Multiple sequence alignment - TraesCS3D01G344000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G344000 chr3D 100.000 3704 0 0 1 3704 455883255 455879552 0.000000e+00 6841
1 TraesCS3D01G344000 chr3D 92.237 219 16 1 25 242 189391755 189391973 3.590000e-80 309
2 TraesCS3D01G344000 chr3D 85.714 252 26 4 1 242 227908322 227908071 1.320000e-64 257
3 TraesCS3D01G344000 chr3A 95.627 3316 112 15 398 3704 598566897 598563606 0.000000e+00 5289
4 TraesCS3D01G344000 chr3B 93.550 3318 126 27 398 3704 602367251 602364011 0.000000e+00 4861
5 TraesCS3D01G344000 chr3B 89.286 252 16 3 2 242 327169038 327168787 4.650000e-79 305
6 TraesCS3D01G344000 chr2D 93.151 219 14 1 25 242 241569296 241569078 1.660000e-83 320
7 TraesCS3D01G344000 chr7D 92.694 219 15 1 25 242 228675922 228676140 7.720000e-82 315
8 TraesCS3D01G344000 chr7D 86.508 252 23 3 1 242 169147367 169147617 2.190000e-67 267
9 TraesCS3D01G344000 chr6D 92.273 220 16 1 25 243 201345719 201345938 9.990000e-81 311
10 TraesCS3D01G344000 chr4D 92.237 219 16 1 25 242 258377486 258377704 3.590000e-80 309
11 TraesCS3D01G344000 chr4D 91.781 219 17 1 25 242 258434404 258434622 1.670000e-78 303
12 TraesCS3D01G344000 chr4D 82.540 252 34 3 1 242 220768357 220768106 2.900000e-51 213
13 TraesCS3D01G344000 chr5A 92.202 218 16 1 25 241 333245347 333245130 1.290000e-79 307
14 TraesCS3D01G344000 chr4B 89.256 242 24 2 1 240 345110756 345110997 6.010000e-78 302
15 TraesCS3D01G344000 chr4B 85.375 253 26 4 1 242 148332456 148332708 6.140000e-63 252
16 TraesCS3D01G344000 chr4B 84.082 245 28 5 1 234 162245033 162244789 3.720000e-55 226
17 TraesCS3D01G344000 chr4B 83.422 187 18 6 1 176 314808637 314808453 1.060000e-35 161
18 TraesCS3D01G344000 chr1D 87.600 250 20 3 1 240 156879334 156879582 2.820000e-71 279
19 TraesCS3D01G344000 chr5D 86.111 252 25 3 1 242 182537765 182538016 2.840000e-66 263


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G344000 chr3D 455879552 455883255 3703 True 6841 6841 100.000 1 3704 1 chr3D.!!$R2 3703
1 TraesCS3D01G344000 chr3A 598563606 598566897 3291 True 5289 5289 95.627 398 3704 1 chr3A.!!$R1 3306
2 TraesCS3D01G344000 chr3B 602364011 602367251 3240 True 4861 4861 93.550 398 3704 1 chr3B.!!$R2 3306

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
631 636 0.035820 TTCTTCCGCGGTTAGGCAAT 60.036 50.000 27.15 0.00 0.00 3.56 F
632 637 0.825410 TCTTCCGCGGTTAGGCAATA 59.175 50.000 27.15 0.00 0.00 1.90 F
633 638 1.202486 TCTTCCGCGGTTAGGCAATAG 60.202 52.381 27.15 9.39 0.00 1.73 F
1428 1449 1.219393 CTCCTTTCTCCCTGACGCC 59.781 63.158 0.00 0.00 0.00 5.68 F
2582 2603 0.249911 GCAGGTGTTTCTGAGACGGT 60.250 55.000 0.00 0.00 36.93 4.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1998 2019 0.179111 ACAGTATCCCATGTGCGTCG 60.179 55.000 0.00 0.0 0.00 5.12 R
2261 2282 0.250989 TGGTAAAACCGGGCCTGAAG 60.251 55.000 15.09 0.0 42.58 3.02 R
2266 2287 0.963856 CCTTCTGGTAAAACCGGGCC 60.964 60.000 6.32 0.0 44.85 5.80 R
2595 2616 1.192534 GTTCTCGAAGAACCTGCGTTG 59.807 52.381 13.53 0.0 46.68 4.10 R
3453 3474 4.914983 TCTTTGCTCAGGAATGAGTGATT 58.085 39.130 7.07 0.0 38.16 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.620374 AGAACTTGATAGCTGATTGTGCG 59.380 43.478 0.00 0.00 35.28 5.34
23 24 2.283298 ACTTGATAGCTGATTGTGCGG 58.717 47.619 0.00 0.00 35.28 5.69
24 25 2.283298 CTTGATAGCTGATTGTGCGGT 58.717 47.619 0.00 0.00 35.28 5.68
25 26 1.939974 TGATAGCTGATTGTGCGGTC 58.060 50.000 0.00 0.00 35.28 4.79
26 27 1.206849 TGATAGCTGATTGTGCGGTCA 59.793 47.619 0.00 0.00 35.28 4.02
27 28 1.594862 GATAGCTGATTGTGCGGTCAC 59.405 52.381 0.00 0.00 43.40 3.67
35 36 4.314440 GTGCGGTCACAGGCTCCA 62.314 66.667 0.00 0.00 42.66 3.86
36 37 4.314440 TGCGGTCACAGGCTCCAC 62.314 66.667 0.00 0.00 0.00 4.02
37 38 4.008933 GCGGTCACAGGCTCCACT 62.009 66.667 0.00 0.00 0.00 4.00
38 39 2.743718 CGGTCACAGGCTCCACTT 59.256 61.111 0.00 0.00 0.00 3.16
39 40 1.374758 CGGTCACAGGCTCCACTTC 60.375 63.158 0.00 0.00 0.00 3.01
40 41 1.003233 GGTCACAGGCTCCACTTCC 60.003 63.158 0.00 0.00 0.00 3.46
41 42 1.374758 GTCACAGGCTCCACTTCCG 60.375 63.158 0.00 0.00 0.00 4.30
42 43 2.046892 CACAGGCTCCACTTCCGG 60.047 66.667 0.00 0.00 0.00 5.14
43 44 4.021925 ACAGGCTCCACTTCCGGC 62.022 66.667 0.00 0.00 0.00 6.13
44 45 4.785453 CAGGCTCCACTTCCGGCC 62.785 72.222 0.00 0.00 44.38 6.13
47 48 4.021925 GCTCCACTTCCGGCCACT 62.022 66.667 2.24 0.00 0.00 4.00
48 49 2.750350 CTCCACTTCCGGCCACTT 59.250 61.111 2.24 0.00 0.00 3.16
49 50 1.073199 CTCCACTTCCGGCCACTTT 59.927 57.895 2.24 0.00 0.00 2.66
50 51 1.228124 TCCACTTCCGGCCACTTTG 60.228 57.895 2.24 0.00 0.00 2.77
51 52 1.528309 CCACTTCCGGCCACTTTGT 60.528 57.895 2.24 0.00 0.00 2.83
52 53 0.250553 CCACTTCCGGCCACTTTGTA 60.251 55.000 2.24 0.00 0.00 2.41
53 54 1.600023 CACTTCCGGCCACTTTGTAA 58.400 50.000 2.24 0.00 0.00 2.41
54 55 1.950909 CACTTCCGGCCACTTTGTAAA 59.049 47.619 2.24 0.00 0.00 2.01
55 56 1.951602 ACTTCCGGCCACTTTGTAAAC 59.048 47.619 2.24 0.00 0.00 2.01
56 57 2.227194 CTTCCGGCCACTTTGTAAACT 58.773 47.619 2.24 0.00 0.00 2.66
57 58 2.351706 TCCGGCCACTTTGTAAACTT 57.648 45.000 2.24 0.00 0.00 2.66
58 59 3.488778 TCCGGCCACTTTGTAAACTTA 57.511 42.857 2.24 0.00 0.00 2.24
59 60 4.023726 TCCGGCCACTTTGTAAACTTAT 57.976 40.909 2.24 0.00 0.00 1.73
60 61 4.004982 TCCGGCCACTTTGTAAACTTATC 58.995 43.478 2.24 0.00 0.00 1.75
61 62 3.181514 CCGGCCACTTTGTAAACTTATCG 60.182 47.826 2.24 0.00 0.00 2.92
62 63 3.680937 CGGCCACTTTGTAAACTTATCGA 59.319 43.478 2.24 0.00 0.00 3.59
63 64 4.331717 CGGCCACTTTGTAAACTTATCGAT 59.668 41.667 2.24 2.16 0.00 3.59
64 65 5.163794 CGGCCACTTTGTAAACTTATCGATT 60.164 40.000 1.71 0.00 0.00 3.34
65 66 6.027749 GGCCACTTTGTAAACTTATCGATTG 58.972 40.000 1.71 0.00 0.00 2.67
66 67 5.511729 GCCACTTTGTAAACTTATCGATTGC 59.488 40.000 1.71 0.00 0.00 3.56
67 68 6.607689 CCACTTTGTAAACTTATCGATTGCA 58.392 36.000 1.71 0.00 0.00 4.08
68 69 7.081349 CCACTTTGTAAACTTATCGATTGCAA 58.919 34.615 1.71 0.00 30.50 4.08
69 70 7.060633 CCACTTTGTAAACTTATCGATTGCAAC 59.939 37.037 1.71 0.00 31.73 4.17
70 71 7.589587 CACTTTGTAAACTTATCGATTGCAACA 59.410 33.333 1.71 0.00 31.73 3.33
71 72 8.296713 ACTTTGTAAACTTATCGATTGCAACAT 58.703 29.630 1.71 0.00 31.73 2.71
72 73 9.767684 CTTTGTAAACTTATCGATTGCAACATA 57.232 29.630 1.71 0.00 31.73 2.29
73 74 9.549509 TTTGTAAACTTATCGATTGCAACATAC 57.450 29.630 1.71 0.38 31.73 2.39
74 75 8.257830 TGTAAACTTATCGATTGCAACATACA 57.742 30.769 1.71 2.98 0.00 2.29
75 76 8.722394 TGTAAACTTATCGATTGCAACATACAA 58.278 29.630 1.71 0.00 0.00 2.41
76 77 9.210426 GTAAACTTATCGATTGCAACATACAAG 57.790 33.333 1.71 5.86 0.00 3.16
77 78 7.609760 AACTTATCGATTGCAACATACAAGA 57.390 32.000 1.71 0.00 0.00 3.02
78 79 7.609760 ACTTATCGATTGCAACATACAAGAA 57.390 32.000 1.71 0.00 0.00 2.52
79 80 8.213518 ACTTATCGATTGCAACATACAAGAAT 57.786 30.769 1.71 0.00 0.00 2.40
80 81 8.677300 ACTTATCGATTGCAACATACAAGAATT 58.323 29.630 1.71 0.00 0.00 2.17
81 82 9.162793 CTTATCGATTGCAACATACAAGAATTC 57.837 33.333 1.71 0.00 0.00 2.17
82 83 6.493449 TCGATTGCAACATACAAGAATTCA 57.507 33.333 0.00 0.00 0.00 2.57
83 84 6.907741 TCGATTGCAACATACAAGAATTCAA 58.092 32.000 0.00 0.00 0.00 2.69
84 85 7.366513 TCGATTGCAACATACAAGAATTCAAA 58.633 30.769 0.00 0.00 0.00 2.69
85 86 7.538334 TCGATTGCAACATACAAGAATTCAAAG 59.462 33.333 0.00 0.00 0.00 2.77
86 87 6.768029 TTGCAACATACAAGAATTCAAAGC 57.232 33.333 8.44 0.00 0.00 3.51
87 88 5.229423 TGCAACATACAAGAATTCAAAGCC 58.771 37.500 8.44 0.00 0.00 4.35
88 89 4.627035 GCAACATACAAGAATTCAAAGCCC 59.373 41.667 8.44 0.00 0.00 5.19
89 90 5.170748 CAACATACAAGAATTCAAAGCCCC 58.829 41.667 8.44 0.00 0.00 5.80
90 91 3.769300 ACATACAAGAATTCAAAGCCCCC 59.231 43.478 8.44 0.00 0.00 5.40
91 92 1.256812 ACAAGAATTCAAAGCCCCCG 58.743 50.000 8.44 0.00 0.00 5.73
92 93 0.532115 CAAGAATTCAAAGCCCCCGG 59.468 55.000 8.44 0.00 0.00 5.73
93 94 0.114364 AAGAATTCAAAGCCCCCGGT 59.886 50.000 8.44 0.00 0.00 5.28
94 95 0.996583 AGAATTCAAAGCCCCCGGTA 59.003 50.000 8.44 0.00 0.00 4.02
95 96 1.064685 AGAATTCAAAGCCCCCGGTAG 60.065 52.381 8.44 0.00 0.00 3.18
96 97 0.683179 AATTCAAAGCCCCCGGTAGC 60.683 55.000 0.00 2.03 0.00 3.58
97 98 1.858739 ATTCAAAGCCCCCGGTAGCA 61.859 55.000 14.69 0.00 0.00 3.49
98 99 1.858739 TTCAAAGCCCCCGGTAGCAT 61.859 55.000 14.69 0.29 0.00 3.79
99 100 2.120909 CAAAGCCCCCGGTAGCATG 61.121 63.158 14.69 9.37 0.00 4.06
100 101 3.358932 AAAGCCCCCGGTAGCATGG 62.359 63.158 14.69 0.39 0.00 3.66
120 121 2.597903 GGAGGGGCCCAAGATGTC 59.402 66.667 27.72 12.37 0.00 3.06
121 122 2.308722 GGAGGGGCCCAAGATGTCA 61.309 63.158 27.72 0.00 0.00 3.58
122 123 1.691219 GAGGGGCCCAAGATGTCAA 59.309 57.895 27.72 0.00 0.00 3.18
123 124 0.394899 GAGGGGCCCAAGATGTCAAG 60.395 60.000 27.72 0.00 0.00 3.02
124 125 2.054453 GGGGCCCAAGATGTCAAGC 61.054 63.158 26.86 0.00 0.00 4.01
125 126 2.054453 GGGCCCAAGATGTCAAGCC 61.054 63.158 19.95 0.00 39.73 4.35
126 127 2.054453 GGCCCAAGATGTCAAGCCC 61.054 63.158 0.00 0.00 34.23 5.19
127 128 2.054453 GCCCAAGATGTCAAGCCCC 61.054 63.158 0.00 0.00 0.00 5.80
128 129 1.380380 CCCAAGATGTCAAGCCCCC 60.380 63.158 0.00 0.00 0.00 5.40
129 130 1.383799 CCAAGATGTCAAGCCCCCA 59.616 57.895 0.00 0.00 0.00 4.96
130 131 0.682209 CCAAGATGTCAAGCCCCCAG 60.682 60.000 0.00 0.00 0.00 4.45
131 132 0.329261 CAAGATGTCAAGCCCCCAGA 59.671 55.000 0.00 0.00 0.00 3.86
132 133 0.329596 AAGATGTCAAGCCCCCAGAC 59.670 55.000 0.00 0.00 0.00 3.51
133 134 1.077429 GATGTCAAGCCCCCAGACC 60.077 63.158 0.00 0.00 0.00 3.85
134 135 1.852157 ATGTCAAGCCCCCAGACCA 60.852 57.895 0.00 0.00 0.00 4.02
135 136 1.434513 ATGTCAAGCCCCCAGACCAA 61.435 55.000 0.00 0.00 0.00 3.67
136 137 1.152830 GTCAAGCCCCCAGACCAAA 59.847 57.895 0.00 0.00 0.00 3.28
137 138 0.469144 GTCAAGCCCCCAGACCAAAA 60.469 55.000 0.00 0.00 0.00 2.44
138 139 0.486879 TCAAGCCCCCAGACCAAAAT 59.513 50.000 0.00 0.00 0.00 1.82
139 140 0.609662 CAAGCCCCCAGACCAAAATG 59.390 55.000 0.00 0.00 0.00 2.32
140 141 0.545071 AAGCCCCCAGACCAAAATGG 60.545 55.000 0.00 0.00 45.02 3.16
141 142 2.659063 GCCCCCAGACCAAAATGGC 61.659 63.158 0.00 0.00 42.67 4.40
142 143 1.989508 CCCCCAGACCAAAATGGCC 60.990 63.158 0.00 0.00 42.67 5.36
143 144 1.229145 CCCCAGACCAAAATGGCCA 60.229 57.895 8.56 8.56 42.67 5.36
144 145 1.259840 CCCCAGACCAAAATGGCCAG 61.260 60.000 13.05 0.00 42.67 4.85
145 146 1.259840 CCCAGACCAAAATGGCCAGG 61.260 60.000 13.05 9.74 42.67 4.45
146 147 0.251742 CCAGACCAAAATGGCCAGGA 60.252 55.000 13.05 0.00 42.67 3.86
147 148 0.890683 CAGACCAAAATGGCCAGGAC 59.109 55.000 13.05 7.39 42.67 3.85
148 149 0.482446 AGACCAAAATGGCCAGGACA 59.518 50.000 13.05 0.00 42.67 4.02
149 150 1.133199 AGACCAAAATGGCCAGGACAA 60.133 47.619 13.05 0.00 42.67 3.18
150 151 1.691434 GACCAAAATGGCCAGGACAAA 59.309 47.619 13.05 0.00 42.67 2.83
151 152 1.693606 ACCAAAATGGCCAGGACAAAG 59.306 47.619 13.05 0.00 42.67 2.77
152 153 1.002315 CCAAAATGGCCAGGACAAAGG 59.998 52.381 13.05 2.58 0.00 3.11
153 154 1.969923 CAAAATGGCCAGGACAAAGGA 59.030 47.619 13.05 0.00 0.00 3.36
154 155 2.368221 CAAAATGGCCAGGACAAAGGAA 59.632 45.455 13.05 0.00 0.00 3.36
155 156 2.629017 AATGGCCAGGACAAAGGAAT 57.371 45.000 13.05 0.00 0.00 3.01
156 157 2.629017 ATGGCCAGGACAAAGGAATT 57.371 45.000 13.05 0.00 0.00 2.17
157 158 1.631405 TGGCCAGGACAAAGGAATTG 58.369 50.000 0.00 0.00 44.95 2.32
170 171 6.419980 CAAAGGAATTGTCTAGAGAGCTTG 57.580 41.667 0.00 0.00 34.16 4.01
171 172 6.169094 CAAAGGAATTGTCTAGAGAGCTTGA 58.831 40.000 0.00 0.00 34.16 3.02
172 173 5.596836 AGGAATTGTCTAGAGAGCTTGAG 57.403 43.478 0.00 0.00 0.00 3.02
173 174 4.119136 GGAATTGTCTAGAGAGCTTGAGC 58.881 47.826 0.00 0.00 42.49 4.26
174 175 4.382470 GGAATTGTCTAGAGAGCTTGAGCA 60.382 45.833 5.70 0.00 45.16 4.26
175 176 3.865011 TTGTCTAGAGAGCTTGAGCAG 57.135 47.619 5.70 0.00 45.16 4.24
176 177 2.098614 TGTCTAGAGAGCTTGAGCAGG 58.901 52.381 5.70 0.00 45.16 4.85
177 178 2.099405 GTCTAGAGAGCTTGAGCAGGT 58.901 52.381 5.70 0.00 45.16 4.00
178 179 2.495669 GTCTAGAGAGCTTGAGCAGGTT 59.504 50.000 5.70 0.00 45.16 3.50
179 180 2.495270 TCTAGAGAGCTTGAGCAGGTTG 59.505 50.000 5.70 0.00 45.16 3.77
180 181 1.346062 AGAGAGCTTGAGCAGGTTGA 58.654 50.000 5.70 0.00 45.16 3.18
181 182 1.907936 AGAGAGCTTGAGCAGGTTGAT 59.092 47.619 5.70 0.00 45.16 2.57
182 183 2.008329 GAGAGCTTGAGCAGGTTGATG 58.992 52.381 5.70 0.00 45.16 3.07
183 184 1.093159 GAGCTTGAGCAGGTTGATGG 58.907 55.000 5.70 0.00 45.16 3.51
184 185 0.694771 AGCTTGAGCAGGTTGATGGA 59.305 50.000 5.70 0.00 45.16 3.41
185 186 1.284198 AGCTTGAGCAGGTTGATGGAT 59.716 47.619 5.70 0.00 45.16 3.41
186 187 1.404391 GCTTGAGCAGGTTGATGGATG 59.596 52.381 0.00 0.00 41.59 3.51
187 188 2.719739 CTTGAGCAGGTTGATGGATGT 58.280 47.619 0.00 0.00 0.00 3.06
188 189 2.885135 TGAGCAGGTTGATGGATGTT 57.115 45.000 0.00 0.00 0.00 2.71
189 190 2.715046 TGAGCAGGTTGATGGATGTTC 58.285 47.619 0.00 0.00 0.00 3.18
190 191 2.306805 TGAGCAGGTTGATGGATGTTCT 59.693 45.455 0.00 0.00 0.00 3.01
191 192 3.245016 TGAGCAGGTTGATGGATGTTCTT 60.245 43.478 0.00 0.00 0.00 2.52
192 193 3.087031 AGCAGGTTGATGGATGTTCTTG 58.913 45.455 0.00 0.00 0.00 3.02
193 194 2.165030 GCAGGTTGATGGATGTTCTTGG 59.835 50.000 0.00 0.00 0.00 3.61
194 195 3.689347 CAGGTTGATGGATGTTCTTGGA 58.311 45.455 0.00 0.00 0.00 3.53
195 196 3.693085 CAGGTTGATGGATGTTCTTGGAG 59.307 47.826 0.00 0.00 0.00 3.86
196 197 3.331889 AGGTTGATGGATGTTCTTGGAGT 59.668 43.478 0.00 0.00 0.00 3.85
197 198 3.441572 GGTTGATGGATGTTCTTGGAGTG 59.558 47.826 0.00 0.00 0.00 3.51
198 199 3.354948 TGATGGATGTTCTTGGAGTGG 57.645 47.619 0.00 0.00 0.00 4.00
199 200 2.912295 TGATGGATGTTCTTGGAGTGGA 59.088 45.455 0.00 0.00 0.00 4.02
200 201 3.330405 TGATGGATGTTCTTGGAGTGGAA 59.670 43.478 0.00 0.00 0.00 3.53
201 202 3.140325 TGGATGTTCTTGGAGTGGAAC 57.860 47.619 0.00 0.00 41.28 3.62
213 214 3.139029 GTGGAACTGGTAGGCTTCG 57.861 57.895 0.00 0.00 0.00 3.79
214 215 1.019805 GTGGAACTGGTAGGCTTCGC 61.020 60.000 0.00 0.00 0.00 4.70
215 216 1.295423 GGAACTGGTAGGCTTCGCA 59.705 57.895 0.00 0.00 0.00 5.10
216 217 0.107654 GGAACTGGTAGGCTTCGCAT 60.108 55.000 0.00 0.00 0.00 4.73
217 218 1.291132 GAACTGGTAGGCTTCGCATC 58.709 55.000 0.00 0.00 0.00 3.91
218 219 0.905357 AACTGGTAGGCTTCGCATCT 59.095 50.000 0.00 0.00 0.00 2.90
219 220 0.176680 ACTGGTAGGCTTCGCATCTG 59.823 55.000 0.00 0.00 0.00 2.90
220 221 0.531532 CTGGTAGGCTTCGCATCTGG 60.532 60.000 0.00 0.00 0.00 3.86
221 222 1.264749 TGGTAGGCTTCGCATCTGGT 61.265 55.000 0.00 0.00 0.00 4.00
222 223 0.811616 GGTAGGCTTCGCATCTGGTG 60.812 60.000 0.00 0.00 0.00 4.17
223 224 0.175760 GTAGGCTTCGCATCTGGTGA 59.824 55.000 0.00 0.00 0.00 4.02
224 225 0.175760 TAGGCTTCGCATCTGGTGAC 59.824 55.000 0.00 0.00 35.30 3.67
225 226 1.078848 GGCTTCGCATCTGGTGACT 60.079 57.895 0.00 0.00 35.30 3.41
226 227 0.175760 GGCTTCGCATCTGGTGACTA 59.824 55.000 0.00 0.00 35.30 2.59
227 228 1.565305 GCTTCGCATCTGGTGACTAG 58.435 55.000 0.00 0.00 35.30 2.57
228 229 1.565305 CTTCGCATCTGGTGACTAGC 58.435 55.000 0.00 0.00 35.30 3.42
229 230 1.135915 CTTCGCATCTGGTGACTAGCT 59.864 52.381 0.00 0.00 35.30 3.32
230 231 0.741326 TCGCATCTGGTGACTAGCTC 59.259 55.000 0.00 0.00 0.00 4.09
231 232 0.593518 CGCATCTGGTGACTAGCTCG 60.594 60.000 0.00 0.00 0.00 5.03
232 233 0.741326 GCATCTGGTGACTAGCTCGA 59.259 55.000 0.00 0.00 0.00 4.04
233 234 1.339610 GCATCTGGTGACTAGCTCGAT 59.660 52.381 0.00 0.00 0.00 3.59
234 235 2.223923 GCATCTGGTGACTAGCTCGATT 60.224 50.000 0.00 0.00 0.00 3.34
235 236 3.379240 CATCTGGTGACTAGCTCGATTG 58.621 50.000 0.00 0.00 0.00 2.67
236 237 1.135139 TCTGGTGACTAGCTCGATTGC 59.865 52.381 0.00 0.00 0.00 3.56
237 238 0.894835 TGGTGACTAGCTCGATTGCA 59.105 50.000 0.00 0.00 34.99 4.08
238 239 1.482182 TGGTGACTAGCTCGATTGCAT 59.518 47.619 0.00 0.00 34.99 3.96
239 240 2.131183 GGTGACTAGCTCGATTGCATC 58.869 52.381 0.00 0.00 34.99 3.91
240 241 2.223923 GGTGACTAGCTCGATTGCATCT 60.224 50.000 0.00 0.00 34.99 2.90
241 242 3.452474 GTGACTAGCTCGATTGCATCTT 58.548 45.455 0.00 0.00 34.99 2.40
242 243 4.499865 GGTGACTAGCTCGATTGCATCTTA 60.500 45.833 0.00 0.00 34.99 2.10
243 244 4.442733 GTGACTAGCTCGATTGCATCTTAC 59.557 45.833 0.00 0.00 34.99 2.34
244 245 4.339530 TGACTAGCTCGATTGCATCTTACT 59.660 41.667 0.00 0.00 34.99 2.24
245 246 5.531287 TGACTAGCTCGATTGCATCTTACTA 59.469 40.000 0.00 0.00 34.99 1.82
246 247 6.007936 ACTAGCTCGATTGCATCTTACTAG 57.992 41.667 0.00 0.00 34.99 2.57
247 248 4.250116 AGCTCGATTGCATCTTACTAGG 57.750 45.455 0.00 0.00 34.99 3.02
248 249 2.734079 GCTCGATTGCATCTTACTAGGC 59.266 50.000 0.00 0.00 0.00 3.93
249 250 3.553922 GCTCGATTGCATCTTACTAGGCT 60.554 47.826 0.00 0.00 0.00 4.58
250 251 4.233789 CTCGATTGCATCTTACTAGGCTC 58.766 47.826 0.00 0.00 0.00 4.70
251 252 3.636764 TCGATTGCATCTTACTAGGCTCA 59.363 43.478 0.00 0.00 0.00 4.26
252 253 3.738282 CGATTGCATCTTACTAGGCTCAC 59.262 47.826 0.00 0.00 0.00 3.51
253 254 3.543680 TTGCATCTTACTAGGCTCACC 57.456 47.619 0.00 0.00 0.00 4.02
265 266 4.335647 CTCACCTGCCCGGCAAGT 62.336 66.667 14.45 11.10 38.41 3.16
268 269 4.335647 ACCTGCCCGGCAAGTGAG 62.336 66.667 13.09 0.54 38.41 3.51
270 271 4.335647 CTGCCCGGCAAGTGAGGT 62.336 66.667 14.45 0.00 38.41 3.85
271 272 3.850098 CTGCCCGGCAAGTGAGGTT 62.850 63.158 14.45 0.00 38.41 3.50
272 273 2.597510 GCCCGGCAAGTGAGGTTT 60.598 61.111 3.91 0.00 0.00 3.27
273 274 2.626780 GCCCGGCAAGTGAGGTTTC 61.627 63.158 3.91 0.00 0.00 2.78
274 275 1.073199 CCCGGCAAGTGAGGTTTCT 59.927 57.895 0.00 0.00 0.00 2.52
275 276 0.537371 CCCGGCAAGTGAGGTTTCTT 60.537 55.000 0.00 0.00 0.00 2.52
276 277 0.875059 CCGGCAAGTGAGGTTTCTTC 59.125 55.000 0.00 0.00 0.00 2.87
277 278 1.543429 CCGGCAAGTGAGGTTTCTTCT 60.543 52.381 0.00 0.00 0.00 2.85
278 279 2.222027 CGGCAAGTGAGGTTTCTTCTT 58.778 47.619 0.00 0.00 0.00 2.52
279 280 3.399330 CGGCAAGTGAGGTTTCTTCTTA 58.601 45.455 0.00 0.00 0.00 2.10
280 281 3.433615 CGGCAAGTGAGGTTTCTTCTTAG 59.566 47.826 0.00 0.00 0.00 2.18
281 282 4.390264 GGCAAGTGAGGTTTCTTCTTAGT 58.610 43.478 0.00 0.00 0.00 2.24
282 283 4.214332 GGCAAGTGAGGTTTCTTCTTAGTG 59.786 45.833 0.00 0.00 0.00 2.74
283 284 4.816925 GCAAGTGAGGTTTCTTCTTAGTGT 59.183 41.667 0.00 0.00 0.00 3.55
284 285 5.297029 GCAAGTGAGGTTTCTTCTTAGTGTT 59.703 40.000 0.00 0.00 0.00 3.32
285 286 6.482308 GCAAGTGAGGTTTCTTCTTAGTGTTA 59.518 38.462 0.00 0.00 0.00 2.41
286 287 7.173390 GCAAGTGAGGTTTCTTCTTAGTGTTAT 59.827 37.037 0.00 0.00 0.00 1.89
287 288 8.713271 CAAGTGAGGTTTCTTCTTAGTGTTATC 58.287 37.037 0.00 0.00 0.00 1.75
288 289 8.196378 AGTGAGGTTTCTTCTTAGTGTTATCT 57.804 34.615 0.00 0.00 0.00 1.98
289 290 8.652290 AGTGAGGTTTCTTCTTAGTGTTATCTT 58.348 33.333 0.00 0.00 0.00 2.40
290 291 8.713271 GTGAGGTTTCTTCTTAGTGTTATCTTG 58.287 37.037 0.00 0.00 0.00 3.02
291 292 8.429641 TGAGGTTTCTTCTTAGTGTTATCTTGT 58.570 33.333 0.00 0.00 0.00 3.16
292 293 9.274206 GAGGTTTCTTCTTAGTGTTATCTTGTT 57.726 33.333 0.00 0.00 0.00 2.83
293 294 9.057089 AGGTTTCTTCTTAGTGTTATCTTGTTG 57.943 33.333 0.00 0.00 0.00 3.33
294 295 8.837389 GGTTTCTTCTTAGTGTTATCTTGTTGT 58.163 33.333 0.00 0.00 0.00 3.32
295 296 9.865484 GTTTCTTCTTAGTGTTATCTTGTTGTC 57.135 33.333 0.00 0.00 0.00 3.18
296 297 9.832445 TTTCTTCTTAGTGTTATCTTGTTGTCT 57.168 29.630 0.00 0.00 0.00 3.41
297 298 9.832445 TTCTTCTTAGTGTTATCTTGTTGTCTT 57.168 29.630 0.00 0.00 0.00 3.01
298 299 9.261180 TCTTCTTAGTGTTATCTTGTTGTCTTG 57.739 33.333 0.00 0.00 0.00 3.02
299 300 7.962964 TCTTAGTGTTATCTTGTTGTCTTGG 57.037 36.000 0.00 0.00 0.00 3.61
300 301 6.426937 TCTTAGTGTTATCTTGTTGTCTTGGC 59.573 38.462 0.00 0.00 0.00 4.52
301 302 4.718961 AGTGTTATCTTGTTGTCTTGGCT 58.281 39.130 0.00 0.00 0.00 4.75
302 303 5.133221 AGTGTTATCTTGTTGTCTTGGCTT 58.867 37.500 0.00 0.00 0.00 4.35
303 304 5.009010 AGTGTTATCTTGTTGTCTTGGCTTG 59.991 40.000 0.00 0.00 0.00 4.01
304 305 4.887071 TGTTATCTTGTTGTCTTGGCTTGT 59.113 37.500 0.00 0.00 0.00 3.16
305 306 5.008613 TGTTATCTTGTTGTCTTGGCTTGTC 59.991 40.000 0.00 0.00 0.00 3.18
306 307 3.281727 TCTTGTTGTCTTGGCTTGTCT 57.718 42.857 0.00 0.00 0.00 3.41
307 308 3.620488 TCTTGTTGTCTTGGCTTGTCTT 58.380 40.909 0.00 0.00 0.00 3.01
308 309 3.378112 TCTTGTTGTCTTGGCTTGTCTTG 59.622 43.478 0.00 0.00 0.00 3.02
309 310 2.023673 TGTTGTCTTGGCTTGTCTTGG 58.976 47.619 0.00 0.00 0.00 3.61
310 311 2.024414 GTTGTCTTGGCTTGTCTTGGT 58.976 47.619 0.00 0.00 0.00 3.67
311 312 1.967319 TGTCTTGGCTTGTCTTGGTC 58.033 50.000 0.00 0.00 0.00 4.02
312 313 1.490490 TGTCTTGGCTTGTCTTGGTCT 59.510 47.619 0.00 0.00 0.00 3.85
313 314 2.092429 TGTCTTGGCTTGTCTTGGTCTT 60.092 45.455 0.00 0.00 0.00 3.01
314 315 2.550180 GTCTTGGCTTGTCTTGGTCTTC 59.450 50.000 0.00 0.00 0.00 2.87
315 316 2.439507 TCTTGGCTTGTCTTGGTCTTCT 59.560 45.455 0.00 0.00 0.00 2.85
316 317 3.117888 TCTTGGCTTGTCTTGGTCTTCTT 60.118 43.478 0.00 0.00 0.00 2.52
317 318 2.575532 TGGCTTGTCTTGGTCTTCTTG 58.424 47.619 0.00 0.00 0.00 3.02
318 319 2.172505 TGGCTTGTCTTGGTCTTCTTGA 59.827 45.455 0.00 0.00 0.00 3.02
319 320 3.181440 TGGCTTGTCTTGGTCTTCTTGAT 60.181 43.478 0.00 0.00 0.00 2.57
320 321 3.438434 GGCTTGTCTTGGTCTTCTTGATC 59.562 47.826 0.00 0.00 0.00 2.92
321 322 4.322567 GCTTGTCTTGGTCTTCTTGATCT 58.677 43.478 0.00 0.00 0.00 2.75
322 323 4.153835 GCTTGTCTTGGTCTTCTTGATCTG 59.846 45.833 0.00 0.00 0.00 2.90
323 324 4.277515 TGTCTTGGTCTTCTTGATCTGG 57.722 45.455 0.00 0.00 0.00 3.86
324 325 3.006247 GTCTTGGTCTTCTTGATCTGGC 58.994 50.000 0.00 0.00 0.00 4.85
325 326 2.909006 TCTTGGTCTTCTTGATCTGGCT 59.091 45.455 0.00 0.00 0.00 4.75
326 327 3.328931 TCTTGGTCTTCTTGATCTGGCTT 59.671 43.478 0.00 0.00 0.00 4.35
327 328 3.063510 TGGTCTTCTTGATCTGGCTTG 57.936 47.619 0.00 0.00 0.00 4.01
328 329 1.742268 GGTCTTCTTGATCTGGCTTGC 59.258 52.381 0.00 0.00 0.00 4.01
329 330 2.617532 GGTCTTCTTGATCTGGCTTGCT 60.618 50.000 0.00 0.00 0.00 3.91
330 331 3.080319 GTCTTCTTGATCTGGCTTGCTT 58.920 45.455 0.00 0.00 0.00 3.91
331 332 3.126686 GTCTTCTTGATCTGGCTTGCTTC 59.873 47.826 0.00 0.00 0.00 3.86
332 333 2.119801 TCTTGATCTGGCTTGCTTCC 57.880 50.000 0.00 0.00 0.00 3.46
333 334 1.632409 TCTTGATCTGGCTTGCTTCCT 59.368 47.619 0.00 0.00 0.00 3.36
334 335 2.040813 TCTTGATCTGGCTTGCTTCCTT 59.959 45.455 0.00 0.00 0.00 3.36
335 336 1.830279 TGATCTGGCTTGCTTCCTTG 58.170 50.000 0.00 0.00 0.00 3.61
336 337 0.455005 GATCTGGCTTGCTTCCTTGC 59.545 55.000 0.00 0.00 0.00 4.01
337 338 0.039326 ATCTGGCTTGCTTCCTTGCT 59.961 50.000 0.00 0.00 0.00 3.91
338 339 0.892358 TCTGGCTTGCTTCCTTGCTG 60.892 55.000 0.00 0.00 0.00 4.41
339 340 2.260743 GGCTTGCTTCCTTGCTGC 59.739 61.111 0.00 0.00 34.43 5.25
340 341 2.260743 GCTTGCTTCCTTGCTGCC 59.739 61.111 0.00 0.00 0.00 4.85
341 342 2.564975 CTTGCTTCCTTGCTGCCG 59.435 61.111 0.00 0.00 0.00 5.69
342 343 2.203337 TTGCTTCCTTGCTGCCGT 60.203 55.556 0.00 0.00 0.00 5.68
343 344 2.467946 CTTGCTTCCTTGCTGCCGTG 62.468 60.000 0.00 0.00 0.00 4.94
344 345 4.410743 GCTTCCTTGCTGCCGTGC 62.411 66.667 0.00 0.00 0.00 5.34
345 346 3.741476 CTTCCTTGCTGCCGTGCC 61.741 66.667 0.00 0.00 0.00 5.01
346 347 4.269523 TTCCTTGCTGCCGTGCCT 62.270 61.111 0.00 0.00 0.00 4.75
349 350 4.034258 CTTGCTGCCGTGCCTGTG 62.034 66.667 0.00 0.00 0.00 3.66
350 351 4.873810 TTGCTGCCGTGCCTGTGT 62.874 61.111 0.00 0.00 0.00 3.72
351 352 3.468326 TTGCTGCCGTGCCTGTGTA 62.468 57.895 0.00 0.00 0.00 2.90
352 353 2.436646 GCTGCCGTGCCTGTGTAT 60.437 61.111 0.00 0.00 0.00 2.29
353 354 2.753966 GCTGCCGTGCCTGTGTATG 61.754 63.158 0.00 0.00 0.00 2.39
354 355 2.046411 TGCCGTGCCTGTGTATGG 60.046 61.111 0.00 0.00 36.41 2.74
355 356 2.046314 GCCGTGCCTGTGTATGGT 60.046 61.111 0.00 0.00 35.80 3.55
356 357 2.106683 GCCGTGCCTGTGTATGGTC 61.107 63.158 0.00 0.00 35.80 4.02
357 358 1.449601 CCGTGCCTGTGTATGGTCC 60.450 63.158 0.00 0.00 0.00 4.46
358 359 1.809619 CGTGCCTGTGTATGGTCCG 60.810 63.158 0.00 0.00 0.00 4.79
359 360 1.449601 GTGCCTGTGTATGGTCCGG 60.450 63.158 0.00 0.00 0.00 5.14
360 361 2.189521 GCCTGTGTATGGTCCGGG 59.810 66.667 0.00 0.00 0.00 5.73
361 362 2.189521 CCTGTGTATGGTCCGGGC 59.810 66.667 0.00 0.00 0.00 6.13
362 363 2.665089 CCTGTGTATGGTCCGGGCA 61.665 63.158 9.07 0.00 0.00 5.36
363 364 1.298340 CTGTGTATGGTCCGGGCAA 59.702 57.895 9.07 0.00 0.00 4.52
364 365 1.003112 TGTGTATGGTCCGGGCAAC 60.003 57.895 9.07 3.05 0.00 4.17
365 366 2.104253 GTGTATGGTCCGGGCAACG 61.104 63.158 9.07 0.00 43.80 4.10
366 367 3.199891 GTATGGTCCGGGCAACGC 61.200 66.667 9.07 0.00 42.52 4.84
367 368 3.707458 TATGGTCCGGGCAACGCA 61.707 61.111 9.07 0.00 42.52 5.24
368 369 3.961838 TATGGTCCGGGCAACGCAC 62.962 63.158 9.07 0.00 42.52 5.34
375 376 4.025401 GGGCAACGCACGTGAAGG 62.025 66.667 22.23 9.99 37.60 3.46
376 377 3.276846 GGCAACGCACGTGAAGGT 61.277 61.111 22.23 10.70 0.00 3.50
377 378 2.713154 GCAACGCACGTGAAGGTT 59.287 55.556 22.23 16.25 0.00 3.50
378 379 1.063488 GCAACGCACGTGAAGGTTT 59.937 52.632 22.23 0.51 0.00 3.27
379 380 1.199852 GCAACGCACGTGAAGGTTTG 61.200 55.000 22.23 14.07 0.00 2.93
380 381 0.098025 CAACGCACGTGAAGGTTTGT 59.902 50.000 22.23 2.10 0.00 2.83
381 382 0.806241 AACGCACGTGAAGGTTTGTT 59.194 45.000 22.23 8.24 0.00 2.83
382 383 0.098025 ACGCACGTGAAGGTTTGTTG 59.902 50.000 22.23 0.00 0.00 3.33
383 384 1.199852 CGCACGTGAAGGTTTGTTGC 61.200 55.000 22.23 0.00 0.00 4.17
384 385 0.179150 GCACGTGAAGGTTTGTTGCA 60.179 50.000 22.23 0.00 0.00 4.08
385 386 1.544686 CACGTGAAGGTTTGTTGCAC 58.455 50.000 10.90 0.00 0.00 4.57
386 387 0.454196 ACGTGAAGGTTTGTTGCACC 59.546 50.000 0.00 0.00 34.06 5.01
387 388 0.591236 CGTGAAGGTTTGTTGCACCG 60.591 55.000 0.00 0.00 39.56 4.94
388 389 0.736053 GTGAAGGTTTGTTGCACCGA 59.264 50.000 0.00 0.00 39.56 4.69
389 390 0.736053 TGAAGGTTTGTTGCACCGAC 59.264 50.000 0.00 0.00 39.56 4.79
390 391 0.736053 GAAGGTTTGTTGCACCGACA 59.264 50.000 0.00 0.00 39.56 4.35
391 392 1.336755 GAAGGTTTGTTGCACCGACAT 59.663 47.619 0.00 0.00 39.56 3.06
392 393 0.951558 AGGTTTGTTGCACCGACATC 59.048 50.000 0.00 0.00 39.56 3.06
393 394 0.039527 GGTTTGTTGCACCGACATCC 60.040 55.000 0.00 0.00 0.00 3.51
394 395 0.665835 GTTTGTTGCACCGACATCCA 59.334 50.000 0.00 0.00 0.00 3.41
395 396 0.665835 TTTGTTGCACCGACATCCAC 59.334 50.000 0.00 0.00 0.00 4.02
396 397 0.464554 TTGTTGCACCGACATCCACA 60.465 50.000 0.00 0.00 0.00 4.17
436 437 6.275692 TCCTTTTCTACTCCCCTTTTCTTT 57.724 37.500 0.00 0.00 0.00 2.52
541 546 7.429636 TTTCACTCGAGGTAAATTGGTAAAG 57.570 36.000 18.41 0.00 0.00 1.85
558 563 4.143094 GGTAAAGAAACAGCTGTCGATGAC 60.143 45.833 21.95 13.60 0.00 3.06
624 629 1.302511 ATGCTGTTCTTCCGCGGTT 60.303 52.632 27.15 0.00 0.00 4.44
625 630 0.036765 ATGCTGTTCTTCCGCGGTTA 60.037 50.000 27.15 13.80 0.00 2.85
627 632 1.359459 GCTGTTCTTCCGCGGTTAGG 61.359 60.000 27.15 7.42 0.00 2.69
628 633 1.359459 CTGTTCTTCCGCGGTTAGGC 61.359 60.000 27.15 18.21 0.00 3.93
630 635 0.952010 GTTCTTCCGCGGTTAGGCAA 60.952 55.000 27.15 9.99 0.00 4.52
631 636 0.035820 TTCTTCCGCGGTTAGGCAAT 60.036 50.000 27.15 0.00 0.00 3.56
632 637 0.825410 TCTTCCGCGGTTAGGCAATA 59.175 50.000 27.15 0.00 0.00 1.90
633 638 1.202486 TCTTCCGCGGTTAGGCAATAG 60.202 52.381 27.15 9.39 0.00 1.73
637 642 1.202486 CCGCGGTTAGGCAATAGAGAA 60.202 52.381 19.50 0.00 0.00 2.87
638 643 2.548067 CCGCGGTTAGGCAATAGAGAAT 60.548 50.000 19.50 0.00 0.00 2.40
639 644 3.305813 CCGCGGTTAGGCAATAGAGAATA 60.306 47.826 19.50 0.00 0.00 1.75
640 645 3.921021 CGCGGTTAGGCAATAGAGAATAG 59.079 47.826 0.00 0.00 0.00 1.73
641 646 4.558898 CGCGGTTAGGCAATAGAGAATAGT 60.559 45.833 0.00 0.00 0.00 2.12
707 715 1.398799 TTTCCCTCTCCTCCTCCTCT 58.601 55.000 0.00 0.00 0.00 3.69
720 728 4.247380 CCTCTGCGCCTCCCCATC 62.247 72.222 4.18 0.00 0.00 3.51
721 729 4.247380 CTCTGCGCCTCCCCATCC 62.247 72.222 4.18 0.00 0.00 3.51
942 963 2.276740 GCCCTGCCATGCTAAGGT 59.723 61.111 5.99 0.00 0.00 3.50
1428 1449 1.219393 CTCCTTTCTCCCTGACGCC 59.781 63.158 0.00 0.00 0.00 5.68
1582 1603 1.221566 CCGGTGCCACATCATGAGA 59.778 57.895 0.09 0.00 0.00 3.27
2055 2076 5.007823 CCTTCTTGATCAACAGATCATGAGC 59.992 44.000 17.70 1.78 45.61 4.26
2198 2219 4.083003 CGAGGTAGATAACTCTCCTGATGC 60.083 50.000 3.56 0.00 32.49 3.91
2201 2222 4.021544 GGTAGATAACTCTCCTGATGCTGG 60.022 50.000 0.00 0.00 32.66 4.85
2226 2247 2.116238 GTTGCCCCTGATAGTGGTCTA 58.884 52.381 0.00 0.00 0.00 2.59
2261 2282 1.877258 GCCAGATGCACCTAGAGATGC 60.877 57.143 0.00 6.64 42.40 3.91
2266 2287 2.975732 TGCACCTAGAGATGCTTCAG 57.024 50.000 12.81 0.00 42.55 3.02
2582 2603 0.249911 GCAGGTGTTTCTGAGACGGT 60.250 55.000 0.00 0.00 36.93 4.83
2595 2616 2.760385 ACGGTGGGAGAGCCTAGC 60.760 66.667 0.00 0.00 39.52 3.42
2815 2836 8.395633 GTGTTGTAGTGTAACAATGTTCTTTCT 58.604 33.333 0.22 0.56 41.18 2.52
2853 2874 6.936968 ACTAGAATGGTTCTGTTTAGTCCT 57.063 37.500 0.00 0.00 40.94 3.85
2982 3003 5.163652 TGCATTCAGAGCAATGAGATTTCTG 60.164 40.000 0.00 0.00 39.39 3.02
2984 3005 6.487960 CATTCAGAGCAATGAGATTTCTGTC 58.512 40.000 0.00 0.00 36.03 3.51
3207 3228 3.667360 GGCAAGCCAACTCATCATTTTT 58.333 40.909 6.14 0.00 35.81 1.94
3219 3240 8.949953 CAACTCATCATTTTTGCAATGTTTTTC 58.050 29.630 0.00 0.00 0.00 2.29
3229 3250 2.911102 GCAATGTTTTTCGCTAGCAGAC 59.089 45.455 16.45 5.83 0.00 3.51
3290 3311 6.431198 AAAACGTGGTATACTATTGCAAGG 57.569 37.500 4.94 2.82 0.00 3.61
3322 3343 7.228706 ACAACAAACTGGAAATGTAACCTCTAG 59.771 37.037 0.00 0.00 0.00 2.43
3437 3458 6.264832 CCGGACGTTTACAATGTGTATAGTA 58.735 40.000 0.00 0.00 32.20 1.82
3453 3474 6.154021 GTGTATAGTAAGGTTCTTGGAGACCA 59.846 42.308 0.00 0.00 0.00 4.02
3486 3507 6.169557 TCCTGAGCAAAGAAACTACAGTTA 57.830 37.500 0.00 0.00 37.25 2.24
3634 3656 0.415429 AAAGAGAGGAGCAGGAGGGA 59.585 55.000 0.00 0.00 0.00 4.20
3700 3722 5.509716 TCGTGGCCTATATATTGTATCGG 57.490 43.478 3.32 0.00 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.620374 CGCACAATCAGCTATCAAGTTCT 59.380 43.478 0.00 0.00 0.00 3.01
1 2 3.242543 CCGCACAATCAGCTATCAAGTTC 60.243 47.826 0.00 0.00 0.00 3.01
2 3 2.679837 CCGCACAATCAGCTATCAAGTT 59.320 45.455 0.00 0.00 0.00 2.66
3 4 2.283298 CCGCACAATCAGCTATCAAGT 58.717 47.619 0.00 0.00 0.00 3.16
4 5 2.283298 ACCGCACAATCAGCTATCAAG 58.717 47.619 0.00 0.00 0.00 3.02
5 6 2.279741 GACCGCACAATCAGCTATCAA 58.720 47.619 0.00 0.00 0.00 2.57
6 7 1.206849 TGACCGCACAATCAGCTATCA 59.793 47.619 0.00 0.00 0.00 2.15
7 8 1.594862 GTGACCGCACAATCAGCTATC 59.405 52.381 0.00 0.00 44.51 2.08
8 9 1.656652 GTGACCGCACAATCAGCTAT 58.343 50.000 0.00 0.00 44.51 2.97
9 10 3.137484 GTGACCGCACAATCAGCTA 57.863 52.632 0.00 0.00 44.51 3.32
10 11 3.972227 GTGACCGCACAATCAGCT 58.028 55.556 0.00 0.00 44.51 4.24
18 19 4.314440 TGGAGCCTGTGACCGCAC 62.314 66.667 0.00 0.00 45.35 5.34
19 20 4.314440 GTGGAGCCTGTGACCGCA 62.314 66.667 0.00 0.00 34.76 5.69
20 21 3.537206 AAGTGGAGCCTGTGACCGC 62.537 63.158 0.00 0.00 34.83 5.68
21 22 1.374758 GAAGTGGAGCCTGTGACCG 60.375 63.158 0.00 0.00 0.00 4.79
22 23 1.003233 GGAAGTGGAGCCTGTGACC 60.003 63.158 0.00 0.00 0.00 4.02
23 24 1.374758 CGGAAGTGGAGCCTGTGAC 60.375 63.158 0.00 0.00 0.00 3.67
24 25 2.583441 CCGGAAGTGGAGCCTGTGA 61.583 63.158 0.00 0.00 0.00 3.58
25 26 2.046892 CCGGAAGTGGAGCCTGTG 60.047 66.667 0.00 0.00 0.00 3.66
26 27 4.021925 GCCGGAAGTGGAGCCTGT 62.022 66.667 5.05 0.00 0.00 4.00
27 28 4.785453 GGCCGGAAGTGGAGCCTG 62.785 72.222 5.05 0.00 42.34 4.85
30 31 3.553095 AAGTGGCCGGAAGTGGAGC 62.553 63.158 5.05 0.00 0.00 4.70
31 32 1.073199 AAAGTGGCCGGAAGTGGAG 59.927 57.895 5.05 0.00 0.00 3.86
32 33 1.228124 CAAAGTGGCCGGAAGTGGA 60.228 57.895 5.05 0.00 0.00 4.02
33 34 0.250553 TACAAAGTGGCCGGAAGTGG 60.251 55.000 5.05 0.00 0.00 4.00
34 35 1.600023 TTACAAAGTGGCCGGAAGTG 58.400 50.000 5.05 0.00 0.00 3.16
35 36 1.951602 GTTTACAAAGTGGCCGGAAGT 59.048 47.619 5.05 0.00 0.00 3.01
36 37 2.227194 AGTTTACAAAGTGGCCGGAAG 58.773 47.619 5.05 0.00 0.00 3.46
37 38 2.351706 AGTTTACAAAGTGGCCGGAA 57.648 45.000 5.05 0.00 0.00 4.30
38 39 2.351706 AAGTTTACAAAGTGGCCGGA 57.648 45.000 5.05 0.00 0.00 5.14
39 40 3.181514 CGATAAGTTTACAAAGTGGCCGG 60.182 47.826 0.00 0.00 0.00 6.13
40 41 3.680937 TCGATAAGTTTACAAAGTGGCCG 59.319 43.478 0.00 0.00 0.00 6.13
41 42 5.813080 ATCGATAAGTTTACAAAGTGGCC 57.187 39.130 0.00 0.00 0.00 5.36
42 43 5.511729 GCAATCGATAAGTTTACAAAGTGGC 59.488 40.000 0.00 0.00 0.00 5.01
43 44 6.607689 TGCAATCGATAAGTTTACAAAGTGG 58.392 36.000 0.00 0.00 0.00 4.00
44 45 7.589587 TGTTGCAATCGATAAGTTTACAAAGTG 59.410 33.333 0.59 0.00 0.00 3.16
45 46 7.644490 TGTTGCAATCGATAAGTTTACAAAGT 58.356 30.769 0.59 0.00 0.00 2.66
46 47 8.673626 ATGTTGCAATCGATAAGTTTACAAAG 57.326 30.769 0.59 0.00 0.00 2.77
47 48 9.549509 GTATGTTGCAATCGATAAGTTTACAAA 57.450 29.630 0.59 0.00 0.00 2.83
48 49 8.722394 TGTATGTTGCAATCGATAAGTTTACAA 58.278 29.630 0.59 0.00 0.00 2.41
49 50 8.257830 TGTATGTTGCAATCGATAAGTTTACA 57.742 30.769 0.59 0.00 0.00 2.41
50 51 9.210426 CTTGTATGTTGCAATCGATAAGTTTAC 57.790 33.333 0.59 0.00 0.00 2.01
51 52 9.157104 TCTTGTATGTTGCAATCGATAAGTTTA 57.843 29.630 0.59 0.00 0.00 2.01
52 53 8.039603 TCTTGTATGTTGCAATCGATAAGTTT 57.960 30.769 0.59 0.00 0.00 2.66
53 54 7.609760 TCTTGTATGTTGCAATCGATAAGTT 57.390 32.000 0.59 0.00 0.00 2.66
54 55 7.609760 TTCTTGTATGTTGCAATCGATAAGT 57.390 32.000 0.59 0.00 0.00 2.24
55 56 9.162793 GAATTCTTGTATGTTGCAATCGATAAG 57.837 33.333 0.59 5.94 0.00 1.73
56 57 8.672815 TGAATTCTTGTATGTTGCAATCGATAA 58.327 29.630 0.59 0.00 0.00 1.75
57 58 8.207521 TGAATTCTTGTATGTTGCAATCGATA 57.792 30.769 0.59 0.00 0.00 2.92
58 59 7.087409 TGAATTCTTGTATGTTGCAATCGAT 57.913 32.000 0.59 0.00 0.00 3.59
59 60 6.493449 TGAATTCTTGTATGTTGCAATCGA 57.507 33.333 0.59 0.00 0.00 3.59
60 61 7.565450 TTTGAATTCTTGTATGTTGCAATCG 57.435 32.000 0.59 0.00 0.00 3.34
61 62 7.412237 GGCTTTGAATTCTTGTATGTTGCAATC 60.412 37.037 0.59 0.00 0.00 2.67
62 63 6.369615 GGCTTTGAATTCTTGTATGTTGCAAT 59.630 34.615 0.59 0.00 0.00 3.56
63 64 5.695816 GGCTTTGAATTCTTGTATGTTGCAA 59.304 36.000 7.05 0.00 0.00 4.08
64 65 5.229423 GGCTTTGAATTCTTGTATGTTGCA 58.771 37.500 7.05 0.00 0.00 4.08
65 66 4.627035 GGGCTTTGAATTCTTGTATGTTGC 59.373 41.667 7.05 0.00 0.00 4.17
66 67 5.170748 GGGGCTTTGAATTCTTGTATGTTG 58.829 41.667 7.05 0.00 0.00 3.33
67 68 4.222810 GGGGGCTTTGAATTCTTGTATGTT 59.777 41.667 7.05 0.00 0.00 2.71
68 69 3.769300 GGGGGCTTTGAATTCTTGTATGT 59.231 43.478 7.05 0.00 0.00 2.29
69 70 3.181487 CGGGGGCTTTGAATTCTTGTATG 60.181 47.826 7.05 0.00 0.00 2.39
70 71 3.023832 CGGGGGCTTTGAATTCTTGTAT 58.976 45.455 7.05 0.00 0.00 2.29
71 72 2.442413 CGGGGGCTTTGAATTCTTGTA 58.558 47.619 7.05 0.00 0.00 2.41
72 73 1.256812 CGGGGGCTTTGAATTCTTGT 58.743 50.000 7.05 0.00 0.00 3.16
73 74 0.532115 CCGGGGGCTTTGAATTCTTG 59.468 55.000 7.05 0.00 0.00 3.02
74 75 0.114364 ACCGGGGGCTTTGAATTCTT 59.886 50.000 6.32 0.00 0.00 2.52
75 76 0.996583 TACCGGGGGCTTTGAATTCT 59.003 50.000 6.32 0.00 0.00 2.40
76 77 1.389555 CTACCGGGGGCTTTGAATTC 58.610 55.000 6.32 0.00 0.00 2.17
77 78 0.683179 GCTACCGGGGGCTTTGAATT 60.683 55.000 6.32 0.00 0.00 2.17
78 79 1.076995 GCTACCGGGGGCTTTGAAT 60.077 57.895 6.32 0.00 0.00 2.57
79 80 1.858739 ATGCTACCGGGGGCTTTGAA 61.859 55.000 18.95 2.22 0.00 2.69
80 81 2.305607 ATGCTACCGGGGGCTTTGA 61.306 57.895 18.95 2.54 0.00 2.69
81 82 2.120909 CATGCTACCGGGGGCTTTG 61.121 63.158 18.95 13.44 0.00 2.77
82 83 2.275418 CATGCTACCGGGGGCTTT 59.725 61.111 18.95 6.75 0.00 3.51
83 84 3.809013 CCATGCTACCGGGGGCTT 61.809 66.667 18.95 11.70 0.00 4.35
103 104 1.863155 TTGACATCTTGGGCCCCTCC 61.863 60.000 22.27 1.69 0.00 4.30
104 105 0.394899 CTTGACATCTTGGGCCCCTC 60.395 60.000 22.27 4.52 0.00 4.30
105 106 1.693640 CTTGACATCTTGGGCCCCT 59.306 57.895 22.27 0.00 0.00 4.79
106 107 2.054453 GCTTGACATCTTGGGCCCC 61.054 63.158 22.27 1.27 0.00 5.80
107 108 2.054453 GGCTTGACATCTTGGGCCC 61.054 63.158 17.59 17.59 34.19 5.80
108 109 2.054453 GGGCTTGACATCTTGGGCC 61.054 63.158 0.00 0.00 38.92 5.80
109 110 2.054453 GGGGCTTGACATCTTGGGC 61.054 63.158 0.00 0.00 0.00 5.36
110 111 1.380380 GGGGGCTTGACATCTTGGG 60.380 63.158 0.00 0.00 0.00 4.12
111 112 0.682209 CTGGGGGCTTGACATCTTGG 60.682 60.000 0.00 0.00 0.00 3.61
112 113 0.329261 TCTGGGGGCTTGACATCTTG 59.671 55.000 0.00 0.00 0.00 3.02
113 114 0.329596 GTCTGGGGGCTTGACATCTT 59.670 55.000 0.00 0.00 0.00 2.40
114 115 1.566298 GGTCTGGGGGCTTGACATCT 61.566 60.000 0.00 0.00 32.84 2.90
115 116 1.077429 GGTCTGGGGGCTTGACATC 60.077 63.158 0.00 0.00 32.84 3.06
116 117 1.434513 TTGGTCTGGGGGCTTGACAT 61.435 55.000 0.00 0.00 32.84 3.06
117 118 1.650242 TTTGGTCTGGGGGCTTGACA 61.650 55.000 0.00 0.00 32.84 3.58
118 119 0.469144 TTTTGGTCTGGGGGCTTGAC 60.469 55.000 0.00 0.00 0.00 3.18
119 120 0.486879 ATTTTGGTCTGGGGGCTTGA 59.513 50.000 0.00 0.00 0.00 3.02
120 121 0.609662 CATTTTGGTCTGGGGGCTTG 59.390 55.000 0.00 0.00 0.00 4.01
121 122 0.545071 CCATTTTGGTCTGGGGGCTT 60.545 55.000 0.00 0.00 31.35 4.35
122 123 1.079073 CCATTTTGGTCTGGGGGCT 59.921 57.895 0.00 0.00 31.35 5.19
123 124 2.659063 GCCATTTTGGTCTGGGGGC 61.659 63.158 0.00 0.00 40.46 5.80
124 125 1.989508 GGCCATTTTGGTCTGGGGG 60.990 63.158 0.00 0.00 39.55 5.40
125 126 1.229145 TGGCCATTTTGGTCTGGGG 60.229 57.895 0.00 0.00 44.07 4.96
126 127 2.279842 CTGGCCATTTTGGTCTGGG 58.720 57.895 5.51 0.00 44.07 4.45
128 129 0.890683 GTCCTGGCCATTTTGGTCTG 59.109 55.000 5.51 0.00 44.07 3.51
129 130 0.482446 TGTCCTGGCCATTTTGGTCT 59.518 50.000 5.51 0.00 44.07 3.85
130 131 1.337118 TTGTCCTGGCCATTTTGGTC 58.663 50.000 5.51 1.96 43.98 4.02
131 132 1.693606 CTTTGTCCTGGCCATTTTGGT 59.306 47.619 5.51 0.00 40.46 3.67
132 133 1.002315 CCTTTGTCCTGGCCATTTTGG 59.998 52.381 5.51 3.56 41.55 3.28
133 134 1.969923 TCCTTTGTCCTGGCCATTTTG 59.030 47.619 5.51 0.00 0.00 2.44
134 135 2.397044 TCCTTTGTCCTGGCCATTTT 57.603 45.000 5.51 0.00 0.00 1.82
135 136 2.397044 TTCCTTTGTCCTGGCCATTT 57.603 45.000 5.51 0.00 0.00 2.32
136 137 2.568509 CAATTCCTTTGTCCTGGCCATT 59.431 45.455 5.51 0.00 0.00 3.16
137 138 2.181975 CAATTCCTTTGTCCTGGCCAT 58.818 47.619 5.51 0.00 0.00 4.40
138 139 1.133199 ACAATTCCTTTGTCCTGGCCA 60.133 47.619 4.71 4.71 45.55 5.36
139 140 1.632589 ACAATTCCTTTGTCCTGGCC 58.367 50.000 0.00 0.00 45.55 5.36
147 148 6.169094 TCAAGCTCTCTAGACAATTCCTTTG 58.831 40.000 0.00 0.00 41.36 2.77
148 149 6.365970 TCAAGCTCTCTAGACAATTCCTTT 57.634 37.500 0.00 0.00 0.00 3.11
149 150 5.626578 GCTCAAGCTCTCTAGACAATTCCTT 60.627 44.000 0.00 0.00 38.21 3.36
150 151 4.141959 GCTCAAGCTCTCTAGACAATTCCT 60.142 45.833 0.00 0.00 38.21 3.36
151 152 4.119136 GCTCAAGCTCTCTAGACAATTCC 58.881 47.826 0.00 0.00 38.21 3.01
152 153 4.753233 TGCTCAAGCTCTCTAGACAATTC 58.247 43.478 3.32 0.00 42.66 2.17
153 154 4.382901 CCTGCTCAAGCTCTCTAGACAATT 60.383 45.833 3.32 0.00 42.66 2.32
154 155 3.132646 CCTGCTCAAGCTCTCTAGACAAT 59.867 47.826 3.32 0.00 42.66 2.71
155 156 2.495270 CCTGCTCAAGCTCTCTAGACAA 59.505 50.000 3.32 0.00 42.66 3.18
156 157 2.098614 CCTGCTCAAGCTCTCTAGACA 58.901 52.381 3.32 0.00 42.66 3.41
157 158 2.099405 ACCTGCTCAAGCTCTCTAGAC 58.901 52.381 3.32 0.00 42.66 2.59
158 159 2.495270 CAACCTGCTCAAGCTCTCTAGA 59.505 50.000 3.32 0.00 42.66 2.43
159 160 2.495270 TCAACCTGCTCAAGCTCTCTAG 59.505 50.000 3.32 0.00 42.66 2.43
160 161 2.529632 TCAACCTGCTCAAGCTCTCTA 58.470 47.619 3.32 0.00 42.66 2.43
161 162 1.346062 TCAACCTGCTCAAGCTCTCT 58.654 50.000 3.32 0.00 42.66 3.10
162 163 2.008329 CATCAACCTGCTCAAGCTCTC 58.992 52.381 3.32 0.00 42.66 3.20
163 164 1.339824 CCATCAACCTGCTCAAGCTCT 60.340 52.381 3.32 0.00 42.66 4.09
164 165 1.093159 CCATCAACCTGCTCAAGCTC 58.907 55.000 3.32 0.00 42.66 4.09
165 166 0.694771 TCCATCAACCTGCTCAAGCT 59.305 50.000 3.32 0.00 42.66 3.74
166 167 1.404391 CATCCATCAACCTGCTCAAGC 59.596 52.381 0.00 0.00 42.50 4.01
167 168 2.719739 ACATCCATCAACCTGCTCAAG 58.280 47.619 0.00 0.00 0.00 3.02
168 169 2.885135 ACATCCATCAACCTGCTCAA 57.115 45.000 0.00 0.00 0.00 3.02
169 170 2.306805 AGAACATCCATCAACCTGCTCA 59.693 45.455 0.00 0.00 0.00 4.26
170 171 2.996631 AGAACATCCATCAACCTGCTC 58.003 47.619 0.00 0.00 0.00 4.26
171 172 3.087031 CAAGAACATCCATCAACCTGCT 58.913 45.455 0.00 0.00 0.00 4.24
172 173 2.165030 CCAAGAACATCCATCAACCTGC 59.835 50.000 0.00 0.00 0.00 4.85
173 174 3.689347 TCCAAGAACATCCATCAACCTG 58.311 45.455 0.00 0.00 0.00 4.00
174 175 3.331889 ACTCCAAGAACATCCATCAACCT 59.668 43.478 0.00 0.00 0.00 3.50
175 176 3.441572 CACTCCAAGAACATCCATCAACC 59.558 47.826 0.00 0.00 0.00 3.77
176 177 3.441572 CCACTCCAAGAACATCCATCAAC 59.558 47.826 0.00 0.00 0.00 3.18
177 178 3.330405 TCCACTCCAAGAACATCCATCAA 59.670 43.478 0.00 0.00 0.00 2.57
178 179 2.912295 TCCACTCCAAGAACATCCATCA 59.088 45.455 0.00 0.00 0.00 3.07
179 180 3.634397 TCCACTCCAAGAACATCCATC 57.366 47.619 0.00 0.00 0.00 3.51
180 181 3.331889 AGTTCCACTCCAAGAACATCCAT 59.668 43.478 5.76 0.00 43.89 3.41
181 182 2.711009 AGTTCCACTCCAAGAACATCCA 59.289 45.455 5.76 0.00 43.89 3.41
182 183 3.077359 CAGTTCCACTCCAAGAACATCC 58.923 50.000 5.76 0.00 43.89 3.51
183 184 3.077359 CCAGTTCCACTCCAAGAACATC 58.923 50.000 5.76 0.00 43.89 3.06
184 185 2.443255 ACCAGTTCCACTCCAAGAACAT 59.557 45.455 5.76 0.00 43.89 2.71
185 186 1.843851 ACCAGTTCCACTCCAAGAACA 59.156 47.619 5.76 0.00 43.89 3.18
186 187 2.640316 ACCAGTTCCACTCCAAGAAC 57.360 50.000 0.00 0.00 42.18 3.01
187 188 2.637872 CCTACCAGTTCCACTCCAAGAA 59.362 50.000 0.00 0.00 0.00 2.52
188 189 2.257207 CCTACCAGTTCCACTCCAAGA 58.743 52.381 0.00 0.00 0.00 3.02
189 190 1.339151 GCCTACCAGTTCCACTCCAAG 60.339 57.143 0.00 0.00 0.00 3.61
190 191 0.690762 GCCTACCAGTTCCACTCCAA 59.309 55.000 0.00 0.00 0.00 3.53
191 192 0.178903 AGCCTACCAGTTCCACTCCA 60.179 55.000 0.00 0.00 0.00 3.86
192 193 0.984995 AAGCCTACCAGTTCCACTCC 59.015 55.000 0.00 0.00 0.00 3.85
193 194 1.404315 CGAAGCCTACCAGTTCCACTC 60.404 57.143 0.00 0.00 0.00 3.51
194 195 0.608640 CGAAGCCTACCAGTTCCACT 59.391 55.000 0.00 0.00 0.00 4.00
195 196 3.139029 CGAAGCCTACCAGTTCCAC 57.861 57.895 0.00 0.00 0.00 4.02
209 210 1.135915 AGCTAGTCACCAGATGCGAAG 59.864 52.381 0.00 0.00 0.00 3.79
210 211 1.135139 GAGCTAGTCACCAGATGCGAA 59.865 52.381 0.00 0.00 0.00 4.70
211 212 0.741326 GAGCTAGTCACCAGATGCGA 59.259 55.000 0.00 0.00 0.00 5.10
212 213 0.593518 CGAGCTAGTCACCAGATGCG 60.594 60.000 0.00 0.00 0.00 4.73
213 214 0.741326 TCGAGCTAGTCACCAGATGC 59.259 55.000 0.00 0.00 0.00 3.91
214 215 3.379240 CAATCGAGCTAGTCACCAGATG 58.621 50.000 0.00 0.00 0.00 2.90
215 216 2.223923 GCAATCGAGCTAGTCACCAGAT 60.224 50.000 0.00 0.00 0.00 2.90
216 217 1.135139 GCAATCGAGCTAGTCACCAGA 59.865 52.381 0.00 0.00 0.00 3.86
217 218 1.134995 TGCAATCGAGCTAGTCACCAG 60.135 52.381 0.00 0.00 34.99 4.00
218 219 0.894835 TGCAATCGAGCTAGTCACCA 59.105 50.000 0.00 0.00 34.99 4.17
219 220 2.131183 GATGCAATCGAGCTAGTCACC 58.869 52.381 0.00 0.00 31.13 4.02
230 231 7.466670 AGGTGAGCCTAGTAAGATGCAATCG 62.467 48.000 0.00 0.00 46.41 3.34
231 232 4.061596 GGTGAGCCTAGTAAGATGCAATC 58.938 47.826 0.00 0.00 46.04 2.67
232 233 3.713764 AGGTGAGCCTAGTAAGATGCAAT 59.286 43.478 0.00 0.00 44.90 3.56
233 234 3.107601 AGGTGAGCCTAGTAAGATGCAA 58.892 45.455 0.00 0.00 44.90 4.08
234 235 2.432146 CAGGTGAGCCTAGTAAGATGCA 59.568 50.000 0.00 0.00 44.97 3.96
235 236 2.804933 GCAGGTGAGCCTAGTAAGATGC 60.805 54.545 0.00 0.00 44.97 3.91
236 237 3.104843 GCAGGTGAGCCTAGTAAGATG 57.895 52.381 0.00 0.00 44.97 2.90
248 249 4.335647 ACTTGCCGGGCAGGTGAG 62.336 66.667 32.65 23.65 46.65 3.51
253 254 3.850098 AACCTCACTTGCCGGGCAG 62.850 63.158 22.59 17.78 40.61 4.85
254 255 3.429372 AAACCTCACTTGCCGGGCA 62.429 57.895 19.77 19.77 36.47 5.36
255 256 2.597510 AAACCTCACTTGCCGGGC 60.598 61.111 13.32 13.32 0.00 6.13
256 257 0.537371 AAGAAACCTCACTTGCCGGG 60.537 55.000 2.18 0.00 0.00 5.73
257 258 0.875059 GAAGAAACCTCACTTGCCGG 59.125 55.000 0.00 0.00 0.00 6.13
258 259 1.884235 AGAAGAAACCTCACTTGCCG 58.116 50.000 0.00 0.00 0.00 5.69
259 260 4.214332 CACTAAGAAGAAACCTCACTTGCC 59.786 45.833 0.00 0.00 0.00 4.52
260 261 4.816925 ACACTAAGAAGAAACCTCACTTGC 59.183 41.667 0.00 0.00 0.00 4.01
261 262 6.927294 AACACTAAGAAGAAACCTCACTTG 57.073 37.500 0.00 0.00 0.00 3.16
262 263 8.652290 AGATAACACTAAGAAGAAACCTCACTT 58.348 33.333 0.00 0.00 0.00 3.16
263 264 8.196378 AGATAACACTAAGAAGAAACCTCACT 57.804 34.615 0.00 0.00 0.00 3.41
264 265 8.713271 CAAGATAACACTAAGAAGAAACCTCAC 58.287 37.037 0.00 0.00 0.00 3.51
265 266 8.429641 ACAAGATAACACTAAGAAGAAACCTCA 58.570 33.333 0.00 0.00 0.00 3.86
266 267 8.834749 ACAAGATAACACTAAGAAGAAACCTC 57.165 34.615 0.00 0.00 0.00 3.85
267 268 9.057089 CAACAAGATAACACTAAGAAGAAACCT 57.943 33.333 0.00 0.00 0.00 3.50
268 269 8.837389 ACAACAAGATAACACTAAGAAGAAACC 58.163 33.333 0.00 0.00 0.00 3.27
269 270 9.865484 GACAACAAGATAACACTAAGAAGAAAC 57.135 33.333 0.00 0.00 0.00 2.78
270 271 9.832445 AGACAACAAGATAACACTAAGAAGAAA 57.168 29.630 0.00 0.00 0.00 2.52
271 272 9.832445 AAGACAACAAGATAACACTAAGAAGAA 57.168 29.630 0.00 0.00 0.00 2.52
272 273 9.261180 CAAGACAACAAGATAACACTAAGAAGA 57.739 33.333 0.00 0.00 0.00 2.87
273 274 8.499162 CCAAGACAACAAGATAACACTAAGAAG 58.501 37.037 0.00 0.00 0.00 2.85
274 275 7.041372 GCCAAGACAACAAGATAACACTAAGAA 60.041 37.037 0.00 0.00 0.00 2.52
275 276 6.426937 GCCAAGACAACAAGATAACACTAAGA 59.573 38.462 0.00 0.00 0.00 2.10
276 277 6.428159 AGCCAAGACAACAAGATAACACTAAG 59.572 38.462 0.00 0.00 0.00 2.18
277 278 6.296026 AGCCAAGACAACAAGATAACACTAA 58.704 36.000 0.00 0.00 0.00 2.24
278 279 5.865085 AGCCAAGACAACAAGATAACACTA 58.135 37.500 0.00 0.00 0.00 2.74
279 280 4.718961 AGCCAAGACAACAAGATAACACT 58.281 39.130 0.00 0.00 0.00 3.55
280 281 5.215160 CAAGCCAAGACAACAAGATAACAC 58.785 41.667 0.00 0.00 0.00 3.32
281 282 4.887071 ACAAGCCAAGACAACAAGATAACA 59.113 37.500 0.00 0.00 0.00 2.41
282 283 5.239525 AGACAAGCCAAGACAACAAGATAAC 59.760 40.000 0.00 0.00 0.00 1.89
283 284 5.376625 AGACAAGCCAAGACAACAAGATAA 58.623 37.500 0.00 0.00 0.00 1.75
284 285 4.973168 AGACAAGCCAAGACAACAAGATA 58.027 39.130 0.00 0.00 0.00 1.98
285 286 3.825328 AGACAAGCCAAGACAACAAGAT 58.175 40.909 0.00 0.00 0.00 2.40
286 287 3.281727 AGACAAGCCAAGACAACAAGA 57.718 42.857 0.00 0.00 0.00 3.02
287 288 3.489738 CCAAGACAAGCCAAGACAACAAG 60.490 47.826 0.00 0.00 0.00 3.16
288 289 2.426738 CCAAGACAAGCCAAGACAACAA 59.573 45.455 0.00 0.00 0.00 2.83
289 290 2.023673 CCAAGACAAGCCAAGACAACA 58.976 47.619 0.00 0.00 0.00 3.33
290 291 2.024414 ACCAAGACAAGCCAAGACAAC 58.976 47.619 0.00 0.00 0.00 3.32
291 292 2.092429 AGACCAAGACAAGCCAAGACAA 60.092 45.455 0.00 0.00 0.00 3.18
292 293 1.490490 AGACCAAGACAAGCCAAGACA 59.510 47.619 0.00 0.00 0.00 3.41
293 294 2.262423 AGACCAAGACAAGCCAAGAC 57.738 50.000 0.00 0.00 0.00 3.01
294 295 2.439507 AGAAGACCAAGACAAGCCAAGA 59.560 45.455 0.00 0.00 0.00 3.02
295 296 2.856222 AGAAGACCAAGACAAGCCAAG 58.144 47.619 0.00 0.00 0.00 3.61
296 297 2.951642 CAAGAAGACCAAGACAAGCCAA 59.048 45.455 0.00 0.00 0.00 4.52
297 298 2.172505 TCAAGAAGACCAAGACAAGCCA 59.827 45.455 0.00 0.00 0.00 4.75
298 299 2.851195 TCAAGAAGACCAAGACAAGCC 58.149 47.619 0.00 0.00 0.00 4.35
299 300 4.153835 CAGATCAAGAAGACCAAGACAAGC 59.846 45.833 0.00 0.00 0.00 4.01
300 301 4.694509 CCAGATCAAGAAGACCAAGACAAG 59.305 45.833 0.00 0.00 0.00 3.16
301 302 4.645535 CCAGATCAAGAAGACCAAGACAA 58.354 43.478 0.00 0.00 0.00 3.18
302 303 3.557898 GCCAGATCAAGAAGACCAAGACA 60.558 47.826 0.00 0.00 0.00 3.41
303 304 3.006247 GCCAGATCAAGAAGACCAAGAC 58.994 50.000 0.00 0.00 0.00 3.01
304 305 2.909006 AGCCAGATCAAGAAGACCAAGA 59.091 45.455 0.00 0.00 0.00 3.02
305 306 3.347077 AGCCAGATCAAGAAGACCAAG 57.653 47.619 0.00 0.00 0.00 3.61
306 307 3.415212 CAAGCCAGATCAAGAAGACCAA 58.585 45.455 0.00 0.00 0.00 3.67
307 308 2.877300 GCAAGCCAGATCAAGAAGACCA 60.877 50.000 0.00 0.00 0.00 4.02
308 309 1.742268 GCAAGCCAGATCAAGAAGACC 59.258 52.381 0.00 0.00 0.00 3.85
309 310 2.709213 AGCAAGCCAGATCAAGAAGAC 58.291 47.619 0.00 0.00 0.00 3.01
310 311 3.341823 GAAGCAAGCCAGATCAAGAAGA 58.658 45.455 0.00 0.00 0.00 2.87
311 312 2.422832 GGAAGCAAGCCAGATCAAGAAG 59.577 50.000 0.00 0.00 0.00 2.85
312 313 2.040813 AGGAAGCAAGCCAGATCAAGAA 59.959 45.455 0.00 0.00 0.00 2.52
313 314 1.632409 AGGAAGCAAGCCAGATCAAGA 59.368 47.619 0.00 0.00 0.00 3.02
314 315 2.125773 AGGAAGCAAGCCAGATCAAG 57.874 50.000 0.00 0.00 0.00 3.02
315 316 2.165167 CAAGGAAGCAAGCCAGATCAA 58.835 47.619 0.00 0.00 0.00 2.57
316 317 1.830279 CAAGGAAGCAAGCCAGATCA 58.170 50.000 0.00 0.00 0.00 2.92
317 318 0.455005 GCAAGGAAGCAAGCCAGATC 59.545 55.000 0.00 0.00 0.00 2.75
318 319 0.039326 AGCAAGGAAGCAAGCCAGAT 59.961 50.000 0.00 0.00 36.85 2.90
319 320 0.892358 CAGCAAGGAAGCAAGCCAGA 60.892 55.000 0.00 0.00 36.85 3.86
320 321 1.585006 CAGCAAGGAAGCAAGCCAG 59.415 57.895 0.00 0.00 36.85 4.85
321 322 2.567497 GCAGCAAGGAAGCAAGCCA 61.567 57.895 0.00 0.00 36.85 4.75
322 323 2.260743 GCAGCAAGGAAGCAAGCC 59.739 61.111 0.00 0.00 36.85 4.35
323 324 2.260743 GGCAGCAAGGAAGCAAGC 59.739 61.111 0.00 0.00 37.17 4.01
324 325 2.263741 ACGGCAGCAAGGAAGCAAG 61.264 57.895 0.00 0.00 36.85 4.01
325 326 2.203337 ACGGCAGCAAGGAAGCAA 60.203 55.556 0.00 0.00 36.85 3.91
326 327 2.979676 CACGGCAGCAAGGAAGCA 60.980 61.111 0.00 0.00 36.85 3.91
327 328 4.410743 GCACGGCAGCAAGGAAGC 62.411 66.667 0.00 0.00 0.00 3.86
328 329 3.741476 GGCACGGCAGCAAGGAAG 61.741 66.667 0.00 0.00 35.83 3.46
329 330 4.269523 AGGCACGGCAGCAAGGAA 62.270 61.111 0.00 0.00 35.83 3.36
332 333 4.034258 CACAGGCACGGCAGCAAG 62.034 66.667 0.00 0.00 35.83 4.01
333 334 2.746412 ATACACAGGCACGGCAGCAA 62.746 55.000 0.00 0.00 35.83 3.91
334 335 3.252627 ATACACAGGCACGGCAGCA 62.253 57.895 0.00 0.00 35.83 4.41
335 336 2.436646 ATACACAGGCACGGCAGC 60.437 61.111 0.00 0.00 0.00 5.25
336 337 2.108514 CCATACACAGGCACGGCAG 61.109 63.158 0.00 0.00 0.00 4.85
337 338 2.046411 CCATACACAGGCACGGCA 60.046 61.111 0.00 0.00 0.00 5.69
338 339 2.046314 ACCATACACAGGCACGGC 60.046 61.111 0.00 0.00 0.00 5.68
339 340 1.449601 GGACCATACACAGGCACGG 60.450 63.158 0.00 0.00 0.00 4.94
340 341 1.809619 CGGACCATACACAGGCACG 60.810 63.158 0.00 0.00 0.00 5.34
341 342 1.449601 CCGGACCATACACAGGCAC 60.450 63.158 0.00 0.00 0.00 5.01
342 343 2.665089 CCCGGACCATACACAGGCA 61.665 63.158 0.73 0.00 0.00 4.75
343 344 2.189521 CCCGGACCATACACAGGC 59.810 66.667 0.73 0.00 0.00 4.85
344 345 2.189521 GCCCGGACCATACACAGG 59.810 66.667 0.73 0.00 0.00 4.00
345 346 1.024579 GTTGCCCGGACCATACACAG 61.025 60.000 0.73 0.00 0.00 3.66
346 347 1.003112 GTTGCCCGGACCATACACA 60.003 57.895 0.73 0.00 0.00 3.72
347 348 2.104253 CGTTGCCCGGACCATACAC 61.104 63.158 0.73 0.00 0.00 2.90
348 349 2.266372 CGTTGCCCGGACCATACA 59.734 61.111 0.73 0.00 0.00 2.29
349 350 3.199891 GCGTTGCCCGGACCATAC 61.200 66.667 0.73 0.72 36.94 2.39
350 351 3.707458 TGCGTTGCCCGGACCATA 61.707 61.111 0.73 0.00 36.94 2.74
357 358 4.368808 CTTCACGTGCGTTGCCCG 62.369 66.667 11.67 0.00 40.40 6.13
358 359 4.025401 CCTTCACGTGCGTTGCCC 62.025 66.667 11.67 0.00 0.00 5.36
359 360 2.331019 AAACCTTCACGTGCGTTGCC 62.331 55.000 11.67 0.00 0.00 4.52
360 361 1.063488 AAACCTTCACGTGCGTTGC 59.937 52.632 11.67 0.00 0.00 4.17
361 362 0.098025 ACAAACCTTCACGTGCGTTG 59.902 50.000 11.67 11.92 0.00 4.10
362 363 0.806241 AACAAACCTTCACGTGCGTT 59.194 45.000 11.67 10.00 0.00 4.84
363 364 0.098025 CAACAAACCTTCACGTGCGT 59.902 50.000 11.67 3.67 0.00 5.24
364 365 1.199852 GCAACAAACCTTCACGTGCG 61.200 55.000 11.67 4.07 0.00 5.34
365 366 0.179150 TGCAACAAACCTTCACGTGC 60.179 50.000 11.67 0.00 0.00 5.34
366 367 1.544686 GTGCAACAAACCTTCACGTG 58.455 50.000 9.94 9.94 36.32 4.49
367 368 0.454196 GGTGCAACAAACCTTCACGT 59.546 50.000 0.00 0.00 39.98 4.49
368 369 0.591236 CGGTGCAACAAACCTTCACG 60.591 55.000 0.98 0.00 39.98 4.35
369 370 0.736053 TCGGTGCAACAAACCTTCAC 59.264 50.000 0.98 0.00 39.98 3.18
370 371 0.736053 GTCGGTGCAACAAACCTTCA 59.264 50.000 0.98 0.00 39.98 3.02
371 372 0.736053 TGTCGGTGCAACAAACCTTC 59.264 50.000 0.98 0.00 39.98 3.46
372 373 1.336755 GATGTCGGTGCAACAAACCTT 59.663 47.619 0.98 0.00 39.98 3.50
373 374 0.951558 GATGTCGGTGCAACAAACCT 59.048 50.000 0.98 0.00 39.98 3.50
374 375 0.039527 GGATGTCGGTGCAACAAACC 60.040 55.000 0.98 1.94 39.98 3.27
375 376 0.665835 TGGATGTCGGTGCAACAAAC 59.334 50.000 0.98 0.00 39.98 2.93
376 377 0.665835 GTGGATGTCGGTGCAACAAA 59.334 50.000 0.98 0.00 39.98 2.83
377 378 0.464554 TGTGGATGTCGGTGCAACAA 60.465 50.000 0.98 0.00 39.98 2.83
378 379 0.250684 ATGTGGATGTCGGTGCAACA 60.251 50.000 0.98 0.00 39.98 3.33
379 380 0.168788 CATGTGGATGTCGGTGCAAC 59.831 55.000 0.00 0.00 0.00 4.17
380 381 1.585267 GCATGTGGATGTCGGTGCAA 61.585 55.000 0.00 0.00 33.09 4.08
381 382 2.039974 GCATGTGGATGTCGGTGCA 61.040 57.895 0.00 0.00 33.09 4.57
382 383 1.709147 GAGCATGTGGATGTCGGTGC 61.709 60.000 0.00 0.00 31.50 5.01
383 384 1.091771 GGAGCATGTGGATGTCGGTG 61.092 60.000 0.00 0.00 31.50 4.94
384 385 1.221840 GGAGCATGTGGATGTCGGT 59.778 57.895 0.00 0.00 31.50 4.69
385 386 1.884464 CGGAGCATGTGGATGTCGG 60.884 63.158 0.00 0.00 31.50 4.79
386 387 1.148157 GACGGAGCATGTGGATGTCG 61.148 60.000 0.00 0.00 31.50 4.35
387 388 1.148157 CGACGGAGCATGTGGATGTC 61.148 60.000 0.00 0.00 31.50 3.06
388 389 1.153568 CGACGGAGCATGTGGATGT 60.154 57.895 0.00 0.00 31.50 3.06
389 390 2.528743 GCGACGGAGCATGTGGATG 61.529 63.158 0.00 0.00 37.05 3.51
390 391 2.202932 GCGACGGAGCATGTGGAT 60.203 61.111 0.00 0.00 37.05 3.41
391 392 4.794439 CGCGACGGAGCATGTGGA 62.794 66.667 0.00 0.00 36.85 4.02
452 453 2.816672 GGGCACAAAGAGGAAGAAGAAG 59.183 50.000 0.00 0.00 0.00 2.85
519 524 6.349243 TCTTTACCAATTTACCTCGAGTGA 57.651 37.500 12.31 0.00 0.00 3.41
624 629 4.149598 TGCCGACTATTCTCTATTGCCTA 58.850 43.478 0.00 0.00 0.00 3.93
625 630 2.965831 TGCCGACTATTCTCTATTGCCT 59.034 45.455 0.00 0.00 0.00 4.75
627 632 6.390721 TCTATTGCCGACTATTCTCTATTGC 58.609 40.000 0.00 0.00 0.00 3.56
628 633 8.818141 TTTCTATTGCCGACTATTCTCTATTG 57.182 34.615 0.00 0.00 0.00 1.90
630 635 7.607250 CCTTTCTATTGCCGACTATTCTCTAT 58.393 38.462 0.00 0.00 0.00 1.98
631 636 6.516860 GCCTTTCTATTGCCGACTATTCTCTA 60.517 42.308 0.00 0.00 0.00 2.43
632 637 5.740513 GCCTTTCTATTGCCGACTATTCTCT 60.741 44.000 0.00 0.00 0.00 3.10
633 638 4.449405 GCCTTTCTATTGCCGACTATTCTC 59.551 45.833 0.00 0.00 0.00 2.87
637 642 3.838244 TGCCTTTCTATTGCCGACTAT 57.162 42.857 0.00 0.00 0.00 2.12
638 643 3.620427 TTGCCTTTCTATTGCCGACTA 57.380 42.857 0.00 0.00 0.00 2.59
639 644 2.489938 TTGCCTTTCTATTGCCGACT 57.510 45.000 0.00 0.00 0.00 4.18
640 645 3.378427 AGAATTGCCTTTCTATTGCCGAC 59.622 43.478 0.00 0.00 34.21 4.79
641 646 3.620488 AGAATTGCCTTTCTATTGCCGA 58.380 40.909 0.00 0.00 34.21 5.54
804 817 3.521796 GGATTGGAAGGCGGCAGC 61.522 66.667 13.08 0.00 44.18 5.25
805 818 1.821332 GAGGATTGGAAGGCGGCAG 60.821 63.158 13.08 0.00 0.00 4.85
806 819 2.272146 GAGGATTGGAAGGCGGCA 59.728 61.111 13.08 0.00 0.00 5.69
814 830 1.003580 GTGCTGTTCCAGAGGATTGGA 59.996 52.381 0.00 0.00 45.34 3.53
857 873 2.911143 GGCTCGTCATGGATGGGT 59.089 61.111 0.00 0.00 0.00 4.51
1428 1449 1.868997 CTGCCTGTACCTTGTTGCG 59.131 57.895 0.00 0.00 0.00 4.85
1998 2019 0.179111 ACAGTATCCCATGTGCGTCG 60.179 55.000 0.00 0.00 0.00 5.12
2055 2076 3.182967 GCCTTCGAATCTACTCACACTG 58.817 50.000 0.00 0.00 0.00 3.66
2198 2219 1.341080 ATCAGGGGCAACAAAACCAG 58.659 50.000 0.00 0.00 39.74 4.00
2201 2222 2.231235 CCACTATCAGGGGCAACAAAAC 59.769 50.000 0.00 0.00 28.07 2.43
2226 2247 0.392998 CTGGCGCACTATTTCCAGGT 60.393 55.000 10.83 0.00 41.71 4.00
2261 2282 0.250989 TGGTAAAACCGGGCCTGAAG 60.251 55.000 15.09 0.00 42.58 3.02
2266 2287 0.963856 CCTTCTGGTAAAACCGGGCC 60.964 60.000 6.32 0.00 44.85 5.80
2582 2603 3.019003 GCGTTGCTAGGCTCTCCCA 62.019 63.158 5.58 0.00 35.39 4.37
2595 2616 1.192534 GTTCTCGAAGAACCTGCGTTG 59.807 52.381 13.53 0.00 46.68 4.10
2853 2874 2.228480 GGTACAACAGGCCCCAGGA 61.228 63.158 0.00 0.00 0.00 3.86
2982 3003 9.250624 AGTTTCTATGAATTATAAGCAGTCGAC 57.749 33.333 7.70 7.70 0.00 4.20
2984 3005 9.469807 AGAGTTTCTATGAATTATAAGCAGTCG 57.530 33.333 0.00 0.00 0.00 4.18
3106 3127 5.526506 AAATGAGCATAAAAGATCAGGCC 57.473 39.130 0.00 0.00 37.35 5.19
3207 3228 2.551887 TCTGCTAGCGAAAAACATTGCA 59.448 40.909 10.77 0.00 31.76 4.08
3219 3240 3.890128 TCTATTTCATCGTCTGCTAGCG 58.110 45.455 10.77 5.22 0.00 4.26
3290 3311 8.592155 GTTACATTTCCAGTTTGTTGTTTTCTC 58.408 33.333 0.00 0.00 0.00 2.87
3322 3343 3.334583 TGCCATAGTCAGGTGTTTCTC 57.665 47.619 0.00 0.00 0.00 2.87
3453 3474 4.914983 TCTTTGCTCAGGAATGAGTGATT 58.085 39.130 7.07 0.00 38.16 2.57
3486 3507 8.181487 GTGTGTACACGATTGAATACTTATGT 57.819 34.615 20.61 0.00 37.10 2.29
3504 3525 6.704493 TGATCTTCAAGTTACTTGGTGTGTAC 59.296 38.462 22.82 10.55 41.33 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.