Multiple sequence alignment - TraesCS3D01G343800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G343800 chr3D 100.000 6060 0 0 1 6060 455876458 455870399 0.000000e+00 11191.0
1 TraesCS3D01G343800 chr3D 88.750 80 2 2 3649 3722 188001246 188001168 2.330000e-14 91.6
2 TraesCS3D01G343800 chr3B 94.345 2617 83 18 3 2580 602361046 602358456 0.000000e+00 3952.0
3 TraesCS3D01G343800 chr3B 93.370 1101 59 5 4420 5507 602356878 602355779 0.000000e+00 1616.0
4 TraesCS3D01G343800 chr3B 91.595 809 42 12 2526 3325 602358425 602357634 0.000000e+00 1094.0
5 TraesCS3D01G343800 chr3B 94.633 559 24 4 3722 4278 602357428 602356874 0.000000e+00 861.0
6 TraesCS3D01G343800 chr3B 94.493 345 14 2 5721 6060 602332258 602331914 1.500000e-145 527.0
7 TraesCS3D01G343800 chr3B 94.100 339 15 2 5727 6060 602353334 602352996 1.510000e-140 510.0
8 TraesCS3D01G343800 chr3B 94.681 188 10 0 5500 5687 602353525 602353338 5.940000e-75 292.0
9 TraesCS3D01G343800 chr3B 87.552 241 24 6 5259 5498 602336379 602336144 2.150000e-69 274.0
10 TraesCS3D01G343800 chr3B 82.400 250 9 6 3400 3640 602357632 602357409 1.040000e-42 185.0
11 TraesCS3D01G343800 chr3B 96.296 54 2 0 5447 5500 602353686 602353633 8.370000e-14 89.8
12 TraesCS3D01G343800 chr3A 93.458 2629 111 20 1 2580 598560546 598557930 0.000000e+00 3845.0
13 TraesCS3D01G343800 chr3A 95.624 1074 47 0 4404 5477 598555994 598554921 0.000000e+00 1724.0
14 TraesCS3D01G343800 chr3A 94.521 584 21 9 3722 4301 598556569 598555993 0.000000e+00 891.0
15 TraesCS3D01G343800 chr3A 87.740 677 33 13 2987 3640 598557199 598556550 0.000000e+00 745.0
16 TraesCS3D01G343800 chr3A 90.730 507 31 9 2482 2988 598557928 598557438 0.000000e+00 662.0
17 TraesCS3D01G343800 chr3A 89.722 360 21 7 5714 6060 598554519 598554163 4.310000e-121 446.0
18 TraesCS3D01G343800 chr3A 93.878 196 9 1 5500 5692 598554808 598554613 5.940000e-75 292.0
19 TraesCS3D01G343800 chr3A 90.741 108 9 1 4300 4406 156231223 156231330 6.330000e-30 143.0
20 TraesCS3D01G343800 chr3A 90.123 81 2 1 3649 3723 237389123 237389203 3.860000e-17 100.0
21 TraesCS3D01G343800 chr4A 91.964 112 6 3 4297 4405 539752687 539752576 2.920000e-33 154.0
22 TraesCS3D01G343800 chr4A 88.750 80 3 1 3650 3723 420521520 420521441 6.470000e-15 93.5
23 TraesCS3D01G343800 chr5A 91.743 109 7 2 4300 4406 651518341 651518449 3.780000e-32 150.0
24 TraesCS3D01G343800 chr4D 89.831 118 8 4 4292 4406 65128003 65128119 1.360000e-31 148.0
25 TraesCS3D01G343800 chr4D 90.741 108 8 2 4300 4405 360762932 360763039 6.330000e-30 143.0
26 TraesCS3D01G343800 chr4D 87.302 126 13 3 4300 4423 110115365 110115241 2.280000e-29 141.0
27 TraesCS3D01G343800 chr4D 85.366 82 3 4 3650 3723 44443019 44442939 6.510000e-10 76.8
28 TraesCS3D01G343800 chr2A 90.090 111 7 4 4300 4407 597850139 597850030 2.280000e-29 141.0
29 TraesCS3D01G343800 chr2A 91.250 80 1 1 3650 3723 271907319 271907240 2.990000e-18 104.0
30 TraesCS3D01G343800 chrUn 89.908 109 9 2 4300 4406 288604690 288604582 8.190000e-29 139.0
31 TraesCS3D01G343800 chr1A 88.034 117 10 4 4300 4413 578480364 578480249 1.060000e-27 135.0
32 TraesCS3D01G343800 chr5B 89.286 84 3 1 3649 3726 419484863 419484780 3.860000e-17 100.0
33 TraesCS3D01G343800 chr6D 83.158 95 6 5 3650 3736 376909371 376909279 1.810000e-10 78.7
34 TraesCS3D01G343800 chr7B 85.366 82 3 4 3650 3723 109185546 109185626 6.510000e-10 76.8
35 TraesCS3D01G343800 chr5D 85.366 82 3 4 3650 3723 475009740 475009660 6.510000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G343800 chr3D 455870399 455876458 6059 True 11191.000000 11191 100.0000 1 6060 1 chr3D.!!$R2 6059
1 TraesCS3D01G343800 chr3B 602352996 602361046 8050 True 1074.975000 3952 92.6775 3 6060 8 chr3B.!!$R2 6057
2 TraesCS3D01G343800 chr3B 602331914 602336379 4465 True 400.500000 527 91.0225 5259 6060 2 chr3B.!!$R1 801
3 TraesCS3D01G343800 chr3A 598554163 598560546 6383 True 1229.285714 3845 92.2390 1 6060 7 chr3A.!!$R1 6059

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
698 741 0.606401 CCAGCGCTTCTCCAGGAAAA 60.606 55.0 7.5 0.0 33.07 2.29 F
1968 2030 0.179059 TGGAGCTTGTGTGCGAAGAA 60.179 50.0 0.0 0.0 38.13 2.52 F
2562 2724 0.606401 ATTGGGACCTCAGTTGCACG 60.606 55.0 0.0 0.0 0.00 5.34 F
3401 3818 0.473886 GGATAGGGCAGGCTAAGGGA 60.474 60.0 0.0 0.0 0.00 4.20 F
3655 4081 0.460284 CTATGAAACGCACGCCTCCT 60.460 55.0 0.0 0.0 0.00 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2461 2523 0.316204 GCAGCAACTGAACCTTGCAT 59.684 50.000 5.96 0.0 45.48 3.96 R
3086 3493 0.031716 AGACAGAGCCTGCCCTATGA 60.032 55.000 2.50 0.0 34.37 2.15 R
3638 4064 0.460284 CTAGGAGGCGTGCGTTTCAT 60.460 55.000 0.00 0.0 0.00 2.57 R
5026 5496 1.005215 CCCTCCAGCTTCAGGTTCATT 59.995 52.381 6.91 0.0 0.00 2.57 R
5546 10529 0.606401 CATGGACCTGTGGCGTCTTT 60.606 55.000 0.00 0.0 0.00 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.856982 TCACCAACCAACCCAGGAAT 59.143 50.000 0.00 0.00 0.00 3.01
20 21 2.066592 TCACCAACCAACCCAGGAATA 58.933 47.619 0.00 0.00 0.00 1.75
21 22 2.447429 TCACCAACCAACCCAGGAATAA 59.553 45.455 0.00 0.00 0.00 1.40
396 398 3.760035 GGTGGAGAGCGGCGAGAA 61.760 66.667 12.98 0.00 0.00 2.87
631 660 4.489771 GGGCCCATCCTCGGTGTG 62.490 72.222 19.95 0.00 34.39 3.82
680 722 4.455877 ACGGATGAAAAATCTGTGTTCTCC 59.544 41.667 0.00 0.00 36.38 3.71
698 741 0.606401 CCAGCGCTTCTCCAGGAAAA 60.606 55.000 7.50 0.00 33.07 2.29
765 808 1.913762 CCACACGACCCCTCTTCCT 60.914 63.158 0.00 0.00 0.00 3.36
775 818 3.764466 CTCTTCCTCCAGCGCGGT 61.764 66.667 4.23 4.23 35.57 5.68
776 819 3.302347 CTCTTCCTCCAGCGCGGTT 62.302 63.158 8.73 0.00 35.57 4.44
877 938 0.951040 GCCTCTCCCTGTCAACAACG 60.951 60.000 0.00 0.00 0.00 4.10
879 940 0.679505 CTCTCCCTGTCAACAACGGA 59.320 55.000 0.00 0.23 36.22 4.69
881 942 0.944311 CTCCCTGTCAACAACGGACG 60.944 60.000 0.00 0.00 38.10 4.79
882 943 1.959226 CCCTGTCAACAACGGACGG 60.959 63.158 0.00 0.00 40.55 4.79
883 944 3.637714 CTGTCAACAACGGACGGG 58.362 61.111 0.00 0.00 37.87 5.28
884 945 1.959226 CTGTCAACAACGGACGGGG 60.959 63.158 0.00 0.00 37.87 5.73
885 946 2.667199 GTCAACAACGGACGGGGG 60.667 66.667 0.00 0.00 0.00 5.40
886 947 4.629523 TCAACAACGGACGGGGGC 62.630 66.667 0.00 0.00 0.00 5.80
887 948 4.636435 CAACAACGGACGGGGGCT 62.636 66.667 0.00 0.00 0.00 5.19
910 972 2.383855 CCCCTCGTTTCTCTCTCATCT 58.616 52.381 0.00 0.00 0.00 2.90
928 990 0.750182 CTCACGGTCTCCTCCTCCTC 60.750 65.000 0.00 0.00 0.00 3.71
929 991 1.208844 TCACGGTCTCCTCCTCCTCT 61.209 60.000 0.00 0.00 0.00 3.69
930 992 0.750182 CACGGTCTCCTCCTCCTCTC 60.750 65.000 0.00 0.00 0.00 3.20
931 993 1.152839 CGGTCTCCTCCTCCTCTCC 60.153 68.421 0.00 0.00 0.00 3.71
932 994 1.641552 CGGTCTCCTCCTCCTCTCCT 61.642 65.000 0.00 0.00 0.00 3.69
1785 1847 1.221840 CTGCTACGTGCCCAAGGAT 59.778 57.895 0.00 0.00 42.00 3.24
1809 1871 1.980765 GTCTGCCCCATGGAGATATCA 59.019 52.381 15.22 0.55 0.00 2.15
1896 1958 3.958798 AGAGGAGCACGGTTAGCTATTTA 59.041 43.478 0.00 0.00 43.58 1.40
1908 1970 7.037438 CGGTTAGCTATTTAGAAGGTTGTACA 58.963 38.462 0.00 0.00 0.00 2.90
1968 2030 0.179059 TGGAGCTTGTGTGCGAAGAA 60.179 50.000 0.00 0.00 38.13 2.52
2406 2468 2.895372 GCCGCCAACACCTATCCG 60.895 66.667 0.00 0.00 0.00 4.18
2444 2506 7.807907 ACTTTCCGCTTCTTAATTACATGTTTG 59.192 33.333 2.30 0.00 0.00 2.93
2461 2523 7.721402 ACATGTTTGTTTATCTTAGTTTGGCA 58.279 30.769 0.00 0.00 29.55 4.92
2480 2542 4.641777 GCAAGGTTCAGTTGCTGC 57.358 55.556 0.58 0.00 45.67 5.25
2491 2553 1.211969 GTTGCTGCCATGCTCTGTG 59.788 57.895 0.00 0.00 0.00 3.66
2507 2569 2.813754 TCTGTGTCTGTGCCTAATTTGC 59.186 45.455 0.00 0.00 0.00 3.68
2539 2601 2.096174 TGTTAAGTGGTGAAACACGCAC 59.904 45.455 12.15 12.15 45.80 5.34
2562 2724 0.606401 ATTGGGACCTCAGTTGCACG 60.606 55.000 0.00 0.00 0.00 5.34
2589 2751 9.046296 CGTAGTAGATAAGATTTGAGGCAAAAT 57.954 33.333 0.00 0.00 36.90 1.82
2608 2770 5.600908 AAATTTTGCTGACATGATGTTGC 57.399 34.783 14.55 14.55 33.15 4.17
2632 2794 5.665916 ATGAAGGAGCTTTGGTAATTTGG 57.334 39.130 0.00 0.00 0.00 3.28
2638 2801 6.288294 AGGAGCTTTGGTAATTTGGTTTTTC 58.712 36.000 0.00 0.00 0.00 2.29
2662 2825 3.467103 AGGATACCATTTGTTATGGGGCT 59.533 43.478 8.53 0.00 43.32 5.19
2669 2832 1.709578 TTGTTATGGGGCTGTTTGCA 58.290 45.000 0.00 0.00 45.15 4.08
2678 2841 3.524014 CTGTTTGCACAGTGGCCA 58.476 55.556 0.00 0.00 44.96 5.36
2730 2893 2.294512 CTCAGCCTATGTGTGCGATAGA 59.705 50.000 0.00 0.00 39.76 1.98
2820 2983 8.150827 AGTATTCATGCTGTATACATATGGGT 57.849 34.615 21.01 15.27 34.39 4.51
2821 2984 8.260818 AGTATTCATGCTGTATACATATGGGTC 58.739 37.037 21.01 13.37 34.39 4.46
2822 2985 6.686484 TTCATGCTGTATACATATGGGTCT 57.314 37.500 21.01 0.00 0.00 3.85
2823 2986 6.686484 TCATGCTGTATACATATGGGTCTT 57.314 37.500 21.01 0.00 0.00 3.01
2824 2987 6.701340 TCATGCTGTATACATATGGGTCTTC 58.299 40.000 21.01 0.00 0.00 2.87
2825 2988 6.269769 TCATGCTGTATACATATGGGTCTTCA 59.730 38.462 21.01 0.00 0.00 3.02
2826 2989 6.101650 TGCTGTATACATATGGGTCTTCAG 57.898 41.667 5.91 8.63 0.00 3.02
2827 2990 5.838521 TGCTGTATACATATGGGTCTTCAGA 59.161 40.000 5.91 0.00 0.00 3.27
2828 2991 6.159988 GCTGTATACATATGGGTCTTCAGAC 58.840 44.000 5.91 0.00 44.04 3.51
2829 2992 6.015010 GCTGTATACATATGGGTCTTCAGACT 60.015 42.308 5.91 0.00 44.20 3.24
2830 2993 7.176865 GCTGTATACATATGGGTCTTCAGACTA 59.823 40.741 5.91 0.00 44.20 2.59
2831 2994 9.249053 CTGTATACATATGGGTCTTCAGACTAT 57.751 37.037 5.91 5.07 44.20 2.12
2832 2995 9.025041 TGTATACATATGGGTCTTCAGACTATG 57.975 37.037 7.80 9.26 44.20 2.23
2833 2996 9.244292 GTATACATATGGGTCTTCAGACTATGA 57.756 37.037 16.13 5.94 44.20 2.15
2834 2997 8.727100 ATACATATGGGTCTTCAGACTATGAA 57.273 34.615 16.13 0.00 45.79 2.57
2880 3043 7.726033 ATAGAGTTATGGTTCTGTGAAGAGT 57.274 36.000 0.00 0.00 0.00 3.24
2927 3090 7.604927 GTGGTTGTGTCAGTCACCTATATAAAA 59.395 37.037 0.00 0.00 45.61 1.52
2946 3109 5.914898 AAAAGGCAGTTGTGTAACTCTTT 57.085 34.783 0.00 0.00 45.12 2.52
2949 3112 6.619801 AAGGCAGTTGTGTAACTCTTTAAG 57.380 37.500 0.00 0.00 45.12 1.85
2959 3122 6.127869 TGTGTAACTCTTTAAGCAAGCAACAA 60.128 34.615 0.00 0.00 38.04 2.83
2973 3136 8.156994 AGCAAGCAACAAATAATTGAACATTT 57.843 26.923 0.00 0.00 38.94 2.32
3073 3480 1.394618 AGGTTAGTTTGGCACGCAAA 58.605 45.000 0.00 0.00 0.00 3.68
3129 3536 8.644216 TCTCTGTGACTAATTTGTGGTTAGTTA 58.356 33.333 0.00 0.00 41.21 2.24
3163 3570 6.776116 TGTCGAAGTACATATAGAGTTGGGAT 59.224 38.462 0.00 0.00 0.00 3.85
3231 3647 6.425114 GTGCTGACATGATATCGGAATTAAGT 59.575 38.462 0.00 0.00 0.00 2.24
3244 3660 7.781548 TCGGAATTAAGTAGCTTTGGTAATC 57.218 36.000 0.00 0.00 0.00 1.75
3289 3706 3.494254 TGGGGTGGTTTCCGCAGT 61.494 61.111 1.84 0.00 43.70 4.40
3292 3709 2.203294 GGTGGTTTCCGCAGTGGT 60.203 61.111 0.00 0.00 39.52 4.16
3331 3748 1.065926 CAGCAACATGGACTCAGCCTA 60.066 52.381 0.00 0.00 0.00 3.93
3371 3788 0.870393 GCCTCATGTGTGCATATCCG 59.130 55.000 0.00 0.00 33.30 4.18
3392 3809 1.131638 TAAGGCACAGGATAGGGCAG 58.868 55.000 0.00 0.00 0.00 4.85
3396 3813 1.410850 GCACAGGATAGGGCAGGCTA 61.411 60.000 0.00 0.00 0.00 3.93
3401 3818 0.473886 GGATAGGGCAGGCTAAGGGA 60.474 60.000 0.00 0.00 0.00 4.20
3507 3933 4.125703 CTGAAGAGTTTGAGTTGTGCTCT 58.874 43.478 0.00 0.00 44.41 4.09
3517 3943 1.016627 GTTGTGCTCTGACTTGTGCA 58.983 50.000 0.00 0.00 34.63 4.57
3518 3944 1.605710 GTTGTGCTCTGACTTGTGCAT 59.394 47.619 0.00 0.00 38.44 3.96
3533 3959 5.423610 ACTTGTGCATAAGTCAGTCTCCTAT 59.576 40.000 21.72 0.00 36.16 2.57
3534 3960 6.607600 ACTTGTGCATAAGTCAGTCTCCTATA 59.392 38.462 21.72 0.00 36.16 1.31
3535 3961 7.288852 ACTTGTGCATAAGTCAGTCTCCTATAT 59.711 37.037 21.72 0.00 36.16 0.86
3536 3962 8.706322 TTGTGCATAAGTCAGTCTCCTATATA 57.294 34.615 0.00 0.00 0.00 0.86
3537 3963 8.706322 TGTGCATAAGTCAGTCTCCTATATAA 57.294 34.615 0.00 0.00 0.00 0.98
3538 3964 9.143155 TGTGCATAAGTCAGTCTCCTATATAAA 57.857 33.333 0.00 0.00 0.00 1.40
3539 3965 9.632807 GTGCATAAGTCAGTCTCCTATATAAAG 57.367 37.037 0.00 0.00 0.00 1.85
3540 3966 8.807118 TGCATAAGTCAGTCTCCTATATAAAGG 58.193 37.037 0.00 0.00 38.06 3.11
3541 3967 8.254508 GCATAAGTCAGTCTCCTATATAAAGGG 58.745 40.741 0.00 0.00 37.24 3.95
3542 3968 6.673839 AAGTCAGTCTCCTATATAAAGGGC 57.326 41.667 0.00 0.00 37.24 5.19
3543 3969 5.716979 AGTCAGTCTCCTATATAAAGGGCA 58.283 41.667 0.00 0.00 37.24 5.36
3544 3970 5.777732 AGTCAGTCTCCTATATAAAGGGCAG 59.222 44.000 0.00 0.00 37.24 4.85
3545 3971 5.540719 GTCAGTCTCCTATATAAAGGGCAGT 59.459 44.000 0.00 0.00 37.24 4.40
3546 3972 6.042208 GTCAGTCTCCTATATAAAGGGCAGTT 59.958 42.308 0.00 0.00 37.24 3.16
3547 3973 6.042093 TCAGTCTCCTATATAAAGGGCAGTTG 59.958 42.308 0.00 0.00 37.24 3.16
3548 3974 5.905913 AGTCTCCTATATAAAGGGCAGTTGT 59.094 40.000 0.00 0.00 37.24 3.32
3549 3975 5.992217 GTCTCCTATATAAAGGGCAGTTGTG 59.008 44.000 0.00 0.00 37.24 3.33
3645 4071 9.803130 CAATAGTTCAATATCTGCTATGAAACG 57.197 33.333 0.00 0.00 0.00 3.60
3646 4072 6.292389 AGTTCAATATCTGCTATGAAACGC 57.708 37.500 0.00 0.00 0.00 4.84
3647 4073 5.817296 AGTTCAATATCTGCTATGAAACGCA 59.183 36.000 0.00 0.00 34.54 5.24
3648 4074 5.657470 TCAATATCTGCTATGAAACGCAC 57.343 39.130 0.00 0.00 31.95 5.34
3649 4075 4.209080 TCAATATCTGCTATGAAACGCACG 59.791 41.667 0.00 0.00 31.95 5.34
3650 4076 0.652592 ATCTGCTATGAAACGCACGC 59.347 50.000 0.00 0.00 31.95 5.34
3651 4077 1.060937 CTGCTATGAAACGCACGCC 59.939 57.895 0.00 0.00 31.95 5.68
3652 4078 1.361668 CTGCTATGAAACGCACGCCT 61.362 55.000 0.00 0.00 31.95 5.52
3653 4079 1.348594 GCTATGAAACGCACGCCTC 59.651 57.895 0.00 0.00 0.00 4.70
3654 4080 2.006772 CTATGAAACGCACGCCTCC 58.993 57.895 0.00 0.00 0.00 4.30
3655 4081 0.460284 CTATGAAACGCACGCCTCCT 60.460 55.000 0.00 0.00 0.00 3.69
3656 4082 0.818938 TATGAAACGCACGCCTCCTA 59.181 50.000 0.00 0.00 0.00 2.94
3657 4083 0.460284 ATGAAACGCACGCCTCCTAG 60.460 55.000 0.00 0.00 0.00 3.02
3658 4084 1.810030 GAAACGCACGCCTCCTAGG 60.810 63.158 0.82 0.82 38.80 3.02
3659 4085 2.221906 GAAACGCACGCCTCCTAGGA 62.222 60.000 11.98 11.98 37.67 2.94
3660 4086 2.227089 AAACGCACGCCTCCTAGGAG 62.227 60.000 29.27 29.27 41.31 3.69
3688 4114 8.819643 GTGTAACTACAACTCTCTCTTGAAAT 57.180 34.615 0.00 0.00 38.04 2.17
3689 4115 8.704234 GTGTAACTACAACTCTCTCTTGAAATG 58.296 37.037 0.00 0.00 38.04 2.32
3690 4116 8.638873 TGTAACTACAACTCTCTCTTGAAATGA 58.361 33.333 0.00 0.00 32.40 2.57
3691 4117 9.477484 GTAACTACAACTCTCTCTTGAAATGAA 57.523 33.333 0.00 0.00 0.00 2.57
3692 4118 8.964476 AACTACAACTCTCTCTTGAAATGAAA 57.036 30.769 0.00 0.00 0.00 2.69
3693 4119 8.371770 ACTACAACTCTCTCTTGAAATGAAAC 57.628 34.615 0.00 0.00 0.00 2.78
3694 4120 6.292389 ACAACTCTCTCTTGAAATGAAACG 57.708 37.500 0.00 0.00 0.00 3.60
3695 4121 4.999751 ACTCTCTCTTGAAATGAAACGC 57.000 40.909 0.00 0.00 0.00 4.84
3696 4122 4.380531 ACTCTCTCTTGAAATGAAACGCA 58.619 39.130 0.00 0.00 0.00 5.24
3697 4123 4.212214 ACTCTCTCTTGAAATGAAACGCAC 59.788 41.667 0.00 0.00 0.00 5.34
3698 4124 3.184379 TCTCTCTTGAAATGAAACGCACG 59.816 43.478 0.00 0.00 0.00 5.34
3699 4125 1.971962 CTCTTGAAATGAAACGCACGC 59.028 47.619 0.00 0.00 0.00 5.34
3700 4126 1.601903 TCTTGAAATGAAACGCACGCT 59.398 42.857 0.00 0.00 0.00 5.07
3701 4127 1.971962 CTTGAAATGAAACGCACGCTC 59.028 47.619 0.00 0.00 0.00 5.03
3702 4128 1.225855 TGAAATGAAACGCACGCTCT 58.774 45.000 0.00 0.00 0.00 4.09
3703 4129 1.194547 TGAAATGAAACGCACGCTCTC 59.805 47.619 0.00 0.00 0.00 3.20
3704 4130 1.194547 GAAATGAAACGCACGCTCTCA 59.805 47.619 0.00 0.00 0.00 3.27
3705 4131 1.442769 AATGAAACGCACGCTCTCAT 58.557 45.000 0.00 0.00 0.00 2.90
3706 4132 0.723414 ATGAAACGCACGCTCTCATG 59.277 50.000 0.00 0.00 0.00 3.07
3707 4133 1.225854 GAAACGCACGCTCTCATGC 60.226 57.895 0.00 0.00 38.52 4.06
3716 4142 3.865914 GCTCTCATGCGTTTTCTCG 57.134 52.632 0.00 0.00 0.00 4.04
3717 4143 1.350193 GCTCTCATGCGTTTTCTCGA 58.650 50.000 0.00 0.00 0.00 4.04
3718 4144 1.726791 GCTCTCATGCGTTTTCTCGAA 59.273 47.619 0.00 0.00 0.00 3.71
3719 4145 2.157668 GCTCTCATGCGTTTTCTCGAAA 59.842 45.455 0.00 0.00 0.00 3.46
3720 4146 3.363970 GCTCTCATGCGTTTTCTCGAAAA 60.364 43.478 0.93 0.93 37.90 2.29
3721 4147 4.772434 CTCTCATGCGTTTTCTCGAAAAA 58.228 39.130 6.41 0.00 41.37 1.94
3754 4180 9.905713 CAATATCTGCTATATAAAGGGCCTTTA 57.094 33.333 34.25 34.25 39.73 1.85
3758 4184 6.787957 TCTGCTATATAAAGGGCCTTTACTCT 59.212 38.462 34.72 23.69 38.51 3.24
3802 4229 1.308216 AGGGGCTAGTTGAGGGCAT 60.308 57.895 0.00 0.00 0.00 4.40
3825 4252 0.465460 TTGCCGCTGGTCTTCAAACT 60.465 50.000 0.00 0.00 0.00 2.66
3943 4370 7.125391 TGCCTAATTCTGAATTAAACTCCCAT 58.875 34.615 20.00 0.00 33.26 4.00
3944 4371 7.068593 TGCCTAATTCTGAATTAAACTCCCATG 59.931 37.037 20.00 8.19 33.26 3.66
4098 4526 6.917533 AGGTAGAAATTCTTGCATTGACTTG 58.082 36.000 0.00 0.00 0.00 3.16
4129 4559 4.986659 AGAAACTTTGCAACTCATTGATGC 59.013 37.500 0.00 5.48 43.59 3.91
4143 4573 8.121305 ACTCATTGATGCAAGTTTTATGGTTA 57.879 30.769 0.00 0.00 0.00 2.85
4211 4641 7.823745 AGTTTAATAGGCATTATGGGAAGTG 57.176 36.000 0.00 0.00 0.00 3.16
4247 4677 6.126863 TCATAATGTTCTCCTTCACACCTT 57.873 37.500 0.00 0.00 0.00 3.50
4253 4683 5.123227 TGTTCTCCTTCACACCTTACTTTG 58.877 41.667 0.00 0.00 0.00 2.77
4313 4779 8.701908 ACTATATGAATTACTACCTCCGTTCA 57.298 34.615 0.00 0.00 0.00 3.18
4314 4780 8.574737 ACTATATGAATTACTACCTCCGTTCAC 58.425 37.037 0.00 0.00 0.00 3.18
4315 4781 5.934402 ATGAATTACTACCTCCGTTCACT 57.066 39.130 0.00 0.00 0.00 3.41
4316 4782 5.733620 TGAATTACTACCTCCGTTCACTT 57.266 39.130 0.00 0.00 0.00 3.16
4317 4783 6.105397 TGAATTACTACCTCCGTTCACTTT 57.895 37.500 0.00 0.00 0.00 2.66
4318 4784 6.527423 TGAATTACTACCTCCGTTCACTTTT 58.473 36.000 0.00 0.00 0.00 2.27
4319 4785 7.669427 TGAATTACTACCTCCGTTCACTTTTA 58.331 34.615 0.00 0.00 0.00 1.52
4320 4786 8.316214 TGAATTACTACCTCCGTTCACTTTTAT 58.684 33.333 0.00 0.00 0.00 1.40
4321 4787 9.807649 GAATTACTACCTCCGTTCACTTTTATA 57.192 33.333 0.00 0.00 0.00 0.98
4323 4789 9.813446 ATTACTACCTCCGTTCACTTTTATAAG 57.187 33.333 0.00 0.00 37.40 1.73
4324 4790 6.637657 ACTACCTCCGTTCACTTTTATAAGG 58.362 40.000 0.00 0.00 35.61 2.69
4325 4791 4.259356 ACCTCCGTTCACTTTTATAAGGC 58.741 43.478 0.00 0.00 35.61 4.35
4326 4792 3.308866 CCTCCGTTCACTTTTATAAGGCG 59.691 47.826 0.00 0.00 35.61 5.52
4327 4793 3.929094 TCCGTTCACTTTTATAAGGCGT 58.071 40.909 0.00 0.00 35.61 5.68
4328 4794 4.317488 TCCGTTCACTTTTATAAGGCGTT 58.683 39.130 0.00 0.00 35.61 4.84
4329 4795 4.152759 TCCGTTCACTTTTATAAGGCGTTG 59.847 41.667 0.97 0.00 35.61 4.10
4330 4796 4.083696 CCGTTCACTTTTATAAGGCGTTGT 60.084 41.667 0.97 0.00 35.61 3.32
4331 4797 5.120519 CCGTTCACTTTTATAAGGCGTTGTA 59.879 40.000 0.97 0.00 35.61 2.41
4332 4798 6.238508 CGTTCACTTTTATAAGGCGTTGTAG 58.761 40.000 0.97 0.00 35.61 2.74
4333 4799 5.789710 TCACTTTTATAAGGCGTTGTAGC 57.210 39.130 0.97 0.00 35.61 3.58
4334 4800 5.239351 TCACTTTTATAAGGCGTTGTAGCA 58.761 37.500 0.97 0.00 39.27 3.49
4335 4801 5.878116 TCACTTTTATAAGGCGTTGTAGCAT 59.122 36.000 0.97 0.00 39.27 3.79
4336 4802 6.373216 TCACTTTTATAAGGCGTTGTAGCATT 59.627 34.615 0.97 0.00 43.80 3.56
4337 4803 7.027161 CACTTTTATAAGGCGTTGTAGCATTT 58.973 34.615 0.97 0.00 41.57 2.32
4338 4804 7.218204 CACTTTTATAAGGCGTTGTAGCATTTC 59.782 37.037 0.97 0.00 41.57 2.17
4339 4805 6.745159 TTTATAAGGCGTTGTAGCATTTCA 57.255 33.333 0.97 0.00 41.57 2.69
4340 4806 4.882671 ATAAGGCGTTGTAGCATTTCAG 57.117 40.909 0.97 0.00 41.57 3.02
4341 4807 2.472695 AGGCGTTGTAGCATTTCAGA 57.527 45.000 0.00 0.00 39.27 3.27
4342 4808 2.076863 AGGCGTTGTAGCATTTCAGAC 58.923 47.619 0.00 0.00 39.27 3.51
4343 4809 1.804151 GGCGTTGTAGCATTTCAGACA 59.196 47.619 0.00 0.00 39.27 3.41
4344 4810 2.412847 GGCGTTGTAGCATTTCAGACAC 60.413 50.000 0.00 0.00 39.27 3.67
4345 4811 2.223144 GCGTTGTAGCATTTCAGACACA 59.777 45.455 0.00 0.00 37.05 3.72
4346 4812 3.665323 GCGTTGTAGCATTTCAGACACAG 60.665 47.826 0.00 0.00 37.05 3.66
4347 4813 3.494626 CGTTGTAGCATTTCAGACACAGT 59.505 43.478 0.00 0.00 0.00 3.55
4348 4814 4.609113 CGTTGTAGCATTTCAGACACAGTG 60.609 45.833 0.00 0.00 0.00 3.66
4349 4815 2.807967 TGTAGCATTTCAGACACAGTGC 59.192 45.455 0.00 0.00 0.00 4.40
4350 4816 1.971481 AGCATTTCAGACACAGTGCA 58.029 45.000 0.00 0.00 35.17 4.57
4351 4817 2.300433 AGCATTTCAGACACAGTGCAA 58.700 42.857 0.00 0.00 35.17 4.08
4352 4818 2.689471 AGCATTTCAGACACAGTGCAAA 59.311 40.909 0.00 0.00 35.17 3.68
4353 4819 3.130869 AGCATTTCAGACACAGTGCAAAA 59.869 39.130 0.00 0.00 35.17 2.44
4354 4820 3.243643 GCATTTCAGACACAGTGCAAAAC 59.756 43.478 0.00 0.00 33.09 2.43
4355 4821 4.422840 CATTTCAGACACAGTGCAAAACA 58.577 39.130 0.00 0.00 0.00 2.83
4356 4822 3.763097 TTCAGACACAGTGCAAAACAG 57.237 42.857 0.00 0.00 0.00 3.16
4357 4823 2.710377 TCAGACACAGTGCAAAACAGT 58.290 42.857 0.00 0.00 0.00 3.55
4358 4824 3.081061 TCAGACACAGTGCAAAACAGTT 58.919 40.909 0.00 0.00 0.00 3.16
4359 4825 3.126858 TCAGACACAGTGCAAAACAGTTC 59.873 43.478 0.00 0.00 0.00 3.01
4360 4826 3.127548 CAGACACAGTGCAAAACAGTTCT 59.872 43.478 0.00 0.00 0.00 3.01
4361 4827 4.332543 CAGACACAGTGCAAAACAGTTCTA 59.667 41.667 0.00 0.00 0.00 2.10
4362 4828 5.008019 CAGACACAGTGCAAAACAGTTCTAT 59.992 40.000 0.00 0.00 0.00 1.98
4363 4829 5.590259 AGACACAGTGCAAAACAGTTCTATT 59.410 36.000 0.00 0.00 0.00 1.73
4364 4830 6.095440 AGACACAGTGCAAAACAGTTCTATTT 59.905 34.615 0.00 0.00 0.00 1.40
4365 4831 6.265577 ACACAGTGCAAAACAGTTCTATTTC 58.734 36.000 0.00 0.00 0.00 2.17
4366 4832 6.127758 ACACAGTGCAAAACAGTTCTATTTCA 60.128 34.615 0.00 0.00 0.00 2.69
4367 4833 6.415867 CACAGTGCAAAACAGTTCTATTTCAG 59.584 38.462 0.00 0.00 0.00 3.02
4368 4834 6.095440 ACAGTGCAAAACAGTTCTATTTCAGT 59.905 34.615 0.00 0.00 0.00 3.41
4369 4835 6.974622 CAGTGCAAAACAGTTCTATTTCAGTT 59.025 34.615 0.00 0.00 0.00 3.16
4370 4836 6.974622 AGTGCAAAACAGTTCTATTTCAGTTG 59.025 34.615 0.00 0.00 0.00 3.16
4371 4837 6.751888 GTGCAAAACAGTTCTATTTCAGTTGT 59.248 34.615 0.00 0.00 0.00 3.32
4372 4838 6.972328 TGCAAAACAGTTCTATTTCAGTTGTC 59.028 34.615 0.00 0.00 0.00 3.18
4373 4839 7.148086 TGCAAAACAGTTCTATTTCAGTTGTCT 60.148 33.333 0.00 0.00 0.00 3.41
4374 4840 7.166473 GCAAAACAGTTCTATTTCAGTTGTCTG 59.834 37.037 0.00 0.00 42.54 3.51
4392 4858 8.068893 GTTGTCTGAAACGACTTATAAAGTGA 57.931 34.615 0.00 0.00 43.03 3.41
4393 4859 8.545420 GTTGTCTGAAACGACTTATAAAGTGAA 58.455 33.333 0.00 0.00 43.03 3.18
4394 4860 8.068893 TGTCTGAAACGACTTATAAAGTGAAC 57.931 34.615 0.00 0.00 43.03 3.18
4395 4861 7.096353 TGTCTGAAACGACTTATAAAGTGAACG 60.096 37.037 0.00 0.00 43.03 3.95
4396 4862 6.364165 TCTGAAACGACTTATAAAGTGAACGG 59.636 38.462 0.00 0.00 43.03 4.44
4397 4863 6.215121 TGAAACGACTTATAAAGTGAACGGA 58.785 36.000 0.00 0.00 43.03 4.69
4398 4864 6.364165 TGAAACGACTTATAAAGTGAACGGAG 59.636 38.462 0.00 0.00 43.03 4.63
4399 4865 4.741342 ACGACTTATAAAGTGAACGGAGG 58.259 43.478 0.00 0.00 43.03 4.30
4400 4866 4.110482 CGACTTATAAAGTGAACGGAGGG 58.890 47.826 0.00 0.00 43.03 4.30
4401 4867 4.142315 CGACTTATAAAGTGAACGGAGGGA 60.142 45.833 0.00 0.00 43.03 4.20
4402 4868 5.340439 ACTTATAAAGTGAACGGAGGGAG 57.660 43.478 0.00 0.00 41.01 4.30
4403 4869 4.776308 ACTTATAAAGTGAACGGAGGGAGT 59.224 41.667 0.00 0.00 41.01 3.85
4404 4870 5.954150 ACTTATAAAGTGAACGGAGGGAGTA 59.046 40.000 0.00 0.00 41.01 2.59
4405 4871 6.610425 ACTTATAAAGTGAACGGAGGGAGTAT 59.390 38.462 0.00 0.00 41.01 2.12
4406 4872 3.889520 AAAGTGAACGGAGGGAGTATC 57.110 47.619 0.00 0.00 0.00 2.24
4407 4873 2.830651 AGTGAACGGAGGGAGTATCT 57.169 50.000 0.00 0.00 33.73 1.98
4408 4874 3.103080 AGTGAACGGAGGGAGTATCTT 57.897 47.619 0.00 0.00 33.73 2.40
4409 4875 3.442076 AGTGAACGGAGGGAGTATCTTT 58.558 45.455 0.00 0.00 33.73 2.52
4410 4876 3.838903 AGTGAACGGAGGGAGTATCTTTT 59.161 43.478 0.00 0.00 33.73 2.27
4411 4877 5.021458 AGTGAACGGAGGGAGTATCTTTTA 58.979 41.667 0.00 0.00 33.73 1.52
4412 4878 5.661759 AGTGAACGGAGGGAGTATCTTTTAT 59.338 40.000 0.00 0.00 33.73 1.40
4413 4879 6.156429 AGTGAACGGAGGGAGTATCTTTTATT 59.844 38.462 0.00 0.00 33.73 1.40
4414 4880 7.343833 AGTGAACGGAGGGAGTATCTTTTATTA 59.656 37.037 0.00 0.00 33.73 0.98
4415 4881 8.148999 GTGAACGGAGGGAGTATCTTTTATTAT 58.851 37.037 0.00 0.00 33.73 1.28
4416 4882 8.711170 TGAACGGAGGGAGTATCTTTTATTATT 58.289 33.333 0.00 0.00 33.73 1.40
4417 4883 9.557061 GAACGGAGGGAGTATCTTTTATTATTT 57.443 33.333 0.00 0.00 33.73 1.40
4418 4884 9.916360 AACGGAGGGAGTATCTTTTATTATTTT 57.084 29.630 0.00 0.00 33.73 1.82
4419 4885 9.916360 ACGGAGGGAGTATCTTTTATTATTTTT 57.084 29.630 0.00 0.00 33.73 1.94
4501 4967 7.500992 TGGCTGAATTACTCAATTAGGTCTAG 58.499 38.462 0.00 0.00 34.44 2.43
4516 4982 7.828508 TTAGGTCTAGCGGTTAATCTTGATA 57.171 36.000 0.00 0.00 0.00 2.15
4521 4987 7.201145 GTCTAGCGGTTAATCTTGATACTTCA 58.799 38.462 0.00 0.00 0.00 3.02
4554 5020 4.099573 CCTATAATCTCAAGGGACACGTGT 59.900 45.833 23.64 23.64 0.00 4.49
4699 5165 2.717580 TAAGTGTGCGTCCTGTACTG 57.282 50.000 0.00 0.00 33.83 2.74
4704 5170 2.666508 GTGTGCGTCCTGTACTGTATTG 59.333 50.000 0.00 0.00 33.83 1.90
4705 5171 2.268298 GTGCGTCCTGTACTGTATTGG 58.732 52.381 0.00 0.00 0.00 3.16
4711 5177 4.122776 GTCCTGTACTGTATTGGCATGAG 58.877 47.826 0.00 0.00 0.00 2.90
4715 5181 3.452264 TGTACTGTATTGGCATGAGCTCT 59.548 43.478 16.19 0.00 41.70 4.09
4717 5183 4.970860 ACTGTATTGGCATGAGCTCTAT 57.029 40.909 16.19 4.05 41.70 1.98
4718 5184 4.639334 ACTGTATTGGCATGAGCTCTATG 58.361 43.478 16.19 16.68 41.70 2.23
4729 5195 5.725042 GCATGAGCTCTATGTGTTAACAACG 60.725 44.000 16.19 0.00 37.57 4.10
4764 5230 4.498894 AGTAGTTATACCAGGGGTTTGC 57.501 45.455 0.00 0.00 37.09 3.68
4789 5255 9.952188 GCTTACCTTCATTTCAATAATAGTTCC 57.048 33.333 0.00 0.00 0.00 3.62
4930 5400 5.505181 TCTACTTTCAGCAAAGAGGGATT 57.495 39.130 3.70 0.00 41.60 3.01
4975 5445 3.967326 CCATGATAGGTGGGTTCTGTAGA 59.033 47.826 0.00 0.00 32.98 2.59
4978 5448 1.861982 TAGGTGGGTTCTGTAGAGCC 58.138 55.000 6.25 6.25 43.68 4.70
5063 5533 3.454812 GGAGGGATCAGTTGGCTAAGTTA 59.545 47.826 0.00 0.00 0.00 2.24
5361 5840 6.820656 GTCTTCATGTATTTCACTGTGGATCT 59.179 38.462 8.11 0.00 0.00 2.75
5478 5957 0.313672 TTGTTCATCGCCAGGCAAAC 59.686 50.000 13.30 10.28 0.00 2.93
5498 10481 2.590007 GGCCGCTCATAGCACTGG 60.590 66.667 0.00 0.00 42.58 4.00
5546 10529 0.173481 GCAGCATCCTGTACGAGACA 59.827 55.000 0.00 0.00 41.26 3.41
5573 10556 2.806434 CCACAGGTCCATGAATTCCAA 58.194 47.619 2.27 0.00 0.00 3.53
5642 10694 3.005539 AGAGTGCCTCGGCCACAT 61.006 61.111 2.24 0.00 41.09 3.21
5681 11002 0.789383 GAAAATGACTGGCGCGTTCG 60.789 55.000 8.43 0.00 39.07 3.95
5743 11153 1.151668 CCAGCAGCAGAACACTGTAC 58.848 55.000 0.00 0.00 37.47 2.90
5745 11155 1.797046 CAGCAGCAGAACACTGTACAG 59.203 52.381 21.44 21.44 37.47 2.74
5783 11196 2.683968 TCGATATAAATCCCGCTGTGC 58.316 47.619 0.00 0.00 0.00 4.57
5807 11222 5.556382 CGCACAGATAAATTAACTACGCCAG 60.556 44.000 0.00 0.00 0.00 4.85
5809 11224 6.509677 GCACAGATAAATTAACTACGCCAGTC 60.510 42.308 0.00 0.00 36.04 3.51
5866 11283 4.250305 CGGCTCCCATAACCCGGG 62.250 72.222 22.25 22.25 46.03 5.73
6040 11465 2.108362 GGTATGAACCCGCTCCCG 59.892 66.667 0.00 0.00 40.21 5.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
523 526 0.242825 CCGTTAACTCGCCTCACTCA 59.757 55.000 3.71 0.00 0.00 3.41
580 599 2.202623 ATCCGACGTCGCAGAAGC 60.203 61.111 31.73 0.00 40.38 3.86
581 600 1.934956 CGATCCGACGTCGCAGAAG 60.935 63.158 31.73 17.86 39.69 2.85
582 601 2.099638 CGATCCGACGTCGCAGAA 59.900 61.111 31.73 16.53 39.69 3.02
680 722 0.801251 CTTTTCCTGGAGAAGCGCTG 59.199 55.000 12.58 0.00 35.40 5.18
760 803 2.815647 GAACCGCGCTGGAGGAAG 60.816 66.667 22.10 0.00 42.00 3.46
761 804 3.296709 GAGAACCGCGCTGGAGGAA 62.297 63.158 22.10 0.00 42.00 3.36
762 805 3.760035 GAGAACCGCGCTGGAGGA 61.760 66.667 22.10 0.00 42.00 3.71
775 818 1.192146 CGAACCAGGTCCAGGGAGAA 61.192 60.000 5.14 0.00 0.00 2.87
776 819 1.609501 CGAACCAGGTCCAGGGAGA 60.610 63.158 5.14 0.00 0.00 3.71
910 972 1.208844 AGAGGAGGAGGAGACCGTGA 61.209 60.000 0.00 0.00 34.73 4.35
931 993 4.292178 GATGAGCGGCGGGGAGAG 62.292 72.222 9.78 0.00 0.00 3.20
1713 1775 1.260561 GCGGCATAGTAATTGTCACCG 59.739 52.381 0.00 0.00 42.19 4.94
1785 1847 2.039787 TCCATGGGGCAGACCGTA 59.960 61.111 13.02 0.00 41.60 4.02
1809 1871 5.209818 TGTCGTTGATTCTGAAGTAGGTT 57.790 39.130 0.00 0.00 0.00 3.50
1896 1958 1.002544 GCTGGAGCTGTACAACCTTCT 59.997 52.381 0.00 0.00 38.21 2.85
1908 1970 1.798626 TGGAGTCATATGCTGGAGCT 58.201 50.000 0.00 0.00 42.66 4.09
1968 2030 2.317973 GAGTACTTAATCTCGGCCCCT 58.682 52.381 0.00 0.00 0.00 4.79
2280 2342 2.353109 GCAATTCCTTGACTTTCCTGCC 60.353 50.000 0.00 0.00 34.04 4.85
2391 2453 1.520787 GGTCGGATAGGTGTTGGCG 60.521 63.158 0.00 0.00 0.00 5.69
2394 2456 3.198068 CTGAATGGTCGGATAGGTGTTG 58.802 50.000 0.00 0.00 30.94 3.33
2444 2506 5.807011 CCTTGCATGCCAAACTAAGATAAAC 59.193 40.000 16.68 0.00 31.94 2.01
2461 2523 0.316204 GCAGCAACTGAACCTTGCAT 59.684 50.000 5.96 0.00 45.48 3.96
2480 2542 1.303799 GGCACAGACACAGAGCATGG 61.304 60.000 0.00 0.00 0.00 3.66
2491 2553 1.165270 ACCGCAAATTAGGCACAGAC 58.835 50.000 3.32 0.00 0.00 3.51
2507 2569 5.531634 TCACCACTTAACAGTAACTAACCG 58.468 41.667 0.00 0.00 0.00 4.44
2539 2601 1.815003 GCAACTGAGGTCCCAATTCTG 59.185 52.381 0.00 0.00 0.00 3.02
2562 2724 5.529791 TGCCTCAAATCTTATCTACTACGC 58.470 41.667 0.00 0.00 0.00 4.42
2589 2751 3.729862 TGCAACATCATGTCAGCAAAA 57.270 38.095 13.78 0.00 38.02 2.44
2608 2770 5.870978 CCAAATTACCAAAGCTCCTTCATTG 59.129 40.000 0.00 0.00 0.00 2.82
2632 2794 7.700656 CCATAACAAATGGTATCCTCGAAAAAC 59.299 37.037 0.00 0.00 34.56 2.43
2638 2801 4.072131 CCCCATAACAAATGGTATCCTCG 58.928 47.826 3.49 0.00 37.48 4.63
2662 2825 1.042003 ACATGGCCACTGTGCAAACA 61.042 50.000 8.16 0.00 0.00 2.83
2669 2832 0.823356 GGTTGTCACATGGCCACTGT 60.823 55.000 8.16 11.51 0.00 3.55
2678 2841 0.670162 GCTGTTGCTGGTTGTCACAT 59.330 50.000 0.00 0.00 36.03 3.21
2730 2893 1.547372 GGATGTGCAAACATGAGGCTT 59.453 47.619 0.00 0.00 0.00 4.35
2822 2985 5.441718 AATTGGGCTCTTCATAGTCTGAA 57.558 39.130 0.00 0.00 41.61 3.02
2823 2986 6.560003 TTAATTGGGCTCTTCATAGTCTGA 57.440 37.500 0.00 0.00 0.00 3.27
2824 2987 7.814264 ATTTAATTGGGCTCTTCATAGTCTG 57.186 36.000 0.00 0.00 0.00 3.51
2825 2988 9.566432 CTAATTTAATTGGGCTCTTCATAGTCT 57.434 33.333 0.00 0.00 0.00 3.24
2826 2989 8.787852 CCTAATTTAATTGGGCTCTTCATAGTC 58.212 37.037 7.13 0.00 34.00 2.59
2827 2990 8.502738 TCCTAATTTAATTGGGCTCTTCATAGT 58.497 33.333 14.18 0.00 40.38 2.12
2828 2991 8.924511 TCCTAATTTAATTGGGCTCTTCATAG 57.075 34.615 14.18 0.00 40.38 2.23
2829 2992 9.707957 TTTCCTAATTTAATTGGGCTCTTCATA 57.292 29.630 14.18 0.00 40.38 2.15
2830 2993 8.608185 TTTCCTAATTTAATTGGGCTCTTCAT 57.392 30.769 14.18 0.00 40.38 2.57
2831 2994 8.429237 TTTTCCTAATTTAATTGGGCTCTTCA 57.571 30.769 14.18 0.00 40.38 3.02
2834 2997 9.936329 TCTATTTTCCTAATTTAATTGGGCTCT 57.064 29.630 14.18 3.30 40.38 4.09
2836 2999 9.715119 ACTCTATTTTCCTAATTTAATTGGGCT 57.285 29.630 14.18 3.31 40.38 5.19
2908 3071 6.156256 ACTGCCTTTTATATAGGTGACTGACA 59.844 38.462 0.00 0.00 43.88 3.58
2927 3090 4.515567 GCTTAAAGAGTTACACAACTGCCT 59.484 41.667 0.00 0.00 45.18 4.75
2946 3109 8.830201 ATGTTCAATTATTTGTTGCTTGCTTA 57.170 26.923 0.00 0.00 34.32 3.09
2949 3112 9.532697 CTAAATGTTCAATTATTTGTTGCTTGC 57.467 29.630 0.00 0.00 34.32 4.01
3045 3452 3.649023 TGCCAAACTAACCTAGGACAGAA 59.351 43.478 17.98 0.00 0.00 3.02
3073 3480 2.743183 GCCCTATGACAGCAATCGAACT 60.743 50.000 0.00 0.00 0.00 3.01
3086 3493 0.031716 AGACAGAGCCTGCCCTATGA 60.032 55.000 2.50 0.00 34.37 2.15
3129 3536 9.557061 TCTATATGTACTTCGACACTTGATAGT 57.443 33.333 0.00 0.00 34.00 2.12
3133 3540 7.860918 ACTCTATATGTACTTCGACACTTGA 57.139 36.000 0.00 0.00 30.52 3.02
3163 3570 8.323567 TCGTATATACCATATGTACCACAGAGA 58.676 37.037 7.30 0.00 30.62 3.10
3231 3647 5.626142 TCAACAACCAGATTACCAAAGCTA 58.374 37.500 0.00 0.00 28.03 3.32
3244 3660 2.879103 ATGGTACCCTCAACAACCAG 57.121 50.000 10.07 0.00 44.78 4.00
3289 3706 1.302431 CCGGCTTGTCACATGACCA 60.302 57.895 9.48 0.00 44.15 4.02
3292 3709 1.672030 CTGCCGGCTTGTCACATGA 60.672 57.895 29.70 1.03 0.00 3.07
3331 3748 1.695893 GCTATCGCACACGCACACAT 61.696 55.000 0.00 0.00 39.84 3.21
3371 3788 1.211949 TGCCCTATCCTGTGCCTTAAC 59.788 52.381 0.00 0.00 0.00 2.01
3392 3809 5.386924 TCTCTTACTGTCTATCCCTTAGCC 58.613 45.833 0.00 0.00 0.00 3.93
3396 3813 9.138596 GAATACTTCTCTTACTGTCTATCCCTT 57.861 37.037 0.00 0.00 0.00 3.95
3423 3840 8.429641 GTCTAAAGACCCATCTATATCCAACAA 58.570 37.037 0.00 0.00 39.07 2.83
3432 3849 7.827787 TCTTCCTAGTCTAAAGACCCATCTAT 58.172 38.462 6.50 0.00 45.85 1.98
3517 3943 7.956315 TGCCCTTTATATAGGAGACTGACTTAT 59.044 37.037 10.56 0.00 43.88 1.73
3518 3944 7.302948 TGCCCTTTATATAGGAGACTGACTTA 58.697 38.462 10.56 0.00 43.88 2.24
3523 3949 6.183361 ACAACTGCCCTTTATATAGGAGACTG 60.183 42.308 10.56 6.53 43.88 3.51
3544 3970 4.201910 TGCTTGACTAAAGAGTTGCACAAC 60.202 41.667 5.36 5.36 38.24 3.32
3545 3971 3.944650 TGCTTGACTAAAGAGTTGCACAA 59.055 39.130 0.00 0.00 38.24 3.33
3546 3972 3.540617 TGCTTGACTAAAGAGTTGCACA 58.459 40.909 0.00 0.00 38.24 4.57
3547 3973 4.552166 TTGCTTGACTAAAGAGTTGCAC 57.448 40.909 0.00 0.00 38.24 4.57
3548 3974 4.821260 TCATTGCTTGACTAAAGAGTTGCA 59.179 37.500 0.00 0.00 38.24 4.08
3549 3975 5.362556 TCATTGCTTGACTAAAGAGTTGC 57.637 39.130 0.00 0.00 38.24 4.17
3550 3976 7.587629 TGATTCATTGCTTGACTAAAGAGTTG 58.412 34.615 0.00 0.00 38.24 3.16
3551 3977 7.750229 TGATTCATTGCTTGACTAAAGAGTT 57.250 32.000 0.00 0.00 38.24 3.01
3552 3978 7.201591 CGATGATTCATTGCTTGACTAAAGAGT 60.202 37.037 0.00 0.00 38.24 3.24
3553 3979 7.010830 TCGATGATTCATTGCTTGACTAAAGAG 59.989 37.037 8.79 0.00 38.24 2.85
3554 3980 6.818142 TCGATGATTCATTGCTTGACTAAAGA 59.182 34.615 8.79 0.00 38.24 2.52
3555 3981 7.008440 TCGATGATTCATTGCTTGACTAAAG 57.992 36.000 8.79 0.00 39.07 1.85
3556 3982 6.983474 TCGATGATTCATTGCTTGACTAAA 57.017 33.333 8.79 0.00 32.84 1.85
3557 3983 6.762661 TGATCGATGATTCATTGCTTGACTAA 59.237 34.615 0.54 0.00 32.84 2.24
3637 4063 0.818938 TAGGAGGCGTGCGTTTCATA 59.181 50.000 0.00 0.00 0.00 2.15
3638 4064 0.460284 CTAGGAGGCGTGCGTTTCAT 60.460 55.000 0.00 0.00 0.00 2.57
3639 4065 1.080093 CTAGGAGGCGTGCGTTTCA 60.080 57.895 0.00 0.00 0.00 2.69
3640 4066 1.810030 CCTAGGAGGCGTGCGTTTC 60.810 63.158 1.05 0.00 0.00 2.78
3641 4067 2.227089 CTCCTAGGAGGCGTGCGTTT 62.227 60.000 28.68 0.00 38.51 3.60
3642 4068 2.678934 TCCTAGGAGGCGTGCGTT 60.679 61.111 7.62 0.00 34.61 4.84
3643 4069 3.141488 CTCCTAGGAGGCGTGCGT 61.141 66.667 28.68 0.00 38.51 5.24
3652 4078 5.014966 AGTTGTAGTTACACTCCTCCTAGGA 59.985 44.000 11.98 11.98 43.22 2.94
3653 4079 5.262804 AGTTGTAGTTACACTCCTCCTAGG 58.737 45.833 0.82 0.82 35.64 3.02
3654 4080 6.181908 AGAGTTGTAGTTACACTCCTCCTAG 58.818 44.000 13.42 0.00 36.20 3.02
3655 4081 6.012683 AGAGAGTTGTAGTTACACTCCTCCTA 60.013 42.308 13.42 0.00 36.20 2.94
3656 4082 5.000570 AGAGTTGTAGTTACACTCCTCCT 57.999 43.478 13.42 0.00 36.20 3.69
3657 4083 5.011586 AGAGAGTTGTAGTTACACTCCTCC 58.988 45.833 13.42 7.56 36.20 4.30
3658 4084 5.941647 AGAGAGAGTTGTAGTTACACTCCTC 59.058 44.000 17.72 17.72 36.20 3.71
3659 4085 5.883180 AGAGAGAGTTGTAGTTACACTCCT 58.117 41.667 13.42 11.37 36.20 3.69
3660 4086 6.207025 TCAAGAGAGAGTTGTAGTTACACTCC 59.793 42.308 13.42 8.61 36.20 3.85
3661 4087 7.204496 TCAAGAGAGAGTTGTAGTTACACTC 57.796 40.000 10.95 10.95 35.64 3.51
3662 4088 7.584122 TTCAAGAGAGAGTTGTAGTTACACT 57.416 36.000 0.00 0.00 35.64 3.55
3663 4089 8.704234 CATTTCAAGAGAGAGTTGTAGTTACAC 58.296 37.037 0.00 0.00 35.64 2.90
3664 4090 8.638873 TCATTTCAAGAGAGAGTTGTAGTTACA 58.361 33.333 0.00 0.00 0.00 2.41
3665 4091 9.477484 TTCATTTCAAGAGAGAGTTGTAGTTAC 57.523 33.333 0.00 0.00 0.00 2.50
3667 4093 8.831550 GTTTCATTTCAAGAGAGAGTTGTAGTT 58.168 33.333 0.00 0.00 0.00 2.24
3668 4094 7.169982 CGTTTCATTTCAAGAGAGAGTTGTAGT 59.830 37.037 0.00 0.00 0.00 2.73
3669 4095 7.505646 CGTTTCATTTCAAGAGAGAGTTGTAG 58.494 38.462 0.00 0.00 0.00 2.74
3670 4096 6.073765 GCGTTTCATTTCAAGAGAGAGTTGTA 60.074 38.462 0.00 0.00 0.00 2.41
3671 4097 5.277538 GCGTTTCATTTCAAGAGAGAGTTGT 60.278 40.000 0.00 0.00 0.00 3.32
3672 4098 5.142962 GCGTTTCATTTCAAGAGAGAGTTG 58.857 41.667 0.00 0.00 0.00 3.16
3673 4099 4.816385 TGCGTTTCATTTCAAGAGAGAGTT 59.184 37.500 0.00 0.00 0.00 3.01
3674 4100 4.212214 GTGCGTTTCATTTCAAGAGAGAGT 59.788 41.667 0.00 0.00 0.00 3.24
3675 4101 4.665142 CGTGCGTTTCATTTCAAGAGAGAG 60.665 45.833 0.00 0.00 0.00 3.20
3676 4102 3.184379 CGTGCGTTTCATTTCAAGAGAGA 59.816 43.478 0.00 0.00 0.00 3.10
3677 4103 3.473367 CGTGCGTTTCATTTCAAGAGAG 58.527 45.455 0.00 0.00 0.00 3.20
3678 4104 2.349438 GCGTGCGTTTCATTTCAAGAGA 60.349 45.455 0.00 0.00 0.00 3.10
3679 4105 1.971962 GCGTGCGTTTCATTTCAAGAG 59.028 47.619 0.00 0.00 0.00 2.85
3680 4106 1.601903 AGCGTGCGTTTCATTTCAAGA 59.398 42.857 0.00 0.00 0.00 3.02
3681 4107 1.971962 GAGCGTGCGTTTCATTTCAAG 59.028 47.619 0.00 0.00 0.00 3.02
3682 4108 1.601903 AGAGCGTGCGTTTCATTTCAA 59.398 42.857 0.00 0.00 0.00 2.69
3683 4109 1.194547 GAGAGCGTGCGTTTCATTTCA 59.805 47.619 0.00 0.00 0.00 2.69
3684 4110 1.194547 TGAGAGCGTGCGTTTCATTTC 59.805 47.619 0.00 0.00 0.00 2.17
3685 4111 1.225855 TGAGAGCGTGCGTTTCATTT 58.774 45.000 0.00 0.00 0.00 2.32
3686 4112 1.129251 CATGAGAGCGTGCGTTTCATT 59.871 47.619 0.00 0.00 0.00 2.57
3687 4113 0.723414 CATGAGAGCGTGCGTTTCAT 59.277 50.000 0.00 3.92 0.00 2.57
3688 4114 1.900585 GCATGAGAGCGTGCGTTTCA 61.901 55.000 0.00 0.04 46.06 2.69
3689 4115 1.225854 GCATGAGAGCGTGCGTTTC 60.226 57.895 0.00 0.00 46.06 2.78
3690 4116 2.863153 GCATGAGAGCGTGCGTTT 59.137 55.556 0.00 0.00 46.06 3.60
3698 4124 1.350193 TCGAGAAAACGCATGAGAGC 58.650 50.000 2.50 0.00 0.00 4.09
3699 4125 4.389664 TTTTCGAGAAAACGCATGAGAG 57.610 40.909 2.50 0.00 35.57 3.20
3700 4126 4.804608 TTTTTCGAGAAAACGCATGAGA 57.195 36.364 10.18 0.00 39.70 3.27
3724 4150 8.049721 GGCCCTTTATATAGCAGATATTGAACT 58.950 37.037 0.00 0.00 0.00 3.01
3725 4151 8.049721 AGGCCCTTTATATAGCAGATATTGAAC 58.950 37.037 0.00 0.00 0.00 3.18
3726 4152 8.162848 AGGCCCTTTATATAGCAGATATTGAA 57.837 34.615 0.00 0.00 0.00 2.69
3727 4153 7.755666 AGGCCCTTTATATAGCAGATATTGA 57.244 36.000 0.00 0.00 0.00 2.57
3728 4154 8.814038 AAAGGCCCTTTATATAGCAGATATTG 57.186 34.615 7.03 0.00 31.35 1.90
3729 4155 9.907229 GTAAAGGCCCTTTATATAGCAGATATT 57.093 33.333 18.53 0.00 38.07 1.28
3730 4156 9.285359 AGTAAAGGCCCTTTATATAGCAGATAT 57.715 33.333 18.53 0.00 38.07 1.63
3731 4157 8.680820 AGTAAAGGCCCTTTATATAGCAGATA 57.319 34.615 18.53 0.00 38.07 1.98
3732 4158 7.459444 AGAGTAAAGGCCCTTTATATAGCAGAT 59.541 37.037 18.53 0.00 38.07 2.90
3733 4159 6.787957 AGAGTAAAGGCCCTTTATATAGCAGA 59.212 38.462 18.53 0.00 38.07 4.26
3734 4160 7.010339 AGAGTAAAGGCCCTTTATATAGCAG 57.990 40.000 18.53 0.00 38.07 4.24
3735 4161 7.388638 AAGAGTAAAGGCCCTTTATATAGCA 57.611 36.000 18.53 0.00 38.07 3.49
3736 4162 7.823310 GGTAAGAGTAAAGGCCCTTTATATAGC 59.177 40.741 18.53 13.78 38.07 2.97
3737 4163 8.877195 TGGTAAGAGTAAAGGCCCTTTATATAG 58.123 37.037 18.53 0.00 38.07 1.31
3754 4180 2.025226 TGATCCCTCTCGTGGTAAGAGT 60.025 50.000 0.00 0.00 38.90 3.24
3758 4184 1.412710 GCATGATCCCTCTCGTGGTAA 59.587 52.381 0.00 0.00 33.58 2.85
3802 4229 1.891919 GAAGACCAGCGGCAACACA 60.892 57.895 1.45 0.00 0.00 3.72
3825 4252 1.965414 TATGGTTCAGCCTGGGAAGA 58.035 50.000 0.00 0.00 38.35 2.87
3943 4370 3.305720 ACCTTCTGAGTTCCAGTACACA 58.694 45.455 0.00 0.00 43.38 3.72
3944 4371 5.185249 TGATACCTTCTGAGTTCCAGTACAC 59.815 44.000 0.00 0.00 43.38 2.90
4074 4502 6.071728 CCAAGTCAATGCAAGAATTTCTACCT 60.072 38.462 0.00 0.00 0.00 3.08
4082 4510 4.914983 TCTCTCCAAGTCAATGCAAGAAT 58.085 39.130 0.00 0.00 0.00 2.40
4098 4526 4.384940 AGTTGCAAAGTTTCTCTCTCTCC 58.615 43.478 0.00 0.00 0.00 3.71
4178 4608 9.722056 CATAATGCCTATTAAACTTGTCTTGAC 57.278 33.333 0.00 0.00 32.80 3.18
4220 4650 7.121759 AGGTGTGAAGGAGAACATTATGAAATG 59.878 37.037 0.00 0.00 46.66 2.32
4287 4753 9.797642 TGAACGGAGGTAGTAATTCATATAGTA 57.202 33.333 0.00 0.00 0.00 1.82
4288 4754 8.574737 GTGAACGGAGGTAGTAATTCATATAGT 58.425 37.037 0.00 0.00 0.00 2.12
4289 4755 8.794553 AGTGAACGGAGGTAGTAATTCATATAG 58.205 37.037 0.00 0.00 0.00 1.31
4290 4756 8.701908 AGTGAACGGAGGTAGTAATTCATATA 57.298 34.615 0.00 0.00 0.00 0.86
4291 4757 7.598759 AGTGAACGGAGGTAGTAATTCATAT 57.401 36.000 0.00 0.00 0.00 1.78
4292 4758 7.414222 AAGTGAACGGAGGTAGTAATTCATA 57.586 36.000 0.00 0.00 0.00 2.15
4293 4759 5.934402 AGTGAACGGAGGTAGTAATTCAT 57.066 39.130 0.00 0.00 0.00 2.57
4294 4760 5.733620 AAGTGAACGGAGGTAGTAATTCA 57.266 39.130 0.00 0.00 0.00 2.57
4295 4761 8.713737 ATAAAAGTGAACGGAGGTAGTAATTC 57.286 34.615 0.00 0.00 0.00 2.17
4297 4763 9.813446 CTTATAAAAGTGAACGGAGGTAGTAAT 57.187 33.333 0.00 0.00 0.00 1.89
4298 4764 8.253113 CCTTATAAAAGTGAACGGAGGTAGTAA 58.747 37.037 0.00 0.00 0.00 2.24
4299 4765 7.631377 GCCTTATAAAAGTGAACGGAGGTAGTA 60.631 40.741 0.00 0.00 0.00 1.82
4300 4766 6.637657 CCTTATAAAAGTGAACGGAGGTAGT 58.362 40.000 0.00 0.00 0.00 2.73
4301 4767 5.522824 GCCTTATAAAAGTGAACGGAGGTAG 59.477 44.000 0.00 0.00 0.00 3.18
4302 4768 5.422145 GCCTTATAAAAGTGAACGGAGGTA 58.578 41.667 0.00 0.00 0.00 3.08
4303 4769 4.259356 GCCTTATAAAAGTGAACGGAGGT 58.741 43.478 0.00 0.00 0.00 3.85
4304 4770 3.308866 CGCCTTATAAAAGTGAACGGAGG 59.691 47.826 0.00 0.00 0.00 4.30
4305 4771 3.930848 ACGCCTTATAAAAGTGAACGGAG 59.069 43.478 3.42 0.00 0.00 4.63
4306 4772 3.929094 ACGCCTTATAAAAGTGAACGGA 58.071 40.909 3.42 0.00 0.00 4.69
4307 4773 4.083696 ACAACGCCTTATAAAAGTGAACGG 60.084 41.667 3.42 0.00 0.00 4.44
4308 4774 5.025986 ACAACGCCTTATAAAAGTGAACG 57.974 39.130 3.42 0.00 0.00 3.95
4309 4775 6.019762 GCTACAACGCCTTATAAAAGTGAAC 58.980 40.000 3.42 0.00 0.00 3.18
4310 4776 5.701750 TGCTACAACGCCTTATAAAAGTGAA 59.298 36.000 3.42 0.00 0.00 3.18
4311 4777 5.239351 TGCTACAACGCCTTATAAAAGTGA 58.761 37.500 3.42 0.00 0.00 3.41
4312 4778 5.539582 TGCTACAACGCCTTATAAAAGTG 57.460 39.130 0.00 0.00 0.00 3.16
4313 4779 6.753107 AATGCTACAACGCCTTATAAAAGT 57.247 33.333 0.00 0.00 0.00 2.66
4314 4780 7.247728 TGAAATGCTACAACGCCTTATAAAAG 58.752 34.615 0.00 0.00 0.00 2.27
4315 4781 7.119992 TCTGAAATGCTACAACGCCTTATAAAA 59.880 33.333 0.00 0.00 0.00 1.52
4316 4782 6.596106 TCTGAAATGCTACAACGCCTTATAAA 59.404 34.615 0.00 0.00 0.00 1.40
4317 4783 6.036735 GTCTGAAATGCTACAACGCCTTATAA 59.963 38.462 0.00 0.00 0.00 0.98
4318 4784 5.522460 GTCTGAAATGCTACAACGCCTTATA 59.478 40.000 0.00 0.00 0.00 0.98
4319 4785 4.332819 GTCTGAAATGCTACAACGCCTTAT 59.667 41.667 0.00 0.00 0.00 1.73
4320 4786 3.682858 GTCTGAAATGCTACAACGCCTTA 59.317 43.478 0.00 0.00 0.00 2.69
4321 4787 2.484264 GTCTGAAATGCTACAACGCCTT 59.516 45.455 0.00 0.00 0.00 4.35
4322 4788 2.076863 GTCTGAAATGCTACAACGCCT 58.923 47.619 0.00 0.00 0.00 5.52
4323 4789 1.804151 TGTCTGAAATGCTACAACGCC 59.196 47.619 0.00 0.00 0.00 5.68
4324 4790 2.223144 TGTGTCTGAAATGCTACAACGC 59.777 45.455 0.00 0.00 0.00 4.84
4325 4791 3.494626 ACTGTGTCTGAAATGCTACAACG 59.505 43.478 0.00 0.00 0.00 4.10
4326 4792 4.776743 CACTGTGTCTGAAATGCTACAAC 58.223 43.478 0.00 0.00 0.00 3.32
4327 4793 3.250762 GCACTGTGTCTGAAATGCTACAA 59.749 43.478 9.86 0.00 0.00 2.41
4328 4794 2.807967 GCACTGTGTCTGAAATGCTACA 59.192 45.455 9.86 0.00 0.00 2.74
4329 4795 2.807967 TGCACTGTGTCTGAAATGCTAC 59.192 45.455 9.86 0.00 34.18 3.58
4330 4796 3.124578 TGCACTGTGTCTGAAATGCTA 57.875 42.857 9.86 0.00 34.18 3.49
4331 4797 1.971481 TGCACTGTGTCTGAAATGCT 58.029 45.000 9.86 0.00 34.18 3.79
4332 4798 2.780065 TTGCACTGTGTCTGAAATGC 57.220 45.000 9.86 0.00 0.00 3.56
4333 4799 4.422840 TGTTTTGCACTGTGTCTGAAATG 58.577 39.130 9.86 0.00 0.00 2.32
4334 4800 4.158394 ACTGTTTTGCACTGTGTCTGAAAT 59.842 37.500 9.86 0.00 36.27 2.17
4335 4801 3.505680 ACTGTTTTGCACTGTGTCTGAAA 59.494 39.130 9.86 3.34 36.27 2.69
4336 4802 3.081061 ACTGTTTTGCACTGTGTCTGAA 58.919 40.909 9.86 0.00 36.27 3.02
4337 4803 2.710377 ACTGTTTTGCACTGTGTCTGA 58.290 42.857 9.86 0.00 36.27 3.27
4338 4804 3.127548 AGAACTGTTTTGCACTGTGTCTG 59.872 43.478 9.86 3.00 37.61 3.51
4339 4805 3.347216 AGAACTGTTTTGCACTGTGTCT 58.653 40.909 9.86 0.00 37.61 3.41
4340 4806 3.764885 AGAACTGTTTTGCACTGTGTC 57.235 42.857 9.86 2.63 37.61 3.67
4341 4807 5.835113 AATAGAACTGTTTTGCACTGTGT 57.165 34.783 9.86 0.00 37.61 3.72
4342 4808 6.264832 TGAAATAGAACTGTTTTGCACTGTG 58.735 36.000 2.76 2.76 37.61 3.66
4343 4809 6.095440 ACTGAAATAGAACTGTTTTGCACTGT 59.905 34.615 0.00 0.00 39.15 3.55
4344 4810 6.498304 ACTGAAATAGAACTGTTTTGCACTG 58.502 36.000 0.00 0.00 0.00 3.66
4345 4811 6.699575 ACTGAAATAGAACTGTTTTGCACT 57.300 33.333 0.00 0.00 0.00 4.40
4346 4812 6.751888 ACAACTGAAATAGAACTGTTTTGCAC 59.248 34.615 0.00 0.00 0.00 4.57
4347 4813 6.862209 ACAACTGAAATAGAACTGTTTTGCA 58.138 32.000 0.00 0.00 0.00 4.08
4348 4814 7.166473 CAGACAACTGAAATAGAACTGTTTTGC 59.834 37.037 0.00 0.00 46.03 3.68
4349 4815 8.552469 CAGACAACTGAAATAGAACTGTTTTG 57.448 34.615 0.00 0.00 46.03 2.44
4364 4830 7.924412 ACTTTATAAGTCGTTTCAGACAACTGA 59.076 33.333 0.00 0.00 43.68 3.41
4365 4831 8.004344 CACTTTATAAGTCGTTTCAGACAACTG 58.996 37.037 0.00 0.00 43.24 3.16
4366 4832 7.924412 TCACTTTATAAGTCGTTTCAGACAACT 59.076 33.333 0.00 0.00 43.24 3.16
4367 4833 8.068893 TCACTTTATAAGTCGTTTCAGACAAC 57.931 34.615 0.00 0.00 43.24 3.32
4368 4834 8.545420 GTTCACTTTATAAGTCGTTTCAGACAA 58.455 33.333 0.00 0.00 43.24 3.18
4369 4835 7.096353 CGTTCACTTTATAAGTCGTTTCAGACA 60.096 37.037 0.00 0.00 43.24 3.41
4370 4836 7.218560 CGTTCACTTTATAAGTCGTTTCAGAC 58.781 38.462 0.00 0.00 40.46 3.51
4371 4837 6.364165 CCGTTCACTTTATAAGTCGTTTCAGA 59.636 38.462 0.00 0.00 40.46 3.27
4372 4838 6.364165 TCCGTTCACTTTATAAGTCGTTTCAG 59.636 38.462 0.00 0.00 40.46 3.02
4373 4839 6.215121 TCCGTTCACTTTATAAGTCGTTTCA 58.785 36.000 0.00 0.00 40.46 2.69
4374 4840 6.183360 CCTCCGTTCACTTTATAAGTCGTTTC 60.183 42.308 0.00 0.00 40.46 2.78
4375 4841 5.636543 CCTCCGTTCACTTTATAAGTCGTTT 59.363 40.000 0.00 0.00 40.46 3.60
4376 4842 5.166398 CCTCCGTTCACTTTATAAGTCGTT 58.834 41.667 0.00 0.00 40.46 3.85
4377 4843 4.381292 CCCTCCGTTCACTTTATAAGTCGT 60.381 45.833 0.00 0.00 40.46 4.34
4378 4844 4.110482 CCCTCCGTTCACTTTATAAGTCG 58.890 47.826 0.00 0.00 40.46 4.18
4379 4845 5.105432 ACTCCCTCCGTTCACTTTATAAGTC 60.105 44.000 0.00 0.00 40.46 3.01
4380 4846 4.776308 ACTCCCTCCGTTCACTTTATAAGT 59.224 41.667 0.00 0.00 44.06 2.24
4381 4847 5.340439 ACTCCCTCCGTTCACTTTATAAG 57.660 43.478 0.00 0.00 0.00 1.73
4382 4848 6.837568 AGATACTCCCTCCGTTCACTTTATAA 59.162 38.462 0.00 0.00 0.00 0.98
4383 4849 6.371278 AGATACTCCCTCCGTTCACTTTATA 58.629 40.000 0.00 0.00 0.00 0.98
4384 4850 5.209659 AGATACTCCCTCCGTTCACTTTAT 58.790 41.667 0.00 0.00 0.00 1.40
4385 4851 4.607239 AGATACTCCCTCCGTTCACTTTA 58.393 43.478 0.00 0.00 0.00 1.85
4386 4852 3.442076 AGATACTCCCTCCGTTCACTTT 58.558 45.455 0.00 0.00 0.00 2.66
4387 4853 3.103080 AGATACTCCCTCCGTTCACTT 57.897 47.619 0.00 0.00 0.00 3.16
4388 4854 2.830651 AGATACTCCCTCCGTTCACT 57.169 50.000 0.00 0.00 0.00 3.41
4389 4855 3.889520 AAAGATACTCCCTCCGTTCAC 57.110 47.619 0.00 0.00 0.00 3.18
4390 4856 6.555463 AATAAAAGATACTCCCTCCGTTCA 57.445 37.500 0.00 0.00 0.00 3.18
4391 4857 9.557061 AAATAATAAAAGATACTCCCTCCGTTC 57.443 33.333 0.00 0.00 0.00 3.95
4392 4858 9.916360 AAAATAATAAAAGATACTCCCTCCGTT 57.084 29.630 0.00 0.00 0.00 4.44
4393 4859 9.916360 AAAAATAATAAAAGATACTCCCTCCGT 57.084 29.630 0.00 0.00 0.00 4.69
4411 4877 8.997621 TCTCGAAGTGCACTAGTAAAAATAAT 57.002 30.769 22.01 0.00 0.00 1.28
4412 4878 8.821147 TTCTCGAAGTGCACTAGTAAAAATAA 57.179 30.769 22.01 3.49 0.00 1.40
4413 4879 8.997621 ATTCTCGAAGTGCACTAGTAAAAATA 57.002 30.769 22.01 0.91 0.00 1.40
4414 4880 7.819900 AGATTCTCGAAGTGCACTAGTAAAAAT 59.180 33.333 22.01 15.09 0.00 1.82
4415 4881 7.152645 AGATTCTCGAAGTGCACTAGTAAAAA 58.847 34.615 22.01 10.98 0.00 1.94
4416 4882 6.688578 AGATTCTCGAAGTGCACTAGTAAAA 58.311 36.000 22.01 12.57 0.00 1.52
4417 4883 6.268825 AGATTCTCGAAGTGCACTAGTAAA 57.731 37.500 22.01 14.90 0.00 2.01
4418 4884 5.899120 AGATTCTCGAAGTGCACTAGTAA 57.101 39.130 22.01 15.22 0.00 2.24
4419 4885 5.899120 AAGATTCTCGAAGTGCACTAGTA 57.101 39.130 22.01 8.37 0.00 1.82
4420 4886 4.792521 AAGATTCTCGAAGTGCACTAGT 57.207 40.909 22.01 4.98 0.00 2.57
4421 4887 5.641709 TGTAAGATTCTCGAAGTGCACTAG 58.358 41.667 22.01 17.34 0.00 2.57
4422 4888 5.638596 TGTAAGATTCTCGAAGTGCACTA 57.361 39.130 22.01 2.96 0.00 2.74
4423 4889 4.521130 TGTAAGATTCTCGAAGTGCACT 57.479 40.909 15.25 15.25 0.00 4.40
4424 4890 7.648112 TGTATATGTAAGATTCTCGAAGTGCAC 59.352 37.037 9.40 9.40 0.00 4.57
4425 4891 7.712797 TGTATATGTAAGATTCTCGAAGTGCA 58.287 34.615 0.00 0.00 0.00 4.57
4426 4892 8.749841 ATGTATATGTAAGATTCTCGAAGTGC 57.250 34.615 0.00 0.00 0.00 4.40
4427 4893 9.347934 GGATGTATATGTAAGATTCTCGAAGTG 57.652 37.037 0.00 0.00 0.00 3.16
4428 4894 9.078990 TGGATGTATATGTAAGATTCTCGAAGT 57.921 33.333 0.00 0.00 0.00 3.01
4430 4896 9.860898 CATGGATGTATATGTAAGATTCTCGAA 57.139 33.333 0.00 0.00 0.00 3.71
4431 4897 7.976175 GCATGGATGTATATGTAAGATTCTCGA 59.024 37.037 0.00 0.00 0.00 4.04
4432 4898 7.978414 AGCATGGATGTATATGTAAGATTCTCG 59.022 37.037 0.00 0.00 0.00 4.04
4501 4967 6.701841 TCAGATGAAGTATCAAGATTAACCGC 59.298 38.462 0.00 0.00 39.49 5.68
4516 4982 7.732140 TGAGATTATAGGGACATCAGATGAAGT 59.268 37.037 17.81 0.00 0.00 3.01
4521 4987 7.493499 CCTTGAGATTATAGGGACATCAGAT 57.507 40.000 0.00 0.00 0.00 2.90
4693 5159 3.452264 AGAGCTCATGCCAATACAGTACA 59.548 43.478 17.77 0.00 40.80 2.90
4699 5165 4.384056 ACACATAGAGCTCATGCCAATAC 58.616 43.478 17.77 0.00 40.80 1.89
4704 5170 4.191544 TGTTAACACATAGAGCTCATGCC 58.808 43.478 17.77 0.00 40.80 4.40
4705 5171 5.563842 GTTGTTAACACATAGAGCTCATGC 58.436 41.667 17.77 4.78 34.02 4.06
4711 5177 4.689345 AGAACCGTTGTTAACACATAGAGC 59.311 41.667 8.07 0.00 33.97 4.09
4715 5181 6.762187 TCAGAAAGAACCGTTGTTAACACATA 59.238 34.615 8.07 0.00 33.97 2.29
4717 5183 4.936411 TCAGAAAGAACCGTTGTTAACACA 59.064 37.500 8.07 0.00 33.97 3.72
4718 5184 5.163834 TGTCAGAAAGAACCGTTGTTAACAC 60.164 40.000 8.07 3.09 33.97 3.32
4729 5195 8.092687 TGGTATAACTACTTGTCAGAAAGAACC 58.907 37.037 0.00 0.00 0.00 3.62
4930 5400 1.202114 GCAACGGCCTTTTCATGATCA 59.798 47.619 0.00 0.00 0.00 2.92
4975 5445 1.594331 GAAGGTGTTCAAAGACGGCT 58.406 50.000 0.00 0.00 32.36 5.52
4978 5448 3.183775 CGTAAGGAAGGTGTTCAAAGACG 59.816 47.826 0.00 0.00 33.93 4.18
5026 5496 1.005215 CCCTCCAGCTTCAGGTTCATT 59.995 52.381 6.91 0.00 0.00 2.57
5063 5533 2.571212 TCGCAGACTTGTTGAACCAAT 58.429 42.857 0.00 0.00 0.00 3.16
5361 5840 7.559533 AGTTTGCCCATACATACATTGATACAA 59.440 33.333 0.00 0.00 0.00 2.41
5412 5891 1.973812 GCACCCCAGAAGAGGTTGC 60.974 63.158 0.00 0.00 32.72 4.17
5478 5957 2.659897 GTGCTATGAGCGGCCTCG 60.660 66.667 0.00 0.00 46.26 4.63
5498 10481 3.371898 GCAGTTTATTCAATTGGCCAAGC 59.628 43.478 24.94 12.94 0.00 4.01
5546 10529 0.606401 CATGGACCTGTGGCGTCTTT 60.606 55.000 0.00 0.00 0.00 2.52
5711 11111 1.801178 GCTGCTGGACTTACAGTCAAC 59.199 52.381 6.25 0.00 46.79 3.18
5743 11153 5.419542 TCGAATAAAAGGATCTGTCACCTG 58.580 41.667 0.00 0.00 36.56 4.00
5745 11155 9.706691 TTATATCGAATAAAAGGATCTGTCACC 57.293 33.333 0.00 0.00 0.00 4.02
5752 11162 8.336080 GCGGGATTTATATCGAATAAAAGGATC 58.664 37.037 13.19 8.55 0.00 3.36
5783 11196 4.269123 TGGCGTAGTTAATTTATCTGTGCG 59.731 41.667 0.00 0.00 0.00 5.34
5866 11283 1.493950 CGATCTCATTCCTGCACGGC 61.494 60.000 0.00 0.00 0.00 5.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.