Multiple sequence alignment - TraesCS3D01G343100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G343100 chr3D 100.000 1657 0 0 1385 3041 455716160 455717816 0.000000e+00 3061.0
1 TraesCS3D01G343100 chr3D 100.000 1096 0 0 1 1096 455714776 455715871 0.000000e+00 2025.0
2 TraesCS3D01G343100 chr3D 100.000 208 0 0 1 208 455705147 455705354 4.760000e-103 385.0
3 TraesCS3D01G343100 chr3A 91.249 1714 68 41 1385 3041 597919662 597921350 0.000000e+00 2259.0
4 TraesCS3D01G343100 chr3A 85.674 712 56 29 404 1096 597918974 597919658 0.000000e+00 708.0
5 TraesCS3D01G343100 chr3B 90.302 1722 61 48 1385 3041 598989516 598991196 0.000000e+00 2158.0
6 TraesCS3D01G343100 chr3B 86.479 355 18 9 743 1096 598989187 598989512 2.230000e-96 363.0
7 TraesCS3D01G343100 chr3B 79.638 221 43 2 408 628 598987399 598987617 1.130000e-34 158.0
8 TraesCS3D01G343100 chr1A 90.499 421 20 9 1 401 513429408 513429828 3.450000e-149 538.0
9 TraesCS3D01G343100 chr2D 87.440 414 38 3 2 401 543109317 543108904 5.940000e-127 464.0
10 TraesCS3D01G343100 chr2D 100.000 29 0 0 1988 2016 375257796 375257824 2.000000e-03 54.7
11 TraesCS3D01G343100 chr2B 75.362 138 26 6 1883 2016 445497937 445498070 3.270000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G343100 chr3D 455714776 455717816 3040 False 2543.0 3061 100.0000 1 3041 2 chr3D.!!$F2 3040
1 TraesCS3D01G343100 chr3A 597918974 597921350 2376 False 1483.5 2259 88.4615 404 3041 2 chr3A.!!$F1 2637
2 TraesCS3D01G343100 chr3B 598987399 598991196 3797 False 893.0 2158 85.4730 408 3041 3 chr3B.!!$F1 2633

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
506 507 0.034337 TCACCCTAACCGCAACTCAC 59.966 55.0 0.0 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2467 4005 0.177836 AAAACCCAGTGCAAAGTGCC 59.822 50.0 0.0 0.0 44.23 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.547859 GCATGAACGAGCAGGGAT 57.452 55.556 0.00 0.00 0.00 3.85
18 19 2.020131 GCATGAACGAGCAGGGATG 58.980 57.895 0.00 0.00 0.00 3.51
19 20 1.442526 GCATGAACGAGCAGGGATGG 61.443 60.000 0.00 0.00 0.00 3.51
20 21 0.816825 CATGAACGAGCAGGGATGGG 60.817 60.000 0.00 0.00 0.00 4.00
21 22 1.987807 ATGAACGAGCAGGGATGGGG 61.988 60.000 0.00 0.00 0.00 4.96
22 23 3.406595 GAACGAGCAGGGATGGGGG 62.407 68.421 0.00 0.00 0.00 5.40
27 28 4.928140 GCAGGGATGGGGGCCATG 62.928 72.222 4.39 0.00 45.26 3.66
28 29 4.229073 CAGGGATGGGGGCCATGG 62.229 72.222 7.63 7.63 45.26 3.66
50 51 4.151582 GCGGCCGCAGTAACCCTA 62.152 66.667 43.55 0.00 41.49 3.53
51 52 2.106332 CGGCCGCAGTAACCCTAG 59.894 66.667 14.67 0.00 0.00 3.02
52 53 2.203029 GGCCGCAGTAACCCTAGC 60.203 66.667 0.00 0.00 0.00 3.42
55 56 2.585247 CGCAGTAACCCTAGCGGC 60.585 66.667 0.00 0.00 45.83 6.53
56 57 2.585247 GCAGTAACCCTAGCGGCG 60.585 66.667 0.51 0.51 33.26 6.46
57 58 3.072486 GCAGTAACCCTAGCGGCGA 62.072 63.158 12.98 0.00 33.26 5.54
58 59 1.514087 CAGTAACCCTAGCGGCGAA 59.486 57.895 12.98 0.00 33.26 4.70
59 60 0.527817 CAGTAACCCTAGCGGCGAAG 60.528 60.000 12.98 6.93 33.26 3.79
60 61 1.227176 GTAACCCTAGCGGCGAAGG 60.227 63.158 12.98 16.59 33.26 3.46
78 79 3.827898 CGGACCTGAGCGACCCTC 61.828 72.222 0.00 0.00 41.15 4.30
79 80 3.462678 GGACCTGAGCGACCCTCC 61.463 72.222 0.00 0.00 39.98 4.30
80 81 3.462678 GACCTGAGCGACCCTCCC 61.463 72.222 0.00 0.00 39.98 4.30
81 82 4.316823 ACCTGAGCGACCCTCCCA 62.317 66.667 0.00 0.00 39.98 4.37
82 83 3.003173 CCTGAGCGACCCTCCCAA 61.003 66.667 0.00 0.00 39.98 4.12
83 84 2.266055 CTGAGCGACCCTCCCAAC 59.734 66.667 0.00 0.00 39.98 3.77
84 85 3.316573 CTGAGCGACCCTCCCAACC 62.317 68.421 0.00 0.00 39.98 3.77
85 86 4.097361 GAGCGACCCTCCCAACCC 62.097 72.222 0.00 0.00 34.35 4.11
86 87 4.974438 AGCGACCCTCCCAACCCA 62.974 66.667 0.00 0.00 0.00 4.51
87 88 3.728373 GCGACCCTCCCAACCCAT 61.728 66.667 0.00 0.00 0.00 4.00
88 89 2.272146 CGACCCTCCCAACCCATG 59.728 66.667 0.00 0.00 0.00 3.66
89 90 2.043953 GACCCTCCCAACCCATGC 60.044 66.667 0.00 0.00 0.00 4.06
90 91 3.662117 GACCCTCCCAACCCATGCC 62.662 68.421 0.00 0.00 0.00 4.40
91 92 4.463788 CCCTCCCAACCCATGCCC 62.464 72.222 0.00 0.00 0.00 5.36
92 93 4.463788 CCTCCCAACCCATGCCCC 62.464 72.222 0.00 0.00 0.00 5.80
93 94 4.820744 CTCCCAACCCATGCCCCG 62.821 72.222 0.00 0.00 0.00 5.73
115 116 3.607661 GGCGACGGAGGGAGGATC 61.608 72.222 0.00 0.00 0.00 3.36
147 148 4.452733 CCGGGCACGAGGTCCTTC 62.453 72.222 11.66 0.00 44.60 3.46
148 149 3.382832 CGGGCACGAGGTCCTTCT 61.383 66.667 0.00 0.00 44.60 2.85
149 150 2.579738 GGGCACGAGGTCCTTCTC 59.420 66.667 0.00 0.00 38.65 2.87
155 156 2.896443 GAGGTCCTTCTCGGCTGG 59.104 66.667 0.00 0.00 0.00 4.85
156 157 3.378399 GAGGTCCTTCTCGGCTGGC 62.378 68.421 0.00 0.00 0.00 4.85
157 158 3.706373 GGTCCTTCTCGGCTGGCA 61.706 66.667 1.08 0.00 0.00 4.92
158 159 2.125350 GTCCTTCTCGGCTGGCAG 60.125 66.667 10.94 10.94 0.00 4.85
159 160 4.087892 TCCTTCTCGGCTGGCAGC 62.088 66.667 30.93 30.93 41.46 5.25
160 161 4.093291 CCTTCTCGGCTGGCAGCT 62.093 66.667 35.73 0.00 41.99 4.24
166 167 4.393155 CGGCTGGCAGCTGGTACA 62.393 66.667 35.37 0.00 43.75 2.90
177 178 3.587095 TGGTACAGCTCGAGGTCG 58.413 61.111 15.54 12.76 41.45 4.79
178 179 2.102553 GGTACAGCTCGAGGTCGC 59.897 66.667 15.54 7.56 39.60 5.19
179 180 2.277373 GTACAGCTCGAGGTCGCG 60.277 66.667 15.54 6.52 39.60 5.87
180 181 2.745100 TACAGCTCGAGGTCGCGT 60.745 61.111 15.54 12.51 39.60 6.01
181 182 3.035576 TACAGCTCGAGGTCGCGTG 62.036 63.158 15.54 5.72 39.60 5.34
185 186 4.180946 CTCGAGGTCGCGTGGGAG 62.181 72.222 5.77 3.56 39.60 4.30
186 187 4.710167 TCGAGGTCGCGTGGGAGA 62.710 66.667 5.77 0.00 39.60 3.71
187 188 4.477975 CGAGGTCGCGTGGGAGAC 62.478 72.222 5.77 0.00 41.63 3.36
188 189 3.371063 GAGGTCGCGTGGGAGACA 61.371 66.667 5.77 0.00 43.82 3.41
189 190 2.680352 AGGTCGCGTGGGAGACAT 60.680 61.111 5.77 0.00 43.82 3.06
190 191 2.509336 GGTCGCGTGGGAGACATG 60.509 66.667 5.77 0.00 43.82 3.21
191 192 2.571757 GTCGCGTGGGAGACATGA 59.428 61.111 5.77 0.00 41.91 3.07
192 193 1.080093 GTCGCGTGGGAGACATGAA 60.080 57.895 5.77 0.00 41.91 2.57
193 194 0.669318 GTCGCGTGGGAGACATGAAA 60.669 55.000 5.77 0.00 41.91 2.69
194 195 0.389817 TCGCGTGGGAGACATGAAAG 60.390 55.000 5.77 0.00 38.41 2.62
195 196 0.389817 CGCGTGGGAGACATGAAAGA 60.390 55.000 0.00 0.00 38.41 2.52
196 197 1.363744 GCGTGGGAGACATGAAAGAG 58.636 55.000 0.00 0.00 38.41 2.85
197 198 2.009042 GCGTGGGAGACATGAAAGAGG 61.009 57.143 0.00 0.00 38.41 3.69
198 199 1.276421 CGTGGGAGACATGAAAGAGGT 59.724 52.381 0.00 0.00 38.41 3.85
199 200 2.289694 CGTGGGAGACATGAAAGAGGTT 60.290 50.000 0.00 0.00 38.41 3.50
200 201 3.077359 GTGGGAGACATGAAAGAGGTTG 58.923 50.000 0.00 0.00 0.00 3.77
201 202 2.087646 GGGAGACATGAAAGAGGTTGC 58.912 52.381 0.00 0.00 0.00 4.17
202 203 1.734465 GGAGACATGAAAGAGGTTGCG 59.266 52.381 0.00 0.00 0.00 4.85
203 204 2.417719 GAGACATGAAAGAGGTTGCGT 58.582 47.619 0.00 0.00 0.00 5.24
204 205 2.146342 AGACATGAAAGAGGTTGCGTG 58.854 47.619 0.00 0.00 0.00 5.34
205 206 0.593128 ACATGAAAGAGGTTGCGTGC 59.407 50.000 0.00 0.00 0.00 5.34
206 207 0.592637 CATGAAAGAGGTTGCGTGCA 59.407 50.000 0.00 0.00 0.00 4.57
207 208 1.200716 CATGAAAGAGGTTGCGTGCAT 59.799 47.619 0.00 0.00 0.00 3.96
208 209 0.592637 TGAAAGAGGTTGCGTGCATG 59.407 50.000 0.09 0.09 0.00 4.06
209 210 0.109597 GAAAGAGGTTGCGTGCATGG 60.110 55.000 8.27 0.00 0.00 3.66
210 211 0.537143 AAAGAGGTTGCGTGCATGGA 60.537 50.000 8.27 0.81 0.00 3.41
211 212 0.957395 AAGAGGTTGCGTGCATGGAG 60.957 55.000 8.27 0.00 0.00 3.86
212 213 2.360350 AGGTTGCGTGCATGGAGG 60.360 61.111 8.27 2.14 0.00 4.30
213 214 2.359850 GGTTGCGTGCATGGAGGA 60.360 61.111 11.38 0.00 0.00 3.71
214 215 2.401766 GGTTGCGTGCATGGAGGAG 61.402 63.158 11.38 0.00 0.00 3.69
215 216 1.375908 GTTGCGTGCATGGAGGAGA 60.376 57.895 11.38 0.00 0.00 3.71
216 217 0.955428 GTTGCGTGCATGGAGGAGAA 60.955 55.000 11.38 0.00 0.00 2.87
217 218 0.250684 TTGCGTGCATGGAGGAGAAA 60.251 50.000 11.38 0.00 0.00 2.52
218 219 0.955428 TGCGTGCATGGAGGAGAAAC 60.955 55.000 11.38 0.00 0.00 2.78
219 220 0.955428 GCGTGCATGGAGGAGAAACA 60.955 55.000 11.38 0.00 0.00 2.83
220 221 1.081892 CGTGCATGGAGGAGAAACAG 58.918 55.000 0.00 0.00 0.00 3.16
221 222 1.338105 CGTGCATGGAGGAGAAACAGA 60.338 52.381 0.00 0.00 0.00 3.41
222 223 2.354259 GTGCATGGAGGAGAAACAGAG 58.646 52.381 0.00 0.00 0.00 3.35
223 224 2.027745 GTGCATGGAGGAGAAACAGAGA 60.028 50.000 0.00 0.00 0.00 3.10
224 225 2.639347 TGCATGGAGGAGAAACAGAGAA 59.361 45.455 0.00 0.00 0.00 2.87
225 226 3.269178 GCATGGAGGAGAAACAGAGAAG 58.731 50.000 0.00 0.00 0.00 2.85
226 227 3.871485 CATGGAGGAGAAACAGAGAAGG 58.129 50.000 0.00 0.00 0.00 3.46
227 228 2.260822 TGGAGGAGAAACAGAGAAGGG 58.739 52.381 0.00 0.00 0.00 3.95
228 229 2.158158 TGGAGGAGAAACAGAGAAGGGA 60.158 50.000 0.00 0.00 0.00 4.20
229 230 3.111484 GGAGGAGAAACAGAGAAGGGAT 58.889 50.000 0.00 0.00 0.00 3.85
230 231 3.118445 GGAGGAGAAACAGAGAAGGGATG 60.118 52.174 0.00 0.00 0.00 3.51
231 232 2.843113 AGGAGAAACAGAGAAGGGATGG 59.157 50.000 0.00 0.00 0.00 3.51
232 233 2.637947 GAGAAACAGAGAAGGGATGGC 58.362 52.381 0.00 0.00 0.00 4.40
233 234 2.238395 GAGAAACAGAGAAGGGATGGCT 59.762 50.000 0.00 0.00 0.00 4.75
234 235 2.646798 AGAAACAGAGAAGGGATGGCTT 59.353 45.455 0.00 0.00 0.00 4.35
235 236 2.797177 AACAGAGAAGGGATGGCTTC 57.203 50.000 0.00 0.00 0.00 3.86
236 237 0.539051 ACAGAGAAGGGATGGCTTCG 59.461 55.000 0.00 0.00 34.99 3.79
237 238 0.539051 CAGAGAAGGGATGGCTTCGT 59.461 55.000 0.00 0.00 34.99 3.85
238 239 1.757118 CAGAGAAGGGATGGCTTCGTA 59.243 52.381 0.00 0.00 34.99 3.43
239 240 2.035632 AGAGAAGGGATGGCTTCGTAG 58.964 52.381 0.00 0.00 34.99 3.51
240 241 1.069358 GAGAAGGGATGGCTTCGTAGG 59.931 57.143 0.00 0.00 34.99 3.18
241 242 0.106894 GAAGGGATGGCTTCGTAGGG 59.893 60.000 0.00 0.00 0.00 3.53
242 243 0.326238 AAGGGATGGCTTCGTAGGGA 60.326 55.000 0.00 0.00 0.00 4.20
243 244 0.326238 AGGGATGGCTTCGTAGGGAA 60.326 55.000 0.00 0.00 0.00 3.97
255 256 6.242508 CTTCGTAGGGAAGGAAAGAAAAAG 57.757 41.667 0.00 0.00 46.89 2.27
256 257 4.648651 TCGTAGGGAAGGAAAGAAAAAGG 58.351 43.478 0.00 0.00 0.00 3.11
257 258 4.103627 TCGTAGGGAAGGAAAGAAAAAGGT 59.896 41.667 0.00 0.00 0.00 3.50
258 259 4.825634 CGTAGGGAAGGAAAGAAAAAGGTT 59.174 41.667 0.00 0.00 0.00 3.50
259 260 5.301045 CGTAGGGAAGGAAAGAAAAAGGTTT 59.699 40.000 0.00 0.00 0.00 3.27
260 261 6.183360 CGTAGGGAAGGAAAGAAAAAGGTTTT 60.183 38.462 0.00 0.00 0.00 2.43
261 262 7.013559 CGTAGGGAAGGAAAGAAAAAGGTTTTA 59.986 37.037 0.00 0.00 0.00 1.52
262 263 7.120923 AGGGAAGGAAAGAAAAAGGTTTTAC 57.879 36.000 0.00 0.00 0.00 2.01
263 264 6.099269 AGGGAAGGAAAGAAAAAGGTTTTACC 59.901 38.462 0.00 0.00 38.99 2.85
264 265 6.126997 GGGAAGGAAAGAAAAAGGTTTTACCA 60.127 38.462 0.00 0.00 41.95 3.25
265 266 6.984474 GGAAGGAAAGAAAAAGGTTTTACCAG 59.016 38.462 0.00 0.00 41.95 4.00
266 267 7.147794 GGAAGGAAAGAAAAAGGTTTTACCAGA 60.148 37.037 0.00 0.00 41.95 3.86
267 268 7.348080 AGGAAAGAAAAAGGTTTTACCAGAG 57.652 36.000 0.00 0.00 41.95 3.35
268 269 5.983720 GGAAAGAAAAAGGTTTTACCAGAGC 59.016 40.000 0.00 0.00 41.95 4.09
269 270 6.406512 GGAAAGAAAAAGGTTTTACCAGAGCA 60.407 38.462 0.00 0.00 41.95 4.26
270 271 5.774498 AGAAAAAGGTTTTACCAGAGCAG 57.226 39.130 0.00 0.00 41.95 4.24
271 272 4.584743 AGAAAAAGGTTTTACCAGAGCAGG 59.415 41.667 0.00 0.00 41.95 4.85
272 273 3.595190 AAAGGTTTTACCAGAGCAGGT 57.405 42.857 0.00 1.10 41.95 4.00
273 274 2.568623 AGGTTTTACCAGAGCAGGTG 57.431 50.000 5.84 0.00 41.95 4.00
274 275 1.774856 AGGTTTTACCAGAGCAGGTGT 59.225 47.619 5.84 0.00 41.95 4.16
275 276 2.174854 AGGTTTTACCAGAGCAGGTGTT 59.825 45.455 5.84 0.00 41.95 3.32
276 277 3.393278 AGGTTTTACCAGAGCAGGTGTTA 59.607 43.478 5.84 0.00 41.95 2.41
277 278 4.042934 AGGTTTTACCAGAGCAGGTGTTAT 59.957 41.667 5.84 0.00 41.95 1.89
278 279 4.395231 GGTTTTACCAGAGCAGGTGTTATC 59.605 45.833 5.84 0.00 43.14 1.75
279 280 5.246307 GTTTTACCAGAGCAGGTGTTATCT 58.754 41.667 5.84 0.00 43.14 1.98
280 281 4.737855 TTACCAGAGCAGGTGTTATCTC 57.262 45.455 5.84 0.00 43.14 2.75
281 282 1.478510 ACCAGAGCAGGTGTTATCTCG 59.521 52.381 0.00 0.00 41.30 4.04
282 283 1.202463 CCAGAGCAGGTGTTATCTCGG 60.202 57.143 0.00 0.00 0.00 4.63
283 284 1.115467 AGAGCAGGTGTTATCTCGGG 58.885 55.000 0.00 0.00 0.00 5.14
284 285 1.112113 GAGCAGGTGTTATCTCGGGA 58.888 55.000 0.00 0.00 0.00 5.14
285 286 0.824759 AGCAGGTGTTATCTCGGGAC 59.175 55.000 0.00 0.00 0.00 4.46
298 299 2.990479 GGGACGTCAGATGCCCTT 59.010 61.111 18.91 0.00 37.59 3.95
299 300 1.299976 GGGACGTCAGATGCCCTTT 59.700 57.895 18.91 0.00 37.59 3.11
300 301 0.744771 GGGACGTCAGATGCCCTTTC 60.745 60.000 18.91 0.00 37.59 2.62
301 302 0.250513 GGACGTCAGATGCCCTTTCT 59.749 55.000 18.91 0.00 0.00 2.52
302 303 1.646189 GACGTCAGATGCCCTTTCTC 58.354 55.000 11.55 0.00 0.00 2.87
303 304 1.205893 GACGTCAGATGCCCTTTCTCT 59.794 52.381 11.55 0.00 0.00 3.10
304 305 1.205893 ACGTCAGATGCCCTTTCTCTC 59.794 52.381 0.00 0.00 0.00 3.20
305 306 1.800655 CGTCAGATGCCCTTTCTCTCG 60.801 57.143 0.00 0.00 0.00 4.04
306 307 0.176680 TCAGATGCCCTTTCTCTCGC 59.823 55.000 0.00 0.00 0.00 5.03
307 308 0.177604 CAGATGCCCTTTCTCTCGCT 59.822 55.000 0.00 0.00 0.00 4.93
308 309 0.908198 AGATGCCCTTTCTCTCGCTT 59.092 50.000 0.00 0.00 0.00 4.68
309 310 1.134551 AGATGCCCTTTCTCTCGCTTC 60.135 52.381 0.00 0.00 0.00 3.86
310 311 0.908198 ATGCCCTTTCTCTCGCTTCT 59.092 50.000 0.00 0.00 0.00 2.85
311 312 0.687354 TGCCCTTTCTCTCGCTTCTT 59.313 50.000 0.00 0.00 0.00 2.52
312 313 1.072331 TGCCCTTTCTCTCGCTTCTTT 59.928 47.619 0.00 0.00 0.00 2.52
313 314 2.155279 GCCCTTTCTCTCGCTTCTTTT 58.845 47.619 0.00 0.00 0.00 2.27
314 315 3.244422 TGCCCTTTCTCTCGCTTCTTTTA 60.244 43.478 0.00 0.00 0.00 1.52
315 316 3.942115 GCCCTTTCTCTCGCTTCTTTTAT 59.058 43.478 0.00 0.00 0.00 1.40
316 317 4.034626 GCCCTTTCTCTCGCTTCTTTTATC 59.965 45.833 0.00 0.00 0.00 1.75
317 318 5.423886 CCCTTTCTCTCGCTTCTTTTATCT 58.576 41.667 0.00 0.00 0.00 1.98
318 319 5.293079 CCCTTTCTCTCGCTTCTTTTATCTG 59.707 44.000 0.00 0.00 0.00 2.90
319 320 5.293079 CCTTTCTCTCGCTTCTTTTATCTGG 59.707 44.000 0.00 0.00 0.00 3.86
320 321 5.407407 TTCTCTCGCTTCTTTTATCTGGT 57.593 39.130 0.00 0.00 0.00 4.00
321 322 4.748892 TCTCTCGCTTCTTTTATCTGGTG 58.251 43.478 0.00 0.00 0.00 4.17
322 323 3.861840 TCTCGCTTCTTTTATCTGGTGG 58.138 45.455 0.00 0.00 0.00 4.61
323 324 3.513912 TCTCGCTTCTTTTATCTGGTGGA 59.486 43.478 0.00 0.00 0.00 4.02
324 325 3.861840 TCGCTTCTTTTATCTGGTGGAG 58.138 45.455 0.00 0.00 0.00 3.86
325 326 2.939103 CGCTTCTTTTATCTGGTGGAGG 59.061 50.000 0.00 0.00 0.00 4.30
326 327 3.619979 CGCTTCTTTTATCTGGTGGAGGT 60.620 47.826 0.00 0.00 0.00 3.85
327 328 4.336280 GCTTCTTTTATCTGGTGGAGGTT 58.664 43.478 0.00 0.00 0.00 3.50
328 329 4.767409 GCTTCTTTTATCTGGTGGAGGTTT 59.233 41.667 0.00 0.00 0.00 3.27
329 330 5.243954 GCTTCTTTTATCTGGTGGAGGTTTT 59.756 40.000 0.00 0.00 0.00 2.43
330 331 6.433093 GCTTCTTTTATCTGGTGGAGGTTTTA 59.567 38.462 0.00 0.00 0.00 1.52
331 332 7.575155 GCTTCTTTTATCTGGTGGAGGTTTTAC 60.575 40.741 0.00 0.00 0.00 2.01
332 333 6.243148 TCTTTTATCTGGTGGAGGTTTTACC 58.757 40.000 0.00 0.00 38.99 2.85
346 347 5.428496 GGTTTTACCTGGACACAGTAAAC 57.572 43.478 0.00 0.00 43.36 2.01
347 348 4.883006 GGTTTTACCTGGACACAGTAAACA 59.117 41.667 0.00 0.00 43.36 2.83
348 349 5.357596 GGTTTTACCTGGACACAGTAAACAA 59.642 40.000 0.00 0.00 43.36 2.83
349 350 6.260377 GTTTTACCTGGACACAGTAAACAAC 58.740 40.000 0.00 0.00 43.36 3.32
350 351 3.637911 ACCTGGACACAGTAAACAACA 57.362 42.857 0.00 0.00 43.36 3.33
351 352 3.275999 ACCTGGACACAGTAAACAACAC 58.724 45.455 0.00 0.00 43.36 3.32
352 353 2.286833 CCTGGACACAGTAAACAACACG 59.713 50.000 0.00 0.00 43.36 4.49
353 354 2.933906 CTGGACACAGTAAACAACACGT 59.066 45.455 0.00 0.00 39.92 4.49
354 355 4.114073 CTGGACACAGTAAACAACACGTA 58.886 43.478 0.00 0.00 39.92 3.57
355 356 4.114073 TGGACACAGTAAACAACACGTAG 58.886 43.478 0.00 0.00 0.00 3.51
356 357 4.142204 TGGACACAGTAAACAACACGTAGA 60.142 41.667 0.00 0.00 0.00 2.59
357 358 4.207841 GGACACAGTAAACAACACGTAGAC 59.792 45.833 0.00 0.00 0.00 2.59
358 359 3.792956 ACACAGTAAACAACACGTAGACG 59.207 43.478 0.00 0.00 46.33 4.18
368 369 2.320383 CGTAGACGTCGCGAGGAG 59.680 66.667 32.99 18.79 34.11 3.69
369 370 2.708255 GTAGACGTCGCGAGGAGG 59.292 66.667 32.99 14.53 36.61 4.30
370 371 2.105466 GTAGACGTCGCGAGGAGGT 61.105 63.158 32.99 17.63 45.88 3.85
371 372 2.104859 TAGACGTCGCGAGGAGGTG 61.105 63.158 32.99 10.84 43.42 4.00
375 376 4.057428 GTCGCGAGGAGGTGCAGT 62.057 66.667 10.24 0.00 0.00 4.40
376 377 3.303135 TCGCGAGGAGGTGCAGTT 61.303 61.111 3.71 0.00 0.00 3.16
377 378 3.114616 CGCGAGGAGGTGCAGTTG 61.115 66.667 0.00 0.00 0.00 3.16
378 379 2.031163 GCGAGGAGGTGCAGTTGT 59.969 61.111 0.00 0.00 0.00 3.32
379 380 2.320587 GCGAGGAGGTGCAGTTGTG 61.321 63.158 0.00 0.00 0.00 3.33
380 381 1.069765 CGAGGAGGTGCAGTTGTGT 59.930 57.895 0.00 0.00 0.00 3.72
381 382 0.946221 CGAGGAGGTGCAGTTGTGTC 60.946 60.000 0.00 0.00 0.00 3.67
382 383 0.946221 GAGGAGGTGCAGTTGTGTCG 60.946 60.000 0.00 0.00 0.00 4.35
383 384 1.069090 GGAGGTGCAGTTGTGTCGA 59.931 57.895 0.00 0.00 0.00 4.20
384 385 1.222115 GGAGGTGCAGTTGTGTCGAC 61.222 60.000 9.11 9.11 0.00 4.20
385 386 0.249489 GAGGTGCAGTTGTGTCGACT 60.249 55.000 17.92 0.00 0.00 4.18
386 387 0.249489 AGGTGCAGTTGTGTCGACTC 60.249 55.000 17.92 14.12 0.00 3.36
387 388 0.249489 GGTGCAGTTGTGTCGACTCT 60.249 55.000 17.92 7.16 0.00 3.24
388 389 1.571919 GTGCAGTTGTGTCGACTCTT 58.428 50.000 17.92 0.87 0.00 2.85
389 390 2.545113 GGTGCAGTTGTGTCGACTCTTA 60.545 50.000 17.92 3.16 0.00 2.10
390 391 3.318017 GTGCAGTTGTGTCGACTCTTAT 58.682 45.455 17.92 0.43 0.00 1.73
391 392 3.741344 GTGCAGTTGTGTCGACTCTTATT 59.259 43.478 17.92 0.29 0.00 1.40
392 393 3.740832 TGCAGTTGTGTCGACTCTTATTG 59.259 43.478 17.92 12.68 0.00 1.90
393 394 3.741344 GCAGTTGTGTCGACTCTTATTGT 59.259 43.478 17.92 0.00 0.00 2.71
394 395 4.376413 GCAGTTGTGTCGACTCTTATTGTG 60.376 45.833 17.92 7.63 0.00 3.33
395 396 4.745125 CAGTTGTGTCGACTCTTATTGTGT 59.255 41.667 17.92 0.00 0.00 3.72
396 397 5.234329 CAGTTGTGTCGACTCTTATTGTGTT 59.766 40.000 17.92 0.00 0.00 3.32
397 398 5.815740 AGTTGTGTCGACTCTTATTGTGTTT 59.184 36.000 17.92 0.00 0.00 2.83
398 399 6.982141 AGTTGTGTCGACTCTTATTGTGTTTA 59.018 34.615 17.92 0.00 0.00 2.01
399 400 7.493320 AGTTGTGTCGACTCTTATTGTGTTTAA 59.507 33.333 17.92 0.00 0.00 1.52
400 401 7.956420 TGTGTCGACTCTTATTGTGTTTAAT 57.044 32.000 17.92 0.00 0.00 1.40
401 402 8.014322 TGTGTCGACTCTTATTGTGTTTAATC 57.986 34.615 17.92 0.00 0.00 1.75
402 403 7.654116 TGTGTCGACTCTTATTGTGTTTAATCA 59.346 33.333 17.92 0.00 0.00 2.57
418 419 6.127479 TGTTTAATCACACCAATAATCTGCCC 60.127 38.462 0.00 0.00 0.00 5.36
419 420 2.036958 TCACACCAATAATCTGCCCG 57.963 50.000 0.00 0.00 0.00 6.13
427 428 3.951680 CCAATAATCTGCCCGGTTAAACT 59.048 43.478 0.00 0.00 0.00 2.66
443 444 2.472695 AACTACTGATGCGCCTCAAA 57.527 45.000 16.28 6.97 0.00 2.69
446 447 2.289694 ACTACTGATGCGCCTCAAAACT 60.290 45.455 16.28 2.63 0.00 2.66
451 452 2.360483 TGATGCGCCTCAAAACTTTTCA 59.640 40.909 13.26 0.00 0.00 2.69
452 453 2.490328 TGCGCCTCAAAACTTTTCAG 57.510 45.000 4.18 0.00 0.00 3.02
499 500 0.963355 TGGCATTTCACCCTAACCGC 60.963 55.000 0.00 0.00 0.00 5.68
506 507 0.034337 TCACCCTAACCGCAACTCAC 59.966 55.000 0.00 0.00 0.00 3.51
508 509 1.740296 CCCTAACCGCAACTCACCG 60.740 63.158 0.00 0.00 0.00 4.94
510 511 0.736325 CCTAACCGCAACTCACCGAG 60.736 60.000 0.00 0.00 35.52 4.63
527 528 2.480419 CCGAGTGGTTCTTCAACATCAC 59.520 50.000 0.00 0.00 33.70 3.06
529 530 3.430218 CGAGTGGTTCTTCAACATCACTC 59.570 47.826 10.23 10.23 42.56 3.51
530 531 4.380531 GAGTGGTTCTTCAACATCACTCA 58.619 43.478 14.09 0.00 43.91 3.41
542 543 3.505386 ACATCACTCACTTCAGACCTCT 58.495 45.455 0.00 0.00 0.00 3.69
553 554 6.049149 CACTTCAGACCTCTGTTTAGTTTCA 58.951 40.000 2.25 0.00 44.12 2.69
556 557 5.794894 TCAGACCTCTGTTTAGTTTCATCC 58.205 41.667 2.25 0.00 44.12 3.51
557 559 5.306937 TCAGACCTCTGTTTAGTTTCATCCA 59.693 40.000 2.25 0.00 44.12 3.41
558 560 5.997746 CAGACCTCTGTTTAGTTTCATCCAA 59.002 40.000 0.00 0.00 39.09 3.53
567 569 6.716628 TGTTTAGTTTCATCCAAGCTTCATCT 59.283 34.615 0.00 0.00 0.00 2.90
568 570 6.748333 TTAGTTTCATCCAAGCTTCATCTG 57.252 37.500 0.00 0.00 0.00 2.90
571 573 1.213678 TCATCCAAGCTTCATCTGGGG 59.786 52.381 0.00 0.00 0.00 4.96
588 590 1.272147 GGGGCATTGATAGATCACCCC 60.272 57.143 16.19 16.19 46.94 4.95
595 597 1.878656 GATAGATCACCCCGGGCTCG 61.879 65.000 17.73 3.81 0.00 5.03
608 610 1.134367 CGGGCTCGAGTCTGTAATCAA 59.866 52.381 17.94 0.00 39.00 2.57
610 612 2.094182 GGGCTCGAGTCTGTAATCAACA 60.094 50.000 17.97 0.00 36.42 3.33
614 616 4.090642 GCTCGAGTCTGTAATCAACAACAG 59.909 45.833 15.13 0.00 43.63 3.16
630 775 4.332828 ACAACAGTTGCCCTATTAAGACC 58.667 43.478 13.56 0.00 0.00 3.85
639 784 4.200092 GCCCTATTAAGACCCACAAAGAG 58.800 47.826 0.00 0.00 0.00 2.85
649 806 4.038402 AGACCCACAAAGAGCAAATCAAAG 59.962 41.667 0.00 0.00 0.00 2.77
655 812 7.820872 CCCACAAAGAGCAAATCAAAGAAATAT 59.179 33.333 0.00 0.00 0.00 1.28
718 884 8.782339 GACTAGAGTTATAGTCCAGGAGTATC 57.218 42.308 18.86 7.22 43.91 2.24
791 2265 3.219281 TCACAACTTCCAAGGGCTAAAC 58.781 45.455 0.00 0.00 0.00 2.01
848 2324 1.062880 TCGCAACCGAAAAGTGTGAAC 59.937 47.619 0.00 0.00 41.17 3.18
895 2376 2.820037 GCTAGGGCCACACGCTTC 60.820 66.667 6.18 0.00 42.50 3.86
896 2377 2.125106 CTAGGGCCACACGCTTCC 60.125 66.667 6.18 0.00 42.50 3.46
897 2378 3.682292 CTAGGGCCACACGCTTCCC 62.682 68.421 6.18 0.00 42.50 3.97
899 2380 4.660938 GGGCCACACGCTTCCCTT 62.661 66.667 4.39 0.00 37.74 3.95
900 2381 3.056328 GGCCACACGCTTCCCTTC 61.056 66.667 0.00 0.00 37.74 3.46
934 2415 3.368948 GCTCCCAAACTGAAAACCAAACA 60.369 43.478 0.00 0.00 0.00 2.83
987 2472 4.192997 ATCTCCGGCCTCCCCCAT 62.193 66.667 0.00 0.00 0.00 4.00
2075 3563 2.025887 AGGTTCCAATCCACTGATGACC 60.026 50.000 0.00 0.00 0.00 4.02
2254 3750 3.727726 CATTTCCAAACCAAACACCTCC 58.272 45.455 0.00 0.00 0.00 4.30
2258 3754 2.510382 TCCAAACCAAACACCTCCAGTA 59.490 45.455 0.00 0.00 0.00 2.74
2259 3755 3.053544 TCCAAACCAAACACCTCCAGTAA 60.054 43.478 0.00 0.00 0.00 2.24
2263 3765 4.178956 ACCAAACACCTCCAGTAAATGT 57.821 40.909 0.00 0.00 0.00 2.71
2288 3795 5.461078 TGTGTTGCGTACTTACTTTCTCTTC 59.539 40.000 0.00 0.00 0.00 2.87
2350 3859 4.439057 TGTTCGATGACCCTAGTAAATGC 58.561 43.478 0.00 0.00 0.00 3.56
2354 3863 4.161565 TCGATGACCCTAGTAAATGCTTGT 59.838 41.667 0.00 0.00 0.00 3.16
2362 3871 8.051901 ACCCTAGTAAATGCTTGTTAAATGTC 57.948 34.615 0.00 0.00 0.00 3.06
2369 3878 9.329913 GTAAATGCTTGTTAAATGTCAGTACTG 57.670 33.333 17.17 17.17 0.00 2.74
2372 3881 5.530915 TGCTTGTTAAATGTCAGTACTGCTT 59.469 36.000 18.45 10.50 0.00 3.91
2373 3882 6.708502 TGCTTGTTAAATGTCAGTACTGCTTA 59.291 34.615 18.45 9.60 0.00 3.09
2374 3883 7.015877 GCTTGTTAAATGTCAGTACTGCTTAC 58.984 38.462 18.45 11.73 0.00 2.34
2381 3890 5.791367 TGTCAGTACTGCTTACTACTACG 57.209 43.478 18.45 0.00 39.18 3.51
2384 3899 6.311445 TGTCAGTACTGCTTACTACTACGTAC 59.689 42.308 18.45 6.34 39.18 3.67
2411 3926 8.999220 AGTAGAGGTTAAATGTTACTGCTTAC 57.001 34.615 0.00 0.00 0.00 2.34
2413 3928 7.907214 AGAGGTTAAATGTTACTGCTTACTG 57.093 36.000 0.00 0.00 0.00 2.74
2414 3929 7.450903 AGAGGTTAAATGTTACTGCTTACTGT 58.549 34.615 0.00 0.00 0.00 3.55
2416 3931 9.211485 GAGGTTAAATGTTACTGCTTACTGTTA 57.789 33.333 0.00 0.00 0.00 2.41
2417 3932 8.996271 AGGTTAAATGTTACTGCTTACTGTTAC 58.004 33.333 0.00 0.00 0.00 2.50
2467 4005 1.470098 GAACTGTACTGCAAGGCATGG 59.530 52.381 0.00 0.00 38.13 3.66
2470 4008 1.678635 GTACTGCAAGGCATGGGCA 60.679 57.895 0.00 0.00 43.71 5.36
2615 4161 1.202486 CCACATGCCATGCCTGAATTC 60.202 52.381 4.17 0.00 0.00 2.17
2641 4187 4.503314 GGGCCGCAGCAGCATTTC 62.503 66.667 2.31 0.00 42.56 2.17
2642 4188 3.751246 GGCCGCAGCAGCATTTCA 61.751 61.111 2.31 0.00 42.56 2.69
2643 4189 2.202570 GCCGCAGCAGCATTTCAG 60.203 61.111 0.82 0.00 42.27 3.02
2644 4190 2.488355 CCGCAGCAGCATTTCAGG 59.512 61.111 0.82 0.00 42.27 3.86
2645 4191 2.202570 CGCAGCAGCATTTCAGGC 60.203 61.111 0.82 0.00 42.27 4.85
2646 4192 2.183555 GCAGCAGCATTTCAGGCC 59.816 61.111 0.00 0.00 41.58 5.19
2647 4193 2.642254 GCAGCAGCATTTCAGGCCA 61.642 57.895 5.01 0.00 41.58 5.36
2648 4194 1.511305 CAGCAGCATTTCAGGCCAG 59.489 57.895 5.01 0.00 0.00 4.85
2649 4195 2.183555 GCAGCATTTCAGGCCAGC 59.816 61.111 5.01 0.00 0.00 4.85
2650 4196 2.488355 CAGCATTTCAGGCCAGCG 59.512 61.111 5.01 0.00 0.00 5.18
2651 4197 2.753043 AGCATTTCAGGCCAGCGG 60.753 61.111 5.01 0.00 0.00 5.52
2782 4343 2.999185 TCTTGGATGCCCCTTTTCTT 57.001 45.000 0.00 0.00 35.38 2.52
2785 4346 2.692709 TGGATGCCCCTTTTCTTTCA 57.307 45.000 0.00 0.00 35.38 2.69
2827 4392 1.259544 CTCGTGCGGCGTTTTTGAAC 61.260 55.000 9.37 0.00 42.13 3.18
2844 4409 1.660560 AACGCCATCTGCTGATTGGC 61.661 55.000 24.22 24.22 40.35 4.52
2870 4435 1.601166 AAGTAAAGTGGCCGTTGGAC 58.399 50.000 0.00 0.00 0.00 4.02
2899 4464 7.675062 ACTAATAAGATCTGATTGGCCTAGTG 58.325 38.462 14.79 0.00 0.00 2.74
2958 4530 7.606073 TCAATCGGTGAGTGAGAAATTATTTGA 59.394 33.333 0.00 0.00 31.64 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.442526 CCATCCCTGCTCGTTCATGC 61.443 60.000 0.00 0.00 0.00 4.06
1 2 0.816825 CCCATCCCTGCTCGTTCATG 60.817 60.000 0.00 0.00 0.00 3.07
2 3 1.528824 CCCATCCCTGCTCGTTCAT 59.471 57.895 0.00 0.00 0.00 2.57
3 4 2.669133 CCCCATCCCTGCTCGTTCA 61.669 63.158 0.00 0.00 0.00 3.18
4 5 2.190578 CCCCATCCCTGCTCGTTC 59.809 66.667 0.00 0.00 0.00 3.95
5 6 3.411517 CCCCCATCCCTGCTCGTT 61.412 66.667 0.00 0.00 0.00 3.85
10 11 4.928140 CATGGCCCCCATCCCTGC 62.928 72.222 0.00 0.00 43.15 4.85
11 12 4.229073 CCATGGCCCCCATCCCTG 62.229 72.222 0.00 0.00 43.15 4.45
33 34 4.151582 TAGGGTTACTGCGGCCGC 62.152 66.667 42.35 42.35 42.35 6.53
34 35 2.106332 CTAGGGTTACTGCGGCCG 59.894 66.667 24.05 24.05 0.00 6.13
35 36 2.203029 GCTAGGGTTACTGCGGCC 60.203 66.667 0.00 0.00 0.00 6.13
36 37 2.585247 CGCTAGGGTTACTGCGGC 60.585 66.667 0.00 0.00 40.54 6.53
38 39 2.585247 GCCGCTAGGGTTACTGCG 60.585 66.667 6.02 0.00 42.40 5.18
39 40 2.567564 TTCGCCGCTAGGGTTACTGC 62.568 60.000 6.02 0.70 38.44 4.40
40 41 0.527817 CTTCGCCGCTAGGGTTACTG 60.528 60.000 6.02 0.00 38.44 2.74
41 42 1.673808 CCTTCGCCGCTAGGGTTACT 61.674 60.000 6.02 0.00 38.44 2.24
42 43 1.227176 CCTTCGCCGCTAGGGTTAC 60.227 63.158 6.02 0.00 38.44 2.50
43 44 3.085119 GCCTTCGCCGCTAGGGTTA 62.085 63.158 6.02 0.00 38.44 2.85
44 45 4.468689 GCCTTCGCCGCTAGGGTT 62.469 66.667 6.02 0.00 38.44 4.11
53 54 4.821589 CTCAGGTCCGCCTTCGCC 62.822 72.222 0.00 0.00 44.18 5.54
56 57 3.760035 TCGCTCAGGTCCGCCTTC 61.760 66.667 0.00 0.00 44.18 3.46
57 58 4.070552 GTCGCTCAGGTCCGCCTT 62.071 66.667 0.00 0.00 44.18 4.35
61 62 3.827898 GAGGGTCGCTCAGGTCCG 61.828 72.222 11.84 0.00 0.00 4.79
62 63 3.462678 GGAGGGTCGCTCAGGTCC 61.463 72.222 17.79 0.00 0.00 4.46
63 64 3.462678 GGGAGGGTCGCTCAGGTC 61.463 72.222 17.79 1.36 0.00 3.85
64 65 3.846405 TTGGGAGGGTCGCTCAGGT 62.846 63.158 17.79 0.00 0.00 4.00
65 66 3.003173 TTGGGAGGGTCGCTCAGG 61.003 66.667 17.79 0.00 0.00 3.86
66 67 2.266055 GTTGGGAGGGTCGCTCAG 59.734 66.667 17.79 0.00 0.00 3.35
67 68 3.319198 GGTTGGGAGGGTCGCTCA 61.319 66.667 17.79 0.00 0.00 4.26
68 69 4.097361 GGGTTGGGAGGGTCGCTC 62.097 72.222 8.38 8.38 0.00 5.03
69 70 4.974438 TGGGTTGGGAGGGTCGCT 62.974 66.667 0.00 0.00 0.00 4.93
70 71 3.728373 ATGGGTTGGGAGGGTCGC 61.728 66.667 0.00 0.00 0.00 5.19
71 72 2.272146 CATGGGTTGGGAGGGTCG 59.728 66.667 0.00 0.00 0.00 4.79
72 73 2.043953 GCATGGGTTGGGAGGGTC 60.044 66.667 0.00 0.00 0.00 4.46
73 74 3.672503 GGCATGGGTTGGGAGGGT 61.673 66.667 0.00 0.00 0.00 4.34
74 75 4.463788 GGGCATGGGTTGGGAGGG 62.464 72.222 0.00 0.00 0.00 4.30
75 76 4.463788 GGGGCATGGGTTGGGAGG 62.464 72.222 0.00 0.00 0.00 4.30
76 77 4.820744 CGGGGCATGGGTTGGGAG 62.821 72.222 0.00 0.00 0.00 4.30
98 99 3.607661 GATCCTCCCTCCGTCGCC 61.608 72.222 0.00 0.00 0.00 5.54
99 100 3.607661 GGATCCTCCCTCCGTCGC 61.608 72.222 3.84 0.00 0.00 5.19
105 106 4.916314 TCCCGCGGATCCTCCCTC 62.916 72.222 30.73 0.00 31.13 4.30
106 107 4.924187 CTCCCGCGGATCCTCCCT 62.924 72.222 30.73 0.00 31.13 4.20
109 110 4.292178 CTGCTCCCGCGGATCCTC 62.292 72.222 30.73 11.24 45.62 3.71
130 131 4.452733 GAAGGACCTCGTGCCCGG 62.453 72.222 0.00 0.00 33.95 5.73
131 132 3.358076 GAGAAGGACCTCGTGCCCG 62.358 68.421 0.00 0.00 0.00 6.13
132 133 2.579738 GAGAAGGACCTCGTGCCC 59.420 66.667 0.00 0.00 0.00 5.36
138 139 2.896443 CCAGCCGAGAAGGACCTC 59.104 66.667 0.00 0.00 45.00 3.85
139 140 3.394836 GCCAGCCGAGAAGGACCT 61.395 66.667 0.00 0.00 45.00 3.85
140 141 3.672295 CTGCCAGCCGAGAAGGACC 62.672 68.421 0.00 0.00 45.00 4.46
141 142 2.125350 CTGCCAGCCGAGAAGGAC 60.125 66.667 0.00 0.00 45.00 3.85
142 143 4.087892 GCTGCCAGCCGAGAAGGA 62.088 66.667 5.06 0.00 45.00 3.36
143 144 4.093291 AGCTGCCAGCCGAGAAGG 62.093 66.667 14.25 0.00 43.77 3.46
144 145 2.818714 CAGCTGCCAGCCGAGAAG 60.819 66.667 14.25 0.00 43.77 2.85
145 146 4.399395 CCAGCTGCCAGCCGAGAA 62.399 66.667 14.25 0.00 43.77 2.87
147 148 3.774528 TACCAGCTGCCAGCCGAG 61.775 66.667 14.25 4.79 43.77 4.63
148 149 4.082523 GTACCAGCTGCCAGCCGA 62.083 66.667 14.25 0.00 43.77 5.54
149 150 4.393155 TGTACCAGCTGCCAGCCG 62.393 66.667 14.25 2.19 43.77 5.52
150 151 2.437359 CTGTACCAGCTGCCAGCC 60.437 66.667 14.25 0.00 43.77 4.85
159 160 1.429825 CGACCTCGAGCTGTACCAG 59.570 63.158 6.99 0.00 43.02 4.00
160 161 2.697761 GCGACCTCGAGCTGTACCA 61.698 63.158 6.99 0.00 43.02 3.25
161 162 2.102553 GCGACCTCGAGCTGTACC 59.897 66.667 6.99 0.00 43.02 3.34
162 163 2.277373 CGCGACCTCGAGCTGTAC 60.277 66.667 6.99 0.00 43.02 2.90
163 164 2.745100 ACGCGACCTCGAGCTGTA 60.745 61.111 15.93 0.00 42.87 2.74
164 165 4.406173 CACGCGACCTCGAGCTGT 62.406 66.667 15.93 0.00 42.87 4.40
168 169 4.180946 CTCCCACGCGACCTCGAG 62.181 72.222 15.93 5.13 44.60 4.04
169 170 4.710167 TCTCCCACGCGACCTCGA 62.710 66.667 15.93 0.00 43.02 4.04
170 171 4.477975 GTCTCCCACGCGACCTCG 62.478 72.222 15.93 0.00 43.27 4.63
171 172 2.711922 ATGTCTCCCACGCGACCTC 61.712 63.158 15.93 0.00 0.00 3.85
172 173 2.680352 ATGTCTCCCACGCGACCT 60.680 61.111 15.93 0.00 0.00 3.85
173 174 2.501223 TTCATGTCTCCCACGCGACC 62.501 60.000 15.93 0.00 0.00 4.79
174 175 0.669318 TTTCATGTCTCCCACGCGAC 60.669 55.000 15.93 0.00 0.00 5.19
175 176 0.389817 CTTTCATGTCTCCCACGCGA 60.390 55.000 15.93 0.00 0.00 5.87
176 177 0.389817 TCTTTCATGTCTCCCACGCG 60.390 55.000 3.53 3.53 0.00 6.01
177 178 1.363744 CTCTTTCATGTCTCCCACGC 58.636 55.000 0.00 0.00 0.00 5.34
178 179 1.276421 ACCTCTTTCATGTCTCCCACG 59.724 52.381 0.00 0.00 0.00 4.94
179 180 3.077359 CAACCTCTTTCATGTCTCCCAC 58.923 50.000 0.00 0.00 0.00 4.61
180 181 2.553028 GCAACCTCTTTCATGTCTCCCA 60.553 50.000 0.00 0.00 0.00 4.37
181 182 2.087646 GCAACCTCTTTCATGTCTCCC 58.912 52.381 0.00 0.00 0.00 4.30
182 183 1.734465 CGCAACCTCTTTCATGTCTCC 59.266 52.381 0.00 0.00 0.00 3.71
183 184 2.158449 CACGCAACCTCTTTCATGTCTC 59.842 50.000 0.00 0.00 0.00 3.36
184 185 2.146342 CACGCAACCTCTTTCATGTCT 58.854 47.619 0.00 0.00 0.00 3.41
185 186 1.400242 GCACGCAACCTCTTTCATGTC 60.400 52.381 0.00 0.00 0.00 3.06
186 187 0.593128 GCACGCAACCTCTTTCATGT 59.407 50.000 0.00 0.00 0.00 3.21
187 188 0.592637 TGCACGCAACCTCTTTCATG 59.407 50.000 0.00 0.00 0.00 3.07
188 189 1.200716 CATGCACGCAACCTCTTTCAT 59.799 47.619 0.00 0.00 0.00 2.57
189 190 0.592637 CATGCACGCAACCTCTTTCA 59.407 50.000 0.00 0.00 0.00 2.69
190 191 0.109597 CCATGCACGCAACCTCTTTC 60.110 55.000 0.00 0.00 0.00 2.62
191 192 0.537143 TCCATGCACGCAACCTCTTT 60.537 50.000 0.00 0.00 0.00 2.52
192 193 0.957395 CTCCATGCACGCAACCTCTT 60.957 55.000 0.00 0.00 0.00 2.85
193 194 1.376424 CTCCATGCACGCAACCTCT 60.376 57.895 0.00 0.00 0.00 3.69
194 195 2.401766 CCTCCATGCACGCAACCTC 61.402 63.158 0.00 0.00 0.00 3.85
195 196 2.360350 CCTCCATGCACGCAACCT 60.360 61.111 0.00 0.00 0.00 3.50
196 197 2.359850 TCCTCCATGCACGCAACC 60.360 61.111 0.00 0.00 0.00 3.77
197 198 0.955428 TTCTCCTCCATGCACGCAAC 60.955 55.000 0.00 0.00 0.00 4.17
198 199 0.250684 TTTCTCCTCCATGCACGCAA 60.251 50.000 0.00 0.00 0.00 4.85
199 200 0.955428 GTTTCTCCTCCATGCACGCA 60.955 55.000 0.00 0.00 0.00 5.24
200 201 0.955428 TGTTTCTCCTCCATGCACGC 60.955 55.000 0.00 0.00 0.00 5.34
201 202 1.081892 CTGTTTCTCCTCCATGCACG 58.918 55.000 0.00 0.00 0.00 5.34
202 203 2.027745 TCTCTGTTTCTCCTCCATGCAC 60.028 50.000 0.00 0.00 0.00 4.57
203 204 2.259917 TCTCTGTTTCTCCTCCATGCA 58.740 47.619 0.00 0.00 0.00 3.96
204 205 3.269178 CTTCTCTGTTTCTCCTCCATGC 58.731 50.000 0.00 0.00 0.00 4.06
205 206 3.370315 CCCTTCTCTGTTTCTCCTCCATG 60.370 52.174 0.00 0.00 0.00 3.66
206 207 2.843113 CCCTTCTCTGTTTCTCCTCCAT 59.157 50.000 0.00 0.00 0.00 3.41
207 208 2.158158 TCCCTTCTCTGTTTCTCCTCCA 60.158 50.000 0.00 0.00 0.00 3.86
208 209 2.541466 TCCCTTCTCTGTTTCTCCTCC 58.459 52.381 0.00 0.00 0.00 4.30
209 210 3.118445 CCATCCCTTCTCTGTTTCTCCTC 60.118 52.174 0.00 0.00 0.00 3.71
210 211 2.843113 CCATCCCTTCTCTGTTTCTCCT 59.157 50.000 0.00 0.00 0.00 3.69
211 212 2.682269 GCCATCCCTTCTCTGTTTCTCC 60.682 54.545 0.00 0.00 0.00 3.71
212 213 2.238395 AGCCATCCCTTCTCTGTTTCTC 59.762 50.000 0.00 0.00 0.00 2.87
213 214 2.273619 AGCCATCCCTTCTCTGTTTCT 58.726 47.619 0.00 0.00 0.00 2.52
214 215 2.797177 AGCCATCCCTTCTCTGTTTC 57.203 50.000 0.00 0.00 0.00 2.78
215 216 2.616510 CGAAGCCATCCCTTCTCTGTTT 60.617 50.000 0.00 0.00 39.21 2.83
216 217 1.065854 CGAAGCCATCCCTTCTCTGTT 60.066 52.381 0.00 0.00 39.21 3.16
217 218 0.539051 CGAAGCCATCCCTTCTCTGT 59.461 55.000 0.00 0.00 39.21 3.41
218 219 0.539051 ACGAAGCCATCCCTTCTCTG 59.461 55.000 0.00 0.00 39.21 3.35
219 220 2.035632 CTACGAAGCCATCCCTTCTCT 58.964 52.381 0.00 0.00 39.21 3.10
220 221 1.069358 CCTACGAAGCCATCCCTTCTC 59.931 57.143 0.00 0.00 39.21 2.87
221 222 1.123928 CCTACGAAGCCATCCCTTCT 58.876 55.000 0.00 0.00 39.21 2.85
222 223 0.106894 CCCTACGAAGCCATCCCTTC 59.893 60.000 0.00 0.00 38.24 3.46
223 224 0.326238 TCCCTACGAAGCCATCCCTT 60.326 55.000 0.00 0.00 0.00 3.95
224 225 0.326238 TTCCCTACGAAGCCATCCCT 60.326 55.000 0.00 0.00 0.00 4.20
225 226 0.106894 CTTCCCTACGAAGCCATCCC 59.893 60.000 0.00 0.00 41.61 3.85
226 227 0.106894 CCTTCCCTACGAAGCCATCC 59.893 60.000 0.00 0.00 45.83 3.51
227 228 1.120530 TCCTTCCCTACGAAGCCATC 58.879 55.000 0.00 0.00 45.83 3.51
228 229 1.580059 TTCCTTCCCTACGAAGCCAT 58.420 50.000 0.00 0.00 45.83 4.40
229 230 1.278127 CTTTCCTTCCCTACGAAGCCA 59.722 52.381 0.00 0.00 45.83 4.75
230 231 1.553704 TCTTTCCTTCCCTACGAAGCC 59.446 52.381 0.00 0.00 45.83 4.35
231 232 3.329929 TTCTTTCCTTCCCTACGAAGC 57.670 47.619 0.00 0.00 45.83 3.86
232 233 5.181433 CCTTTTTCTTTCCTTCCCTACGAAG 59.819 44.000 0.00 0.00 46.61 3.79
233 234 5.067954 CCTTTTTCTTTCCTTCCCTACGAA 58.932 41.667 0.00 0.00 0.00 3.85
234 235 4.103627 ACCTTTTTCTTTCCTTCCCTACGA 59.896 41.667 0.00 0.00 0.00 3.43
235 236 4.395625 ACCTTTTTCTTTCCTTCCCTACG 58.604 43.478 0.00 0.00 0.00 3.51
236 237 6.726490 AAACCTTTTTCTTTCCTTCCCTAC 57.274 37.500 0.00 0.00 0.00 3.18
237 238 7.288389 GGTAAAACCTTTTTCTTTCCTTCCCTA 59.712 37.037 0.00 0.00 34.73 3.53
238 239 6.099269 GGTAAAACCTTTTTCTTTCCTTCCCT 59.901 38.462 0.00 0.00 34.73 4.20
239 240 6.126997 TGGTAAAACCTTTTTCTTTCCTTCCC 60.127 38.462 0.00 0.00 39.58 3.97
240 241 6.880484 TGGTAAAACCTTTTTCTTTCCTTCC 58.120 36.000 0.00 0.00 39.58 3.46
241 242 7.778083 TCTGGTAAAACCTTTTTCTTTCCTTC 58.222 34.615 0.00 0.00 39.58 3.46
242 243 7.632898 GCTCTGGTAAAACCTTTTTCTTTCCTT 60.633 37.037 0.00 0.00 39.58 3.36
243 244 6.183360 GCTCTGGTAAAACCTTTTTCTTTCCT 60.183 38.462 0.00 0.00 39.58 3.36
244 245 5.983720 GCTCTGGTAAAACCTTTTTCTTTCC 59.016 40.000 0.00 0.00 39.58 3.13
245 246 6.569780 TGCTCTGGTAAAACCTTTTTCTTTC 58.430 36.000 0.00 0.00 39.58 2.62
246 247 6.406961 CCTGCTCTGGTAAAACCTTTTTCTTT 60.407 38.462 0.00 0.00 39.58 2.52
247 248 5.069119 CCTGCTCTGGTAAAACCTTTTTCTT 59.931 40.000 0.00 0.00 39.58 2.52
248 249 4.584743 CCTGCTCTGGTAAAACCTTTTTCT 59.415 41.667 0.00 0.00 39.58 2.52
249 250 4.341235 ACCTGCTCTGGTAAAACCTTTTTC 59.659 41.667 0.00 0.00 39.58 2.29
250 251 4.099419 CACCTGCTCTGGTAAAACCTTTTT 59.901 41.667 0.00 0.00 39.58 1.94
251 252 3.636764 CACCTGCTCTGGTAAAACCTTTT 59.363 43.478 0.00 0.00 39.58 2.27
252 253 3.222603 CACCTGCTCTGGTAAAACCTTT 58.777 45.455 0.00 0.00 39.58 3.11
253 254 2.174854 ACACCTGCTCTGGTAAAACCTT 59.825 45.455 0.00 0.00 39.58 3.50
254 255 1.774856 ACACCTGCTCTGGTAAAACCT 59.225 47.619 0.00 0.00 39.58 3.50
255 256 2.271944 ACACCTGCTCTGGTAAAACC 57.728 50.000 0.00 0.00 38.45 3.27
256 257 5.246307 AGATAACACCTGCTCTGGTAAAAC 58.754 41.667 0.00 0.00 38.45 2.43
257 258 5.488341 GAGATAACACCTGCTCTGGTAAAA 58.512 41.667 0.00 0.00 38.45 1.52
258 259 4.381612 CGAGATAACACCTGCTCTGGTAAA 60.382 45.833 0.00 0.00 38.45 2.01
259 260 3.130516 CGAGATAACACCTGCTCTGGTAA 59.869 47.826 0.00 0.00 38.45 2.85
260 261 2.688446 CGAGATAACACCTGCTCTGGTA 59.312 50.000 0.00 0.00 38.45 3.25
261 262 1.478510 CGAGATAACACCTGCTCTGGT 59.521 52.381 0.00 0.00 41.77 4.00
262 263 1.202463 CCGAGATAACACCTGCTCTGG 60.202 57.143 0.00 0.00 0.00 3.86
263 264 1.202463 CCCGAGATAACACCTGCTCTG 60.202 57.143 0.00 0.00 0.00 3.35
264 265 1.115467 CCCGAGATAACACCTGCTCT 58.885 55.000 0.00 0.00 0.00 4.09
265 266 1.112113 TCCCGAGATAACACCTGCTC 58.888 55.000 0.00 0.00 0.00 4.26
266 267 0.824759 GTCCCGAGATAACACCTGCT 59.175 55.000 0.00 0.00 0.00 4.24
267 268 0.527817 CGTCCCGAGATAACACCTGC 60.528 60.000 0.00 0.00 0.00 4.85
268 269 0.815734 ACGTCCCGAGATAACACCTG 59.184 55.000 0.00 0.00 0.00 4.00
269 270 1.101331 GACGTCCCGAGATAACACCT 58.899 55.000 3.51 0.00 0.00 4.00
270 271 0.813184 TGACGTCCCGAGATAACACC 59.187 55.000 14.12 0.00 0.00 4.16
271 272 1.741706 TCTGACGTCCCGAGATAACAC 59.258 52.381 14.12 0.00 0.00 3.32
272 273 2.118313 TCTGACGTCCCGAGATAACA 57.882 50.000 14.12 0.00 0.00 2.41
273 274 2.859032 GCATCTGACGTCCCGAGATAAC 60.859 54.545 14.12 6.91 0.00 1.89
274 275 1.337071 GCATCTGACGTCCCGAGATAA 59.663 52.381 14.12 0.00 0.00 1.75
275 276 0.952280 GCATCTGACGTCCCGAGATA 59.048 55.000 14.12 0.00 0.00 1.98
276 277 1.736586 GCATCTGACGTCCCGAGAT 59.263 57.895 14.12 11.87 0.00 2.75
277 278 2.415608 GGCATCTGACGTCCCGAGA 61.416 63.158 14.12 9.88 0.00 4.04
278 279 2.105128 GGCATCTGACGTCCCGAG 59.895 66.667 14.12 3.88 0.00 4.63
279 280 3.458163 GGGCATCTGACGTCCCGA 61.458 66.667 14.12 10.09 0.00 5.14
280 281 2.521958 AAAGGGCATCTGACGTCCCG 62.522 60.000 14.12 4.24 43.46 5.14
281 282 0.744771 GAAAGGGCATCTGACGTCCC 60.745 60.000 14.12 6.35 39.05 4.46
282 283 0.250513 AGAAAGGGCATCTGACGTCC 59.749 55.000 14.12 0.00 0.00 4.79
283 284 1.205893 AGAGAAAGGGCATCTGACGTC 59.794 52.381 9.11 9.11 0.00 4.34
284 285 1.205893 GAGAGAAAGGGCATCTGACGT 59.794 52.381 0.00 0.00 0.00 4.34
285 286 1.800655 CGAGAGAAAGGGCATCTGACG 60.801 57.143 0.00 0.00 0.00 4.35
286 287 1.933247 CGAGAGAAAGGGCATCTGAC 58.067 55.000 0.00 0.00 0.00 3.51
287 288 0.176680 GCGAGAGAAAGGGCATCTGA 59.823 55.000 0.00 0.00 0.00 3.27
288 289 0.177604 AGCGAGAGAAAGGGCATCTG 59.822 55.000 0.00 0.00 0.00 2.90
289 290 0.908198 AAGCGAGAGAAAGGGCATCT 59.092 50.000 0.00 0.00 0.00 2.90
290 291 1.134551 AGAAGCGAGAGAAAGGGCATC 60.135 52.381 0.00 0.00 0.00 3.91
291 292 0.908198 AGAAGCGAGAGAAAGGGCAT 59.092 50.000 0.00 0.00 0.00 4.40
292 293 0.687354 AAGAAGCGAGAGAAAGGGCA 59.313 50.000 0.00 0.00 0.00 5.36
293 294 1.814793 AAAGAAGCGAGAGAAAGGGC 58.185 50.000 0.00 0.00 0.00 5.19
294 295 5.293079 CAGATAAAAGAAGCGAGAGAAAGGG 59.707 44.000 0.00 0.00 0.00 3.95
295 296 5.293079 CCAGATAAAAGAAGCGAGAGAAAGG 59.707 44.000 0.00 0.00 0.00 3.11
296 297 5.872070 ACCAGATAAAAGAAGCGAGAGAAAG 59.128 40.000 0.00 0.00 0.00 2.62
297 298 5.639506 CACCAGATAAAAGAAGCGAGAGAAA 59.360 40.000 0.00 0.00 0.00 2.52
298 299 5.171476 CACCAGATAAAAGAAGCGAGAGAA 58.829 41.667 0.00 0.00 0.00 2.87
299 300 4.382040 CCACCAGATAAAAGAAGCGAGAGA 60.382 45.833 0.00 0.00 0.00 3.10
300 301 3.868077 CCACCAGATAAAAGAAGCGAGAG 59.132 47.826 0.00 0.00 0.00 3.20
301 302 3.513912 TCCACCAGATAAAAGAAGCGAGA 59.486 43.478 0.00 0.00 0.00 4.04
302 303 3.861840 TCCACCAGATAAAAGAAGCGAG 58.138 45.455 0.00 0.00 0.00 5.03
303 304 3.369471 CCTCCACCAGATAAAAGAAGCGA 60.369 47.826 0.00 0.00 0.00 4.93
304 305 2.939103 CCTCCACCAGATAAAAGAAGCG 59.061 50.000 0.00 0.00 0.00 4.68
305 306 3.956744 ACCTCCACCAGATAAAAGAAGC 58.043 45.455 0.00 0.00 0.00 3.86
306 307 6.901081 AAAACCTCCACCAGATAAAAGAAG 57.099 37.500 0.00 0.00 0.00 2.85
307 308 6.717997 GGTAAAACCTCCACCAGATAAAAGAA 59.282 38.462 0.00 0.00 34.73 2.52
308 309 6.243148 GGTAAAACCTCCACCAGATAAAAGA 58.757 40.000 0.00 0.00 34.73 2.52
309 310 6.510879 GGTAAAACCTCCACCAGATAAAAG 57.489 41.667 0.00 0.00 34.73 2.27
324 325 4.883006 TGTTTACTGTGTCCAGGTAAAACC 59.117 41.667 0.00 0.00 43.36 3.27
325 326 6.127952 TGTTGTTTACTGTGTCCAGGTAAAAC 60.128 38.462 0.00 0.00 43.36 2.43
326 327 5.944599 TGTTGTTTACTGTGTCCAGGTAAAA 59.055 36.000 0.00 0.00 43.36 1.52
327 328 5.354792 GTGTTGTTTACTGTGTCCAGGTAAA 59.645 40.000 0.00 0.00 43.36 2.01
328 329 4.877251 GTGTTGTTTACTGTGTCCAGGTAA 59.123 41.667 0.00 0.00 43.36 2.85
329 330 4.444536 GTGTTGTTTACTGTGTCCAGGTA 58.555 43.478 0.00 0.00 43.36 3.08
330 331 3.275999 GTGTTGTTTACTGTGTCCAGGT 58.724 45.455 0.00 0.00 43.36 4.00
331 332 2.286833 CGTGTTGTTTACTGTGTCCAGG 59.713 50.000 0.00 0.00 43.36 4.45
332 333 2.933906 ACGTGTTGTTTACTGTGTCCAG 59.066 45.455 0.00 0.00 44.68 3.86
333 334 2.975266 ACGTGTTGTTTACTGTGTCCA 58.025 42.857 0.00 0.00 0.00 4.02
334 335 4.207841 GTCTACGTGTTGTTTACTGTGTCC 59.792 45.833 0.00 0.00 0.00 4.02
335 336 4.085924 CGTCTACGTGTTGTTTACTGTGTC 60.086 45.833 0.00 0.00 34.11 3.67
336 337 3.792956 CGTCTACGTGTTGTTTACTGTGT 59.207 43.478 0.00 0.00 34.11 3.72
337 338 4.350425 CGTCTACGTGTTGTTTACTGTG 57.650 45.455 0.00 0.00 34.11 3.66
351 352 2.320383 CTCCTCGCGACGTCTACG 59.680 66.667 18.40 18.40 46.33 3.51
352 353 2.105466 ACCTCCTCGCGACGTCTAC 61.105 63.158 14.70 4.64 0.00 2.59
353 354 2.104859 CACCTCCTCGCGACGTCTA 61.105 63.158 14.70 0.00 0.00 2.59
354 355 3.432588 CACCTCCTCGCGACGTCT 61.433 66.667 14.70 0.00 0.00 4.18
358 359 3.575351 AACTGCACCTCCTCGCGAC 62.575 63.158 3.71 0.00 0.00 5.19
359 360 3.303135 AACTGCACCTCCTCGCGA 61.303 61.111 9.26 9.26 0.00 5.87
360 361 3.114616 CAACTGCACCTCCTCGCG 61.115 66.667 0.00 0.00 0.00 5.87
361 362 2.031163 ACAACTGCACCTCCTCGC 59.969 61.111 0.00 0.00 0.00 5.03
362 363 0.946221 GACACAACTGCACCTCCTCG 60.946 60.000 0.00 0.00 0.00 4.63
363 364 0.946221 CGACACAACTGCACCTCCTC 60.946 60.000 0.00 0.00 0.00 3.71
364 365 1.069765 CGACACAACTGCACCTCCT 59.930 57.895 0.00 0.00 0.00 3.69
365 366 1.069090 TCGACACAACTGCACCTCC 59.931 57.895 0.00 0.00 0.00 4.30
366 367 0.249489 AGTCGACACAACTGCACCTC 60.249 55.000 19.50 0.00 0.00 3.85
367 368 0.249489 GAGTCGACACAACTGCACCT 60.249 55.000 19.50 0.00 0.00 4.00
368 369 0.249489 AGAGTCGACACAACTGCACC 60.249 55.000 19.50 0.00 0.00 5.01
369 370 1.571919 AAGAGTCGACACAACTGCAC 58.428 50.000 19.50 0.00 0.00 4.57
370 371 3.660501 ATAAGAGTCGACACAACTGCA 57.339 42.857 19.50 4.20 0.00 4.41
371 372 3.741344 ACAATAAGAGTCGACACAACTGC 59.259 43.478 19.50 0.00 0.00 4.40
372 373 4.745125 ACACAATAAGAGTCGACACAACTG 59.255 41.667 19.50 9.83 0.00 3.16
373 374 4.945246 ACACAATAAGAGTCGACACAACT 58.055 39.130 19.50 8.42 0.00 3.16
374 375 5.652744 AACACAATAAGAGTCGACACAAC 57.347 39.130 19.50 6.17 0.00 3.32
375 376 7.773864 TTAAACACAATAAGAGTCGACACAA 57.226 32.000 19.50 4.39 0.00 3.33
376 377 7.654116 TGATTAAACACAATAAGAGTCGACACA 59.346 33.333 19.50 0.00 0.00 3.72
377 378 7.950496 GTGATTAAACACAATAAGAGTCGACAC 59.050 37.037 19.50 12.15 40.11 3.67
378 379 7.654116 TGTGATTAAACACAATAAGAGTCGACA 59.346 33.333 19.50 0.00 45.81 4.35
379 380 8.014322 TGTGATTAAACACAATAAGAGTCGAC 57.986 34.615 15.38 7.70 45.81 4.20
393 394 6.127479 GGGCAGATTATTGGTGTGATTAAACA 60.127 38.462 0.00 0.00 0.00 2.83
394 395 6.273071 GGGCAGATTATTGGTGTGATTAAAC 58.727 40.000 0.00 0.00 0.00 2.01
395 396 5.067153 CGGGCAGATTATTGGTGTGATTAAA 59.933 40.000 0.00 0.00 0.00 1.52
396 397 4.578516 CGGGCAGATTATTGGTGTGATTAA 59.421 41.667 0.00 0.00 0.00 1.40
397 398 4.133820 CGGGCAGATTATTGGTGTGATTA 58.866 43.478 0.00 0.00 0.00 1.75
398 399 2.951642 CGGGCAGATTATTGGTGTGATT 59.048 45.455 0.00 0.00 0.00 2.57
399 400 2.575532 CGGGCAGATTATTGGTGTGAT 58.424 47.619 0.00 0.00 0.00 3.06
400 401 1.408127 CCGGGCAGATTATTGGTGTGA 60.408 52.381 0.00 0.00 0.00 3.58
401 402 1.024271 CCGGGCAGATTATTGGTGTG 58.976 55.000 0.00 0.00 0.00 3.82
402 403 0.623723 ACCGGGCAGATTATTGGTGT 59.376 50.000 6.32 0.00 0.00 4.16
418 419 1.326548 GGCGCATCAGTAGTTTAACCG 59.673 52.381 10.83 0.00 0.00 4.44
419 420 2.608090 GAGGCGCATCAGTAGTTTAACC 59.392 50.000 18.55 0.00 0.00 2.85
427 428 2.472695 AGTTTTGAGGCGCATCAGTA 57.527 45.000 24.84 14.32 0.00 2.74
443 444 4.379302 AGATGCTTCTCCCTGAAAAGTT 57.621 40.909 0.00 0.00 33.79 2.66
446 447 3.878778 GCTAGATGCTTCTCCCTGAAAA 58.121 45.455 5.22 0.00 38.95 2.29
506 507 2.480419 GTGATGTTGAAGAACCACTCGG 59.520 50.000 0.00 0.00 38.77 4.63
508 509 4.212214 GTGAGTGATGTTGAAGAACCACTC 59.788 45.833 15.95 15.95 46.21 3.51
510 511 4.130118 AGTGAGTGATGTTGAAGAACCAC 58.870 43.478 0.00 0.00 0.00 4.16
523 524 3.505386 ACAGAGGTCTGAAGTGAGTGAT 58.495 45.455 13.99 0.00 46.59 3.06
527 528 5.461032 ACTAAACAGAGGTCTGAAGTGAG 57.539 43.478 13.99 4.02 46.59 3.51
529 530 6.049149 TGAAACTAAACAGAGGTCTGAAGTG 58.951 40.000 13.99 4.17 46.59 3.16
530 531 6.235231 TGAAACTAAACAGAGGTCTGAAGT 57.765 37.500 13.99 10.34 46.59 3.01
542 543 6.716628 AGATGAAGCTTGGATGAAACTAAACA 59.283 34.615 2.10 0.00 0.00 2.83
553 554 0.106318 GCCCCAGATGAAGCTTGGAT 60.106 55.000 2.10 0.00 0.00 3.41
556 557 1.136305 CAATGCCCCAGATGAAGCTTG 59.864 52.381 2.10 0.00 0.00 4.01
557 559 1.006281 TCAATGCCCCAGATGAAGCTT 59.994 47.619 0.00 0.00 0.00 3.74
558 560 0.627451 TCAATGCCCCAGATGAAGCT 59.373 50.000 0.00 0.00 0.00 3.74
567 569 1.425066 GGGTGATCTATCAATGCCCCA 59.575 52.381 10.16 0.00 38.55 4.96
568 570 1.272147 GGGGTGATCTATCAATGCCCC 60.272 57.143 16.41 16.41 46.94 5.80
571 573 1.611673 CCCGGGGTGATCTATCAATGC 60.612 57.143 14.71 0.00 38.75 3.56
588 590 0.738975 TGATTACAGACTCGAGCCCG 59.261 55.000 13.61 2.95 37.07 6.13
608 610 4.332828 GGTCTTAATAGGGCAACTGTTGT 58.667 43.478 20.57 5.02 32.37 3.32
610 612 3.332485 TGGGTCTTAATAGGGCAACTGTT 59.668 43.478 0.00 0.00 34.64 3.16
614 616 3.359695 TGTGGGTCTTAATAGGGCAAC 57.640 47.619 0.00 0.00 0.00 4.17
630 775 8.767478 ATATTTCTTTGATTTGCTCTTTGTGG 57.233 30.769 0.00 0.00 0.00 4.17
664 821 8.609176 TCACCACGCTATTATTATCTTTGTTTC 58.391 33.333 0.00 0.00 0.00 2.78
848 2324 2.455295 TCGTTTCGTTTCGTTTTGGG 57.545 45.000 0.00 0.00 0.00 4.12
934 2415 1.686052 GAGATGCCGAGATGGAGACTT 59.314 52.381 0.00 0.00 42.00 3.01
984 2469 2.851102 ATGGGAGGAGGCGGATGG 60.851 66.667 0.00 0.00 0.00 3.51
987 2472 3.083349 CACATGGGAGGAGGCGGA 61.083 66.667 0.00 0.00 0.00 5.54
2186 3681 2.417586 TCACACGGTACTGTATCAGACG 59.582 50.000 7.11 7.49 35.18 4.18
2254 3750 5.090652 AGTACGCAACACAACATTTACTG 57.909 39.130 0.00 0.00 0.00 2.74
2258 3754 5.744666 AGTAAGTACGCAACACAACATTT 57.255 34.783 0.00 0.00 0.00 2.32
2259 3755 5.744666 AAGTAAGTACGCAACACAACATT 57.255 34.783 0.00 0.00 0.00 2.71
2263 3765 5.353938 AGAGAAAGTAAGTACGCAACACAA 58.646 37.500 0.00 0.00 0.00 3.33
2288 3795 1.611006 TCTCCTCAGCATAGCTTAGCG 59.389 52.381 0.00 0.00 36.40 4.26
2350 3859 8.311650 AGTAAGCAGTACTGACATTTAACAAG 57.688 34.615 27.08 0.00 41.75 3.16
2362 3871 7.704472 ACTAGTACGTAGTAGTAAGCAGTACTG 59.296 40.741 32.17 18.93 46.71 2.74
2381 3890 9.513727 GCAGTAACATTTAACCTCTACTAGTAC 57.486 37.037 0.00 0.00 0.00 2.73
2392 3907 8.996271 AGTAACAGTAAGCAGTAACATTTAACC 58.004 33.333 0.00 0.00 0.00 2.85
2411 3926 9.930693 ATCTTTCTTAACTTCTACCAGTAACAG 57.069 33.333 0.00 0.00 0.00 3.16
2467 4005 0.177836 AAAACCCAGTGCAAAGTGCC 59.822 50.000 0.00 0.00 44.23 5.01
2489 4027 8.871862 CAACTGTGAACATTTTGAAGATGAAAA 58.128 29.630 2.46 0.00 0.00 2.29
2492 4030 7.332213 TCAACTGTGAACATTTTGAAGATGA 57.668 32.000 2.46 0.00 29.87 2.92
2493 4031 7.863877 TCATCAACTGTGAACATTTTGAAGATG 59.136 33.333 10.15 7.83 37.30 2.90
2494 4032 7.944061 TCATCAACTGTGAACATTTTGAAGAT 58.056 30.769 10.15 0.00 37.30 2.40
2511 4054 4.084287 ACCATTCAACTGCATCATCAACT 58.916 39.130 0.00 0.00 0.00 3.16
2648 4194 2.047274 TCCACAAGTAGCTGCCGC 60.047 61.111 0.00 0.00 0.00 6.53
2649 4195 2.103042 GCTCCACAAGTAGCTGCCG 61.103 63.158 0.00 0.00 35.80 5.69
2650 4196 3.896479 GCTCCACAAGTAGCTGCC 58.104 61.111 0.00 0.00 35.80 4.85
2676 4222 0.249489 CCGTAAGATCTCGGCAAGGG 60.249 60.000 9.67 0.00 40.28 3.95
2844 4409 3.078837 ACGGCCACTTTACTTTACCATG 58.921 45.455 2.24 0.00 0.00 3.66
2870 4435 5.936956 GGCCAATCAGATCTTATTAGTCCTG 59.063 44.000 0.00 0.00 0.00 3.86
2899 4464 9.606631 AATGAATGATCTCTGAAGTTAAGTACC 57.393 33.333 0.00 0.00 0.00 3.34
2958 4530 2.117423 CAAGGAAACCCCGGCCTT 59.883 61.111 0.00 4.60 42.52 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.