Multiple sequence alignment - TraesCS3D01G342500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G342500 chr3D 100.000 2658 0 0 1 2658 455041526 455044183 0.000000e+00 4909
1 TraesCS3D01G342500 chr3D 87.243 682 55 10 964 1632 455011454 455012116 0.000000e+00 749
2 TraesCS3D01G342500 chr3D 76.674 463 106 2 7 468 427783428 427782967 3.400000e-64 255
3 TraesCS3D01G342500 chr3D 93.662 142 8 1 1628 1769 455012870 455013010 7.450000e-51 211
4 TraesCS3D01G342500 chr3A 92.383 1024 67 7 1628 2644 597268416 597269435 0.000000e+00 1448
5 TraesCS3D01G342500 chr3A 86.842 456 50 2 964 1418 597266859 597267305 3.950000e-138 501
6 TraesCS3D01G342500 chr3A 87.864 206 19 3 1433 1632 597267471 597267676 1.230000e-58 237
7 TraesCS3D01G342500 chr3A 74.735 471 116 3 7 476 681631635 681632103 9.640000e-50 207
8 TraesCS3D01G342500 chr3B 89.723 973 52 12 692 1633 598116190 598117145 0.000000e+00 1199
9 TraesCS3D01G342500 chr3B 94.518 602 25 5 1628 2222 598117867 598118467 0.000000e+00 922
10 TraesCS3D01G342500 chr3B 87.001 677 58 10 964 1632 598111201 598111855 0.000000e+00 736
11 TraesCS3D01G342500 chr3B 92.447 331 21 3 2317 2644 598118658 598118987 1.110000e-128 470
12 TraesCS3D01G342500 chr3B 94.366 142 7 1 1628 1769 598112599 598112739 1.600000e-52 217
13 TraesCS3D01G342500 chr3B 71.429 413 110 6 7 414 172061093 172060684 4.680000e-18 102
14 TraesCS3D01G342500 chr4A 81.391 532 96 3 11 541 521060219 521060748 5.260000e-117 431
15 TraesCS3D01G342500 chr1A 77.491 542 116 6 4 542 279346767 279346229 1.190000e-83 320
16 TraesCS3D01G342500 chr1A 74.844 481 104 10 2 480 167164075 167164540 4.490000e-48 202
17 TraesCS3D01G342500 chr1A 73.896 498 120 10 14 506 313695002 313695494 9.710000e-45 191
18 TraesCS3D01G342500 chr5B 76.864 523 117 4 2 522 631829490 631830010 2.590000e-75 292
19 TraesCS3D01G342500 chr5A 77.966 472 99 5 4 472 359745020 359745489 9.310000e-75 291
20 TraesCS3D01G342500 chr6A 76.311 515 114 7 14 524 493750690 493750180 4.360000e-68 268
21 TraesCS3D01G342500 chr7D 78.042 337 71 3 4 338 127016046 127015711 2.680000e-50 209
22 TraesCS3D01G342500 chr6D 78.333 300 65 0 1 300 47378345 47378046 7.510000e-46 195
23 TraesCS3D01G342500 chr1B 78.169 284 62 0 14 297 169972966 169973249 5.840000e-42 182


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G342500 chr3D 455041526 455044183 2657 False 4909.000000 4909 100.000000 1 2658 1 chr3D.!!$F1 2657
1 TraesCS3D01G342500 chr3D 455011454 455013010 1556 False 480.000000 749 90.452500 964 1769 2 chr3D.!!$F2 805
2 TraesCS3D01G342500 chr3A 597266859 597269435 2576 False 728.666667 1448 89.029667 964 2644 3 chr3A.!!$F2 1680
3 TraesCS3D01G342500 chr3B 598111201 598118987 7786 False 708.800000 1199 91.611000 692 2644 5 chr3B.!!$F1 1952
4 TraesCS3D01G342500 chr4A 521060219 521060748 529 False 431.000000 431 81.391000 11 541 1 chr4A.!!$F1 530
5 TraesCS3D01G342500 chr1A 279346229 279346767 538 True 320.000000 320 77.491000 4 542 1 chr1A.!!$R1 538
6 TraesCS3D01G342500 chr5B 631829490 631830010 520 False 292.000000 292 76.864000 2 522 1 chr5B.!!$F1 520
7 TraesCS3D01G342500 chr6A 493750180 493750690 510 True 268.000000 268 76.311000 14 524 1 chr6A.!!$R1 510

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
449 450 0.030369 AGGTTCGTGATATCGACCGC 59.970 55.0 0.0 0.0 39.58 5.68 F
909 910 0.032952 TCACTGTCTTACGGCACACC 59.967 55.0 0.0 0.0 0.00 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1421 1429 0.447801 GCGGCAATGGAGTTACTGTG 59.552 55.0 0.0 0.0 0.0 3.66 R
2465 8799 0.804989 CTTCAGGTCACGGGATTTGC 59.195 55.0 0.0 0.0 0.0 3.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 8.924511 CCATATGGTATTTCTGTTTATCACCT 57.075 34.615 14.09 0.00 0.00 4.00
44 45 5.585047 GGTATTTCTGTTTATCACCTTCGCT 59.415 40.000 0.00 0.00 0.00 4.93
54 55 2.034066 CCTTCGCTGGCCCAGAAA 59.966 61.111 16.85 6.88 32.44 2.52
70 71 3.836151 AAAAACGCGCCTGGACTT 58.164 50.000 5.73 0.00 0.00 3.01
87 88 1.003580 ACTTTGCCGATCTCATGGTGT 59.996 47.619 0.00 0.00 0.00 4.16
140 141 6.114767 TGATGAACATGAGCAAGCTATACAA 58.885 36.000 0.00 0.00 0.00 2.41
144 145 5.102953 ACATGAGCAAGCTATACAAGGAA 57.897 39.130 0.00 0.00 0.00 3.36
145 146 5.500234 ACATGAGCAAGCTATACAAGGAAA 58.500 37.500 0.00 0.00 0.00 3.13
175 176 2.894240 GATCGTCCGTGCCGCCTTAA 62.894 60.000 0.00 0.00 0.00 1.85
186 187 1.017387 CCGCCTTAAACAGCCATCTC 58.983 55.000 0.00 0.00 0.00 2.75
303 304 0.476808 TGGTGGGGAAGGAGCCTAAA 60.477 55.000 0.00 0.00 0.00 1.85
309 310 1.633945 GGGAAGGAGCCTAAAGGACAA 59.366 52.381 0.00 0.00 37.39 3.18
323 324 4.618920 AAGGACAATTGAGTCGGTTAGT 57.381 40.909 13.59 0.00 39.42 2.24
341 342 1.064314 AGTGATACTCTGGCTCTCGGT 60.064 52.381 0.00 0.00 0.00 4.69
342 343 1.751924 GTGATACTCTGGCTCTCGGTT 59.248 52.381 0.00 0.00 0.00 4.44
366 367 1.765314 GAGTAGCCCATCACCATCACT 59.235 52.381 0.00 0.00 0.00 3.41
373 374 1.405933 CCATCACCATCACTTCGCTCA 60.406 52.381 0.00 0.00 0.00 4.26
374 375 2.349590 CATCACCATCACTTCGCTCAA 58.650 47.619 0.00 0.00 0.00 3.02
390 391 6.474819 TCGCTCAAATCGAAGTTGATTTTA 57.525 33.333 13.48 0.00 44.08 1.52
396 397 7.295201 TCAAATCGAAGTTGATTTTAAGACCG 58.705 34.615 10.05 0.00 44.08 4.79
402 403 6.348213 CGAAGTTGATTTTAAGACCGGACATT 60.348 38.462 9.46 1.59 0.00 2.71
429 430 4.726825 TGGAAGCATAATAGGAGGGACTTT 59.273 41.667 0.00 0.00 41.55 2.66
431 432 6.043243 TGGAAGCATAATAGGAGGGACTTTAG 59.957 42.308 0.00 0.00 41.55 1.85
432 433 6.441088 AAGCATAATAGGAGGGACTTTAGG 57.559 41.667 0.00 0.00 41.55 2.69
441 442 3.703052 GGAGGGACTTTAGGTTCGTGATA 59.297 47.826 0.00 0.00 41.55 2.15
444 445 4.037684 AGGGACTTTAGGTTCGTGATATCG 59.962 45.833 0.00 0.00 27.25 2.92
445 446 4.037208 GGGACTTTAGGTTCGTGATATCGA 59.963 45.833 0.00 0.00 38.08 3.59
446 447 4.974888 GGACTTTAGGTTCGTGATATCGAC 59.025 45.833 0.00 0.00 39.58 4.20
449 450 0.030369 AGGTTCGTGATATCGACCGC 59.970 55.000 0.00 0.00 39.58 5.68
452 453 1.438562 TTCGTGATATCGACCGCGGA 61.439 55.000 35.90 10.61 39.58 5.54
453 454 1.440518 CGTGATATCGACCGCGGAG 60.441 63.158 35.90 24.86 38.28 4.63
481 482 3.092334 CCATGATAATGGTGTCGTCGA 57.908 47.619 0.04 0.00 36.95 4.20
482 483 2.794910 CCATGATAATGGTGTCGTCGAC 59.205 50.000 18.51 18.51 36.95 4.20
483 484 3.443976 CATGATAATGGTGTCGTCGACA 58.556 45.455 23.70 23.70 40.50 4.35
489 490 0.109458 TGGTGTCGTCGACATACTGC 60.109 55.000 29.19 16.40 44.63 4.40
492 493 0.170339 TGTCGTCGACATACTGCAGG 59.830 55.000 23.70 2.38 37.67 4.85
495 496 0.248661 CGTCGACATACTGCAGGAGG 60.249 60.000 19.93 14.98 0.00 4.30
496 497 0.103208 GTCGACATACTGCAGGAGGG 59.897 60.000 19.93 8.85 0.00 4.30
507 508 0.329596 GCAGGAGGGAGACACCATTT 59.670 55.000 0.00 0.00 41.20 2.32
510 511 0.107654 GGAGGGAGACACCATTTCCG 60.108 60.000 0.00 0.00 41.20 4.30
511 512 0.613777 GAGGGAGACACCATTTCCGT 59.386 55.000 0.00 0.00 41.20 4.69
522 523 1.303317 ATTTCCGTCCACCAGGTGC 60.303 57.895 14.98 0.15 35.89 5.01
523 524 3.818121 TTTCCGTCCACCAGGTGCG 62.818 63.158 14.98 13.02 35.89 5.34
529 530 4.015406 CCACCAGGTGCGGCACTA 62.015 66.667 29.92 0.00 34.40 2.74
530 531 2.268920 CACCAGGTGCGGCACTAT 59.731 61.111 29.92 17.65 34.40 2.12
531 532 2.108514 CACCAGGTGCGGCACTATG 61.109 63.158 29.92 26.03 34.40 2.23
532 533 3.204827 CCAGGTGCGGCACTATGC 61.205 66.667 29.92 15.07 44.08 3.14
533 534 2.124983 CAGGTGCGGCACTATGCT 60.125 61.111 29.92 17.03 44.28 3.79
539 540 4.863707 CGGCACTATGCTGTGGAT 57.136 55.556 1.29 0.00 44.43 3.41
540 541 2.314256 CGGCACTATGCTGTGGATG 58.686 57.895 1.29 0.00 44.43 3.51
541 542 0.179076 CGGCACTATGCTGTGGATGA 60.179 55.000 1.29 0.00 44.43 2.92
542 543 1.303309 GGCACTATGCTGTGGATGAC 58.697 55.000 0.13 0.00 44.28 3.06
543 544 1.407299 GGCACTATGCTGTGGATGACA 60.407 52.381 0.13 0.00 44.28 3.58
544 545 2.358957 GCACTATGCTGTGGATGACAA 58.641 47.619 7.07 0.00 40.96 3.18
545 546 2.749076 GCACTATGCTGTGGATGACAAA 59.251 45.455 7.07 0.00 40.96 2.83
546 547 3.191162 GCACTATGCTGTGGATGACAAAA 59.809 43.478 7.07 0.00 40.96 2.44
547 548 4.673580 GCACTATGCTGTGGATGACAAAAG 60.674 45.833 7.07 0.00 40.96 2.27
548 549 4.696877 CACTATGCTGTGGATGACAAAAGA 59.303 41.667 0.00 0.00 32.80 2.52
549 550 5.356190 CACTATGCTGTGGATGACAAAAGAT 59.644 40.000 0.00 0.00 32.80 2.40
550 551 4.713824 ATGCTGTGGATGACAAAAGATG 57.286 40.909 0.00 0.00 32.80 2.90
551 552 3.753815 TGCTGTGGATGACAAAAGATGA 58.246 40.909 0.00 0.00 32.80 2.92
552 553 3.503363 TGCTGTGGATGACAAAAGATGAC 59.497 43.478 0.00 0.00 32.80 3.06
553 554 3.503363 GCTGTGGATGACAAAAGATGACA 59.497 43.478 0.00 0.00 38.07 3.58
554 555 4.022935 GCTGTGGATGACAAAAGATGACAA 60.023 41.667 0.00 0.00 37.26 3.18
555 556 5.507817 GCTGTGGATGACAAAAGATGACAAA 60.508 40.000 0.00 0.00 37.26 2.83
556 557 6.462552 TGTGGATGACAAAAGATGACAAAA 57.537 33.333 0.00 0.00 37.26 2.44
557 558 6.506147 TGTGGATGACAAAAGATGACAAAAG 58.494 36.000 0.00 0.00 37.26 2.27
558 559 6.320926 TGTGGATGACAAAAGATGACAAAAGA 59.679 34.615 0.00 0.00 37.26 2.52
559 560 7.014518 TGTGGATGACAAAAGATGACAAAAGAT 59.985 33.333 0.00 0.00 37.26 2.40
560 561 7.869429 GTGGATGACAAAAGATGACAAAAGATT 59.131 33.333 0.00 0.00 37.26 2.40
561 562 8.423349 TGGATGACAAAAGATGACAAAAGATTT 58.577 29.630 0.00 0.00 37.26 2.17
562 563 9.264719 GGATGACAAAAGATGACAAAAGATTTT 57.735 29.630 0.00 0.00 37.26 1.82
564 565 9.820725 ATGACAAAAGATGACAAAAGATTTTCA 57.179 25.926 0.00 0.00 37.26 2.69
565 566 9.304731 TGACAAAAGATGACAAAAGATTTTCAG 57.695 29.630 0.00 0.00 29.35 3.02
566 567 9.520204 GACAAAAGATGACAAAAGATTTTCAGA 57.480 29.630 0.00 0.00 29.35 3.27
569 570 8.961294 AAAGATGACAAAAGATTTTCAGATCG 57.039 30.769 0.00 0.00 29.35 3.69
570 571 6.549952 AGATGACAAAAGATTTTCAGATCGC 58.450 36.000 0.00 0.00 29.35 4.58
571 572 5.687770 TGACAAAAGATTTTCAGATCGCA 57.312 34.783 0.00 0.00 0.00 5.10
572 573 5.451908 TGACAAAAGATTTTCAGATCGCAC 58.548 37.500 0.00 0.00 0.00 5.34
573 574 5.239306 TGACAAAAGATTTTCAGATCGCACT 59.761 36.000 0.00 0.00 0.00 4.40
574 575 6.426633 TGACAAAAGATTTTCAGATCGCACTA 59.573 34.615 0.00 0.00 0.00 2.74
575 576 7.041440 TGACAAAAGATTTTCAGATCGCACTAA 60.041 33.333 0.00 0.00 0.00 2.24
576 577 7.820648 ACAAAAGATTTTCAGATCGCACTAAT 58.179 30.769 0.00 0.00 0.00 1.73
577 578 7.752239 ACAAAAGATTTTCAGATCGCACTAATG 59.248 33.333 0.00 0.00 0.00 1.90
578 579 5.998454 AGATTTTCAGATCGCACTAATGG 57.002 39.130 0.00 0.00 0.00 3.16
579 580 4.818546 AGATTTTCAGATCGCACTAATGGG 59.181 41.667 0.00 0.00 40.10 4.00
580 581 2.620251 TTCAGATCGCACTAATGGGG 57.380 50.000 0.00 0.00 39.24 4.96
581 582 1.788229 TCAGATCGCACTAATGGGGA 58.212 50.000 0.00 0.00 39.24 4.81
582 583 2.329267 TCAGATCGCACTAATGGGGAT 58.671 47.619 0.00 0.00 40.19 3.85
584 585 2.100605 GATCGCACTAATGGGGATCC 57.899 55.000 1.92 1.92 44.43 3.36
585 586 1.625818 GATCGCACTAATGGGGATCCT 59.374 52.381 12.58 0.00 44.43 3.24
586 587 1.048601 TCGCACTAATGGGGATCCTC 58.951 55.000 12.58 8.60 39.24 3.71
587 588 0.758734 CGCACTAATGGGGATCCTCA 59.241 55.000 18.95 18.95 35.16 3.86
588 589 1.541233 CGCACTAATGGGGATCCTCAC 60.541 57.143 19.06 1.38 35.16 3.51
589 590 1.490490 GCACTAATGGGGATCCTCACA 59.510 52.381 19.06 11.61 0.00 3.58
590 591 2.092429 GCACTAATGGGGATCCTCACAA 60.092 50.000 19.06 7.05 0.00 3.33
591 592 3.813443 CACTAATGGGGATCCTCACAAG 58.187 50.000 19.06 19.18 0.00 3.16
592 593 2.780010 ACTAATGGGGATCCTCACAAGG 59.220 50.000 19.06 10.16 44.89 3.61
603 604 3.641434 CCTCACAAGGATCCTCACAAT 57.359 47.619 16.52 0.00 46.67 2.71
604 605 3.960571 CCTCACAAGGATCCTCACAATT 58.039 45.455 16.52 0.00 46.67 2.32
605 606 3.693085 CCTCACAAGGATCCTCACAATTG 59.307 47.826 16.52 11.11 46.67 2.32
606 607 4.566278 CCTCACAAGGATCCTCACAATTGA 60.566 45.833 16.52 10.16 46.67 2.57
607 608 6.374352 CCTCACAAGGATCCTCACAATTGAG 61.374 48.000 16.52 17.83 46.67 3.02
608 609 8.707338 CCTCACAAGGATCCTCACAATTGAGT 62.707 46.154 16.52 0.25 45.54 3.41
609 610 9.419593 CCTCACAAGGATCCTCACAATTGAGTA 62.420 44.444 16.52 0.00 45.54 2.59
614 615 7.555554 CAAGGATCCTCACAATTGAGTATTCTT 59.444 37.037 16.52 7.67 42.22 2.52
615 616 8.772250 AAGGATCCTCACAATTGAGTATTCTTA 58.228 33.333 16.52 0.00 40.56 2.10
621 622 8.341477 CTCACAATTGAGTATTCTTAGTACCG 57.659 38.462 13.59 0.00 43.95 4.02
622 623 7.833786 TCACAATTGAGTATTCTTAGTACCGT 58.166 34.615 13.59 0.00 0.00 4.83
623 624 7.972277 TCACAATTGAGTATTCTTAGTACCGTC 59.028 37.037 13.59 0.00 0.00 4.79
624 625 7.758076 CACAATTGAGTATTCTTAGTACCGTCA 59.242 37.037 13.59 0.00 0.00 4.35
625 626 8.475639 ACAATTGAGTATTCTTAGTACCGTCAT 58.524 33.333 13.59 0.00 0.00 3.06
626 627 9.961265 CAATTGAGTATTCTTAGTACCGTCATA 57.039 33.333 0.00 0.00 0.00 2.15
628 629 8.969260 TTGAGTATTCTTAGTACCGTCATAGA 57.031 34.615 0.00 0.00 0.00 1.98
629 630 9.570468 TTGAGTATTCTTAGTACCGTCATAGAT 57.430 33.333 0.00 0.00 0.00 1.98
630 631 9.000486 TGAGTATTCTTAGTACCGTCATAGATG 58.000 37.037 0.00 0.00 0.00 2.90
631 632 9.217278 GAGTATTCTTAGTACCGTCATAGATGA 57.783 37.037 0.00 0.00 0.00 2.92
632 633 9.742144 AGTATTCTTAGTACCGTCATAGATGAT 57.258 33.333 0.00 0.00 39.30 2.45
641 642 8.861086 AGTACCGTCATAGATGATAAAAGATGT 58.139 33.333 0.00 0.00 39.30 3.06
642 643 9.477484 GTACCGTCATAGATGATAAAAGATGTT 57.523 33.333 0.00 0.00 39.30 2.71
643 644 8.594881 ACCGTCATAGATGATAAAAGATGTTC 57.405 34.615 0.00 0.00 39.30 3.18
644 645 8.204160 ACCGTCATAGATGATAAAAGATGTTCA 58.796 33.333 0.00 0.00 39.30 3.18
645 646 8.706936 CCGTCATAGATGATAAAAGATGTTCAG 58.293 37.037 0.00 0.00 39.30 3.02
646 647 9.468532 CGTCATAGATGATAAAAGATGTTCAGA 57.531 33.333 0.00 0.00 39.30 3.27
652 653 9.160496 AGATGATAAAAGATGTTCAGACTGTTC 57.840 33.333 1.59 0.00 0.00 3.18
653 654 9.160496 GATGATAAAAGATGTTCAGACTGTTCT 57.840 33.333 1.59 0.00 0.00 3.01
670 671 3.343941 TTCTGTCCGAACATTTAGGGG 57.656 47.619 0.00 0.00 34.13 4.79
671 672 1.557832 TCTGTCCGAACATTTAGGGGG 59.442 52.381 0.00 0.00 34.13 5.40
685 686 4.434483 GGGGGTGATTTGGTGACC 57.566 61.111 0.00 0.00 32.62 4.02
690 691 1.534729 GGTGATTTGGTGACCCTCAC 58.465 55.000 16.27 16.27 46.23 3.51
699 700 1.726853 GTGACCCTCACAAGAATCCG 58.273 55.000 0.00 0.00 46.22 4.18
700 701 1.275291 GTGACCCTCACAAGAATCCGA 59.725 52.381 0.00 0.00 46.22 4.55
701 702 1.275291 TGACCCTCACAAGAATCCGAC 59.725 52.381 0.00 0.00 0.00 4.79
702 703 0.246635 ACCCTCACAAGAATCCGACG 59.753 55.000 0.00 0.00 0.00 5.12
703 704 1.084370 CCCTCACAAGAATCCGACGC 61.084 60.000 0.00 0.00 0.00 5.19
704 705 0.108615 CCTCACAAGAATCCGACGCT 60.109 55.000 0.00 0.00 0.00 5.07
705 706 1.272781 CTCACAAGAATCCGACGCTC 58.727 55.000 0.00 0.00 0.00 5.03
706 707 0.456142 TCACAAGAATCCGACGCTCG 60.456 55.000 0.00 1.17 40.07 5.03
715 716 4.253257 CGACGCTCGGACTAGGGC 62.253 72.222 0.00 0.00 36.00 5.19
716 717 2.829458 GACGCTCGGACTAGGGCT 60.829 66.667 0.00 0.00 34.93 5.19
717 718 3.127352 GACGCTCGGACTAGGGCTG 62.127 68.421 0.00 0.00 34.93 4.85
718 719 4.577246 CGCTCGGACTAGGGCTGC 62.577 72.222 0.00 0.00 34.93 5.25
719 720 4.228567 GCTCGGACTAGGGCTGCC 62.229 72.222 11.05 11.05 34.10 4.85
720 721 3.541713 CTCGGACTAGGGCTGCCC 61.542 72.222 30.57 30.57 45.90 5.36
733 734 4.324471 TGCCCTTGCAGCATACTG 57.676 55.556 0.00 0.00 44.23 2.74
734 735 1.379916 TGCCCTTGCAGCATACTGT 59.620 52.632 0.00 0.00 46.30 3.55
735 736 0.617935 TGCCCTTGCAGCATACTGTA 59.382 50.000 0.00 0.00 46.30 2.74
736 737 1.212688 TGCCCTTGCAGCATACTGTAT 59.787 47.619 0.00 0.00 46.30 2.29
737 738 1.605710 GCCCTTGCAGCATACTGTATG 59.394 52.381 20.74 20.74 46.30 2.39
750 751 2.775890 ACTGTATGCTGCATAGATGGC 58.224 47.619 21.86 10.81 0.00 4.40
751 752 2.105306 ACTGTATGCTGCATAGATGGCA 59.895 45.455 21.86 14.49 39.32 4.92
752 753 2.483106 CTGTATGCTGCATAGATGGCAC 59.517 50.000 21.86 11.88 37.52 5.01
767 768 3.266510 TGGCACAATCTACTTGGCTAG 57.733 47.619 0.00 0.00 39.30 3.42
768 769 2.837591 TGGCACAATCTACTTGGCTAGA 59.162 45.455 2.20 0.00 39.30 2.43
769 770 3.118629 TGGCACAATCTACTTGGCTAGAG 60.119 47.826 2.20 0.00 39.30 2.43
770 771 3.462021 GCACAATCTACTTGGCTAGAGG 58.538 50.000 2.20 0.00 39.30 3.69
771 772 3.118592 GCACAATCTACTTGGCTAGAGGT 60.119 47.826 2.20 0.00 39.30 3.85
772 773 4.688021 CACAATCTACTTGGCTAGAGGTC 58.312 47.826 2.20 0.00 39.30 3.85
773 774 4.160439 CACAATCTACTTGGCTAGAGGTCA 59.840 45.833 2.20 0.00 39.30 4.02
774 775 4.965532 ACAATCTACTTGGCTAGAGGTCAT 59.034 41.667 2.20 0.00 39.30 3.06
775 776 6.040955 CACAATCTACTTGGCTAGAGGTCATA 59.959 42.308 2.20 0.00 39.30 2.15
776 777 6.266558 ACAATCTACTTGGCTAGAGGTCATAG 59.733 42.308 2.20 0.00 39.30 2.23
777 778 5.390087 TCTACTTGGCTAGAGGTCATAGT 57.610 43.478 2.20 0.00 0.00 2.12
778 779 5.133941 TCTACTTGGCTAGAGGTCATAGTG 58.866 45.833 2.20 0.00 0.00 2.74
779 780 3.034635 ACTTGGCTAGAGGTCATAGTGG 58.965 50.000 2.20 0.00 0.00 4.00
780 781 2.088104 TGGCTAGAGGTCATAGTGGG 57.912 55.000 0.00 0.00 0.00 4.61
781 782 0.682292 GGCTAGAGGTCATAGTGGGC 59.318 60.000 0.00 0.00 0.00 5.36
782 783 0.682292 GCTAGAGGTCATAGTGGGCC 59.318 60.000 0.00 0.00 0.00 5.80
783 784 2.034799 GCTAGAGGTCATAGTGGGCCA 61.035 57.143 0.00 0.00 0.00 5.36
784 785 2.614259 CTAGAGGTCATAGTGGGCCAT 58.386 52.381 10.70 1.02 0.00 4.40
785 786 1.898863 AGAGGTCATAGTGGGCCATT 58.101 50.000 10.70 8.55 0.00 3.16
786 787 3.060479 AGAGGTCATAGTGGGCCATTA 57.940 47.619 10.70 11.14 0.00 1.90
787 788 3.602608 AGAGGTCATAGTGGGCCATTAT 58.397 45.455 15.21 15.21 0.00 1.28
788 789 3.584848 AGAGGTCATAGTGGGCCATTATC 59.415 47.826 17.78 8.31 0.00 1.75
789 790 2.644798 AGGTCATAGTGGGCCATTATCC 59.355 50.000 17.78 16.31 0.00 2.59
790 791 2.644798 GGTCATAGTGGGCCATTATCCT 59.355 50.000 17.78 8.62 0.00 3.24
791 792 3.074538 GGTCATAGTGGGCCATTATCCTT 59.925 47.826 17.78 0.00 0.00 3.36
792 793 4.288626 GGTCATAGTGGGCCATTATCCTTA 59.711 45.833 17.78 2.83 0.00 2.69
793 794 5.044846 GGTCATAGTGGGCCATTATCCTTAT 60.045 44.000 17.78 0.00 0.00 1.73
794 795 6.157994 GGTCATAGTGGGCCATTATCCTTATA 59.842 42.308 17.78 0.00 0.00 0.98
795 796 7.275920 GTCATAGTGGGCCATTATCCTTATAG 58.724 42.308 17.78 6.31 0.00 1.31
796 797 4.576330 AGTGGGCCATTATCCTTATAGC 57.424 45.455 10.70 0.00 0.00 2.97
797 798 3.055094 AGTGGGCCATTATCCTTATAGCG 60.055 47.826 10.70 0.00 0.00 4.26
798 799 3.055385 GTGGGCCATTATCCTTATAGCGA 60.055 47.826 10.70 0.00 0.00 4.93
799 800 3.055385 TGGGCCATTATCCTTATAGCGAC 60.055 47.826 0.00 0.00 0.00 5.19
800 801 3.532542 GGCCATTATCCTTATAGCGACC 58.467 50.000 0.00 0.00 0.00 4.79
801 802 3.197983 GGCCATTATCCTTATAGCGACCT 59.802 47.826 0.00 0.00 0.00 3.85
802 803 4.184629 GCCATTATCCTTATAGCGACCTG 58.815 47.826 0.00 0.00 0.00 4.00
803 804 4.081642 GCCATTATCCTTATAGCGACCTGA 60.082 45.833 0.00 0.00 0.00 3.86
804 805 5.568825 GCCATTATCCTTATAGCGACCTGAA 60.569 44.000 0.00 0.00 0.00 3.02
805 806 6.464222 CCATTATCCTTATAGCGACCTGAAA 58.536 40.000 0.00 0.00 0.00 2.69
806 807 7.106239 CCATTATCCTTATAGCGACCTGAAAT 58.894 38.462 0.00 0.00 0.00 2.17
807 808 8.258007 CCATTATCCTTATAGCGACCTGAAATA 58.742 37.037 0.00 0.00 0.00 1.40
808 809 9.653287 CATTATCCTTATAGCGACCTGAAATAA 57.347 33.333 0.00 0.00 0.00 1.40
810 811 9.653287 TTATCCTTATAGCGACCTGAAATAATG 57.347 33.333 0.00 0.00 0.00 1.90
811 812 6.464222 TCCTTATAGCGACCTGAAATAATGG 58.536 40.000 0.00 0.00 0.00 3.16
812 813 6.042781 TCCTTATAGCGACCTGAAATAATGGT 59.957 38.462 0.00 0.00 36.70 3.55
813 814 6.147821 CCTTATAGCGACCTGAAATAATGGTG 59.852 42.308 0.00 0.00 33.74 4.17
814 815 2.643551 AGCGACCTGAAATAATGGTGG 58.356 47.619 0.00 0.00 33.74 4.61
815 816 2.026262 AGCGACCTGAAATAATGGTGGT 60.026 45.455 0.00 0.00 33.74 4.16
816 817 2.354821 GCGACCTGAAATAATGGTGGTC 59.645 50.000 0.00 0.00 40.16 4.02
817 818 3.605634 CGACCTGAAATAATGGTGGTCA 58.394 45.455 10.05 0.00 42.74 4.02
818 819 4.199310 CGACCTGAAATAATGGTGGTCAT 58.801 43.478 10.05 0.00 42.74 3.06
819 820 4.035558 CGACCTGAAATAATGGTGGTCATG 59.964 45.833 10.05 0.00 42.74 3.07
820 821 4.280819 ACCTGAAATAATGGTGGTCATGG 58.719 43.478 0.00 0.00 35.99 3.66
821 822 3.638160 CCTGAAATAATGGTGGTCATGGG 59.362 47.826 0.00 0.00 35.99 4.00
822 823 3.638160 CTGAAATAATGGTGGTCATGGGG 59.362 47.826 0.00 0.00 35.99 4.96
823 824 3.012274 TGAAATAATGGTGGTCATGGGGT 59.988 43.478 0.00 0.00 35.99 4.95
824 825 2.754012 ATAATGGTGGTCATGGGGTG 57.246 50.000 0.00 0.00 35.99 4.61
825 826 1.675007 TAATGGTGGTCATGGGGTGA 58.325 50.000 0.00 0.00 35.99 4.02
826 827 0.783206 AATGGTGGTCATGGGGTGAA 59.217 50.000 0.00 0.00 38.90 3.18
827 828 1.009997 ATGGTGGTCATGGGGTGAAT 58.990 50.000 0.00 0.00 38.90 2.57
828 829 0.039472 TGGTGGTCATGGGGTGAATG 59.961 55.000 0.00 0.00 38.90 2.67
829 830 0.039618 GGTGGTCATGGGGTGAATGT 59.960 55.000 0.00 0.00 38.90 2.71
830 831 1.176527 GTGGTCATGGGGTGAATGTG 58.823 55.000 0.00 0.00 38.90 3.21
831 832 1.071434 TGGTCATGGGGTGAATGTGA 58.929 50.000 0.00 0.00 38.90 3.58
832 833 1.426983 TGGTCATGGGGTGAATGTGAA 59.573 47.619 0.00 0.00 38.90 3.18
833 834 2.042842 TGGTCATGGGGTGAATGTGAAT 59.957 45.455 0.00 0.00 38.90 2.57
834 835 3.099141 GGTCATGGGGTGAATGTGAATT 58.901 45.455 0.00 0.00 38.90 2.17
835 836 3.131046 GGTCATGGGGTGAATGTGAATTC 59.869 47.826 0.00 0.00 38.90 2.17
836 837 4.019174 GTCATGGGGTGAATGTGAATTCT 58.981 43.478 7.05 0.00 38.90 2.40
837 838 4.463891 GTCATGGGGTGAATGTGAATTCTT 59.536 41.667 7.05 0.00 38.90 2.52
838 839 4.706476 TCATGGGGTGAATGTGAATTCTTC 59.294 41.667 7.05 3.14 32.78 2.87
839 840 3.430453 TGGGGTGAATGTGAATTCTTCC 58.570 45.455 7.05 0.00 0.00 3.46
840 841 2.760650 GGGGTGAATGTGAATTCTTCCC 59.239 50.000 7.05 16.53 40.74 3.97
841 842 2.760650 GGGTGAATGTGAATTCTTCCCC 59.239 50.000 7.05 10.64 38.33 4.81
842 843 2.423538 GGTGAATGTGAATTCTTCCCCG 59.576 50.000 7.05 0.00 0.00 5.73
843 844 2.423538 GTGAATGTGAATTCTTCCCCGG 59.576 50.000 7.05 0.00 0.00 5.73
844 845 2.024414 GAATGTGAATTCTTCCCCGGG 58.976 52.381 15.80 15.80 0.00 5.73
845 846 1.295020 ATGTGAATTCTTCCCCGGGA 58.705 50.000 26.32 0.34 0.00 5.14
846 847 0.618458 TGTGAATTCTTCCCCGGGAG 59.382 55.000 26.32 13.37 31.21 4.30
847 848 0.909623 GTGAATTCTTCCCCGGGAGA 59.090 55.000 26.32 16.00 31.21 3.71
848 849 1.280998 GTGAATTCTTCCCCGGGAGAA 59.719 52.381 26.32 24.30 31.21 2.87
849 850 2.092375 GTGAATTCTTCCCCGGGAGAAT 60.092 50.000 24.97 24.97 33.97 2.40
850 851 2.092429 TGAATTCTTCCCCGGGAGAATG 60.092 50.000 29.00 19.40 33.37 2.67
851 852 0.183731 ATTCTTCCCCGGGAGAATGC 59.816 55.000 28.18 0.00 32.55 3.56
852 853 1.921869 TTCTTCCCCGGGAGAATGCC 61.922 60.000 26.32 0.00 46.96 4.40
861 862 2.851805 GGGAGAATGCCGACAAATTC 57.148 50.000 0.00 0.00 36.28 2.17
862 863 2.369394 GGGAGAATGCCGACAAATTCT 58.631 47.619 0.00 0.00 44.01 2.40
863 864 2.755103 GGGAGAATGCCGACAAATTCTT 59.245 45.455 0.00 0.00 41.96 2.52
864 865 3.193479 GGGAGAATGCCGACAAATTCTTT 59.807 43.478 0.00 0.00 41.96 2.52
865 866 4.168760 GGAGAATGCCGACAAATTCTTTG 58.831 43.478 0.00 0.00 41.96 2.77
866 867 4.168760 GAGAATGCCGACAAATTCTTTGG 58.831 43.478 4.77 0.00 41.96 3.28
867 868 2.368655 ATGCCGACAAATTCTTTGGC 57.631 45.000 9.67 9.67 45.32 4.52
873 874 3.363341 GACAAATTCTTTGGCGTCCAA 57.637 42.857 7.15 7.15 44.81 3.53
880 881 3.008141 TTTGGCGTCCAAATCGACA 57.992 47.368 16.73 0.00 46.92 4.35
881 882 0.871722 TTTGGCGTCCAAATCGACAG 59.128 50.000 16.73 0.00 46.92 3.51
882 883 1.573829 TTGGCGTCCAAATCGACAGC 61.574 55.000 8.58 0.00 46.90 4.40
883 884 2.032634 GGCGTCCAAATCGACAGCA 61.033 57.895 0.00 0.00 36.24 4.41
884 885 1.421485 GCGTCCAAATCGACAGCAG 59.579 57.895 0.00 0.00 34.56 4.24
885 886 1.421485 CGTCCAAATCGACAGCAGC 59.579 57.895 0.00 0.00 32.74 5.25
886 887 1.796796 GTCCAAATCGACAGCAGCC 59.203 57.895 0.00 0.00 32.74 4.85
887 888 1.741401 TCCAAATCGACAGCAGCCG 60.741 57.895 0.00 0.00 0.00 5.52
888 889 2.099062 CAAATCGACAGCAGCCGC 59.901 61.111 0.00 0.00 38.99 6.53
889 890 3.490759 AAATCGACAGCAGCCGCG 61.491 61.111 0.00 0.00 45.49 6.46
890 891 4.742201 AATCGACAGCAGCCGCGT 62.742 61.111 4.92 0.00 45.49 6.01
899 900 2.356313 CAGCCGCGTCACTGTCTT 60.356 61.111 4.92 0.00 0.00 3.01
900 901 1.080772 CAGCCGCGTCACTGTCTTA 60.081 57.895 4.92 0.00 0.00 2.10
901 902 1.080705 AGCCGCGTCACTGTCTTAC 60.081 57.895 4.92 0.00 0.00 2.34
902 903 2.434134 GCCGCGTCACTGTCTTACG 61.434 63.158 4.92 0.00 39.55 3.18
903 904 1.800315 CCGCGTCACTGTCTTACGG 60.800 63.158 4.92 0.00 37.12 4.02
904 905 2.434134 CGCGTCACTGTCTTACGGC 61.434 63.158 0.00 2.10 37.12 5.68
905 906 1.372499 GCGTCACTGTCTTACGGCA 60.372 57.895 8.39 0.00 37.12 5.69
906 907 1.615107 GCGTCACTGTCTTACGGCAC 61.615 60.000 8.39 0.00 37.12 5.01
907 908 0.318360 CGTCACTGTCTTACGGCACA 60.318 55.000 0.00 0.00 33.13 4.57
908 909 1.137513 GTCACTGTCTTACGGCACAC 58.862 55.000 0.00 0.00 0.00 3.82
909 910 0.032952 TCACTGTCTTACGGCACACC 59.967 55.000 0.00 0.00 0.00 4.16
910 911 0.033504 CACTGTCTTACGGCACACCT 59.966 55.000 0.00 0.00 0.00 4.00
911 912 0.317479 ACTGTCTTACGGCACACCTC 59.683 55.000 0.00 0.00 0.00 3.85
912 913 0.389948 CTGTCTTACGGCACACCTCC 60.390 60.000 0.00 0.00 0.00 4.30
913 914 1.079336 GTCTTACGGCACACCTCCC 60.079 63.158 0.00 0.00 0.00 4.30
914 915 2.267961 CTTACGGCACACCTCCCC 59.732 66.667 0.00 0.00 0.00 4.81
915 916 2.203877 TTACGGCACACCTCCCCT 60.204 61.111 0.00 0.00 0.00 4.79
916 917 2.240162 CTTACGGCACACCTCCCCTC 62.240 65.000 0.00 0.00 0.00 4.30
917 918 2.741878 TTACGGCACACCTCCCCTCT 62.742 60.000 0.00 0.00 0.00 3.69
918 919 1.866483 TACGGCACACCTCCCCTCTA 61.866 60.000 0.00 0.00 0.00 2.43
919 920 2.722201 CGGCACACCTCCCCTCTAC 61.722 68.421 0.00 0.00 0.00 2.59
920 921 2.368011 GGCACACCTCCCCTCTACC 61.368 68.421 0.00 0.00 0.00 3.18
921 922 1.612442 GCACACCTCCCCTCTACCA 60.612 63.158 0.00 0.00 0.00 3.25
922 923 1.900545 GCACACCTCCCCTCTACCAC 61.901 65.000 0.00 0.00 0.00 4.16
923 924 0.252284 CACACCTCCCCTCTACCACT 60.252 60.000 0.00 0.00 0.00 4.00
924 925 0.041386 ACACCTCCCCTCTACCACTC 59.959 60.000 0.00 0.00 0.00 3.51
925 926 0.336737 CACCTCCCCTCTACCACTCT 59.663 60.000 0.00 0.00 0.00 3.24
926 927 0.336737 ACCTCCCCTCTACCACTCTG 59.663 60.000 0.00 0.00 0.00 3.35
927 928 0.336737 CCTCCCCTCTACCACTCTGT 59.663 60.000 0.00 0.00 0.00 3.41
928 929 1.273324 CCTCCCCTCTACCACTCTGTT 60.273 57.143 0.00 0.00 0.00 3.16
929 930 2.541466 CTCCCCTCTACCACTCTGTTT 58.459 52.381 0.00 0.00 0.00 2.83
930 931 2.498078 CTCCCCTCTACCACTCTGTTTC 59.502 54.545 0.00 0.00 0.00 2.78
931 932 2.111972 TCCCCTCTACCACTCTGTTTCT 59.888 50.000 0.00 0.00 0.00 2.52
932 933 2.907042 CCCCTCTACCACTCTGTTTCTT 59.093 50.000 0.00 0.00 0.00 2.52
933 934 3.328050 CCCCTCTACCACTCTGTTTCTTT 59.672 47.826 0.00 0.00 0.00 2.52
934 935 4.563786 CCCCTCTACCACTCTGTTTCTTTC 60.564 50.000 0.00 0.00 0.00 2.62
935 936 4.040461 CCCTCTACCACTCTGTTTCTTTCA 59.960 45.833 0.00 0.00 0.00 2.69
936 937 5.454755 CCCTCTACCACTCTGTTTCTTTCAA 60.455 44.000 0.00 0.00 0.00 2.69
937 938 5.698545 CCTCTACCACTCTGTTTCTTTCAAG 59.301 44.000 0.00 0.00 0.00 3.02
938 939 5.611374 TCTACCACTCTGTTTCTTTCAAGG 58.389 41.667 0.00 0.00 0.00 3.61
939 940 2.952310 ACCACTCTGTTTCTTTCAAGGC 59.048 45.455 0.00 0.00 0.00 4.35
940 941 2.294512 CCACTCTGTTTCTTTCAAGGCC 59.705 50.000 0.00 0.00 0.00 5.19
941 942 2.031682 CACTCTGTTTCTTTCAAGGCCG 60.032 50.000 0.00 0.00 0.00 6.13
942 943 2.158813 ACTCTGTTTCTTTCAAGGCCGA 60.159 45.455 0.00 0.00 0.00 5.54
943 944 2.481952 CTCTGTTTCTTTCAAGGCCGAG 59.518 50.000 0.00 0.00 0.00 4.63
944 945 2.158813 TCTGTTTCTTTCAAGGCCGAGT 60.159 45.455 0.00 0.00 0.00 4.18
945 946 3.070446 TCTGTTTCTTTCAAGGCCGAGTA 59.930 43.478 0.00 0.00 0.00 2.59
946 947 3.399330 TGTTTCTTTCAAGGCCGAGTAG 58.601 45.455 0.00 0.00 0.00 2.57
947 948 2.742589 GTTTCTTTCAAGGCCGAGTAGG 59.257 50.000 0.00 0.00 44.97 3.18
948 949 1.933021 TCTTTCAAGGCCGAGTAGGA 58.067 50.000 0.00 0.00 45.00 2.94
959 960 3.075884 GCCGAGTAGGACTATAGAGTGG 58.924 54.545 6.78 0.00 45.00 4.00
960 961 3.677190 CCGAGTAGGACTATAGAGTGGG 58.323 54.545 6.78 0.00 45.00 4.61
961 962 3.075884 CGAGTAGGACTATAGAGTGGGC 58.924 54.545 6.78 0.00 35.45 5.36
962 963 3.496337 CGAGTAGGACTATAGAGTGGGCA 60.496 52.174 6.78 0.00 35.45 5.36
979 980 4.988598 AAGCGGCAGACGTGTGGG 62.989 66.667 15.19 0.00 46.52 4.61
984 985 2.646719 GCAGACGTGTGGGTCGTA 59.353 61.111 15.19 0.00 41.64 3.43
1021 1022 3.691342 CCTTGACCGGCGGAGACA 61.691 66.667 35.78 24.62 27.25 3.41
1022 1023 2.125912 CTTGACCGGCGGAGACAG 60.126 66.667 35.78 18.00 27.25 3.51
1023 1024 4.373116 TTGACCGGCGGAGACAGC 62.373 66.667 35.78 14.08 27.25 4.40
1056 1057 4.057428 GGGCTCGTCTGCGTGACT 62.057 66.667 7.83 0.00 43.25 3.41
1152 1153 2.424601 CCAGAACCTCCGTACGTATCAA 59.575 50.000 15.21 0.00 0.00 2.57
1155 1156 1.760192 ACCTCCGTACGTATCAAGCT 58.240 50.000 15.21 0.00 0.00 3.74
1156 1157 2.923121 ACCTCCGTACGTATCAAGCTA 58.077 47.619 15.21 0.00 0.00 3.32
1168 1176 4.320861 CGTATCAAGCTATCCTCCTCTGTG 60.321 50.000 0.00 0.00 0.00 3.66
1170 1178 2.762887 TCAAGCTATCCTCCTCTGTGTG 59.237 50.000 0.00 0.00 0.00 3.82
1172 1180 2.106566 AGCTATCCTCCTCTGTGTGTG 58.893 52.381 0.00 0.00 0.00 3.82
1174 1182 2.417924 GCTATCCTCCTCTGTGTGTGTG 60.418 54.545 0.00 0.00 0.00 3.82
1175 1183 1.722034 ATCCTCCTCTGTGTGTGTGT 58.278 50.000 0.00 0.00 0.00 3.72
1176 1184 0.752658 TCCTCCTCTGTGTGTGTGTG 59.247 55.000 0.00 0.00 0.00 3.82
1177 1185 0.465705 CCTCCTCTGTGTGTGTGTGT 59.534 55.000 0.00 0.00 0.00 3.72
1178 1186 1.575244 CTCCTCTGTGTGTGTGTGTG 58.425 55.000 0.00 0.00 0.00 3.82
1179 1187 0.901827 TCCTCTGTGTGTGTGTGTGT 59.098 50.000 0.00 0.00 0.00 3.72
1180 1188 1.009078 CCTCTGTGTGTGTGTGTGTG 58.991 55.000 0.00 0.00 0.00 3.82
1184 1192 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1220 1228 3.009723 ACGCAAGATTGTTTGATCGGAT 58.990 40.909 0.00 0.00 43.62 4.18
1224 1232 4.795278 GCAAGATTGTTTGATCGGATTGTC 59.205 41.667 0.00 0.00 0.00 3.18
1225 1233 5.619757 GCAAGATTGTTTGATCGGATTGTCA 60.620 40.000 0.00 0.00 0.00 3.58
1234 1242 2.768253 TCGGATTGTCATTGCAGAGT 57.232 45.000 0.00 0.00 0.00 3.24
1401 1409 4.335647 CAGCCCGCACAAGACCCT 62.336 66.667 0.00 0.00 0.00 4.34
1424 1432 2.307934 GCAACTTTTCTTTGCCCACA 57.692 45.000 0.00 0.00 43.02 4.17
1425 1433 2.204237 GCAACTTTTCTTTGCCCACAG 58.796 47.619 0.00 0.00 43.02 3.66
1442 1601 1.449601 AGTAACTCCATTGCCGCGG 60.450 57.895 24.05 24.05 0.00 6.46
1455 1614 1.153647 CCGCGGCATACTTCAGACA 60.154 57.895 14.67 0.00 0.00 3.41
1467 1626 4.264460 ACTTCAGACATCAGAGTTCCAC 57.736 45.455 0.00 0.00 0.00 4.02
1468 1627 3.900601 ACTTCAGACATCAGAGTTCCACT 59.099 43.478 0.00 0.00 0.00 4.00
1469 1628 3.949842 TCAGACATCAGAGTTCCACTG 57.050 47.619 0.00 0.00 36.80 3.66
1472 1631 2.233431 AGACATCAGAGTTCCACTGCTC 59.767 50.000 0.00 0.00 35.61 4.26
1473 1632 1.973515 ACATCAGAGTTCCACTGCTCA 59.026 47.619 0.00 0.00 35.61 4.26
1474 1633 2.028294 ACATCAGAGTTCCACTGCTCAG 60.028 50.000 0.00 0.00 35.61 3.35
1477 1636 0.835543 AGAGTTCCACTGCTCAGCCT 60.836 55.000 0.00 0.00 34.39 4.58
1478 1637 0.673022 GAGTTCCACTGCTCAGCCTG 60.673 60.000 0.00 0.00 0.00 4.85
1483 1648 1.483827 TCCACTGCTCAGCCTGAATAG 59.516 52.381 0.00 0.00 0.00 1.73
1485 1650 2.104451 CCACTGCTCAGCCTGAATAGAT 59.896 50.000 10.77 0.00 0.00 1.98
1497 1662 6.094603 CAGCCTGAATAGATGCAAGTTAACTT 59.905 38.462 15.22 15.22 36.45 2.66
1588 1753 3.903783 GCCAAAGACAGCGGCATA 58.096 55.556 1.45 0.00 45.52 3.14
1609 1774 2.716828 GCGTGTCGTGATGGTGTCG 61.717 63.158 0.00 0.00 0.00 4.35
1662 7864 0.842030 AGGGCTGGTTGGTGAGATCA 60.842 55.000 0.00 0.00 0.00 2.92
1681 7883 1.266989 CAAAGGCTCCGTCCAAGAAAC 59.733 52.381 0.00 0.00 0.00 2.78
1734 7936 2.639065 GACAAAACTGTCAGGGACACA 58.361 47.619 4.53 0.00 37.67 3.72
1735 7937 3.013921 GACAAAACTGTCAGGGACACAA 58.986 45.455 4.53 0.00 37.67 3.33
1769 7971 2.357154 GGAGCAAAGGGGAAATCTAGCA 60.357 50.000 0.00 0.00 0.00 3.49
1774 7976 3.303351 AAGGGGAAATCTAGCATGTGG 57.697 47.619 0.00 0.00 0.00 4.17
1782 7984 2.408271 TCTAGCATGTGGCCTTGAAG 57.592 50.000 3.32 1.36 46.50 3.02
1789 7991 4.098960 AGCATGTGGCCTTGAAGAAATATG 59.901 41.667 3.32 0.00 46.50 1.78
1816 8018 4.032960 TGTGTATGCCAGGTTTGAAGAT 57.967 40.909 0.00 0.00 0.00 2.40
1826 8028 1.336795 GGTTTGAAGATTGTTGCGGGG 60.337 52.381 0.00 0.00 0.00 5.73
1852 8054 6.291377 AGTTTTTCTGCTGTATGAGAACTGA 58.709 36.000 0.00 0.00 0.00 3.41
1882 8084 5.588246 TGCACGTAACCATGATCAATAATGT 59.412 36.000 0.00 0.00 0.00 2.71
2166 8371 8.575649 AACCCGACAGAAATAATTTTATCACT 57.424 30.769 0.00 0.00 0.00 3.41
2280 8489 8.807667 ATCTCAAAACACAAGAATTTTGCTAG 57.192 30.769 4.88 0.00 42.80 3.42
2430 8764 4.996758 TGATGCATAGAAATACATCCCACG 59.003 41.667 0.00 0.00 35.70 4.94
2452 8786 4.003648 GGAAGTTTGACTACATCCCACAG 58.996 47.826 0.00 0.00 31.34 3.66
2465 8799 3.980646 TCCCACAGAAATTTGTCAACG 57.019 42.857 0.00 0.00 0.00 4.10
2516 8850 6.241645 AGAGAAAAACCTCGAAAGGATTGAT 58.758 36.000 0.00 0.00 46.67 2.57
2518 8852 8.049721 AGAGAAAAACCTCGAAAGGATTGATAT 58.950 33.333 0.00 0.00 46.67 1.63
2569 8906 4.320608 TTCAAAGCGGCTGAAGATTTTT 57.679 36.364 1.81 0.00 0.00 1.94
2630 8967 7.285629 TCAACTTGTTGATATCCTAGTCTCGAT 59.714 37.037 11.62 0.00 0.00 3.59
2631 8968 6.976088 ACTTGTTGATATCCTAGTCTCGATG 58.024 40.000 0.00 0.00 0.00 3.84
2645 8982 1.414181 CTCGATGAAGCCACCTGGTAT 59.586 52.381 0.00 0.00 37.57 2.73
2646 8983 1.138859 TCGATGAAGCCACCTGGTATG 59.861 52.381 0.00 0.00 37.57 2.39
2647 8984 1.811558 CGATGAAGCCACCTGGTATGG 60.812 57.143 0.00 0.00 40.50 2.74
2648 8985 1.490490 GATGAAGCCACCTGGTATGGA 59.510 52.381 7.49 0.00 39.87 3.41
2649 8986 1.367346 TGAAGCCACCTGGTATGGAA 58.633 50.000 7.49 0.00 39.87 3.53
2650 8987 1.922447 TGAAGCCACCTGGTATGGAAT 59.078 47.619 7.49 0.00 39.87 3.01
2651 8988 2.301346 GAAGCCACCTGGTATGGAATG 58.699 52.381 7.49 0.00 39.87 2.67
2652 8989 1.298953 AGCCACCTGGTATGGAATGT 58.701 50.000 7.49 0.00 39.87 2.71
2653 8990 1.640670 AGCCACCTGGTATGGAATGTT 59.359 47.619 7.49 0.00 39.87 2.71
2654 8991 2.024414 GCCACCTGGTATGGAATGTTC 58.976 52.381 7.49 0.00 39.87 3.18
2655 8992 2.357154 GCCACCTGGTATGGAATGTTCT 60.357 50.000 7.49 0.00 39.87 3.01
2656 8993 3.877735 GCCACCTGGTATGGAATGTTCTT 60.878 47.826 7.49 0.00 39.87 2.52
2657 8994 3.947834 CCACCTGGTATGGAATGTTCTTC 59.052 47.826 0.00 0.00 39.87 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.210116 CATATGGTACGTTGGCCAGAC 58.790 52.381 5.11 6.77 38.27 3.51
39 40 4.589046 TTTTTCTGGGCCAGCGAA 57.411 50.000 29.02 21.26 0.00 4.70
54 55 1.358759 CAAAGTCCAGGCGCGTTTT 59.641 52.632 8.43 0.00 0.00 2.43
70 71 1.473257 GCTACACCATGAGATCGGCAA 60.473 52.381 0.00 0.00 0.00 4.52
87 88 3.702048 AGCCTGCCCGAAACGCTA 61.702 61.111 0.00 0.00 0.00 4.26
125 126 7.466746 AATTTTTCCTTGTATAGCTTGCTCA 57.533 32.000 0.00 0.00 0.00 4.26
131 132 9.920946 TCCTCATTAATTTTTCCTTGTATAGCT 57.079 29.630 0.00 0.00 0.00 3.32
136 137 8.801882 ACGATCCTCATTAATTTTTCCTTGTA 57.198 30.769 0.00 0.00 0.00 2.41
140 141 5.527582 CGGACGATCCTCATTAATTTTTCCT 59.472 40.000 0.00 0.00 33.30 3.36
144 145 4.035208 GCACGGACGATCCTCATTAATTTT 59.965 41.667 0.00 0.00 33.30 1.82
145 146 3.560068 GCACGGACGATCCTCATTAATTT 59.440 43.478 0.00 0.00 33.30 1.82
175 176 2.679716 GCAGGGGAGATGGCTGTT 59.320 61.111 0.00 0.00 0.00 3.16
201 202 1.883084 CAAGCTCCGGCACCGTATC 60.883 63.158 8.49 0.00 41.70 2.24
247 248 4.322801 CCCCATTAGTGACTCTCGACTTTT 60.323 45.833 0.00 0.00 0.00 2.27
249 250 2.761208 CCCCATTAGTGACTCTCGACTT 59.239 50.000 0.00 0.00 0.00 3.01
303 304 3.576982 TCACTAACCGACTCAATTGTCCT 59.423 43.478 5.13 0.00 33.70 3.85
309 310 5.067936 CCAGAGTATCACTAACCGACTCAAT 59.932 44.000 0.00 0.00 39.20 2.57
323 324 1.751351 CAACCGAGAGCCAGAGTATCA 59.249 52.381 0.00 0.00 37.82 2.15
366 367 5.356882 AAATCAACTTCGATTTGAGCGAA 57.643 34.783 13.60 1.03 42.58 4.70
373 374 6.428771 TCCGGTCTTAAAATCAACTTCGATTT 59.571 34.615 0.00 0.00 45.35 2.17
374 375 5.935789 TCCGGTCTTAAAATCAACTTCGATT 59.064 36.000 0.00 0.00 37.20 3.34
390 391 0.400213 TCCAGCAAATGTCCGGTCTT 59.600 50.000 0.00 0.00 0.00 3.01
414 415 5.361857 CACGAACCTAAAGTCCCTCCTATTA 59.638 44.000 0.00 0.00 0.00 0.98
416 417 3.705072 CACGAACCTAAAGTCCCTCCTAT 59.295 47.826 0.00 0.00 0.00 2.57
417 418 3.094572 CACGAACCTAAAGTCCCTCCTA 58.905 50.000 0.00 0.00 0.00 2.94
424 425 4.974888 GGTCGATATCACGAACCTAAAGTC 59.025 45.833 3.12 0.00 43.08 3.01
429 430 1.265095 GCGGTCGATATCACGAACCTA 59.735 52.381 13.57 0.00 45.58 3.08
431 432 1.266786 CGCGGTCGATATCACGAACC 61.267 60.000 13.57 8.84 45.58 3.62
432 433 1.266786 CCGCGGTCGATATCACGAAC 61.267 60.000 19.50 4.09 45.01 3.95
452 453 1.426598 CCATTATCATGGTGGAGGGCT 59.573 52.381 0.00 0.00 44.81 5.19
453 454 1.915141 CCATTATCATGGTGGAGGGC 58.085 55.000 0.00 0.00 44.81 5.19
477 478 0.103208 CCCTCCTGCAGTATGTCGAC 59.897 60.000 13.81 9.11 39.31 4.20
481 482 1.273267 TGTCTCCCTCCTGCAGTATGT 60.273 52.381 13.81 0.00 39.31 2.29
482 483 1.137872 GTGTCTCCCTCCTGCAGTATG 59.862 57.143 13.81 1.89 40.87 2.39
483 484 1.490574 GTGTCTCCCTCCTGCAGTAT 58.509 55.000 13.81 0.00 0.00 2.12
489 490 1.065126 GGAAATGGTGTCTCCCTCCTG 60.065 57.143 0.00 0.00 34.77 3.86
492 493 0.613777 ACGGAAATGGTGTCTCCCTC 59.386 55.000 0.00 0.00 34.77 4.30
495 496 0.323629 TGGACGGAAATGGTGTCTCC 59.676 55.000 0.00 0.00 33.21 3.71
496 497 1.439679 GTGGACGGAAATGGTGTCTC 58.560 55.000 0.00 0.00 33.21 3.36
522 523 0.179076 TCATCCACAGCATAGTGCCG 60.179 55.000 0.00 0.00 46.52 5.69
523 524 1.303309 GTCATCCACAGCATAGTGCC 58.697 55.000 0.00 0.00 46.52 5.01
524 525 2.028420 TGTCATCCACAGCATAGTGC 57.972 50.000 0.00 0.00 45.46 4.40
525 526 4.696877 TCTTTTGTCATCCACAGCATAGTG 59.303 41.667 0.00 0.00 35.97 2.74
526 527 4.910195 TCTTTTGTCATCCACAGCATAGT 58.090 39.130 0.00 0.00 35.97 2.12
527 528 5.587443 TCATCTTTTGTCATCCACAGCATAG 59.413 40.000 0.00 0.00 35.97 2.23
528 529 5.355071 GTCATCTTTTGTCATCCACAGCATA 59.645 40.000 0.00 0.00 35.97 3.14
529 530 4.157289 GTCATCTTTTGTCATCCACAGCAT 59.843 41.667 0.00 0.00 35.97 3.79
530 531 3.503363 GTCATCTTTTGTCATCCACAGCA 59.497 43.478 0.00 0.00 35.97 4.41
531 532 3.503363 TGTCATCTTTTGTCATCCACAGC 59.497 43.478 0.00 0.00 35.97 4.40
532 533 5.694231 TTGTCATCTTTTGTCATCCACAG 57.306 39.130 0.00 0.00 35.97 3.66
533 534 6.320926 TCTTTTGTCATCTTTTGTCATCCACA 59.679 34.615 0.00 0.00 0.00 4.17
534 535 6.738114 TCTTTTGTCATCTTTTGTCATCCAC 58.262 36.000 0.00 0.00 0.00 4.02
535 536 6.957920 TCTTTTGTCATCTTTTGTCATCCA 57.042 33.333 0.00 0.00 0.00 3.41
536 537 8.822652 AAATCTTTTGTCATCTTTTGTCATCC 57.177 30.769 0.00 0.00 0.00 3.51
538 539 9.820725 TGAAAATCTTTTGTCATCTTTTGTCAT 57.179 25.926 0.00 0.00 0.00 3.06
539 540 9.304731 CTGAAAATCTTTTGTCATCTTTTGTCA 57.695 29.630 0.00 0.00 28.65 3.58
540 541 9.520204 TCTGAAAATCTTTTGTCATCTTTTGTC 57.480 29.630 0.00 0.00 28.65 3.18
543 544 9.403110 CGATCTGAAAATCTTTTGTCATCTTTT 57.597 29.630 0.00 0.00 28.65 2.27
544 545 7.540055 GCGATCTGAAAATCTTTTGTCATCTTT 59.460 33.333 0.00 0.00 28.65 2.52
545 546 7.025963 GCGATCTGAAAATCTTTTGTCATCTT 58.974 34.615 0.00 0.00 28.65 2.40
546 547 6.149973 TGCGATCTGAAAATCTTTTGTCATCT 59.850 34.615 0.00 0.00 28.65 2.90
547 548 6.250104 GTGCGATCTGAAAATCTTTTGTCATC 59.750 38.462 0.00 0.00 28.65 2.92
548 549 6.072286 AGTGCGATCTGAAAATCTTTTGTCAT 60.072 34.615 0.00 0.00 28.65 3.06
549 550 5.239306 AGTGCGATCTGAAAATCTTTTGTCA 59.761 36.000 0.00 0.00 0.00 3.58
550 551 5.693814 AGTGCGATCTGAAAATCTTTTGTC 58.306 37.500 0.00 0.00 0.00 3.18
551 552 5.695851 AGTGCGATCTGAAAATCTTTTGT 57.304 34.783 0.00 0.00 0.00 2.83
552 553 7.219535 CCATTAGTGCGATCTGAAAATCTTTTG 59.780 37.037 0.00 0.00 0.00 2.44
553 554 7.253422 CCATTAGTGCGATCTGAAAATCTTTT 58.747 34.615 0.00 0.00 0.00 2.27
554 555 6.183360 CCCATTAGTGCGATCTGAAAATCTTT 60.183 38.462 0.00 0.00 0.00 2.52
555 556 5.297776 CCCATTAGTGCGATCTGAAAATCTT 59.702 40.000 0.00 0.00 0.00 2.40
556 557 4.818546 CCCATTAGTGCGATCTGAAAATCT 59.181 41.667 0.00 0.00 0.00 2.40
557 558 4.023707 CCCCATTAGTGCGATCTGAAAATC 60.024 45.833 0.00 0.00 0.00 2.17
558 559 3.885297 CCCCATTAGTGCGATCTGAAAAT 59.115 43.478 0.00 0.00 0.00 1.82
559 560 3.054728 TCCCCATTAGTGCGATCTGAAAA 60.055 43.478 0.00 0.00 0.00 2.29
560 561 2.503765 TCCCCATTAGTGCGATCTGAAA 59.496 45.455 0.00 0.00 0.00 2.69
561 562 2.115427 TCCCCATTAGTGCGATCTGAA 58.885 47.619 0.00 0.00 0.00 3.02
562 563 1.788229 TCCCCATTAGTGCGATCTGA 58.212 50.000 0.00 0.00 0.00 3.27
563 564 2.613977 GGATCCCCATTAGTGCGATCTG 60.614 54.545 0.00 0.00 33.49 2.90
564 565 1.625818 GGATCCCCATTAGTGCGATCT 59.374 52.381 0.00 0.00 33.49 2.75
565 566 1.625818 AGGATCCCCATTAGTGCGATC 59.374 52.381 8.55 5.48 32.79 3.69
566 567 1.625818 GAGGATCCCCATTAGTGCGAT 59.374 52.381 8.55 0.00 33.88 4.58
567 568 1.048601 GAGGATCCCCATTAGTGCGA 58.951 55.000 8.55 0.00 33.88 5.10
568 569 0.758734 TGAGGATCCCCATTAGTGCG 59.241 55.000 8.55 0.00 33.88 5.34
569 570 1.490490 TGTGAGGATCCCCATTAGTGC 59.510 52.381 8.55 0.00 33.88 4.40
570 571 3.434167 CCTTGTGAGGATCCCCATTAGTG 60.434 52.174 8.55 0.00 46.74 2.74
571 572 2.780010 CCTTGTGAGGATCCCCATTAGT 59.220 50.000 8.55 0.00 46.74 2.24
572 573 3.498774 CCTTGTGAGGATCCCCATTAG 57.501 52.381 8.55 4.43 46.74 1.73
583 584 3.641434 ATTGTGAGGATCCTTGTGAGG 57.359 47.619 17.42 0.00 45.02 3.86
584 585 4.582869 TCAATTGTGAGGATCCTTGTGAG 58.417 43.478 17.42 3.61 0.00 3.51
585 586 4.582869 CTCAATTGTGAGGATCCTTGTGA 58.417 43.478 17.42 11.75 46.55 3.58
586 587 4.959596 CTCAATTGTGAGGATCCTTGTG 57.040 45.455 17.42 6.14 46.55 3.33
597 598 7.833786 ACGGTACTAAGAATACTCAATTGTGA 58.166 34.615 14.16 0.00 0.00 3.58
598 599 7.758076 TGACGGTACTAAGAATACTCAATTGTG 59.242 37.037 5.13 5.59 0.00 3.33
599 600 7.833786 TGACGGTACTAAGAATACTCAATTGT 58.166 34.615 5.13 0.00 0.00 2.71
600 601 8.873215 ATGACGGTACTAAGAATACTCAATTG 57.127 34.615 0.00 0.00 0.00 2.32
602 603 9.570468 TCTATGACGGTACTAAGAATACTCAAT 57.430 33.333 0.00 0.00 0.00 2.57
603 604 8.969260 TCTATGACGGTACTAAGAATACTCAA 57.031 34.615 0.00 0.00 0.00 3.02
604 605 9.000486 CATCTATGACGGTACTAAGAATACTCA 58.000 37.037 0.00 0.00 0.00 3.41
605 606 9.217278 TCATCTATGACGGTACTAAGAATACTC 57.783 37.037 0.00 0.00 0.00 2.59
606 607 9.742144 ATCATCTATGACGGTACTAAGAATACT 57.258 33.333 0.00 0.00 40.03 2.12
615 616 8.861086 ACATCTTTTATCATCTATGACGGTACT 58.139 33.333 0.00 0.00 40.03 2.73
616 617 9.477484 AACATCTTTTATCATCTATGACGGTAC 57.523 33.333 0.00 0.00 40.03 3.34
617 618 9.692749 GAACATCTTTTATCATCTATGACGGTA 57.307 33.333 0.00 0.00 40.03 4.02
618 619 8.204160 TGAACATCTTTTATCATCTATGACGGT 58.796 33.333 0.00 0.00 40.03 4.83
619 620 8.593492 TGAACATCTTTTATCATCTATGACGG 57.407 34.615 0.00 0.00 40.03 4.79
620 621 9.468532 TCTGAACATCTTTTATCATCTATGACG 57.531 33.333 0.00 0.00 40.03 4.35
626 627 9.160496 GAACAGTCTGAACATCTTTTATCATCT 57.840 33.333 6.91 0.00 0.00 2.90
627 628 9.160496 AGAACAGTCTGAACATCTTTTATCATC 57.840 33.333 6.91 0.00 30.83 2.92
650 651 2.026636 CCCCCTAAATGTTCGGACAGAA 60.027 50.000 1.50 0.00 39.58 3.02
651 652 1.557832 CCCCCTAAATGTTCGGACAGA 59.442 52.381 1.50 0.00 39.58 3.41
652 653 2.038387 CCCCCTAAATGTTCGGACAG 57.962 55.000 1.50 0.00 39.58 3.51
668 669 1.304962 GGGTCACCAAATCACCCCC 60.305 63.158 0.00 0.00 43.79 5.40
669 670 4.434483 GGGTCACCAAATCACCCC 57.566 61.111 0.00 0.00 43.79 4.95
670 671 4.474205 TGTGAGGGTCACCAAATCACCC 62.474 54.545 18.51 0.00 46.40 4.61
671 672 1.202879 TGTGAGGGTCACCAAATCACC 60.203 52.381 18.51 6.25 46.40 4.02
672 673 2.270352 TGTGAGGGTCACCAAATCAC 57.730 50.000 15.77 15.77 46.40 3.06
673 674 2.441375 TCTTGTGAGGGTCACCAAATCA 59.559 45.455 0.00 0.00 46.40 2.57
674 675 3.140325 TCTTGTGAGGGTCACCAAATC 57.860 47.619 0.00 0.00 46.40 2.17
675 676 3.593442 TTCTTGTGAGGGTCACCAAAT 57.407 42.857 0.00 0.00 46.40 2.32
676 677 3.486383 GATTCTTGTGAGGGTCACCAAA 58.514 45.455 0.00 0.00 46.40 3.28
677 678 2.224769 GGATTCTTGTGAGGGTCACCAA 60.225 50.000 0.00 0.00 46.40 3.67
678 679 1.351017 GGATTCTTGTGAGGGTCACCA 59.649 52.381 0.00 0.00 46.40 4.17
679 680 1.676014 CGGATTCTTGTGAGGGTCACC 60.676 57.143 4.65 0.00 46.40 4.02
681 682 1.275291 GTCGGATTCTTGTGAGGGTCA 59.725 52.381 0.00 0.00 0.00 4.02
682 683 1.736032 CGTCGGATTCTTGTGAGGGTC 60.736 57.143 0.00 0.00 0.00 4.46
683 684 0.246635 CGTCGGATTCTTGTGAGGGT 59.753 55.000 0.00 0.00 0.00 4.34
684 685 1.084370 GCGTCGGATTCTTGTGAGGG 61.084 60.000 0.00 0.00 0.00 4.30
685 686 0.108615 AGCGTCGGATTCTTGTGAGG 60.109 55.000 0.00 0.00 0.00 3.86
686 687 1.272781 GAGCGTCGGATTCTTGTGAG 58.727 55.000 0.00 0.00 0.00 3.51
687 688 0.456142 CGAGCGTCGGATTCTTGTGA 60.456 55.000 0.00 0.00 36.00 3.58
688 689 1.991430 CGAGCGTCGGATTCTTGTG 59.009 57.895 0.00 0.00 36.00 3.33
689 690 4.478195 CGAGCGTCGGATTCTTGT 57.522 55.556 0.00 0.00 36.00 3.16
698 699 4.253257 GCCCTAGTCCGAGCGTCG 62.253 72.222 0.00 0.00 40.07 5.12
699 700 2.829458 AGCCCTAGTCCGAGCGTC 60.829 66.667 0.00 0.00 0.00 5.19
700 701 3.141488 CAGCCCTAGTCCGAGCGT 61.141 66.667 0.00 0.00 0.00 5.07
701 702 4.577246 GCAGCCCTAGTCCGAGCG 62.577 72.222 0.00 0.00 0.00 5.03
702 703 4.228567 GGCAGCCCTAGTCCGAGC 62.229 72.222 0.00 0.00 0.00 5.03
703 704 3.541713 GGGCAGCCCTAGTCCGAG 61.542 72.222 24.99 0.00 41.34 4.63
716 717 0.617935 TACAGTATGCTGCAAGGGCA 59.382 50.000 11.09 1.19 45.59 5.36
717 718 1.605710 CATACAGTATGCTGCAAGGGC 59.394 52.381 11.09 0.00 46.30 5.19
727 728 4.331992 GCCATCTATGCAGCATACAGTATG 59.668 45.833 15.39 15.39 46.00 2.39
728 729 4.019950 TGCCATCTATGCAGCATACAGTAT 60.020 41.667 11.33 0.70 34.05 2.12
729 730 3.324556 TGCCATCTATGCAGCATACAGTA 59.675 43.478 11.33 0.00 34.05 2.74
730 731 2.105306 TGCCATCTATGCAGCATACAGT 59.895 45.455 11.33 0.00 34.05 3.55
731 732 2.483106 GTGCCATCTATGCAGCATACAG 59.517 50.000 11.33 4.90 39.87 2.74
732 733 2.158784 TGTGCCATCTATGCAGCATACA 60.159 45.455 11.33 5.92 39.87 2.29
733 734 2.497138 TGTGCCATCTATGCAGCATAC 58.503 47.619 11.33 3.20 39.87 2.39
734 735 2.934886 TGTGCCATCTATGCAGCATA 57.065 45.000 14.59 14.59 39.87 3.14
735 736 2.061509 TTGTGCCATCTATGCAGCAT 57.938 45.000 13.73 13.73 39.87 3.79
736 737 1.951602 GATTGTGCCATCTATGCAGCA 59.048 47.619 0.00 0.00 39.87 4.41
737 738 2.228059 AGATTGTGCCATCTATGCAGC 58.772 47.619 0.00 0.00 39.87 5.25
738 739 4.639334 AGTAGATTGTGCCATCTATGCAG 58.361 43.478 0.00 0.00 39.87 4.41
739 740 4.694760 AGTAGATTGTGCCATCTATGCA 57.305 40.909 0.00 0.00 36.12 3.96
740 741 4.214971 CCAAGTAGATTGTGCCATCTATGC 59.785 45.833 1.82 0.00 37.17 3.14
741 742 4.214971 GCCAAGTAGATTGTGCCATCTATG 59.785 45.833 1.82 0.00 37.17 2.23
742 743 4.103785 AGCCAAGTAGATTGTGCCATCTAT 59.896 41.667 1.82 0.00 37.17 1.98
743 744 3.455910 AGCCAAGTAGATTGTGCCATCTA 59.544 43.478 0.00 0.00 37.17 1.98
744 745 2.240667 AGCCAAGTAGATTGTGCCATCT 59.759 45.455 0.00 0.00 37.17 2.90
745 746 2.648059 AGCCAAGTAGATTGTGCCATC 58.352 47.619 0.00 0.00 37.17 3.51
746 747 2.814805 AGCCAAGTAGATTGTGCCAT 57.185 45.000 0.00 0.00 37.17 4.40
747 748 2.837591 TCTAGCCAAGTAGATTGTGCCA 59.162 45.455 0.00 0.00 37.17 4.92
748 749 3.462021 CTCTAGCCAAGTAGATTGTGCC 58.538 50.000 0.00 0.00 37.17 5.01
749 750 3.118592 ACCTCTAGCCAAGTAGATTGTGC 60.119 47.826 0.00 0.00 37.17 4.57
750 751 4.160439 TGACCTCTAGCCAAGTAGATTGTG 59.840 45.833 0.00 0.00 37.17 3.33
751 752 4.353777 TGACCTCTAGCCAAGTAGATTGT 58.646 43.478 0.00 0.00 37.17 2.71
752 753 5.543507 ATGACCTCTAGCCAAGTAGATTG 57.456 43.478 0.00 0.00 38.74 2.67
753 754 6.266558 CACTATGACCTCTAGCCAAGTAGATT 59.733 42.308 0.00 0.00 0.00 2.40
754 755 5.772672 CACTATGACCTCTAGCCAAGTAGAT 59.227 44.000 0.00 0.00 0.00 1.98
755 756 5.133941 CACTATGACCTCTAGCCAAGTAGA 58.866 45.833 0.00 0.00 0.00 2.59
756 757 4.279671 CCACTATGACCTCTAGCCAAGTAG 59.720 50.000 0.00 0.00 0.00 2.57
757 758 4.215908 CCACTATGACCTCTAGCCAAGTA 58.784 47.826 0.00 0.00 0.00 2.24
758 759 3.034635 CCACTATGACCTCTAGCCAAGT 58.965 50.000 0.00 0.00 0.00 3.16
759 760 2.366916 CCCACTATGACCTCTAGCCAAG 59.633 54.545 0.00 0.00 0.00 3.61
760 761 2.398588 CCCACTATGACCTCTAGCCAA 58.601 52.381 0.00 0.00 0.00 4.52
761 762 2.034799 GCCCACTATGACCTCTAGCCA 61.035 57.143 0.00 0.00 0.00 4.75
762 763 0.682292 GCCCACTATGACCTCTAGCC 59.318 60.000 0.00 0.00 0.00 3.93
763 764 0.682292 GGCCCACTATGACCTCTAGC 59.318 60.000 0.00 0.00 0.00 3.42
764 765 2.088104 TGGCCCACTATGACCTCTAG 57.912 55.000 0.00 0.00 0.00 2.43
765 766 2.795291 ATGGCCCACTATGACCTCTA 57.205 50.000 0.00 0.00 0.00 2.43
766 767 1.898863 AATGGCCCACTATGACCTCT 58.101 50.000 0.00 0.00 0.00 3.69
767 768 3.307762 GGATAATGGCCCACTATGACCTC 60.308 52.174 0.00 0.00 0.00 3.85
768 769 2.644798 GGATAATGGCCCACTATGACCT 59.355 50.000 0.00 0.00 0.00 3.85
769 770 2.644798 AGGATAATGGCCCACTATGACC 59.355 50.000 0.00 0.00 0.00 4.02
770 771 4.373156 AAGGATAATGGCCCACTATGAC 57.627 45.455 0.00 0.00 0.00 3.06
771 772 6.126768 GCTATAAGGATAATGGCCCACTATGA 60.127 42.308 0.00 0.00 0.00 2.15
772 773 6.058183 GCTATAAGGATAATGGCCCACTATG 58.942 44.000 0.00 0.00 0.00 2.23
773 774 5.163301 CGCTATAAGGATAATGGCCCACTAT 60.163 44.000 0.00 0.00 0.00 2.12
774 775 4.161565 CGCTATAAGGATAATGGCCCACTA 59.838 45.833 0.00 0.00 0.00 2.74
775 776 3.055094 CGCTATAAGGATAATGGCCCACT 60.055 47.826 0.00 0.00 0.00 4.00
776 777 3.055385 TCGCTATAAGGATAATGGCCCAC 60.055 47.826 0.00 0.00 0.00 4.61
777 778 3.055385 GTCGCTATAAGGATAATGGCCCA 60.055 47.826 0.00 0.00 0.00 5.36
778 779 3.532542 GTCGCTATAAGGATAATGGCCC 58.467 50.000 0.00 0.00 0.00 5.80
779 780 3.197983 AGGTCGCTATAAGGATAATGGCC 59.802 47.826 0.00 0.00 0.00 5.36
780 781 4.081642 TCAGGTCGCTATAAGGATAATGGC 60.082 45.833 0.00 0.00 0.00 4.40
781 782 5.661056 TCAGGTCGCTATAAGGATAATGG 57.339 43.478 0.00 0.00 0.00 3.16
782 783 9.653287 TTATTTCAGGTCGCTATAAGGATAATG 57.347 33.333 0.00 0.00 0.00 1.90
784 785 9.653287 CATTATTTCAGGTCGCTATAAGGATAA 57.347 33.333 0.00 0.00 0.00 1.75
785 786 8.258007 CCATTATTTCAGGTCGCTATAAGGATA 58.742 37.037 0.00 0.00 0.00 2.59
786 787 7.106239 CCATTATTTCAGGTCGCTATAAGGAT 58.894 38.462 0.00 0.00 0.00 3.24
787 788 6.042781 ACCATTATTTCAGGTCGCTATAAGGA 59.957 38.462 0.00 0.00 0.00 3.36
788 789 6.147821 CACCATTATTTCAGGTCGCTATAAGG 59.852 42.308 0.00 0.00 32.15 2.69
789 790 6.147821 CCACCATTATTTCAGGTCGCTATAAG 59.852 42.308 0.00 0.00 32.15 1.73
790 791 5.995282 CCACCATTATTTCAGGTCGCTATAA 59.005 40.000 0.00 0.00 32.15 0.98
791 792 5.071250 ACCACCATTATTTCAGGTCGCTATA 59.929 40.000 0.00 0.00 32.15 1.31
792 793 4.141482 ACCACCATTATTTCAGGTCGCTAT 60.141 41.667 0.00 0.00 32.15 2.97
793 794 3.199071 ACCACCATTATTTCAGGTCGCTA 59.801 43.478 0.00 0.00 32.15 4.26
794 795 2.026262 ACCACCATTATTTCAGGTCGCT 60.026 45.455 0.00 0.00 32.15 4.93
795 796 2.354821 GACCACCATTATTTCAGGTCGC 59.645 50.000 0.00 0.00 36.55 5.19
796 797 3.605634 TGACCACCATTATTTCAGGTCG 58.394 45.455 0.00 0.00 46.45 4.79
797 798 4.339247 CCATGACCACCATTATTTCAGGTC 59.661 45.833 0.00 0.00 44.37 3.85
798 799 4.280819 CCATGACCACCATTATTTCAGGT 58.719 43.478 0.00 0.00 35.65 4.00
799 800 3.638160 CCCATGACCACCATTATTTCAGG 59.362 47.826 0.00 0.00 31.94 3.86
800 801 3.638160 CCCCATGACCACCATTATTTCAG 59.362 47.826 0.00 0.00 31.94 3.02
801 802 3.012274 ACCCCATGACCACCATTATTTCA 59.988 43.478 0.00 0.00 31.94 2.69
802 803 3.384467 CACCCCATGACCACCATTATTTC 59.616 47.826 0.00 0.00 31.94 2.17
803 804 3.012274 TCACCCCATGACCACCATTATTT 59.988 43.478 0.00 0.00 31.94 1.40
804 805 2.584965 TCACCCCATGACCACCATTATT 59.415 45.455 0.00 0.00 31.94 1.40
805 806 2.213310 TCACCCCATGACCACCATTAT 58.787 47.619 0.00 0.00 31.94 1.28
806 807 1.675007 TCACCCCATGACCACCATTA 58.325 50.000 0.00 0.00 31.94 1.90
807 808 0.783206 TTCACCCCATGACCACCATT 59.217 50.000 0.00 0.00 36.92 3.16
808 809 1.009997 ATTCACCCCATGACCACCAT 58.990 50.000 0.00 0.00 36.92 3.55
809 810 0.039472 CATTCACCCCATGACCACCA 59.961 55.000 0.00 0.00 36.92 4.17
810 811 0.039618 ACATTCACCCCATGACCACC 59.960 55.000 0.00 0.00 36.92 4.61
811 812 1.176527 CACATTCACCCCATGACCAC 58.823 55.000 0.00 0.00 36.92 4.16
812 813 1.071434 TCACATTCACCCCATGACCA 58.929 50.000 0.00 0.00 36.92 4.02
813 814 2.214376 TTCACATTCACCCCATGACC 57.786 50.000 0.00 0.00 36.92 4.02
814 815 4.019174 AGAATTCACATTCACCCCATGAC 58.981 43.478 8.44 0.00 41.37 3.06
815 816 4.320546 AGAATTCACATTCACCCCATGA 57.679 40.909 8.44 0.00 41.37 3.07
816 817 5.002464 GAAGAATTCACATTCACCCCATG 57.998 43.478 8.44 0.00 46.62 3.66
830 831 2.576615 CATTCTCCCGGGGAAGAATTC 58.423 52.381 27.08 0.00 46.67 2.17
831 832 1.410224 GCATTCTCCCGGGGAAGAATT 60.410 52.381 27.08 14.53 31.93 2.17
832 833 0.183731 GCATTCTCCCGGGGAAGAAT 59.816 55.000 24.97 24.97 33.33 2.40
833 834 1.607612 GCATTCTCCCGGGGAAGAA 59.392 57.895 23.03 23.03 0.00 2.52
834 835 2.375345 GGCATTCTCCCGGGGAAGA 61.375 63.158 23.50 14.97 0.00 2.87
835 836 2.193248 GGCATTCTCCCGGGGAAG 59.807 66.667 23.50 12.40 0.00 3.46
836 837 3.792736 CGGCATTCTCCCGGGGAA 61.793 66.667 23.50 22.55 41.99 3.97
837 838 4.789173 TCGGCATTCTCCCGGGGA 62.789 66.667 23.50 16.55 45.60 4.81
838 839 4.547367 GTCGGCATTCTCCCGGGG 62.547 72.222 23.50 12.05 45.60 5.73
839 840 2.813226 TTTGTCGGCATTCTCCCGGG 62.813 60.000 16.85 16.85 45.60 5.73
840 841 0.748005 ATTTGTCGGCATTCTCCCGG 60.748 55.000 0.00 0.00 45.60 5.73
841 842 1.064060 GAATTTGTCGGCATTCTCCCG 59.936 52.381 0.00 0.00 46.88 5.14
842 843 2.369394 AGAATTTGTCGGCATTCTCCC 58.631 47.619 0.02 0.00 35.21 4.30
843 844 4.440839 AAAGAATTTGTCGGCATTCTCC 57.559 40.909 6.35 0.00 38.55 3.71
863 864 1.573829 GCTGTCGATTTGGACGCCAA 61.574 55.000 7.15 7.15 42.29 4.52
864 865 2.032634 GCTGTCGATTTGGACGCCA 61.033 57.895 0.00 0.00 39.83 5.69
865 866 1.970917 CTGCTGTCGATTTGGACGCC 61.971 60.000 0.00 0.00 39.83 5.68
866 867 1.421485 CTGCTGTCGATTTGGACGC 59.579 57.895 0.00 0.00 39.83 5.19
867 868 1.421485 GCTGCTGTCGATTTGGACG 59.579 57.895 0.00 0.00 39.83 4.79
868 869 1.796796 GGCTGCTGTCGATTTGGAC 59.203 57.895 0.00 0.00 37.45 4.02
869 870 1.741401 CGGCTGCTGTCGATTTGGA 60.741 57.895 12.68 0.00 45.19 3.53
870 871 2.787249 CGGCTGCTGTCGATTTGG 59.213 61.111 12.68 0.00 45.19 3.28
871 872 2.099062 GCGGCTGCTGTCGATTTG 59.901 61.111 22.31 0.00 45.19 2.32
872 873 3.490759 CGCGGCTGCTGTCGATTT 61.491 61.111 22.31 0.00 45.19 2.17
873 874 4.742201 ACGCGGCTGCTGTCGATT 62.742 61.111 22.31 3.57 45.19 3.34
882 883 1.080772 TAAGACAGTGACGCGGCTG 60.081 57.895 15.80 18.86 38.58 4.85
883 884 1.080705 GTAAGACAGTGACGCGGCT 60.081 57.895 15.80 3.51 0.00 5.52
884 885 2.434134 CGTAAGACAGTGACGCGGC 61.434 63.158 12.47 8.67 43.02 6.53
885 886 1.800315 CCGTAAGACAGTGACGCGG 60.800 63.158 12.47 4.59 43.02 6.46
886 887 2.434134 GCCGTAAGACAGTGACGCG 61.434 63.158 3.53 3.53 43.02 6.01
887 888 1.372499 TGCCGTAAGACAGTGACGC 60.372 57.895 0.00 0.00 43.02 5.19
888 889 0.318360 TGTGCCGTAAGACAGTGACG 60.318 55.000 0.00 0.00 43.02 4.35
889 890 1.137513 GTGTGCCGTAAGACAGTGAC 58.862 55.000 0.00 0.00 43.02 3.67
890 891 0.032952 GGTGTGCCGTAAGACAGTGA 59.967 55.000 0.00 0.00 43.02 3.41
891 892 0.033504 AGGTGTGCCGTAAGACAGTG 59.966 55.000 0.00 0.00 40.50 3.66
892 893 0.317479 GAGGTGTGCCGTAAGACAGT 59.683 55.000 0.00 0.00 40.50 3.55
893 894 0.389948 GGAGGTGTGCCGTAAGACAG 60.390 60.000 0.00 0.00 40.50 3.51
894 895 1.669440 GGAGGTGTGCCGTAAGACA 59.331 57.895 0.00 0.00 40.50 3.41
895 896 1.079336 GGGAGGTGTGCCGTAAGAC 60.079 63.158 0.00 0.00 40.50 3.01
896 897 2.288025 GGGGAGGTGTGCCGTAAGA 61.288 63.158 0.00 0.00 40.50 2.10
897 898 2.240162 GAGGGGAGGTGTGCCGTAAG 62.240 65.000 0.00 0.00 40.50 2.34
898 899 2.203877 AGGGGAGGTGTGCCGTAA 60.204 61.111 0.00 0.00 40.50 3.18
899 900 1.866483 TAGAGGGGAGGTGTGCCGTA 61.866 60.000 0.00 0.00 40.50 4.02
900 901 3.233919 TAGAGGGGAGGTGTGCCGT 62.234 63.158 0.00 0.00 40.50 5.68
901 902 2.363795 TAGAGGGGAGGTGTGCCG 60.364 66.667 0.00 0.00 40.50 5.69
902 903 2.368011 GGTAGAGGGGAGGTGTGCC 61.368 68.421 0.00 0.00 0.00 5.01
903 904 1.612442 TGGTAGAGGGGAGGTGTGC 60.612 63.158 0.00 0.00 0.00 4.57
904 905 0.252284 AGTGGTAGAGGGGAGGTGTG 60.252 60.000 0.00 0.00 0.00 3.82
905 906 0.041386 GAGTGGTAGAGGGGAGGTGT 59.959 60.000 0.00 0.00 0.00 4.16
906 907 0.336737 AGAGTGGTAGAGGGGAGGTG 59.663 60.000 0.00 0.00 0.00 4.00
907 908 0.336737 CAGAGTGGTAGAGGGGAGGT 59.663 60.000 0.00 0.00 0.00 3.85
908 909 0.336737 ACAGAGTGGTAGAGGGGAGG 59.663 60.000 0.00 0.00 0.00 4.30
909 910 2.239681 AACAGAGTGGTAGAGGGGAG 57.760 55.000 0.00 0.00 0.00 4.30
910 911 2.111972 AGAAACAGAGTGGTAGAGGGGA 59.888 50.000 0.00 0.00 0.00 4.81
911 912 2.541466 AGAAACAGAGTGGTAGAGGGG 58.459 52.381 0.00 0.00 0.00 4.79
912 913 4.040461 TGAAAGAAACAGAGTGGTAGAGGG 59.960 45.833 0.00 0.00 0.00 4.30
913 914 5.215252 TGAAAGAAACAGAGTGGTAGAGG 57.785 43.478 0.00 0.00 0.00 3.69
914 915 5.698545 CCTTGAAAGAAACAGAGTGGTAGAG 59.301 44.000 0.00 0.00 0.00 2.43
915 916 5.611374 CCTTGAAAGAAACAGAGTGGTAGA 58.389 41.667 0.00 0.00 0.00 2.59
916 917 4.214332 GCCTTGAAAGAAACAGAGTGGTAG 59.786 45.833 0.00 0.00 0.00 3.18
917 918 4.134563 GCCTTGAAAGAAACAGAGTGGTA 58.865 43.478 0.00 0.00 0.00 3.25
918 919 2.952310 GCCTTGAAAGAAACAGAGTGGT 59.048 45.455 0.00 0.00 0.00 4.16
919 920 2.294512 GGCCTTGAAAGAAACAGAGTGG 59.705 50.000 0.00 0.00 0.00 4.00
920 921 2.031682 CGGCCTTGAAAGAAACAGAGTG 60.032 50.000 0.00 0.00 0.00 3.51
921 922 2.158813 TCGGCCTTGAAAGAAACAGAGT 60.159 45.455 0.00 0.00 0.00 3.24
922 923 2.481952 CTCGGCCTTGAAAGAAACAGAG 59.518 50.000 0.00 0.00 0.00 3.35
923 924 2.158813 ACTCGGCCTTGAAAGAAACAGA 60.159 45.455 0.00 0.00 0.00 3.41
924 925 2.222027 ACTCGGCCTTGAAAGAAACAG 58.778 47.619 0.00 0.00 0.00 3.16
925 926 2.341846 ACTCGGCCTTGAAAGAAACA 57.658 45.000 0.00 0.00 0.00 2.83
926 927 2.742589 CCTACTCGGCCTTGAAAGAAAC 59.257 50.000 0.00 0.00 0.00 2.78
927 928 2.635915 TCCTACTCGGCCTTGAAAGAAA 59.364 45.455 0.00 0.00 0.00 2.52
928 929 2.028385 GTCCTACTCGGCCTTGAAAGAA 60.028 50.000 0.00 0.00 0.00 2.52
929 930 1.549170 GTCCTACTCGGCCTTGAAAGA 59.451 52.381 0.00 0.00 0.00 2.52
930 931 1.550976 AGTCCTACTCGGCCTTGAAAG 59.449 52.381 0.00 0.00 0.00 2.62
931 932 1.640917 AGTCCTACTCGGCCTTGAAA 58.359 50.000 0.00 0.00 0.00 2.69
932 933 2.519771 TAGTCCTACTCGGCCTTGAA 57.480 50.000 0.00 0.00 0.00 2.69
933 934 2.750141 ATAGTCCTACTCGGCCTTGA 57.250 50.000 0.00 0.00 0.00 3.02
934 935 3.752665 TCTATAGTCCTACTCGGCCTTG 58.247 50.000 0.00 0.00 0.00 3.61
935 936 3.395273 ACTCTATAGTCCTACTCGGCCTT 59.605 47.826 0.00 0.00 0.00 4.35
936 937 2.981081 ACTCTATAGTCCTACTCGGCCT 59.019 50.000 0.00 0.00 0.00 5.19
937 938 3.075884 CACTCTATAGTCCTACTCGGCC 58.924 54.545 0.00 0.00 31.97 6.13
938 939 3.075884 CCACTCTATAGTCCTACTCGGC 58.924 54.545 0.00 0.00 31.97 5.54
939 940 3.677190 CCCACTCTATAGTCCTACTCGG 58.323 54.545 0.00 0.00 31.97 4.63
940 941 3.075884 GCCCACTCTATAGTCCTACTCG 58.924 54.545 0.00 0.00 31.97 4.18
941 942 4.101645 TGCCCACTCTATAGTCCTACTC 57.898 50.000 0.00 0.00 31.97 2.59
942 943 4.475345 CTTGCCCACTCTATAGTCCTACT 58.525 47.826 0.00 0.00 31.97 2.57
943 944 3.006003 GCTTGCCCACTCTATAGTCCTAC 59.994 52.174 0.00 0.00 31.97 3.18
944 945 3.231818 GCTTGCCCACTCTATAGTCCTA 58.768 50.000 0.00 0.00 31.97 2.94
945 946 2.043227 GCTTGCCCACTCTATAGTCCT 58.957 52.381 0.00 0.00 31.97 3.85
946 947 1.269831 CGCTTGCCCACTCTATAGTCC 60.270 57.143 0.00 0.00 31.97 3.85
947 948 1.269831 CCGCTTGCCCACTCTATAGTC 60.270 57.143 0.00 0.00 31.97 2.59
948 949 0.753262 CCGCTTGCCCACTCTATAGT 59.247 55.000 0.00 0.00 35.91 2.12
949 950 0.601311 GCCGCTTGCCCACTCTATAG 60.601 60.000 0.00 0.00 0.00 1.31
950 951 1.334384 TGCCGCTTGCCCACTCTATA 61.334 55.000 0.00 0.00 40.16 1.31
951 952 2.190578 GCCGCTTGCCCACTCTAT 59.809 61.111 0.00 0.00 0.00 1.98
952 953 3.315142 CTGCCGCTTGCCCACTCTA 62.315 63.158 0.00 0.00 40.16 2.43
953 954 4.711949 CTGCCGCTTGCCCACTCT 62.712 66.667 0.00 0.00 40.16 3.24
954 955 4.704833 TCTGCCGCTTGCCCACTC 62.705 66.667 0.00 0.00 40.16 3.51
960 961 4.374702 CACACGTCTGCCGCTTGC 62.375 66.667 0.00 0.00 41.42 4.01
961 962 3.716006 CCACACGTCTGCCGCTTG 61.716 66.667 0.00 0.00 41.42 4.01
962 963 4.988598 CCCACACGTCTGCCGCTT 62.989 66.667 0.00 0.00 41.42 4.68
1005 1006 2.125912 CTGTCTCCGCCGGTCAAG 60.126 66.667 1.63 0.00 0.00 3.02
1061 1062 2.436646 AGCCGATGAAACCGCTGG 60.437 61.111 0.00 0.00 0.00 4.85
1068 1069 1.221840 GAGCCAGGAGCCGATGAAA 59.778 57.895 0.00 0.00 45.47 2.69
1107 1108 4.367023 GCGTGGACGGTGTAGCCA 62.367 66.667 0.71 0.00 40.23 4.75
1152 1153 2.106566 CACACACAGAGGAGGATAGCT 58.893 52.381 0.00 0.00 0.00 3.32
1155 1156 2.562738 CACACACACACAGAGGAGGATA 59.437 50.000 0.00 0.00 0.00 2.59
1156 1157 1.345741 CACACACACACAGAGGAGGAT 59.654 52.381 0.00 0.00 0.00 3.24
1168 1176 1.128507 CAGTCACACACACACACACAC 59.871 52.381 0.00 0.00 0.00 3.82
1170 1178 1.720805 TCAGTCACACACACACACAC 58.279 50.000 0.00 0.00 0.00 3.82
1172 1180 2.033747 CGATTCAGTCACACACACACAC 60.034 50.000 0.00 0.00 0.00 3.82
1174 1182 2.469826 TCGATTCAGTCACACACACAC 58.530 47.619 0.00 0.00 0.00 3.82
1175 1183 2.100749 ACTCGATTCAGTCACACACACA 59.899 45.455 0.00 0.00 0.00 3.72
1176 1184 2.726760 GACTCGATTCAGTCACACACAC 59.273 50.000 0.00 0.00 42.25 3.82
1177 1185 2.604614 CGACTCGATTCAGTCACACACA 60.605 50.000 3.52 0.00 42.75 3.72
1178 1186 1.979469 CGACTCGATTCAGTCACACAC 59.021 52.381 3.52 0.00 42.75 3.82
1179 1187 1.877443 TCGACTCGATTCAGTCACACA 59.123 47.619 3.52 0.00 42.75 3.72
1180 1188 2.243407 GTCGACTCGATTCAGTCACAC 58.757 52.381 8.70 7.65 42.75 3.82
1184 1192 0.179197 TGCGTCGACTCGATTCAGTC 60.179 55.000 14.70 0.00 38.42 3.51
1220 1228 2.353704 CCCTCGTACTCTGCAATGACAA 60.354 50.000 0.00 0.00 0.00 3.18
1224 1232 1.148157 CGCCCTCGTACTCTGCAATG 61.148 60.000 0.00 0.00 0.00 2.82
1225 1233 1.141881 CGCCCTCGTACTCTGCAAT 59.858 57.895 0.00 0.00 0.00 3.56
1234 1242 2.758089 GCTTCGTCTCGCCCTCGTA 61.758 63.158 0.00 0.00 36.96 3.43
1418 1426 0.811281 GCAATGGAGTTACTGTGGGC 59.189 55.000 0.00 0.00 0.00 5.36
1420 1428 1.086696 CGGCAATGGAGTTACTGTGG 58.913 55.000 0.00 0.00 0.00 4.17
1421 1429 0.447801 GCGGCAATGGAGTTACTGTG 59.552 55.000 0.00 0.00 0.00 3.66
1423 1431 1.705337 CCGCGGCAATGGAGTTACTG 61.705 60.000 14.67 0.00 0.00 2.74
1424 1432 1.449601 CCGCGGCAATGGAGTTACT 60.450 57.895 14.67 0.00 0.00 2.24
1425 1433 3.098555 CCGCGGCAATGGAGTTAC 58.901 61.111 14.67 0.00 0.00 2.50
1442 1601 4.808364 GGAACTCTGATGTCTGAAGTATGC 59.192 45.833 0.00 0.00 0.00 3.14
1467 1626 2.144730 GCATCTATTCAGGCTGAGCAG 58.855 52.381 17.91 17.37 0.00 4.24
1468 1627 1.487558 TGCATCTATTCAGGCTGAGCA 59.512 47.619 19.19 19.19 0.00 4.26
1469 1628 2.251409 TGCATCTATTCAGGCTGAGC 57.749 50.000 17.91 16.26 0.00 4.26
1472 1631 5.587844 AGTTAACTTGCATCTATTCAGGCTG 59.412 40.000 8.58 8.58 0.00 4.85
1473 1632 5.749462 AGTTAACTTGCATCTATTCAGGCT 58.251 37.500 1.12 0.00 0.00 4.58
1474 1633 6.261118 CAAGTTAACTTGCATCTATTCAGGC 58.739 40.000 29.92 0.00 45.59 4.85
1497 1662 1.735700 GCGTCGATGGATCACAGAACA 60.736 52.381 6.79 0.00 0.00 3.18
1509 1674 1.515088 AGCTCGTTCTGCGTCGATG 60.515 57.895 0.00 0.00 42.13 3.84
1586 1751 1.999735 CACCATCACGACACGCTTTAT 59.000 47.619 0.00 0.00 0.00 1.40
1588 1753 0.531974 ACACCATCACGACACGCTTT 60.532 50.000 0.00 0.00 0.00 3.51
1609 1774 2.240612 GAAACATGGCCGTCTGCGAC 62.241 60.000 0.00 0.00 42.61 5.19
1626 1791 0.685097 CCTGTTTGTCCTCCTCGGAA 59.315 55.000 0.00 0.00 45.32 4.30
1662 7864 1.143073 AGTTTCTTGGACGGAGCCTTT 59.857 47.619 0.00 0.00 0.00 3.11
1681 7883 1.135139 ACGAACACCCAGATCGATCAG 59.865 52.381 26.47 18.71 44.30 2.90
1769 7971 4.025360 TGCATATTTCTTCAAGGCCACAT 58.975 39.130 5.01 0.00 0.00 3.21
1774 7976 6.369615 ACACAAAATGCATATTTCTTCAAGGC 59.630 34.615 0.00 0.00 35.50 4.35
1816 8018 2.104170 AGAAAAACTTCCCCGCAACAA 58.896 42.857 0.00 0.00 0.00 2.83
1826 8028 7.041780 TCAGTTCTCATACAGCAGAAAAACTTC 60.042 37.037 0.00 0.00 30.38 3.01
1902 8104 3.898517 GTTCAAGTAGGGAACTGTTGC 57.101 47.619 3.17 3.17 43.88 4.17
1939 8141 3.726557 TGATGATGCTTGGTTCCTTCT 57.273 42.857 0.00 0.00 0.00 2.85
2166 8371 8.924511 ATCAGTTTTTGAATTTGACCTAGAGA 57.075 30.769 0.00 0.00 39.77 3.10
2241 8450 7.345653 TGTGTTTTGAGATCCTATATGAGTCCT 59.654 37.037 0.00 0.00 0.00 3.85
2245 8454 9.605275 TTCTTGTGTTTTGAGATCCTATATGAG 57.395 33.333 0.00 0.00 0.00 2.90
2280 8489 2.030946 GTGCACCATCTAAAGACATCGC 59.969 50.000 5.22 0.00 0.00 4.58
2339 8673 7.057264 TGCACATACACTCTCTCTACTATCTT 58.943 38.462 0.00 0.00 0.00 2.40
2430 8764 4.003648 CTGTGGGATGTAGTCAAACTTCC 58.996 47.826 0.00 0.00 41.01 3.46
2465 8799 0.804989 CTTCAGGTCACGGGATTTGC 59.195 55.000 0.00 0.00 0.00 3.68
2582 8919 6.789268 TGAAATCTTGGGACCTCTTTATTCA 58.211 36.000 0.00 0.00 0.00 2.57
2630 8967 1.367346 TTCCATACCAGGTGGCTTCA 58.633 50.000 0.76 0.00 39.32 3.02
2631 8968 2.301346 CATTCCATACCAGGTGGCTTC 58.699 52.381 0.76 0.00 39.32 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.