCA 57.817 36.000 4.23 0.00 41.69 4.57
3990 4628 6.075205 GCAGATTATGTTGCGCAAGATAAAAG 60.075 38.462 39.45 32.46 39.13 2.27
4046 4684 4.119442 AGCAGCTAAATCTTTTGGCATG 57.881 40.909 10.33 7.07 0.00 4.06
4079 4717 6.091441 CAGCCTAATTATATCTGCTTTCGTCC 59.909 42.308 0.00 0.00 0.00 4.79
4245 6517 5.038651 TGGTCCCATTAAGTAATTACCCG 57.961 43.478 12.05 0.00 0.00 5.28
4275 6547 0.808755 GGGGAAACGCAGGTAACATG 59.191 55.000 0.00 0.00 43.99 3.21
4276 6548 3.259592 GGGGAAACGCAGGTAACAT 57.740 52.632 0.00 0.00 43.99 2.71
4277 6549 4.804806 GGGGAAACGCAGGTAACA 57.195 55.556 0.00 0.00 43.99 2.41
4287 6559 1.620822 AGCACACTGAATGGGGAAAC 58.379 50.000 0.00 0.00 29.34 2.78
4322 6594 6.624352 ATGCATGTACCTGAACAATATGAC 57.376 37.500 0.00 0.00 32.02 3.06
4408 6682 3.234630 AAGTGCCGCGGCTACAGAA 62.235 57.895 45.79 26.18 42.51 3.02
4411 6685 2.829043 CTACAAGTGCCGCGGCTACA 62.829 60.000 45.79 27.80 42.51 2.74
4453 6727 4.142469 GGAACGGTTAAATTGTCATCCAGG 60.142 45.833 0.00 0.00 0.00 4.45
4505 6779 5.103000 TCTTAGCGCTAAACATCAGAGAAC 58.897 41.667 28.44 0.00 0.00 3.01
4524 6798 5.763204 AGAAAAGAAAGTCACCGCATTCTTA 59.237 36.000 0.00 0.00 40.28 2.10
4527 6801 4.467735 GAGAAAAGAAAGTCACCGCATTC 58.532 43.478 0.00 0.00 0.00 2.67
4528 6802 3.253432 GGAGAAAAGAAAGTCACCGCATT 59.747 43.478 0.00 0.00 0.00 3.56
4529 6803 2.814336 GGAGAAAAGAAAGTCACCGCAT 59.186 45.455 0.00 0.00 0.00 4.73
4530 6804 2.218603 GGAGAAAAGAAAGTCACCGCA 58.781 47.619 0.00 0.00 0.00 5.69
4531 6805 2.031944 GTGGAGAAAAGAAAGTCACCGC 60.032 50.000 0.00 0.00 0.00 5.68
4532 6806 2.548480 GGTGGAGAAAAGAAAGTCACCG 59.452 50.000 0.00 0.00 34.71 4.94
4533 6807 3.565902 CAGGTGGAGAAAAGAAAGTCACC 59.434 47.826 0.00 0.00 42.31 4.02
4534 6808 4.451900 TCAGGTGGAGAAAAGAAAGTCAC 58.548 43.478 0.00 0.00 0.00 3.67
4536 6810 5.126779 AGTTCAGGTGGAGAAAAGAAAGTC 58.873 41.667 0.00 0.00 0.00 3.01
4537 6811 5.117406 AGTTCAGGTGGAGAAAAGAAAGT 57.883 39.130 0.00 0.00 0.00 2.66
4538 6812 5.009110 GGAAGTTCAGGTGGAGAAAAGAAAG 59.991 44.000 5.01 0.00 0.00 2.62
4548 6828 1.001974 CATGTCGGAAGTTCAGGTGGA 59.998 52.381 5.01 0.00 0.00 4.02
4553 6833 4.988540 TCTTGTTACATGTCGGAAGTTCAG 59.011 41.667 0.00 0.16 0.00 3.02
4662 6942 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
4663 6943 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
4664 6944 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
4665 6945 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
4666 6946 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
4667 6947 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
4668 6948 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
4670 6950 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
4672 6952 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
4673 6953 7.201444 CCGTATGTAGTCACTTGTTGAAATCTC 60.201 40.741 0.00 0.00 35.39 2.75
4675 6955 6.588756 TCCGTATGTAGTCACTTGTTGAAATC 59.411 38.462 0.00 0.00 35.39 2.17
4677 6957 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
4678 6958 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
4679 6959 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
4680 6960 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
4681 6961 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
4682 6962 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
4683 6963 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
4684 6964 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
4685 6965 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
4686 6966 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
4687 6967 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
4688 6968 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
4689 6969 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
4690 6970 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
4691 6971 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
4692 6972 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
4693 6973 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
4694 6974 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
4695 6975 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
4696 6976 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
4697 6977 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
4698 6978 6.690194 ATGTAGATTCACTCATTTTGCTCC 57.310 37.500 0.00 0.00 0.00 4.70
4699 6979 7.983307 AGAATGTAGATTCACTCATTTTGCTC 58.017 34.615 14.46 0.00 40.59 4.26
4700 6980 7.934855 AGAATGTAGATTCACTCATTTTGCT 57.065 32.000 14.46 0.00 40.59 3.91
4728 7008 9.642343 ACCACATACGGATGTATATAGACATAT 57.358 33.333 14.23 5.08 44.82 1.78
4730 7010 7.956328 ACCACATACGGATGTATATAGACAT 57.044 36.000 14.23 12.70 44.82 3.06
4731 7011 8.866970 TTACCACATACGGATGTATATAGACA 57.133 34.615 14.23 2.07 44.82 3.41
4732 7012 9.947669 GATTACCACATACGGATGTATATAGAC 57.052 37.037 14.23 0.00 44.82 2.59
4733 7013 9.128404 GGATTACCACATACGGATGTATATAGA 57.872 37.037 14.23 0.00 44.82 1.98
4734 7014 8.909923 TGGATTACCACATACGGATGTATATAG 58.090 37.037 14.23 0.00 44.82 1.31
4735 7015 8.826293 TGGATTACCACATACGGATGTATATA 57.174 34.615 14.23 3.33 44.82 0.86
4736 7016 7.727578 TGGATTACCACATACGGATGTATAT 57.272 36.000 14.23 4.37 44.82 0.86
4752 7032 9.639601 CTTTTTAGAGGTTTCAAATGGATTACC 57.360 33.333 0.00 0.00 33.14 2.85
4755 7035 8.923270 TGTCTTTTTAGAGGTTTCAAATGGATT 58.077 29.630 0.00 0.00 0.00 3.01
4756 7036 8.477419 TGTCTTTTTAGAGGTTTCAAATGGAT 57.523 30.769 0.00 0.00 0.00 3.41
4757 7037 7.889873 TGTCTTTTTAGAGGTTTCAAATGGA 57.110 32.000 0.00 0.00 0.00 3.41
4758 7038 8.940768 TTTGTCTTTTTAGAGGTTTCAAATGG 57.059 30.769 0.00 0.00 0.00 3.16
4777 7057 6.309389 ACCTCCGTTCCTAAATATTTGTCT 57.691 37.500 11.05 0.00 0.00 3.41
4779 7059 7.191593 ACTACCTCCGTTCCTAAATATTTGT 57.808 36.000 11.05 0.00 0.00 2.83
4781 7061 8.544687 ACTACTACCTCCGTTCCTAAATATTT 57.455 34.615 5.89 5.89 0.00 1.40
4782 7062 9.646522 TTACTACTACCTCCGTTCCTAAATATT 57.353 33.333 0.00 0.00 0.00 1.28
4784 7064 8.275040 AGTTACTACTACCTCCGTTCCTAAATA 58.725 37.037 0.00 0.00 31.21 1.40
4788 7068 5.045578 ACAGTTACTACTACCTCCGTTCCTA 60.046 44.000 0.00 0.00 31.96 2.94
4789 7069 4.263683 ACAGTTACTACTACCTCCGTTCCT 60.264 45.833 0.00 0.00 31.96 3.36
4792 7072 6.490040 TGTAAACAGTTACTACTACCTCCGTT 59.510 38.462 0.00 0.00 40.35 4.44
4800 7080 8.344446 TCTCAGCATGTAAACAGTTACTACTA 57.656 34.615 0.00 0.00 40.35 1.82
4805 7085 6.546395 CCAATCTCAGCATGTAAACAGTTAC 58.454 40.000 0.00 0.00 40.15 2.50
4806 7086 5.123820 GCCAATCTCAGCATGTAAACAGTTA 59.876 40.000 0.00 0.00 37.40 2.24
4807 7087 4.082571 GCCAATCTCAGCATGTAAACAGTT 60.083 41.667 0.00 0.00 37.40 3.16
4809 7089 3.181493 GGCCAATCTCAGCATGTAAACAG 60.181 47.826 0.00 0.00 37.40 3.16
4819 7110 1.755783 CCTTGGGGCCAATCTCAGC 60.756 63.158 4.39 0.00 35.20 4.26
4830 7121 2.113139 ACAGCGTCAACCTTGGGG 59.887 61.111 0.00 0.00 38.88 4.96
4848 7139 1.409427 AGAGAGCAAGGTATACGGCAC 59.591 52.381 13.16 8.26 0.00 5.01
4857 7148 2.975489 TCTTTTCTCCAGAGAGCAAGGT 59.025 45.455 14.25 0.00 40.22 3.50
4858 7149 3.692257 TCTTTTCTCCAGAGAGCAAGG 57.308 47.619 14.25 3.18 40.22 3.61
4883 7174 2.487762 CGCTCAAGTTTTGCCATCCTAA 59.512 45.455 0.00 0.00 0.00 2.69
4884 7175 2.083774 CGCTCAAGTTTTGCCATCCTA 58.916 47.619 0.00 0.00 0.00 2.94
4885 7176 0.883833 CGCTCAAGTTTTGCCATCCT 59.116 50.000 0.00 0.00 0.00 3.24
4886 7177 0.598065 ACGCTCAAGTTTTGCCATCC 59.402 50.000 0.00 0.00 0.00 3.51
4924 7216 1.895131 ACCATGGCGAGCAAAGAAAAT 59.105 42.857 13.04 0.00 0.00 1.82
4981 7273 4.248058 CGTTACCTTGAAAACCCGAGTAT 58.752 43.478 0.00 0.00 0.00 2.12
5012 7667 0.383949 TTCAAAGCAGAAACCACGGC 59.616 50.000 0.00 0.00 0.00 5.68
5033 7688 2.213499 AGAAAGTTCGGCACAGTCTTG 58.787 47.619 0.00 0.00 0.00 3.02
5077 7735 8.225777 GGTACTAGTACTTTTTGTTATGCACAC 58.774 37.037 27.71 5.79 34.07 3.82
5113 7771 2.257409 GATCACGGAGGGGCATGTGT 62.257 60.000 0.00 0.00 34.08 3.72
5130 7788 3.940209 ATGCAACAAAATGACGGTGAT 57.060 38.095 0.00 0.00 0.00 3.06
5149 7807 6.655078 AGTCAGTTAGGAAAATGCACAAAT 57.345 33.333 0.00 0.00 30.81 2.32
5225 7883 4.033684 GTCGTGATATGTGGACGTTACTC 58.966 47.826 0.00 0.00 34.69 2.59
5226 7884 3.441222 TGTCGTGATATGTGGACGTTACT 59.559 43.478 0.00 0.00 34.69 2.24
5227 7885 3.761657 TGTCGTGATATGTGGACGTTAC 58.238 45.455 0.00 0.00 34.69 2.50
5228 7886 4.356289 CATGTCGTGATATGTGGACGTTA 58.644 43.478 0.00 0.00 34.69 3.18
5229 7887 3.186909 CATGTCGTGATATGTGGACGTT 58.813 45.455 0.00 0.00 34.69 3.99
5230 7888 2.809446 CATGTCGTGATATGTGGACGT 58.191 47.619 0.00 0.00 34.69 4.34
5231 7889 1.522676 GCATGTCGTGATATGTGGACG 59.477 52.381 8.16 0.00 33.21 4.79
5266 7924 6.512297 TGCTAATCGTATCTTTATGCTGTGA 58.488 36.000 0.00 0.00 0.00 3.58
5272 7930 8.232513 ACAATGCATGCTAATCGTATCTTTATG 58.767 33.333 20.33 0.00 0.00 1.90
5293 7951 2.093152 GCCAACCGAAGTACGTACAATG 59.907 50.000 26.55 14.79 40.78 2.82
5295 7953 1.782044 GCCAACCGAAGTACGTACAA 58.218 50.000 26.55 0.00 40.78 2.41
5296 7954 0.387112 CGCCAACCGAAGTACGTACA 60.387 55.000 26.55 0.00 40.02 2.90
5297 7955 0.387239 ACGCCAACCGAAGTACGTAC 60.387 55.000 18.10 18.10 41.02 3.67
5298 7956 0.387112 CACGCCAACCGAAGTACGTA 60.387 55.000 0.00 0.00 41.02 3.57
5322 7980 1.154225 GGAAACGGCAGCGTCAATG 60.154 57.895 0.00 0.00 0.00 2.82
5485 8150 4.416738 GGGAGGCAGGTGTGGAGC 62.417 72.222 0.00 0.00 0.00 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.