Multiple sequence alignment - TraesCS3D01G342400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G342400 chr3D 100.000 2417 0 0 1 2417 455038405 455035989 0.000000e+00 4464.0
1 TraesCS3D01G342400 chr7B 86.180 1136 89 29 766 1856 661468909 661470021 0.000000e+00 1166.0
2 TraesCS3D01G342400 chr7B 90.974 698 39 4 750 1428 662311738 662311046 0.000000e+00 918.0
3 TraesCS3D01G342400 chr7B 90.085 706 50 8 749 1437 661716419 661717121 0.000000e+00 898.0
4 TraesCS3D01G342400 chr7B 90.370 675 46 9 769 1425 661998767 661999440 0.000000e+00 869.0
5 TraesCS3D01G342400 chr7B 89.505 667 50 8 769 1417 662010201 662009537 0.000000e+00 826.0
6 TraesCS3D01G342400 chr7B 88.484 686 54 13 766 1428 674194092 674194775 0.000000e+00 806.0
7 TraesCS3D01G342400 chr7B 82.534 521 40 20 1855 2326 661470058 661470576 6.220000e-111 411.0
8 TraesCS3D01G342400 chr7B 85.309 388 35 13 685 1058 661912788 661913167 4.880000e-102 381.0
9 TraesCS3D01G342400 chr7B 89.423 104 10 1 1489 1592 662310660 662310558 1.950000e-26 130.0
10 TraesCS3D01G342400 chr7B 84.337 83 10 2 2309 2390 661470591 661470671 7.160000e-11 78.7
11 TraesCS3D01G342400 chr7D 86.295 1058 79 24 766 1772 588252799 588253841 0.000000e+00 1090.0
12 TraesCS3D01G342400 chr7D 90.300 701 50 8 749 1432 588409043 588409742 0.000000e+00 902.0
13 TraesCS3D01G342400 chr7D 88.559 673 47 10 769 1421 588472007 588471345 0.000000e+00 789.0
14 TraesCS3D01G342400 chr7D 85.614 285 17 10 2034 2317 588254206 588254467 6.580000e-71 278.0
15 TraesCS3D01G342400 chr7D 92.517 147 11 0 804 950 588434089 588433943 6.770000e-51 211.0
16 TraesCS3D01G342400 chr7D 77.474 293 32 22 1772 2038 588253886 588254170 6.960000e-31 145.0
17 TraesCS3D01G342400 chr7A 89.811 687 49 4 766 1432 680244345 680245030 0.000000e+00 861.0
18 TraesCS3D01G342400 chr7A 89.381 678 55 8 766 1428 689252004 689252679 0.000000e+00 837.0
19 TraesCS3D01G342400 chr7A 89.450 673 47 14 769 1417 680264778 680264106 0.000000e+00 828.0
20 TraesCS3D01G342400 chr1B 87.776 499 39 8 1 489 89956834 89957320 4.510000e-157 564.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G342400 chr3D 455035989 455038405 2416 True 4464.000000 4464 100.000000 1 2417 1 chr3D.!!$R1 2416
1 TraesCS3D01G342400 chr7B 661716419 661717121 702 False 898.000000 898 90.085000 749 1437 1 chr7B.!!$F1 688
2 TraesCS3D01G342400 chr7B 661998767 661999440 673 False 869.000000 869 90.370000 769 1425 1 chr7B.!!$F3 656
3 TraesCS3D01G342400 chr7B 662009537 662010201 664 True 826.000000 826 89.505000 769 1417 1 chr7B.!!$R1 648
4 TraesCS3D01G342400 chr7B 674194092 674194775 683 False 806.000000 806 88.484000 766 1428 1 chr7B.!!$F4 662
5 TraesCS3D01G342400 chr7B 661468909 661470671 1762 False 551.900000 1166 84.350333 766 2390 3 chr7B.!!$F5 1624
6 TraesCS3D01G342400 chr7B 662310558 662311738 1180 True 524.000000 918 90.198500 750 1592 2 chr7B.!!$R2 842
7 TraesCS3D01G342400 chr7D 588409043 588409742 699 False 902.000000 902 90.300000 749 1432 1 chr7D.!!$F1 683
8 TraesCS3D01G342400 chr7D 588471345 588472007 662 True 789.000000 789 88.559000 769 1421 1 chr7D.!!$R2 652
9 TraesCS3D01G342400 chr7D 588252799 588254467 1668 False 504.333333 1090 83.127667 766 2317 3 chr7D.!!$F2 1551
10 TraesCS3D01G342400 chr7A 680244345 680245030 685 False 861.000000 861 89.811000 766 1432 1 chr7A.!!$F1 666
11 TraesCS3D01G342400 chr7A 689252004 689252679 675 False 837.000000 837 89.381000 766 1428 1 chr7A.!!$F2 662
12 TraesCS3D01G342400 chr7A 680264106 680264778 672 True 828.000000 828 89.450000 769 1417 1 chr7A.!!$R1 648

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
592 593 0.037734 TGAGAGAGCACGACCAGGTA 59.962 55.0 0.0 0.0 0.0 3.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2094 2709 0.248054 CGGGATCGTGGAAAAATGCG 60.248 55.0 0.0 0.0 0.0 4.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.850122 CTATCTCTTCGTGTGTGTGGA 57.150 47.619 0.00 0.00 0.00 4.02
21 22 4.377839 CTATCTCTTCGTGTGTGTGGAT 57.622 45.455 0.00 0.00 0.00 3.41
22 23 5.500645 CTATCTCTTCGTGTGTGTGGATA 57.499 43.478 0.00 0.00 0.00 2.59
23 24 3.850122 TCTCTTCGTGTGTGTGGATAG 57.150 47.619 0.00 0.00 0.00 2.08
24 25 2.492088 TCTCTTCGTGTGTGTGGATAGG 59.508 50.000 0.00 0.00 0.00 2.57
25 26 2.492088 CTCTTCGTGTGTGTGGATAGGA 59.508 50.000 0.00 0.00 0.00 2.94
26 27 2.894765 TCTTCGTGTGTGTGGATAGGAA 59.105 45.455 0.00 0.00 0.00 3.36
27 28 2.736144 TCGTGTGTGTGGATAGGAAC 57.264 50.000 0.00 0.00 0.00 3.62
28 29 1.964933 TCGTGTGTGTGGATAGGAACA 59.035 47.619 0.00 0.00 0.00 3.18
29 30 2.365941 TCGTGTGTGTGGATAGGAACAA 59.634 45.455 0.00 0.00 0.00 2.83
30 31 2.736721 CGTGTGTGTGGATAGGAACAAG 59.263 50.000 0.00 0.00 0.00 3.16
31 32 2.484264 GTGTGTGTGGATAGGAACAAGC 59.516 50.000 0.00 0.00 0.00 4.01
32 33 2.371841 TGTGTGTGGATAGGAACAAGCT 59.628 45.455 0.00 0.00 0.00 3.74
33 34 2.744202 GTGTGTGGATAGGAACAAGCTG 59.256 50.000 0.00 0.00 0.00 4.24
34 35 1.740025 GTGTGGATAGGAACAAGCTGC 59.260 52.381 0.00 0.00 0.00 5.25
35 36 1.340017 TGTGGATAGGAACAAGCTGCC 60.340 52.381 0.00 0.00 0.00 4.85
36 37 0.991146 TGGATAGGAACAAGCTGCCA 59.009 50.000 0.00 0.00 0.00 4.92
37 38 1.340017 TGGATAGGAACAAGCTGCCAC 60.340 52.381 0.00 0.00 0.00 5.01
38 39 1.009829 GATAGGAACAAGCTGCCACG 58.990 55.000 0.00 0.00 0.00 4.94
39 40 0.613260 ATAGGAACAAGCTGCCACGA 59.387 50.000 0.00 0.00 0.00 4.35
40 41 0.613260 TAGGAACAAGCTGCCACGAT 59.387 50.000 0.00 0.00 0.00 3.73
41 42 0.957395 AGGAACAAGCTGCCACGATG 60.957 55.000 0.00 0.00 0.00 3.84
42 43 1.154150 GAACAAGCTGCCACGATGC 60.154 57.895 0.00 0.00 0.00 3.91
43 44 2.839324 GAACAAGCTGCCACGATGCG 62.839 60.000 0.00 0.00 0.00 4.73
44 45 3.425713 CAAGCTGCCACGATGCGT 61.426 61.111 0.00 0.00 42.36 5.24
45 46 2.669569 AAGCTGCCACGATGCGTT 60.670 55.556 0.00 0.00 38.32 4.84
46 47 2.969806 AAGCTGCCACGATGCGTTG 61.970 57.895 0.00 0.00 38.32 4.10
47 48 4.465512 GCTGCCACGATGCGTTGG 62.466 66.667 0.00 0.00 38.32 3.77
48 49 4.465512 CTGCCACGATGCGTTGGC 62.466 66.667 13.76 13.76 46.12 4.52
50 51 4.465512 GCCACGATGCGTTGGCTG 62.466 66.667 13.43 0.00 44.26 4.85
51 52 2.741985 CCACGATGCGTTGGCTGA 60.742 61.111 0.00 0.00 38.32 4.26
52 53 2.324330 CCACGATGCGTTGGCTGAA 61.324 57.895 0.00 0.00 38.32 3.02
53 54 1.133253 CACGATGCGTTGGCTGAAG 59.867 57.895 0.00 0.00 38.32 3.02
54 55 2.034879 ACGATGCGTTGGCTGAAGG 61.035 57.895 0.00 0.00 36.35 3.46
55 56 2.034879 CGATGCGTTGGCTGAAGGT 61.035 57.895 0.00 0.00 40.82 3.50
56 57 0.739462 CGATGCGTTGGCTGAAGGTA 60.739 55.000 0.00 0.00 40.82 3.08
57 58 1.009829 GATGCGTTGGCTGAAGGTAG 58.990 55.000 0.00 0.00 40.82 3.18
58 59 1.026718 ATGCGTTGGCTGAAGGTAGC 61.027 55.000 0.00 0.00 42.94 3.58
59 60 1.376037 GCGTTGGCTGAAGGTAGCT 60.376 57.895 0.00 0.00 43.22 3.32
60 61 1.639298 GCGTTGGCTGAAGGTAGCTG 61.639 60.000 0.00 0.00 43.22 4.24
61 62 1.639298 CGTTGGCTGAAGGTAGCTGC 61.639 60.000 0.00 0.00 43.22 5.25
62 63 0.606401 GTTGGCTGAAGGTAGCTGCA 60.606 55.000 1.84 1.84 43.22 4.41
63 64 0.321919 TTGGCTGAAGGTAGCTGCAG 60.322 55.000 23.44 23.44 43.22 4.41
64 65 3.495543 GCTGAAGGTAGCTGCAGC 58.504 61.111 33.30 33.30 45.64 5.25
83 84 1.208614 GCATAGCGCTAGCCATTGC 59.791 57.895 23.37 21.76 46.67 3.56
93 94 4.643795 GCCATTGCTGCTACCTCA 57.356 55.556 0.00 0.00 33.53 3.86
94 95 3.106738 GCCATTGCTGCTACCTCAT 57.893 52.632 0.00 0.00 33.53 2.90
95 96 0.950116 GCCATTGCTGCTACCTCATC 59.050 55.000 0.00 0.00 33.53 2.92
96 97 1.224075 CCATTGCTGCTACCTCATCG 58.776 55.000 0.00 0.00 0.00 3.84
97 98 1.473965 CCATTGCTGCTACCTCATCGT 60.474 52.381 0.00 0.00 0.00 3.73
98 99 1.863454 CATTGCTGCTACCTCATCGTC 59.137 52.381 0.00 0.00 0.00 4.20
99 100 1.186200 TTGCTGCTACCTCATCGTCT 58.814 50.000 0.00 0.00 0.00 4.18
100 101 0.741326 TGCTGCTACCTCATCGTCTC 59.259 55.000 0.00 0.00 0.00 3.36
101 102 0.317436 GCTGCTACCTCATCGTCTCG 60.317 60.000 0.00 0.00 0.00 4.04
102 103 0.309302 CTGCTACCTCATCGTCTCGG 59.691 60.000 0.00 0.00 0.00 4.63
103 104 1.101635 TGCTACCTCATCGTCTCGGG 61.102 60.000 0.00 0.00 0.00 5.14
104 105 1.655329 CTACCTCATCGTCTCGGGC 59.345 63.158 0.00 0.00 0.00 6.13
105 106 1.077285 TACCTCATCGTCTCGGGCA 60.077 57.895 0.00 0.00 0.00 5.36
106 107 1.101635 TACCTCATCGTCTCGGGCAG 61.102 60.000 0.00 0.00 0.00 4.85
107 108 2.279120 CTCATCGTCTCGGGCAGC 60.279 66.667 0.00 0.00 0.00 5.25
108 109 3.781770 CTCATCGTCTCGGGCAGCC 62.782 68.421 1.26 1.26 0.00 4.85
112 113 4.554363 CGTCTCGGGCAGCCGTAG 62.554 72.222 5.00 5.27 34.52 3.51
113 114 4.874977 GTCTCGGGCAGCCGTAGC 62.875 72.222 5.00 0.00 40.32 3.58
147 148 4.704833 GGAGTCCGCCTGCAGCAA 62.705 66.667 8.66 0.00 44.04 3.91
148 149 3.123620 GAGTCCGCCTGCAGCAAG 61.124 66.667 8.66 0.95 44.04 4.01
149 150 3.596066 GAGTCCGCCTGCAGCAAGA 62.596 63.158 8.66 0.45 44.04 3.02
150 151 3.426568 GTCCGCCTGCAGCAAGAC 61.427 66.667 8.66 10.17 44.04 3.01
151 152 3.939939 TCCGCCTGCAGCAAGACA 61.940 61.111 8.66 0.00 44.04 3.41
152 153 2.979676 CCGCCTGCAGCAAGACAA 60.980 61.111 8.66 0.00 44.04 3.18
153 154 2.559840 CGCCTGCAGCAAGACAAG 59.440 61.111 8.66 0.00 44.04 3.16
154 155 2.256591 CGCCTGCAGCAAGACAAGT 61.257 57.895 8.66 0.00 44.04 3.16
155 156 1.578423 GCCTGCAGCAAGACAAGTC 59.422 57.895 8.66 0.00 42.97 3.01
156 157 1.864862 CCTGCAGCAAGACAAGTCG 59.135 57.895 8.66 0.00 34.09 4.18
157 158 1.572085 CCTGCAGCAAGACAAGTCGG 61.572 60.000 8.66 0.00 34.09 4.79
158 159 0.601046 CTGCAGCAAGACAAGTCGGA 60.601 55.000 0.00 0.00 34.09 4.55
159 160 0.601046 TGCAGCAAGACAAGTCGGAG 60.601 55.000 0.00 0.00 34.09 4.63
160 161 1.294659 GCAGCAAGACAAGTCGGAGG 61.295 60.000 0.00 0.00 34.09 4.30
161 162 0.671781 CAGCAAGACAAGTCGGAGGG 60.672 60.000 0.00 0.00 34.09 4.30
162 163 2.035442 GCAAGACAAGTCGGAGGGC 61.035 63.158 0.00 0.00 34.09 5.19
163 164 1.738099 CAAGACAAGTCGGAGGGCG 60.738 63.158 0.00 0.00 34.09 6.13
164 165 3.591254 AAGACAAGTCGGAGGGCGC 62.591 63.158 0.00 0.00 34.09 6.53
174 175 2.989824 GAGGGCGCCGCTATCCTA 60.990 66.667 22.54 0.00 0.00 2.94
175 176 2.283966 AGGGCGCCGCTATCCTAT 60.284 61.111 22.54 0.00 0.00 2.57
176 177 2.184579 GGGCGCCGCTATCCTATC 59.815 66.667 22.54 0.00 0.00 2.08
177 178 2.202623 GGCGCCGCTATCCTATCG 60.203 66.667 12.58 0.00 0.00 2.92
178 179 2.567049 GCGCCGCTATCCTATCGT 59.433 61.111 0.00 0.00 0.00 3.73
179 180 1.801913 GCGCCGCTATCCTATCGTG 60.802 63.158 0.00 0.00 0.00 4.35
180 181 1.579932 CGCCGCTATCCTATCGTGT 59.420 57.895 0.00 0.00 0.00 4.49
181 182 0.454620 CGCCGCTATCCTATCGTGTC 60.455 60.000 0.00 0.00 0.00 3.67
182 183 0.882474 GCCGCTATCCTATCGTGTCT 59.118 55.000 0.00 0.00 0.00 3.41
183 184 1.135632 GCCGCTATCCTATCGTGTCTC 60.136 57.143 0.00 0.00 0.00 3.36
184 185 1.128878 CCGCTATCCTATCGTGTCTCG 59.871 57.143 0.00 0.00 41.41 4.04
185 186 1.799403 CGCTATCCTATCGTGTCTCGT 59.201 52.381 0.00 0.00 40.80 4.18
186 187 2.159814 CGCTATCCTATCGTGTCTCGTC 60.160 54.545 0.00 0.00 40.80 4.20
187 188 2.159814 GCTATCCTATCGTGTCTCGTCG 60.160 54.545 0.00 0.00 40.80 5.12
188 189 1.950828 ATCCTATCGTGTCTCGTCGT 58.049 50.000 0.00 0.00 40.80 4.34
189 190 1.284657 TCCTATCGTGTCTCGTCGTC 58.715 55.000 0.00 0.00 40.80 4.20
190 191 0.043224 CCTATCGTGTCTCGTCGTCG 60.043 60.000 0.00 0.00 40.80 5.12
191 192 0.644331 CTATCGTGTCTCGTCGTCGT 59.356 55.000 1.33 0.00 40.80 4.34
192 193 1.060266 CTATCGTGTCTCGTCGTCGTT 59.940 52.381 1.33 0.00 40.80 3.85
193 194 0.452287 ATCGTGTCTCGTCGTCGTTG 60.452 55.000 1.33 0.00 40.80 4.10
194 195 1.368493 CGTGTCTCGTCGTCGTTGT 60.368 57.895 1.33 0.00 38.33 3.32
195 196 0.111134 CGTGTCTCGTCGTCGTTGTA 60.111 55.000 1.33 0.00 38.33 2.41
196 197 1.589076 GTGTCTCGTCGTCGTTGTAG 58.411 55.000 1.33 0.00 38.33 2.74
197 198 0.110509 TGTCTCGTCGTCGTTGTAGC 60.111 55.000 1.33 0.00 38.33 3.58
198 199 1.119015 GTCTCGTCGTCGTTGTAGCG 61.119 60.000 1.33 0.00 38.33 4.26
199 200 2.486322 CTCGTCGTCGTTGTAGCGC 61.486 63.158 0.00 0.00 38.33 5.92
200 201 3.530104 CGTCGTCGTTGTAGCGCC 61.530 66.667 2.29 0.00 0.00 6.53
201 202 2.429571 GTCGTCGTTGTAGCGCCA 60.430 61.111 2.29 0.00 0.00 5.69
202 203 2.017783 GTCGTCGTTGTAGCGCCAA 61.018 57.895 2.29 0.00 0.00 4.52
203 204 1.300003 TCGTCGTTGTAGCGCCAAA 60.300 52.632 2.29 0.00 0.00 3.28
204 205 0.668096 TCGTCGTTGTAGCGCCAAAT 60.668 50.000 2.29 0.00 0.00 2.32
205 206 0.518355 CGTCGTTGTAGCGCCAAATG 60.518 55.000 2.29 1.60 0.00 2.32
206 207 0.793861 GTCGTTGTAGCGCCAAATGA 59.206 50.000 2.29 4.33 0.00 2.57
207 208 1.075542 TCGTTGTAGCGCCAAATGAG 58.924 50.000 2.29 0.00 0.00 2.90
208 209 1.075542 CGTTGTAGCGCCAAATGAGA 58.924 50.000 2.29 0.00 0.00 3.27
209 210 1.061131 CGTTGTAGCGCCAAATGAGAG 59.939 52.381 2.29 0.00 0.00 3.20
210 211 1.398390 GTTGTAGCGCCAAATGAGAGG 59.602 52.381 2.29 0.00 0.00 3.69
211 212 0.107703 TGTAGCGCCAAATGAGAGGG 60.108 55.000 2.29 0.00 0.00 4.30
212 213 0.815615 GTAGCGCCAAATGAGAGGGG 60.816 60.000 2.29 0.00 40.51 4.79
215 216 2.044946 GCCAAATGAGAGGGGCGT 60.045 61.111 0.00 0.00 36.58 5.68
216 217 1.223487 GCCAAATGAGAGGGGCGTA 59.777 57.895 0.00 0.00 36.58 4.42
217 218 1.095807 GCCAAATGAGAGGGGCGTAC 61.096 60.000 0.00 0.00 36.58 3.67
218 219 0.541863 CCAAATGAGAGGGGCGTACT 59.458 55.000 0.00 0.00 0.00 2.73
219 220 1.473434 CCAAATGAGAGGGGCGTACTC 60.473 57.143 0.00 0.00 35.20 2.59
220 221 1.207089 CAAATGAGAGGGGCGTACTCA 59.793 52.381 0.00 0.00 43.25 3.41
221 222 0.824759 AATGAGAGGGGCGTACTCAC 59.175 55.000 0.00 1.80 42.18 3.51
230 231 4.916412 CGTACTCACGGCCGATAG 57.084 61.111 35.90 28.41 44.59 2.08
231 232 1.370172 CGTACTCACGGCCGATAGC 60.370 63.158 35.90 15.01 44.59 2.97
241 242 3.460648 GCCGATAGCCACTCAACTT 57.539 52.632 0.00 0.00 34.35 2.66
242 243 1.009829 GCCGATAGCCACTCAACTTG 58.990 55.000 0.00 0.00 34.35 3.16
243 244 1.676014 GCCGATAGCCACTCAACTTGT 60.676 52.381 0.00 0.00 34.35 3.16
244 245 2.699954 CCGATAGCCACTCAACTTGTT 58.300 47.619 0.00 0.00 0.00 2.83
245 246 3.074412 CCGATAGCCACTCAACTTGTTT 58.926 45.455 0.00 0.00 0.00 2.83
246 247 3.125316 CCGATAGCCACTCAACTTGTTTC 59.875 47.826 0.00 0.00 0.00 2.78
247 248 3.125316 CGATAGCCACTCAACTTGTTTCC 59.875 47.826 0.00 0.00 0.00 3.13
248 249 1.692411 AGCCACTCAACTTGTTTCCC 58.308 50.000 0.00 0.00 0.00 3.97
249 250 0.673985 GCCACTCAACTTGTTTCCCC 59.326 55.000 0.00 0.00 0.00 4.81
250 251 1.754201 GCCACTCAACTTGTTTCCCCT 60.754 52.381 0.00 0.00 0.00 4.79
251 252 2.666317 CCACTCAACTTGTTTCCCCTT 58.334 47.619 0.00 0.00 0.00 3.95
252 253 2.623416 CCACTCAACTTGTTTCCCCTTC 59.377 50.000 0.00 0.00 0.00 3.46
253 254 2.623416 CACTCAACTTGTTTCCCCTTCC 59.377 50.000 0.00 0.00 0.00 3.46
254 255 2.239400 CTCAACTTGTTTCCCCTTCCC 58.761 52.381 0.00 0.00 0.00 3.97
255 256 1.856920 TCAACTTGTTTCCCCTTCCCT 59.143 47.619 0.00 0.00 0.00 4.20
256 257 2.158519 TCAACTTGTTTCCCCTTCCCTC 60.159 50.000 0.00 0.00 0.00 4.30
257 258 1.529744 ACTTGTTTCCCCTTCCCTCA 58.470 50.000 0.00 0.00 0.00 3.86
258 259 1.856920 ACTTGTTTCCCCTTCCCTCAA 59.143 47.619 0.00 0.00 0.00 3.02
259 260 2.246327 ACTTGTTTCCCCTTCCCTCAAA 59.754 45.455 0.00 0.00 0.00 2.69
260 261 3.116746 ACTTGTTTCCCCTTCCCTCAAAT 60.117 43.478 0.00 0.00 0.00 2.32
261 262 3.169512 TGTTTCCCCTTCCCTCAAATC 57.830 47.619 0.00 0.00 0.00 2.17
262 263 2.448961 TGTTTCCCCTTCCCTCAAATCA 59.551 45.455 0.00 0.00 0.00 2.57
263 264 3.116939 TGTTTCCCCTTCCCTCAAATCAA 60.117 43.478 0.00 0.00 0.00 2.57
264 265 4.096681 GTTTCCCCTTCCCTCAAATCAAT 58.903 43.478 0.00 0.00 0.00 2.57
265 266 4.418395 TTCCCCTTCCCTCAAATCAATT 57.582 40.909 0.00 0.00 0.00 2.32
266 267 3.981212 TCCCCTTCCCTCAAATCAATTC 58.019 45.455 0.00 0.00 0.00 2.17
267 268 3.033909 CCCCTTCCCTCAAATCAATTCC 58.966 50.000 0.00 0.00 0.00 3.01
268 269 3.566332 CCCCTTCCCTCAAATCAATTCCA 60.566 47.826 0.00 0.00 0.00 3.53
269 270 3.703052 CCCTTCCCTCAAATCAATTCCAG 59.297 47.826 0.00 0.00 0.00 3.86
270 271 3.131755 CCTTCCCTCAAATCAATTCCAGC 59.868 47.826 0.00 0.00 0.00 4.85
271 272 2.738743 TCCCTCAAATCAATTCCAGCC 58.261 47.619 0.00 0.00 0.00 4.85
272 273 2.042842 TCCCTCAAATCAATTCCAGCCA 59.957 45.455 0.00 0.00 0.00 4.75
273 274 3.036091 CCCTCAAATCAATTCCAGCCAT 58.964 45.455 0.00 0.00 0.00 4.40
274 275 3.181469 CCCTCAAATCAATTCCAGCCATG 60.181 47.826 0.00 0.00 0.00 3.66
275 276 3.702548 CCTCAAATCAATTCCAGCCATGA 59.297 43.478 0.00 0.00 0.00 3.07
276 277 4.202121 CCTCAAATCAATTCCAGCCATGAG 60.202 45.833 0.00 0.00 33.36 2.90
277 278 3.131577 TCAAATCAATTCCAGCCATGAGC 59.868 43.478 0.00 0.00 44.25 4.26
286 287 2.899339 GCCATGAGCGCCTCCTTC 60.899 66.667 2.29 0.00 0.00 3.46
287 288 2.906458 CCATGAGCGCCTCCTTCT 59.094 61.111 2.29 0.00 0.00 2.85
288 289 2.032860 GCCATGAGCGCCTCCTTCTA 62.033 60.000 2.29 0.00 0.00 2.10
289 290 0.249657 CCATGAGCGCCTCCTTCTAC 60.250 60.000 2.29 0.00 0.00 2.59
290 291 0.461548 CATGAGCGCCTCCTTCTACA 59.538 55.000 2.29 0.00 0.00 2.74
291 292 1.134699 CATGAGCGCCTCCTTCTACAA 60.135 52.381 2.29 0.00 0.00 2.41
292 293 0.246635 TGAGCGCCTCCTTCTACAAC 59.753 55.000 2.29 0.00 0.00 3.32
293 294 0.533032 GAGCGCCTCCTTCTACAACT 59.467 55.000 2.29 0.00 0.00 3.16
294 295 0.533032 AGCGCCTCCTTCTACAACTC 59.467 55.000 2.29 0.00 0.00 3.01
295 296 0.460459 GCGCCTCCTTCTACAACTCC 60.460 60.000 0.00 0.00 0.00 3.85
296 297 0.179134 CGCCTCCTTCTACAACTCCG 60.179 60.000 0.00 0.00 0.00 4.63
297 298 0.175989 GCCTCCTTCTACAACTCCGG 59.824 60.000 0.00 0.00 0.00 5.14
298 299 0.175989 CCTCCTTCTACAACTCCGGC 59.824 60.000 0.00 0.00 0.00 6.13
299 300 0.179134 CTCCTTCTACAACTCCGGCG 60.179 60.000 0.00 0.00 0.00 6.46
300 301 0.609957 TCCTTCTACAACTCCGGCGA 60.610 55.000 9.30 0.00 0.00 5.54
301 302 0.245539 CCTTCTACAACTCCGGCGAA 59.754 55.000 9.30 0.00 0.00 4.70
302 303 1.630148 CTTCTACAACTCCGGCGAAG 58.370 55.000 9.30 0.00 0.00 3.79
303 304 0.245539 TTCTACAACTCCGGCGAAGG 59.754 55.000 9.30 0.00 0.00 3.46
304 305 1.153628 CTACAACTCCGGCGAAGGG 60.154 63.158 9.30 0.00 0.00 3.95
305 306 2.573609 CTACAACTCCGGCGAAGGGG 62.574 65.000 9.30 0.00 37.90 4.79
306 307 3.702048 CAACTCCGGCGAAGGGGA 61.702 66.667 9.30 0.00 35.22 4.81
307 308 2.926242 AACTCCGGCGAAGGGGAA 60.926 61.111 9.30 0.00 35.22 3.97
308 309 2.522367 AACTCCGGCGAAGGGGAAA 61.522 57.895 9.30 0.00 35.22 3.13
309 310 2.059345 AACTCCGGCGAAGGGGAAAA 62.059 55.000 9.30 0.00 35.22 2.29
310 311 1.745489 CTCCGGCGAAGGGGAAAAG 60.745 63.158 9.30 0.00 32.01 2.27
311 312 3.440415 CCGGCGAAGGGGAAAAGC 61.440 66.667 9.30 0.00 0.00 3.51
312 313 2.359975 CGGCGAAGGGGAAAAGCT 60.360 61.111 0.00 0.00 0.00 3.74
313 314 2.399356 CGGCGAAGGGGAAAAGCTC 61.399 63.158 0.00 0.00 0.00 4.09
314 315 1.303317 GGCGAAGGGGAAAAGCTCA 60.303 57.895 0.00 0.00 0.00 4.26
315 316 1.587043 GGCGAAGGGGAAAAGCTCAC 61.587 60.000 0.00 0.00 0.00 3.51
316 317 0.606673 GCGAAGGGGAAAAGCTCACT 60.607 55.000 0.00 0.00 0.00 3.41
317 318 1.443802 CGAAGGGGAAAAGCTCACTC 58.556 55.000 0.00 0.00 0.00 3.51
318 319 1.827681 GAAGGGGAAAAGCTCACTCC 58.172 55.000 0.00 0.00 0.00 3.85
319 320 1.073923 GAAGGGGAAAAGCTCACTCCA 59.926 52.381 10.05 0.00 0.00 3.86
320 321 0.402121 AGGGGAAAAGCTCACTCCAC 59.598 55.000 10.05 6.87 32.35 4.02
321 322 0.609406 GGGGAAAAGCTCACTCCACC 60.609 60.000 10.05 5.99 0.00 4.61
322 323 0.402121 GGGAAAAGCTCACTCCACCT 59.598 55.000 10.05 0.00 0.00 4.00
323 324 1.611936 GGGAAAAGCTCACTCCACCTC 60.612 57.143 10.05 0.00 0.00 3.85
324 325 1.349357 GGAAAAGCTCACTCCACCTCT 59.651 52.381 4.26 0.00 0.00 3.69
325 326 2.614229 GGAAAAGCTCACTCCACCTCTC 60.614 54.545 4.26 0.00 0.00 3.20
326 327 0.605589 AAAGCTCACTCCACCTCTCG 59.394 55.000 0.00 0.00 0.00 4.04
327 328 1.254284 AAGCTCACTCCACCTCTCGG 61.254 60.000 0.00 0.00 0.00 4.63
328 329 1.679305 GCTCACTCCACCTCTCGGA 60.679 63.158 0.00 0.00 0.00 4.55
329 330 1.040339 GCTCACTCCACCTCTCGGAT 61.040 60.000 0.00 0.00 0.00 4.18
330 331 0.743688 CTCACTCCACCTCTCGGATG 59.256 60.000 0.00 0.00 0.00 3.51
331 332 0.684479 TCACTCCACCTCTCGGATGG 60.684 60.000 0.00 0.00 34.62 3.51
332 333 0.684479 CACTCCACCTCTCGGATGGA 60.684 60.000 4.51 1.66 37.82 3.41
333 334 2.424474 CTCCACCTCTCGGATGGAG 58.576 63.158 10.17 10.17 44.54 3.86
334 335 1.743321 CTCCACCTCTCGGATGGAGC 61.743 65.000 11.35 0.00 44.28 4.70
335 336 2.415010 CACCTCTCGGATGGAGCG 59.585 66.667 4.51 0.00 42.82 5.03
336 337 3.532155 ACCTCTCGGATGGAGCGC 61.532 66.667 0.00 0.00 42.82 5.92
337 338 3.222855 CCTCTCGGATGGAGCGCT 61.223 66.667 11.27 11.27 42.82 5.92
338 339 2.334653 CTCTCGGATGGAGCGCTC 59.665 66.667 29.38 29.38 42.82 5.03
339 340 3.534970 CTCTCGGATGGAGCGCTCG 62.535 68.421 29.81 19.43 42.82 5.03
340 341 4.637489 CTCGGATGGAGCGCTCGG 62.637 72.222 29.81 16.27 35.63 4.63
342 343 4.207281 CGGATGGAGCGCTCGGAA 62.207 66.667 29.81 18.68 0.00 4.30
343 344 2.279784 GGATGGAGCGCTCGGAAG 60.280 66.667 29.81 0.00 0.00 3.46
344 345 2.279784 GATGGAGCGCTCGGAAGG 60.280 66.667 29.81 0.00 0.00 3.46
345 346 3.077556 ATGGAGCGCTCGGAAGGT 61.078 61.111 29.81 9.81 0.00 3.50
346 347 3.376935 ATGGAGCGCTCGGAAGGTG 62.377 63.158 29.81 0.00 0.00 4.00
347 348 4.821589 GGAGCGCTCGGAAGGTGG 62.822 72.222 29.81 0.00 0.00 4.61
348 349 4.821589 GAGCGCTCGGAAGGTGGG 62.822 72.222 23.61 0.00 0.00 4.61
351 352 3.691342 CGCTCGGAAGGTGGGTCA 61.691 66.667 0.00 0.00 0.00 4.02
352 353 2.266055 GCTCGGAAGGTGGGTCAG 59.734 66.667 0.00 0.00 0.00 3.51
353 354 2.266055 CTCGGAAGGTGGGTCAGC 59.734 66.667 0.00 0.00 0.00 4.26
354 355 3.649277 CTCGGAAGGTGGGTCAGCG 62.649 68.421 0.00 0.00 36.92 5.18
355 356 4.760047 CGGAAGGTGGGTCAGCGG 62.760 72.222 0.00 0.00 36.92 5.52
356 357 3.637273 GGAAGGTGGGTCAGCGGT 61.637 66.667 0.00 0.00 36.92 5.68
357 358 2.358737 GAAGGTGGGTCAGCGGTG 60.359 66.667 8.67 8.67 36.92 4.94
358 359 3.901797 GAAGGTGGGTCAGCGGTGG 62.902 68.421 15.67 0.00 36.92 4.61
377 378 3.848142 CGACACGAGTTGGAGCAG 58.152 61.111 0.00 0.00 0.00 4.24
378 379 1.285950 CGACACGAGTTGGAGCAGA 59.714 57.895 0.00 0.00 0.00 4.26
379 380 0.730834 CGACACGAGTTGGAGCAGAG 60.731 60.000 0.00 0.00 0.00 3.35
380 381 0.389166 GACACGAGTTGGAGCAGAGG 60.389 60.000 0.00 0.00 0.00 3.69
381 382 1.739562 CACGAGTTGGAGCAGAGGC 60.740 63.158 0.00 0.00 41.61 4.70
409 410 4.821589 GAGTTGGAGCGGAGGCGG 62.822 72.222 0.00 0.00 46.35 6.13
506 507 4.200283 GCGAGAGAGGCGGAGGTG 62.200 72.222 0.00 0.00 0.00 4.00
507 508 3.522731 CGAGAGAGGCGGAGGTGG 61.523 72.222 0.00 0.00 0.00 4.61
508 509 3.844090 GAGAGAGGCGGAGGTGGC 61.844 72.222 0.00 0.00 0.00 5.01
526 527 4.647615 CGGCGCGAGGGGTATGAG 62.648 72.222 12.10 0.00 0.00 2.90
527 528 4.301027 GGCGCGAGGGGTATGAGG 62.301 72.222 12.10 0.00 0.00 3.86
528 529 3.224324 GCGCGAGGGGTATGAGGA 61.224 66.667 12.10 0.00 0.00 3.71
529 530 2.728817 CGCGAGGGGTATGAGGAC 59.271 66.667 0.00 0.00 0.00 3.85
530 531 2.728817 GCGAGGGGTATGAGGACG 59.271 66.667 0.00 0.00 0.00 4.79
531 532 1.826921 GCGAGGGGTATGAGGACGA 60.827 63.158 0.00 0.00 0.00 4.20
532 533 1.389609 GCGAGGGGTATGAGGACGAA 61.390 60.000 0.00 0.00 0.00 3.85
533 534 0.669077 CGAGGGGTATGAGGACGAAG 59.331 60.000 0.00 0.00 0.00 3.79
534 535 1.041437 GAGGGGTATGAGGACGAAGG 58.959 60.000 0.00 0.00 0.00 3.46
535 536 0.398664 AGGGGTATGAGGACGAAGGG 60.399 60.000 0.00 0.00 0.00 3.95
536 537 1.446366 GGGTATGAGGACGAAGGGC 59.554 63.158 0.00 0.00 0.00 5.19
578 579 4.891566 AACGCTAGCGGTTGAGAG 57.108 55.556 37.66 11.11 44.69 3.20
579 580 2.264124 AACGCTAGCGGTTGAGAGA 58.736 52.632 37.66 0.00 44.69 3.10
580 581 0.171455 AACGCTAGCGGTTGAGAGAG 59.829 55.000 37.66 9.61 44.69 3.20
581 582 1.587613 CGCTAGCGGTTGAGAGAGC 60.588 63.158 29.29 0.00 35.56 4.09
582 583 1.513158 GCTAGCGGTTGAGAGAGCA 59.487 57.895 0.00 0.00 0.00 4.26
583 584 0.804156 GCTAGCGGTTGAGAGAGCAC 60.804 60.000 0.00 0.00 0.00 4.40
584 585 0.524392 CTAGCGGTTGAGAGAGCACG 60.524 60.000 0.00 0.00 0.00 5.34
585 586 0.958876 TAGCGGTTGAGAGAGCACGA 60.959 55.000 0.00 0.00 0.00 4.35
586 587 2.089349 GCGGTTGAGAGAGCACGAC 61.089 63.158 0.00 0.00 0.00 4.34
587 588 1.444553 CGGTTGAGAGAGCACGACC 60.445 63.158 0.00 0.00 36.22 4.79
588 589 1.666011 GGTTGAGAGAGCACGACCA 59.334 57.895 0.00 0.00 38.58 4.02
589 590 0.389166 GGTTGAGAGAGCACGACCAG 60.389 60.000 0.00 0.00 38.58 4.00
590 591 0.389166 GTTGAGAGAGCACGACCAGG 60.389 60.000 0.00 0.00 0.00 4.45
591 592 0.827925 TTGAGAGAGCACGACCAGGT 60.828 55.000 0.00 0.00 0.00 4.00
592 593 0.037734 TGAGAGAGCACGACCAGGTA 59.962 55.000 0.00 0.00 0.00 3.08
593 594 0.452585 GAGAGAGCACGACCAGGTAC 59.547 60.000 0.00 0.00 0.00 3.34
594 595 0.966370 AGAGAGCACGACCAGGTACC 60.966 60.000 2.73 2.73 0.00 3.34
595 596 1.228769 AGAGCACGACCAGGTACCA 60.229 57.895 15.94 0.00 0.00 3.25
596 597 1.080025 GAGCACGACCAGGTACCAC 60.080 63.158 15.94 1.58 0.00 4.16
597 598 2.047560 GCACGACCAGGTACCACC 60.048 66.667 15.94 0.00 38.99 4.61
606 607 4.404098 GGTACCACCTGGCCCGTG 62.404 72.222 7.15 12.14 39.32 4.94
626 627 3.257561 CACAGCGATTCGGGCGAG 61.258 66.667 8.34 0.00 35.00 5.03
627 628 3.449227 ACAGCGATTCGGGCGAGA 61.449 61.111 8.34 0.00 35.00 4.04
628 629 2.028190 CAGCGATTCGGGCGAGAT 59.972 61.111 8.34 0.00 35.00 2.75
629 630 2.028190 AGCGATTCGGGCGAGATG 59.972 61.111 8.34 0.00 35.00 2.90
630 631 2.279517 GCGATTCGGGCGAGATGT 60.280 61.111 8.34 0.00 0.00 3.06
631 632 2.589492 GCGATTCGGGCGAGATGTG 61.589 63.158 8.34 0.00 0.00 3.21
632 633 2.589492 CGATTCGGGCGAGATGTGC 61.589 63.158 0.00 0.00 0.00 4.57
633 634 2.586079 ATTCGGGCGAGATGTGCG 60.586 61.111 0.00 0.00 0.00 5.34
634 635 4.812476 TTCGGGCGAGATGTGCGG 62.812 66.667 0.00 0.00 0.00 5.69
640 641 4.147449 CGAGATGTGCGGCCAGGA 62.147 66.667 2.24 0.00 0.00 3.86
641 642 2.202987 GAGATGTGCGGCCAGGAG 60.203 66.667 2.24 0.00 0.00 3.69
642 643 4.479993 AGATGTGCGGCCAGGAGC 62.480 66.667 2.24 0.00 42.60 4.70
663 664 2.584970 CCGCTCGCGATGCCTAAA 60.585 61.111 10.36 0.00 42.83 1.85
664 665 2.171079 CCGCTCGCGATGCCTAAAA 61.171 57.895 10.36 0.00 42.83 1.52
665 666 1.701545 CCGCTCGCGATGCCTAAAAA 61.702 55.000 10.36 0.00 42.83 1.94
666 667 0.315382 CGCTCGCGATGCCTAAAAAG 60.315 55.000 10.36 0.00 42.83 2.27
667 668 0.727398 GCTCGCGATGCCTAAAAAGT 59.273 50.000 10.36 0.00 0.00 2.66
668 669 1.529826 GCTCGCGATGCCTAAAAAGTG 60.530 52.381 10.36 0.00 0.00 3.16
669 670 0.446222 TCGCGATGCCTAAAAAGTGC 59.554 50.000 3.71 0.00 0.00 4.40
670 671 0.857311 CGCGATGCCTAAAAAGTGCG 60.857 55.000 0.00 0.00 38.28 5.34
671 672 0.168128 GCGATGCCTAAAAAGTGCGT 59.832 50.000 0.00 0.00 0.00 5.24
672 673 1.395608 GCGATGCCTAAAAAGTGCGTA 59.604 47.619 0.00 0.00 0.00 4.42
673 674 2.031683 GCGATGCCTAAAAAGTGCGTAT 59.968 45.455 0.00 0.00 0.00 3.06
674 675 3.607439 CGATGCCTAAAAAGTGCGTATG 58.393 45.455 0.00 0.00 0.00 2.39
675 676 2.911819 TGCCTAAAAAGTGCGTATGC 57.088 45.000 0.00 0.00 43.20 3.14
688 689 3.698029 GCGTATGCATTTCAGGTTGAT 57.302 42.857 3.54 0.00 42.15 2.57
689 690 4.811555 GCGTATGCATTTCAGGTTGATA 57.188 40.909 3.54 0.00 42.15 2.15
690 691 5.362556 GCGTATGCATTTCAGGTTGATAT 57.637 39.130 3.54 0.00 42.15 1.63
691 692 5.762045 GCGTATGCATTTCAGGTTGATATT 58.238 37.500 3.54 0.00 42.15 1.28
692 693 6.208644 GCGTATGCATTTCAGGTTGATATTT 58.791 36.000 3.54 0.00 42.15 1.40
693 694 6.360681 GCGTATGCATTTCAGGTTGATATTTC 59.639 38.462 3.54 0.00 42.15 2.17
694 695 6.574832 CGTATGCATTTCAGGTTGATATTTCG 59.425 38.462 3.54 0.00 0.00 3.46
695 696 5.247507 TGCATTTCAGGTTGATATTTCGG 57.752 39.130 0.00 0.00 0.00 4.30
696 697 4.704540 TGCATTTCAGGTTGATATTTCGGT 59.295 37.500 0.00 0.00 0.00 4.69
697 698 5.883115 TGCATTTCAGGTTGATATTTCGGTA 59.117 36.000 0.00 0.00 0.00 4.02
698 699 6.545666 TGCATTTCAGGTTGATATTTCGGTAT 59.454 34.615 0.00 0.00 0.00 2.73
699 700 6.857964 GCATTTCAGGTTGATATTTCGGTATG 59.142 38.462 0.00 0.00 0.00 2.39
700 701 6.371809 TTTCAGGTTGATATTTCGGTATGC 57.628 37.500 0.00 0.00 0.00 3.14
701 702 4.055360 TCAGGTTGATATTTCGGTATGCG 58.945 43.478 0.00 0.00 0.00 4.73
702 703 2.806244 AGGTTGATATTTCGGTATGCGC 59.194 45.455 0.00 0.00 0.00 6.09
703 704 2.411031 GGTTGATATTTCGGTATGCGCG 60.411 50.000 0.00 0.00 0.00 6.86
704 705 0.787787 TGATATTTCGGTATGCGCGC 59.212 50.000 27.26 27.26 0.00 6.86
705 706 0.246757 GATATTTCGGTATGCGCGCG 60.247 55.000 28.44 28.44 0.00 6.86
706 707 0.942410 ATATTTCGGTATGCGCGCGT 60.942 50.000 32.35 30.61 0.00 6.01
707 708 1.813212 TATTTCGGTATGCGCGCGTG 61.813 55.000 34.70 18.93 0.00 5.34
719 720 3.055719 CGCGTGGCTGAAACCCAT 61.056 61.111 0.00 0.00 34.34 4.00
720 721 2.877691 GCGTGGCTGAAACCCATC 59.122 61.111 0.00 0.00 34.34 3.51
721 722 1.675641 GCGTGGCTGAAACCCATCT 60.676 57.895 0.00 0.00 34.34 2.90
722 723 1.926511 GCGTGGCTGAAACCCATCTG 61.927 60.000 0.00 0.00 34.34 2.90
723 724 0.606401 CGTGGCTGAAACCCATCTGT 60.606 55.000 0.00 0.00 34.34 3.41
724 725 1.168714 GTGGCTGAAACCCATCTGTC 58.831 55.000 0.00 0.00 34.34 3.51
725 726 1.067295 TGGCTGAAACCCATCTGTCT 58.933 50.000 0.00 0.00 0.00 3.41
726 727 1.425066 TGGCTGAAACCCATCTGTCTT 59.575 47.619 0.00 0.00 0.00 3.01
727 728 2.087646 GGCTGAAACCCATCTGTCTTC 58.912 52.381 0.00 0.00 0.00 2.87
728 729 2.290577 GGCTGAAACCCATCTGTCTTCT 60.291 50.000 0.00 0.00 0.00 2.85
729 730 2.746362 GCTGAAACCCATCTGTCTTCTG 59.254 50.000 0.00 0.00 0.00 3.02
730 731 2.746362 CTGAAACCCATCTGTCTTCTGC 59.254 50.000 0.00 0.00 0.00 4.26
731 732 2.106338 TGAAACCCATCTGTCTTCTGCA 59.894 45.455 0.00 0.00 0.00 4.41
732 733 2.191128 AACCCATCTGTCTTCTGCAC 57.809 50.000 0.00 0.00 0.00 4.57
733 734 1.356124 ACCCATCTGTCTTCTGCACT 58.644 50.000 0.00 0.00 0.00 4.40
734 735 1.277557 ACCCATCTGTCTTCTGCACTC 59.722 52.381 0.00 0.00 0.00 3.51
735 736 1.406614 CCCATCTGTCTTCTGCACTCC 60.407 57.143 0.00 0.00 0.00 3.85
736 737 1.406614 CCATCTGTCTTCTGCACTCCC 60.407 57.143 0.00 0.00 0.00 4.30
737 738 1.554160 CATCTGTCTTCTGCACTCCCT 59.446 52.381 0.00 0.00 0.00 4.20
738 739 1.261480 TCTGTCTTCTGCACTCCCTC 58.739 55.000 0.00 0.00 0.00 4.30
739 740 0.972134 CTGTCTTCTGCACTCCCTCA 59.028 55.000 0.00 0.00 0.00 3.86
740 741 1.345741 CTGTCTTCTGCACTCCCTCAA 59.654 52.381 0.00 0.00 0.00 3.02
741 742 1.768275 TGTCTTCTGCACTCCCTCAAA 59.232 47.619 0.00 0.00 0.00 2.69
742 743 2.172505 TGTCTTCTGCACTCCCTCAAAA 59.827 45.455 0.00 0.00 0.00 2.44
743 744 3.214328 GTCTTCTGCACTCCCTCAAAAA 58.786 45.455 0.00 0.00 0.00 1.94
801 802 3.499737 CGCCGAGGTGCATCCAAC 61.500 66.667 0.00 0.00 39.02 3.77
814 815 1.983119 ATCCAACCCGTCCATCGCAT 61.983 55.000 0.00 0.00 38.35 4.73
848 849 4.051237 CGGCTGAGATCGTATCAAATCAA 58.949 43.478 0.00 0.00 0.00 2.57
898 902 2.825836 CACCAATCAGAGCCCGCC 60.826 66.667 0.00 0.00 0.00 6.13
955 983 1.815003 GATTCCTCACCAGCCAAACAG 59.185 52.381 0.00 0.00 0.00 3.16
975 1021 3.391382 CCACACCTCTCCCCGTCC 61.391 72.222 0.00 0.00 0.00 4.79
979 1025 1.913762 CACCTCTCCCCGTCCAAGT 60.914 63.158 0.00 0.00 0.00 3.16
991 1048 1.604604 GTCCAAGTAGCAGCAACCAA 58.395 50.000 0.00 0.00 0.00 3.67
1129 1193 3.511934 CGAGAAGAAGGGGAAGAAGAAGA 59.488 47.826 0.00 0.00 0.00 2.87
1130 1194 4.021016 CGAGAAGAAGGGGAAGAAGAAGAA 60.021 45.833 0.00 0.00 0.00 2.52
1383 1447 4.135153 CACGCCGTCTCTGAGGGG 62.135 72.222 4.59 7.96 44.81 4.79
1482 1904 5.015515 TGGCTGTTTGATGAATCCATTGTA 58.984 37.500 0.00 0.00 32.09 2.41
1513 1935 2.783135 AGATGTTCAGAACGCACCATT 58.217 42.857 8.80 0.00 0.00 3.16
1524 1946 4.447389 AGAACGCACCATTTTGTAATTTGC 59.553 37.500 0.00 0.00 31.28 3.68
1547 1969 4.216257 CGAGGACACAAATGTTTCAGGATT 59.784 41.667 2.50 0.00 39.95 3.01
1577 1999 6.806739 GGAAATAGTAATGGTGTTGCTTTGAC 59.193 38.462 0.00 0.00 0.00 3.18
1592 2014 2.655090 TTGACCTGTTTCATGCCTGA 57.345 45.000 0.00 0.00 0.00 3.86
1593 2015 2.655090 TGACCTGTTTCATGCCTGAA 57.345 45.000 0.00 0.00 39.62 3.02
1595 2017 3.499338 TGACCTGTTTCATGCCTGAATT 58.501 40.909 5.20 0.00 40.95 2.17
1596 2018 3.256383 TGACCTGTTTCATGCCTGAATTG 59.744 43.478 5.20 0.00 40.95 2.32
1597 2019 3.233507 ACCTGTTTCATGCCTGAATTGT 58.766 40.909 5.20 0.00 40.95 2.71
1606 2040 2.523245 TGCCTGAATTGTTGCCATGTA 58.477 42.857 0.00 0.00 0.00 2.29
1609 2043 3.382546 GCCTGAATTGTTGCCATGTATCT 59.617 43.478 0.00 0.00 0.00 1.98
1611 2045 5.585390 CCTGAATTGTTGCCATGTATCTTC 58.415 41.667 0.00 0.00 0.00 2.87
1640 2074 0.888619 TCTGTCAGTCCATGGTCGTC 59.111 55.000 12.58 3.20 0.00 4.20
1646 2080 2.492088 TCAGTCCATGGTCGTCTGTAAG 59.508 50.000 12.58 0.00 0.00 2.34
1658 2092 1.342074 TCTGTAAGTGCCTGCAGACT 58.658 50.000 17.39 8.98 33.62 3.24
1666 2115 4.286297 AGTGCCTGCAGACTTAAATGTA 57.714 40.909 17.39 0.00 0.00 2.29
1682 2131 0.811219 TGTATGCAGAGTGATGGCGC 60.811 55.000 0.00 0.00 0.00 6.53
1697 2146 4.992511 CGCGGGGGTTGAAACGGA 62.993 66.667 0.00 0.00 0.00 4.69
1698 2147 3.053896 GCGGGGGTTGAAACGGAG 61.054 66.667 0.00 0.00 0.00 4.63
1699 2148 2.745037 CGGGGGTTGAAACGGAGA 59.255 61.111 0.00 0.00 0.00 3.71
1756 2213 2.362077 GGTTGTGTCCAGCTTGTGATTT 59.638 45.455 0.00 0.00 0.00 2.17
1758 2215 3.713858 TGTGTCCAGCTTGTGATTTTG 57.286 42.857 0.00 0.00 0.00 2.44
1764 2221 4.515191 GTCCAGCTTGTGATTTTGTCTGTA 59.485 41.667 0.00 0.00 0.00 2.74
1767 2224 5.239306 CCAGCTTGTGATTTTGTCTGTAGAA 59.761 40.000 0.00 0.00 0.00 2.10
1768 2225 6.138761 CAGCTTGTGATTTTGTCTGTAGAAC 58.861 40.000 0.00 0.00 0.00 3.01
1770 2227 6.318648 AGCTTGTGATTTTGTCTGTAGAACAA 59.681 34.615 0.00 0.00 0.00 2.83
1812 2316 3.623060 GGTGACATAACTGTGCCATAGTG 59.377 47.826 0.00 0.00 35.14 2.74
1865 2411 7.447374 TTGTCCACACGAATTCTCATTTTAT 57.553 32.000 3.52 0.00 0.00 1.40
1930 2476 1.265568 GTCTTTATCGTCGCAAGCGA 58.734 50.000 13.74 13.74 46.33 4.93
2005 2580 2.035704 CGATATTGCTGCTCAGGACTCT 59.964 50.000 0.00 0.00 0.00 3.24
2031 2606 5.273944 ACGTTCTTTTGCTGAACAATTCTC 58.726 37.500 7.28 0.00 42.63 2.87
2120 2735 2.309528 TTCCACGATCCCGAAAGATG 57.690 50.000 0.00 0.00 39.50 2.90
2176 2800 2.672996 AATGCCCTCGCGCTGTTT 60.673 55.556 5.56 0.00 38.08 2.83
2203 2827 5.787953 TCTCTTTGTTCCATTGCAATTCA 57.212 34.783 9.83 4.38 0.00 2.57
2254 2878 0.457851 CTCGTCAGAGGGCAAGGTAG 59.542 60.000 0.00 0.00 40.75 3.18
2267 2891 7.182206 AGAGGGCAAGGTAGTAAAGATAGAAAA 59.818 37.037 0.00 0.00 0.00 2.29
2268 2892 7.110810 AGGGCAAGGTAGTAAAGATAGAAAAC 58.889 38.462 0.00 0.00 0.00 2.43
2271 2895 8.957466 GGCAAGGTAGTAAAGATAGAAAACAAT 58.043 33.333 0.00 0.00 0.00 2.71
2345 3002 8.556213 AAAAAGGAAACACATAATAGCTACGA 57.444 30.769 0.00 0.00 0.00 3.43
2351 3008 5.373981 ACACATAATAGCTACGAGCCTAC 57.626 43.478 0.00 0.00 43.77 3.18
2382 3039 1.749665 CGACCACCACCACCTAACA 59.250 57.895 0.00 0.00 0.00 2.41
2384 3041 0.601841 GACCACCACCACCTAACACG 60.602 60.000 0.00 0.00 0.00 4.49
2390 3047 0.601841 CACCACCTAACACGACCACC 60.602 60.000 0.00 0.00 0.00 4.61
2391 3048 0.761702 ACCACCTAACACGACCACCT 60.762 55.000 0.00 0.00 0.00 4.00
2392 3049 0.320421 CCACCTAACACGACCACCTG 60.320 60.000 0.00 0.00 0.00 4.00
2393 3050 0.677288 CACCTAACACGACCACCTGA 59.323 55.000 0.00 0.00 0.00 3.86
2394 3051 0.966920 ACCTAACACGACCACCTGAG 59.033 55.000 0.00 0.00 0.00 3.35
2395 3052 0.966920 CCTAACACGACCACCTGAGT 59.033 55.000 0.00 0.00 0.00 3.41
2396 3053 1.336887 CCTAACACGACCACCTGAGTG 60.337 57.143 0.00 0.00 44.12 3.51
2405 3062 3.688086 ACCTGAGTGACCGAGAGC 58.312 61.111 0.00 0.00 0.00 4.09
2406 3063 1.228583 ACCTGAGTGACCGAGAGCA 60.229 57.895 0.00 0.00 0.00 4.26
2407 3064 0.827925 ACCTGAGTGACCGAGAGCAA 60.828 55.000 0.00 0.00 0.00 3.91
2408 3065 0.108898 CCTGAGTGACCGAGAGCAAG 60.109 60.000 0.00 0.00 0.00 4.01
2409 3066 0.884514 CTGAGTGACCGAGAGCAAGA 59.115 55.000 0.00 0.00 0.00 3.02
2410 3067 1.476085 CTGAGTGACCGAGAGCAAGAT 59.524 52.381 0.00 0.00 0.00 2.40
2411 3068 1.474478 TGAGTGACCGAGAGCAAGATC 59.526 52.381 0.00 0.00 0.00 2.75
2412 3069 1.748493 GAGTGACCGAGAGCAAGATCT 59.252 52.381 0.00 0.00 0.00 2.75
2413 3070 2.165437 GAGTGACCGAGAGCAAGATCTT 59.835 50.000 0.88 0.88 0.00 2.40
2414 3071 2.564947 AGTGACCGAGAGCAAGATCTTT 59.435 45.455 4.86 0.00 0.00 2.52
2415 3072 2.670414 GTGACCGAGAGCAAGATCTTTG 59.330 50.000 4.86 2.98 0.00 2.77
2416 3073 2.275318 GACCGAGAGCAAGATCTTTGG 58.725 52.381 4.86 0.28 33.57 3.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.850122 TCCACACACACGAAGAGATAG 57.150 47.619 0.00 0.00 0.00 2.08
1 2 4.338400 CCTATCCACACACACGAAGAGATA 59.662 45.833 0.00 0.00 0.00 1.98
2 3 3.131223 CCTATCCACACACACGAAGAGAT 59.869 47.826 0.00 0.00 0.00 2.75
3 4 2.492088 CCTATCCACACACACGAAGAGA 59.508 50.000 0.00 0.00 0.00 3.10
4 5 2.492088 TCCTATCCACACACACGAAGAG 59.508 50.000 0.00 0.00 0.00 2.85
5 6 2.521126 TCCTATCCACACACACGAAGA 58.479 47.619 0.00 0.00 0.00 2.87
6 7 2.993899 GTTCCTATCCACACACACGAAG 59.006 50.000 0.00 0.00 0.00 3.79
7 8 2.365941 TGTTCCTATCCACACACACGAA 59.634 45.455 0.00 0.00 0.00 3.85
8 9 1.964933 TGTTCCTATCCACACACACGA 59.035 47.619 0.00 0.00 0.00 4.35
9 10 2.448926 TGTTCCTATCCACACACACG 57.551 50.000 0.00 0.00 0.00 4.49
10 11 2.484264 GCTTGTTCCTATCCACACACAC 59.516 50.000 0.00 0.00 0.00 3.82
11 12 2.371841 AGCTTGTTCCTATCCACACACA 59.628 45.455 0.00 0.00 0.00 3.72
12 13 2.744202 CAGCTTGTTCCTATCCACACAC 59.256 50.000 0.00 0.00 0.00 3.82
13 14 2.875672 GCAGCTTGTTCCTATCCACACA 60.876 50.000 0.00 0.00 0.00 3.72
14 15 1.740025 GCAGCTTGTTCCTATCCACAC 59.260 52.381 0.00 0.00 0.00 3.82
15 16 1.340017 GGCAGCTTGTTCCTATCCACA 60.340 52.381 0.00 0.00 0.00 4.17
16 17 1.340017 TGGCAGCTTGTTCCTATCCAC 60.340 52.381 0.00 0.00 0.00 4.02
17 18 0.991146 TGGCAGCTTGTTCCTATCCA 59.009 50.000 0.00 0.00 0.00 3.41
18 19 1.383523 GTGGCAGCTTGTTCCTATCC 58.616 55.000 0.00 0.00 0.00 2.59
19 20 1.009829 CGTGGCAGCTTGTTCCTATC 58.990 55.000 0.00 0.00 0.00 2.08
20 21 0.613260 TCGTGGCAGCTTGTTCCTAT 59.387 50.000 0.00 0.00 0.00 2.57
21 22 0.613260 ATCGTGGCAGCTTGTTCCTA 59.387 50.000 0.00 0.00 0.00 2.94
22 23 0.957395 CATCGTGGCAGCTTGTTCCT 60.957 55.000 0.00 0.00 0.00 3.36
23 24 1.503542 CATCGTGGCAGCTTGTTCC 59.496 57.895 0.00 0.00 0.00 3.62
24 25 1.154150 GCATCGTGGCAGCTTGTTC 60.154 57.895 0.00 0.00 0.00 3.18
25 26 2.956987 GCATCGTGGCAGCTTGTT 59.043 55.556 0.00 0.00 0.00 2.83
26 27 3.425713 CGCATCGTGGCAGCTTGT 61.426 61.111 0.00 0.00 0.00 3.16
27 28 2.969806 AACGCATCGTGGCAGCTTG 61.970 57.895 0.00 0.00 39.99 4.01
28 29 2.669569 AACGCATCGTGGCAGCTT 60.670 55.556 0.00 0.00 39.99 3.74
29 30 3.425713 CAACGCATCGTGGCAGCT 61.426 61.111 0.00 0.00 39.99 4.24
30 31 4.465512 CCAACGCATCGTGGCAGC 62.466 66.667 0.00 0.00 39.99 5.25
31 32 4.465512 GCCAACGCATCGTGGCAG 62.466 66.667 19.78 0.73 45.66 4.85
33 34 4.465512 CAGCCAACGCATCGTGGC 62.466 66.667 18.18 18.18 46.21 5.01
34 35 2.244436 CTTCAGCCAACGCATCGTGG 62.244 60.000 0.00 0.00 39.99 4.94
35 36 1.133253 CTTCAGCCAACGCATCGTG 59.867 57.895 0.00 0.00 39.99 4.35
36 37 2.034879 CCTTCAGCCAACGCATCGT 61.035 57.895 0.00 0.00 43.97 3.73
37 38 0.739462 TACCTTCAGCCAACGCATCG 60.739 55.000 0.00 0.00 37.52 3.84
38 39 1.009829 CTACCTTCAGCCAACGCATC 58.990 55.000 0.00 0.00 37.52 3.91
39 40 1.026718 GCTACCTTCAGCCAACGCAT 61.027 55.000 0.00 0.00 37.52 4.73
40 41 1.671054 GCTACCTTCAGCCAACGCA 60.671 57.895 0.00 0.00 37.52 5.24
41 42 1.376037 AGCTACCTTCAGCCAACGC 60.376 57.895 0.00 0.00 42.84 4.84
42 43 1.639298 GCAGCTACCTTCAGCCAACG 61.639 60.000 0.00 0.00 42.84 4.10
43 44 0.606401 TGCAGCTACCTTCAGCCAAC 60.606 55.000 0.00 0.00 42.84 3.77
44 45 0.321919 CTGCAGCTACCTTCAGCCAA 60.322 55.000 0.00 0.00 42.84 4.52
45 46 1.297689 CTGCAGCTACCTTCAGCCA 59.702 57.895 0.00 0.00 42.84 4.75
46 47 4.215349 CTGCAGCTACCTTCAGCC 57.785 61.111 0.00 0.00 42.84 4.85
48 49 2.459442 GCGCTGCAGCTACCTTCAG 61.459 63.158 34.22 18.13 39.32 3.02
49 50 2.434884 GCGCTGCAGCTACCTTCA 60.435 61.111 34.22 0.00 39.32 3.02
50 51 0.530650 TATGCGCTGCAGCTACCTTC 60.531 55.000 34.22 16.67 43.65 3.46
51 52 0.531532 CTATGCGCTGCAGCTACCTT 60.532 55.000 34.22 21.25 43.65 3.50
52 53 1.068753 CTATGCGCTGCAGCTACCT 59.931 57.895 34.22 21.16 43.65 3.08
53 54 2.602322 GCTATGCGCTGCAGCTACC 61.602 63.158 34.22 22.38 43.65 3.18
54 55 2.934428 GCTATGCGCTGCAGCTAC 59.066 61.111 34.22 25.99 43.65 3.58
64 65 2.504461 GCAATGGCTAGCGCTATGCG 62.504 60.000 19.19 7.75 45.91 4.73
65 66 1.208614 GCAATGGCTAGCGCTATGC 59.791 57.895 19.19 19.97 37.42 3.14
76 77 0.950116 GATGAGGTAGCAGCAATGGC 59.050 55.000 0.00 0.00 41.61 4.40
77 78 1.224075 CGATGAGGTAGCAGCAATGG 58.776 55.000 0.00 0.00 0.00 3.16
78 79 1.863454 GACGATGAGGTAGCAGCAATG 59.137 52.381 0.00 0.00 0.00 2.82
79 80 1.759445 AGACGATGAGGTAGCAGCAAT 59.241 47.619 0.00 0.00 0.00 3.56
80 81 1.135139 GAGACGATGAGGTAGCAGCAA 59.865 52.381 0.00 0.00 0.00 3.91
81 82 0.741326 GAGACGATGAGGTAGCAGCA 59.259 55.000 0.00 0.00 0.00 4.41
82 83 0.317436 CGAGACGATGAGGTAGCAGC 60.317 60.000 0.00 0.00 0.00 5.25
83 84 0.309302 CCGAGACGATGAGGTAGCAG 59.691 60.000 0.00 0.00 0.00 4.24
84 85 1.101635 CCCGAGACGATGAGGTAGCA 61.102 60.000 0.00 0.00 0.00 3.49
85 86 1.655329 CCCGAGACGATGAGGTAGC 59.345 63.158 0.00 0.00 0.00 3.58
86 87 1.101635 TGCCCGAGACGATGAGGTAG 61.102 60.000 0.00 0.00 0.00 3.18
87 88 1.077285 TGCCCGAGACGATGAGGTA 60.077 57.895 0.00 0.00 0.00 3.08
88 89 2.362503 TGCCCGAGACGATGAGGT 60.363 61.111 0.00 0.00 0.00 3.85
89 90 2.415010 CTGCCCGAGACGATGAGG 59.585 66.667 0.00 0.00 0.00 3.86
90 91 2.279120 GCTGCCCGAGACGATGAG 60.279 66.667 0.00 0.00 0.00 2.90
91 92 3.838271 GGCTGCCCGAGACGATGA 61.838 66.667 7.66 0.00 0.00 2.92
130 131 4.704833 TTGCTGCAGGCGGACTCC 62.705 66.667 17.12 0.00 45.43 3.85
131 132 3.123620 CTTGCTGCAGGCGGACTC 61.124 66.667 17.12 0.00 45.43 3.36
132 133 3.630013 TCTTGCTGCAGGCGGACT 61.630 61.111 17.12 0.00 45.43 3.85
133 134 3.426568 GTCTTGCTGCAGGCGGAC 61.427 66.667 17.12 14.69 45.43 4.79
134 135 3.474486 TTGTCTTGCTGCAGGCGGA 62.474 57.895 17.12 7.53 45.43 5.54
135 136 2.974489 CTTGTCTTGCTGCAGGCGG 61.974 63.158 17.12 5.40 45.43 6.13
136 137 2.180131 GACTTGTCTTGCTGCAGGCG 62.180 60.000 17.12 0.00 45.43 5.52
137 138 1.578423 GACTTGTCTTGCTGCAGGC 59.422 57.895 17.12 8.54 42.22 4.85
138 139 1.572085 CCGACTTGTCTTGCTGCAGG 61.572 60.000 17.12 5.27 0.00 4.85
139 140 0.601046 TCCGACTTGTCTTGCTGCAG 60.601 55.000 10.11 10.11 0.00 4.41
140 141 0.601046 CTCCGACTTGTCTTGCTGCA 60.601 55.000 0.00 0.00 0.00 4.41
141 142 1.294659 CCTCCGACTTGTCTTGCTGC 61.295 60.000 0.00 0.00 0.00 5.25
142 143 0.671781 CCCTCCGACTTGTCTTGCTG 60.672 60.000 0.00 0.00 0.00 4.41
143 144 1.674057 CCCTCCGACTTGTCTTGCT 59.326 57.895 0.00 0.00 0.00 3.91
144 145 2.035442 GCCCTCCGACTTGTCTTGC 61.035 63.158 0.00 0.00 0.00 4.01
145 146 1.738099 CGCCCTCCGACTTGTCTTG 60.738 63.158 0.00 0.00 40.02 3.02
146 147 2.657237 CGCCCTCCGACTTGTCTT 59.343 61.111 0.00 0.00 40.02 3.01
147 148 4.070552 GCGCCCTCCGACTTGTCT 62.071 66.667 0.00 0.00 40.02 3.41
157 158 2.286127 GATAGGATAGCGGCGCCCTC 62.286 65.000 30.40 24.05 0.00 4.30
158 159 2.283966 ATAGGATAGCGGCGCCCT 60.284 61.111 30.40 28.32 0.00 5.19
159 160 2.184579 GATAGGATAGCGGCGCCC 59.815 66.667 30.40 22.73 0.00 6.13
166 167 2.159814 CGACGAGACACGATAGGATAGC 60.160 54.545 0.00 0.00 45.77 2.97
167 168 3.058450 ACGACGAGACACGATAGGATAG 58.942 50.000 0.00 0.00 45.77 2.08
168 169 3.055591 GACGACGAGACACGATAGGATA 58.944 50.000 0.00 0.00 45.77 2.59
169 170 1.865970 GACGACGAGACACGATAGGAT 59.134 52.381 0.00 0.00 45.77 3.24
170 171 1.284657 GACGACGAGACACGATAGGA 58.715 55.000 0.00 0.00 45.77 2.94
171 172 0.043224 CGACGACGAGACACGATAGG 60.043 60.000 0.00 0.00 45.77 2.57
172 173 0.644331 ACGACGACGAGACACGATAG 59.356 55.000 15.32 0.00 45.77 2.08
173 174 1.070821 AACGACGACGAGACACGATA 58.929 50.000 15.32 0.00 45.77 2.92
174 175 0.452287 CAACGACGACGAGACACGAT 60.452 55.000 15.32 0.00 45.77 3.73
175 176 1.083209 CAACGACGACGAGACACGA 60.083 57.895 15.32 0.00 45.77 4.35
177 178 1.589076 CTACAACGACGACGAGACAC 58.411 55.000 15.32 0.00 42.66 3.67
178 179 0.110509 GCTACAACGACGACGAGACA 60.111 55.000 15.32 0.00 42.66 3.41
179 180 1.119015 CGCTACAACGACGACGAGAC 61.119 60.000 15.32 1.66 42.66 3.36
180 181 1.131218 CGCTACAACGACGACGAGA 59.869 57.895 15.32 0.00 42.66 4.04
181 182 2.486322 GCGCTACAACGACGACGAG 61.486 63.158 15.32 8.51 42.66 4.18
182 183 2.500369 GCGCTACAACGACGACGA 60.500 61.111 15.32 0.00 42.66 4.20
183 184 3.530104 GGCGCTACAACGACGACG 61.530 66.667 7.64 5.58 45.75 5.12
184 185 1.550659 TTTGGCGCTACAACGACGAC 61.551 55.000 7.64 0.00 46.80 4.34
185 186 0.668096 ATTTGGCGCTACAACGACGA 60.668 50.000 7.64 0.00 46.80 4.20
186 187 0.518355 CATTTGGCGCTACAACGACG 60.518 55.000 7.64 0.00 46.80 5.12
187 188 0.793861 TCATTTGGCGCTACAACGAC 59.206 50.000 7.64 0.00 43.05 4.34
188 189 1.075542 CTCATTTGGCGCTACAACGA 58.924 50.000 7.64 2.68 34.06 3.85
189 190 1.061131 CTCTCATTTGGCGCTACAACG 59.939 52.381 7.64 0.00 0.00 4.10
190 191 1.398390 CCTCTCATTTGGCGCTACAAC 59.602 52.381 7.64 0.00 0.00 3.32
191 192 1.678728 CCCTCTCATTTGGCGCTACAA 60.679 52.381 7.64 0.03 0.00 2.41
192 193 0.107703 CCCTCTCATTTGGCGCTACA 60.108 55.000 7.64 0.00 0.00 2.74
193 194 0.815615 CCCCTCTCATTTGGCGCTAC 60.816 60.000 7.64 0.00 0.00 3.58
194 195 1.526887 CCCCTCTCATTTGGCGCTA 59.473 57.895 7.64 0.00 0.00 4.26
195 196 2.273449 CCCCTCTCATTTGGCGCT 59.727 61.111 7.64 0.00 0.00 5.92
196 197 3.521796 GCCCCTCTCATTTGGCGC 61.522 66.667 0.00 0.00 33.59 6.53
198 199 1.095807 GTACGCCCCTCTCATTTGGC 61.096 60.000 0.00 0.00 40.54 4.52
199 200 0.541863 AGTACGCCCCTCTCATTTGG 59.458 55.000 0.00 0.00 0.00 3.28
200 201 1.207089 TGAGTACGCCCCTCTCATTTG 59.793 52.381 0.00 0.00 34.00 2.32
201 202 1.207329 GTGAGTACGCCCCTCTCATTT 59.793 52.381 0.00 0.00 39.77 2.32
202 203 0.824759 GTGAGTACGCCCCTCTCATT 59.175 55.000 0.00 0.00 39.77 2.57
203 204 1.384989 CGTGAGTACGCCCCTCTCAT 61.385 60.000 0.00 0.00 44.11 2.90
204 205 2.044555 CGTGAGTACGCCCCTCTCA 61.045 63.158 0.00 0.00 44.11 3.27
205 206 2.799371 CGTGAGTACGCCCCTCTC 59.201 66.667 0.00 0.00 44.11 3.20
214 215 4.630097 GCTATCGGCCGTGAGTAC 57.370 61.111 27.15 7.47 34.27 2.73
223 224 1.009829 CAAGTTGAGTGGCTATCGGC 58.990 55.000 0.00 0.00 40.90 5.54
224 225 2.386661 ACAAGTTGAGTGGCTATCGG 57.613 50.000 10.54 0.00 0.00 4.18
225 226 3.125316 GGAAACAAGTTGAGTGGCTATCG 59.875 47.826 10.54 0.00 0.00 2.92
226 227 3.440522 GGGAAACAAGTTGAGTGGCTATC 59.559 47.826 10.54 0.00 0.00 2.08
227 228 3.421844 GGGAAACAAGTTGAGTGGCTAT 58.578 45.455 10.54 0.00 0.00 2.97
228 229 2.488347 GGGGAAACAAGTTGAGTGGCTA 60.488 50.000 10.54 0.00 0.00 3.93
229 230 1.692411 GGGAAACAAGTTGAGTGGCT 58.308 50.000 10.54 0.00 0.00 4.75
230 231 0.673985 GGGGAAACAAGTTGAGTGGC 59.326 55.000 10.54 0.00 0.00 5.01
231 232 2.364972 AGGGGAAACAAGTTGAGTGG 57.635 50.000 10.54 0.00 0.00 4.00
232 233 2.623416 GGAAGGGGAAACAAGTTGAGTG 59.377 50.000 10.54 0.00 0.00 3.51
233 234 2.424379 GGGAAGGGGAAACAAGTTGAGT 60.424 50.000 10.54 0.00 0.00 3.41
234 235 2.158460 AGGGAAGGGGAAACAAGTTGAG 60.158 50.000 10.54 0.00 0.00 3.02
235 236 1.856920 AGGGAAGGGGAAACAAGTTGA 59.143 47.619 10.54 0.00 0.00 3.18
236 237 2.239400 GAGGGAAGGGGAAACAAGTTG 58.761 52.381 0.00 0.00 0.00 3.16
237 238 1.856920 TGAGGGAAGGGGAAACAAGTT 59.143 47.619 0.00 0.00 0.00 2.66
238 239 1.529744 TGAGGGAAGGGGAAACAAGT 58.470 50.000 0.00 0.00 0.00 3.16
239 240 2.675658 TTGAGGGAAGGGGAAACAAG 57.324 50.000 0.00 0.00 0.00 3.16
240 241 3.116939 TGATTTGAGGGAAGGGGAAACAA 60.117 43.478 0.00 0.00 0.00 2.83
241 242 2.448961 TGATTTGAGGGAAGGGGAAACA 59.551 45.455 0.00 0.00 0.00 2.83
242 243 3.169512 TGATTTGAGGGAAGGGGAAAC 57.830 47.619 0.00 0.00 0.00 2.78
243 244 3.913370 TTGATTTGAGGGAAGGGGAAA 57.087 42.857 0.00 0.00 0.00 3.13
244 245 4.352893 GAATTGATTTGAGGGAAGGGGAA 58.647 43.478 0.00 0.00 0.00 3.97
245 246 3.309848 GGAATTGATTTGAGGGAAGGGGA 60.310 47.826 0.00 0.00 0.00 4.81
246 247 3.033909 GGAATTGATTTGAGGGAAGGGG 58.966 50.000 0.00 0.00 0.00 4.79
247 248 3.703052 CTGGAATTGATTTGAGGGAAGGG 59.297 47.826 0.00 0.00 0.00 3.95
248 249 3.131755 GCTGGAATTGATTTGAGGGAAGG 59.868 47.826 0.00 0.00 0.00 3.46
249 250 3.131755 GGCTGGAATTGATTTGAGGGAAG 59.868 47.826 0.00 0.00 0.00 3.46
250 251 3.099141 GGCTGGAATTGATTTGAGGGAA 58.901 45.455 0.00 0.00 0.00 3.97
251 252 2.042842 TGGCTGGAATTGATTTGAGGGA 59.957 45.455 0.00 0.00 0.00 4.20
252 253 2.459644 TGGCTGGAATTGATTTGAGGG 58.540 47.619 0.00 0.00 0.00 4.30
253 254 3.702548 TCATGGCTGGAATTGATTTGAGG 59.297 43.478 0.00 0.00 0.00 3.86
254 255 4.736759 GCTCATGGCTGGAATTGATTTGAG 60.737 45.833 0.00 0.00 38.06 3.02
255 256 3.131577 GCTCATGGCTGGAATTGATTTGA 59.868 43.478 0.00 0.00 38.06 2.69
256 257 3.454375 GCTCATGGCTGGAATTGATTTG 58.546 45.455 0.00 0.00 38.06 2.32
257 258 2.100252 CGCTCATGGCTGGAATTGATTT 59.900 45.455 0.00 0.00 39.13 2.17
258 259 1.679680 CGCTCATGGCTGGAATTGATT 59.320 47.619 0.00 0.00 39.13 2.57
259 260 1.315690 CGCTCATGGCTGGAATTGAT 58.684 50.000 0.00 0.00 39.13 2.57
260 261 1.378882 GCGCTCATGGCTGGAATTGA 61.379 55.000 0.00 0.00 39.13 2.57
261 262 1.065273 GCGCTCATGGCTGGAATTG 59.935 57.895 0.00 0.00 39.13 2.32
262 263 2.123428 GGCGCTCATGGCTGGAATT 61.123 57.895 7.64 0.00 39.13 2.17
263 264 2.517875 GGCGCTCATGGCTGGAAT 60.518 61.111 7.64 0.00 39.13 3.01
264 265 3.687321 GAGGCGCTCATGGCTGGAA 62.687 63.158 7.64 0.00 45.90 3.53
265 266 4.166888 GAGGCGCTCATGGCTGGA 62.167 66.667 7.64 0.00 45.90 3.86
267 268 3.694058 AAGGAGGCGCTCATGGCTG 62.694 63.158 7.64 0.00 45.90 4.85
269 270 2.032860 TAGAAGGAGGCGCTCATGGC 62.033 60.000 7.64 0.00 37.64 4.40
270 271 0.249657 GTAGAAGGAGGCGCTCATGG 60.250 60.000 7.64 0.00 31.08 3.66
271 272 0.461548 TGTAGAAGGAGGCGCTCATG 59.538 55.000 7.64 0.00 31.08 3.07
272 273 1.134670 GTTGTAGAAGGAGGCGCTCAT 60.135 52.381 7.64 0.00 31.08 2.90
273 274 0.246635 GTTGTAGAAGGAGGCGCTCA 59.753 55.000 7.64 0.00 31.08 4.26
274 275 0.533032 AGTTGTAGAAGGAGGCGCTC 59.467 55.000 7.64 2.45 0.00 5.03
275 276 0.533032 GAGTTGTAGAAGGAGGCGCT 59.467 55.000 7.64 0.00 0.00 5.92
276 277 0.460459 GGAGTTGTAGAAGGAGGCGC 60.460 60.000 0.00 0.00 0.00 6.53
277 278 0.179134 CGGAGTTGTAGAAGGAGGCG 60.179 60.000 0.00 0.00 0.00 5.52
278 279 0.175989 CCGGAGTTGTAGAAGGAGGC 59.824 60.000 0.00 0.00 0.00 4.70
279 280 0.175989 GCCGGAGTTGTAGAAGGAGG 59.824 60.000 5.05 0.00 0.00 4.30
280 281 0.179134 CGCCGGAGTTGTAGAAGGAG 60.179 60.000 5.05 0.00 0.00 3.69
281 282 0.609957 TCGCCGGAGTTGTAGAAGGA 60.610 55.000 5.05 0.00 0.00 3.36
282 283 0.245539 TTCGCCGGAGTTGTAGAAGG 59.754 55.000 5.05 0.00 0.00 3.46
283 284 1.630148 CTTCGCCGGAGTTGTAGAAG 58.370 55.000 5.05 3.93 0.00 2.85
284 285 0.245539 CCTTCGCCGGAGTTGTAGAA 59.754 55.000 5.05 0.00 0.00 2.10
285 286 1.601419 CCCTTCGCCGGAGTTGTAGA 61.601 60.000 5.05 0.00 0.00 2.59
286 287 1.153628 CCCTTCGCCGGAGTTGTAG 60.154 63.158 5.05 0.00 0.00 2.74
287 288 2.652095 CCCCTTCGCCGGAGTTGTA 61.652 63.158 5.05 0.00 0.00 2.41
288 289 4.016706 CCCCTTCGCCGGAGTTGT 62.017 66.667 5.05 0.00 0.00 3.32
289 290 2.741486 TTTCCCCTTCGCCGGAGTTG 62.741 60.000 5.05 0.00 0.00 3.16
290 291 2.059345 TTTTCCCCTTCGCCGGAGTT 62.059 55.000 5.05 0.00 0.00 3.01
291 292 2.465055 CTTTTCCCCTTCGCCGGAGT 62.465 60.000 5.05 0.00 0.00 3.85
292 293 1.745489 CTTTTCCCCTTCGCCGGAG 60.745 63.158 5.05 0.00 0.00 4.63
293 294 2.349755 CTTTTCCCCTTCGCCGGA 59.650 61.111 5.05 0.00 0.00 5.14
294 295 3.440415 GCTTTTCCCCTTCGCCGG 61.440 66.667 0.00 0.00 0.00 6.13
295 296 2.359975 AGCTTTTCCCCTTCGCCG 60.360 61.111 0.00 0.00 0.00 6.46
296 297 1.303317 TGAGCTTTTCCCCTTCGCC 60.303 57.895 0.00 0.00 0.00 5.54
297 298 0.606673 AGTGAGCTTTTCCCCTTCGC 60.607 55.000 0.00 0.00 0.00 4.70
298 299 1.443802 GAGTGAGCTTTTCCCCTTCG 58.556 55.000 0.00 0.00 0.00 3.79
299 300 1.073923 TGGAGTGAGCTTTTCCCCTTC 59.926 52.381 8.95 0.00 0.00 3.46
300 301 1.149101 TGGAGTGAGCTTTTCCCCTT 58.851 50.000 8.95 0.00 0.00 3.95
301 302 0.402121 GTGGAGTGAGCTTTTCCCCT 59.598 55.000 8.95 0.00 0.00 4.79
302 303 0.609406 GGTGGAGTGAGCTTTTCCCC 60.609 60.000 8.95 6.71 0.00 4.81
303 304 0.402121 AGGTGGAGTGAGCTTTTCCC 59.598 55.000 8.95 0.59 0.00 3.97
304 305 1.349357 AGAGGTGGAGTGAGCTTTTCC 59.651 52.381 5.42 5.42 0.00 3.13
305 306 2.694213 GAGAGGTGGAGTGAGCTTTTC 58.306 52.381 0.00 0.00 0.00 2.29
306 307 1.001406 CGAGAGGTGGAGTGAGCTTTT 59.999 52.381 0.00 0.00 0.00 2.27
307 308 0.605589 CGAGAGGTGGAGTGAGCTTT 59.394 55.000 0.00 0.00 0.00 3.51
308 309 2.271940 CGAGAGGTGGAGTGAGCTT 58.728 57.895 0.00 0.00 0.00 3.74
309 310 4.010575 CGAGAGGTGGAGTGAGCT 57.989 61.111 0.00 0.00 0.00 4.09
321 322 2.334653 GAGCGCTCCATCCGAGAG 59.665 66.667 27.22 0.00 41.63 3.20
322 323 3.586961 CGAGCGCTCCATCCGAGA 61.587 66.667 30.66 0.00 41.63 4.04
323 324 4.637489 CCGAGCGCTCCATCCGAG 62.637 72.222 30.66 14.92 42.04 4.63
325 326 4.207281 TTCCGAGCGCTCCATCCG 62.207 66.667 30.66 19.38 0.00 4.18
326 327 2.279784 CTTCCGAGCGCTCCATCC 60.280 66.667 30.66 7.46 0.00 3.51
327 328 2.279784 CCTTCCGAGCGCTCCATC 60.280 66.667 30.66 8.16 0.00 3.51
328 329 3.077556 ACCTTCCGAGCGCTCCAT 61.078 61.111 30.66 7.80 0.00 3.41
329 330 4.069232 CACCTTCCGAGCGCTCCA 62.069 66.667 30.66 15.59 0.00 3.86
330 331 4.821589 CCACCTTCCGAGCGCTCC 62.822 72.222 30.66 13.79 0.00 4.70
331 332 4.821589 CCCACCTTCCGAGCGCTC 62.822 72.222 27.64 27.64 0.00 5.03
334 335 3.649277 CTGACCCACCTTCCGAGCG 62.649 68.421 0.00 0.00 0.00 5.03
335 336 2.266055 CTGACCCACCTTCCGAGC 59.734 66.667 0.00 0.00 0.00 5.03
336 337 2.266055 GCTGACCCACCTTCCGAG 59.734 66.667 0.00 0.00 0.00 4.63
337 338 3.691342 CGCTGACCCACCTTCCGA 61.691 66.667 0.00 0.00 0.00 4.55
338 339 4.760047 CCGCTGACCCACCTTCCG 62.760 72.222 0.00 0.00 0.00 4.30
339 340 3.637273 ACCGCTGACCCACCTTCC 61.637 66.667 0.00 0.00 0.00 3.46
340 341 2.358737 CACCGCTGACCCACCTTC 60.359 66.667 0.00 0.00 0.00 3.46
341 342 3.953775 CCACCGCTGACCCACCTT 61.954 66.667 0.00 0.00 0.00 3.50
354 355 3.041940 CAACTCGTGTCGGCCACC 61.042 66.667 2.24 0.00 41.26 4.61
355 356 3.041940 CCAACTCGTGTCGGCCAC 61.042 66.667 2.24 0.25 40.89 5.01
356 357 3.220999 CTCCAACTCGTGTCGGCCA 62.221 63.158 2.24 0.00 0.00 5.36
357 358 2.432628 CTCCAACTCGTGTCGGCC 60.433 66.667 0.00 0.00 0.00 6.13
358 359 3.112709 GCTCCAACTCGTGTCGGC 61.113 66.667 0.00 0.00 0.00 5.54
359 360 1.734477 CTGCTCCAACTCGTGTCGG 60.734 63.158 0.00 0.00 0.00 4.79
360 361 0.730834 CTCTGCTCCAACTCGTGTCG 60.731 60.000 0.00 0.00 0.00 4.35
361 362 0.389166 CCTCTGCTCCAACTCGTGTC 60.389 60.000 0.00 0.00 0.00 3.67
362 363 1.668294 CCTCTGCTCCAACTCGTGT 59.332 57.895 0.00 0.00 0.00 4.49
363 364 1.739562 GCCTCTGCTCCAACTCGTG 60.740 63.158 0.00 0.00 33.53 4.35
364 365 2.659610 GCCTCTGCTCCAACTCGT 59.340 61.111 0.00 0.00 33.53 4.18
365 366 2.507992 CGCCTCTGCTCCAACTCG 60.508 66.667 0.00 0.00 34.43 4.18
366 367 2.125350 CCGCCTCTGCTCCAACTC 60.125 66.667 0.00 0.00 34.43 3.01
367 368 4.400961 GCCGCCTCTGCTCCAACT 62.401 66.667 0.00 0.00 34.43 3.16
392 393 4.821589 CCGCCTCCGCTCCAACTC 62.822 72.222 0.00 0.00 0.00 3.01
489 490 4.200283 CACCTCCGCCTCTCTCGC 62.200 72.222 0.00 0.00 0.00 5.03
490 491 3.522731 CCACCTCCGCCTCTCTCG 61.523 72.222 0.00 0.00 0.00 4.04
491 492 3.844090 GCCACCTCCGCCTCTCTC 61.844 72.222 0.00 0.00 0.00 3.20
509 510 4.647615 CTCATACCCCTCGCGCCG 62.648 72.222 0.00 0.00 0.00 6.46
510 511 4.301027 CCTCATACCCCTCGCGCC 62.301 72.222 0.00 0.00 0.00 6.53
511 512 3.224324 TCCTCATACCCCTCGCGC 61.224 66.667 0.00 0.00 0.00 6.86
512 513 2.728817 GTCCTCATACCCCTCGCG 59.271 66.667 0.00 0.00 0.00 5.87
513 514 1.389609 TTCGTCCTCATACCCCTCGC 61.390 60.000 0.00 0.00 0.00 5.03
514 515 0.669077 CTTCGTCCTCATACCCCTCG 59.331 60.000 0.00 0.00 0.00 4.63
515 516 1.041437 CCTTCGTCCTCATACCCCTC 58.959 60.000 0.00 0.00 0.00 4.30
516 517 0.398664 CCCTTCGTCCTCATACCCCT 60.399 60.000 0.00 0.00 0.00 4.79
517 518 2.041206 GCCCTTCGTCCTCATACCCC 62.041 65.000 0.00 0.00 0.00 4.95
518 519 1.446366 GCCCTTCGTCCTCATACCC 59.554 63.158 0.00 0.00 0.00 3.69
519 520 1.067582 CGCCCTTCGTCCTCATACC 59.932 63.158 0.00 0.00 0.00 2.73
520 521 4.732106 CGCCCTTCGTCCTCATAC 57.268 61.111 0.00 0.00 0.00 2.39
544 545 3.910914 TTTGTCGCCATCCACCCCG 62.911 63.158 0.00 0.00 0.00 5.73
545 546 2.034999 TTTGTCGCCATCCACCCC 59.965 61.111 0.00 0.00 0.00 4.95
546 547 2.686816 CGTTTGTCGCCATCCACCC 61.687 63.158 0.00 0.00 0.00 4.61
547 548 2.867472 CGTTTGTCGCCATCCACC 59.133 61.111 0.00 0.00 0.00 4.61
556 557 1.129809 CAACCGCTAGCGTTTGTCG 59.870 57.895 31.81 20.23 37.13 4.35
557 558 0.438830 CTCAACCGCTAGCGTTTGTC 59.561 55.000 35.94 0.00 41.45 3.18
558 559 0.032952 TCTCAACCGCTAGCGTTTGT 59.967 50.000 35.94 24.79 41.45 2.83
559 560 0.716108 CTCTCAACCGCTAGCGTTTG 59.284 55.000 33.61 33.61 41.94 2.93
560 561 0.601558 TCTCTCAACCGCTAGCGTTT 59.398 50.000 33.18 24.80 37.81 3.60
561 562 0.171455 CTCTCTCAACCGCTAGCGTT 59.829 55.000 33.18 23.78 37.81 4.84
562 563 1.803943 CTCTCTCAACCGCTAGCGT 59.196 57.895 33.18 19.63 37.81 5.07
563 564 1.587613 GCTCTCTCAACCGCTAGCG 60.588 63.158 29.93 29.93 39.44 4.26
564 565 0.804156 GTGCTCTCTCAACCGCTAGC 60.804 60.000 4.06 4.06 0.00 3.42
565 566 0.524392 CGTGCTCTCTCAACCGCTAG 60.524 60.000 0.00 0.00 0.00 3.42
566 567 0.958876 TCGTGCTCTCTCAACCGCTA 60.959 55.000 0.00 0.00 0.00 4.26
567 568 2.259818 CGTGCTCTCTCAACCGCT 59.740 61.111 0.00 0.00 0.00 5.52
568 569 2.089349 GTCGTGCTCTCTCAACCGC 61.089 63.158 0.00 0.00 0.00 5.68
569 570 1.444553 GGTCGTGCTCTCTCAACCG 60.445 63.158 0.00 0.00 0.00 4.44
570 571 0.389166 CTGGTCGTGCTCTCTCAACC 60.389 60.000 0.00 0.00 0.00 3.77
571 572 0.389166 CCTGGTCGTGCTCTCTCAAC 60.389 60.000 0.00 0.00 0.00 3.18
572 573 0.827925 ACCTGGTCGTGCTCTCTCAA 60.828 55.000 0.00 0.00 0.00 3.02
573 574 0.037734 TACCTGGTCGTGCTCTCTCA 59.962 55.000 0.63 0.00 0.00 3.27
574 575 0.452585 GTACCTGGTCGTGCTCTCTC 59.547 60.000 0.63 0.00 0.00 3.20
575 576 0.966370 GGTACCTGGTCGTGCTCTCT 60.966 60.000 0.63 0.00 0.00 3.10
576 577 1.248785 TGGTACCTGGTCGTGCTCTC 61.249 60.000 14.36 0.00 0.00 3.20
577 578 1.228769 TGGTACCTGGTCGTGCTCT 60.229 57.895 14.36 0.00 0.00 4.09
578 579 1.080025 GTGGTACCTGGTCGTGCTC 60.080 63.158 14.36 0.00 0.00 4.26
579 580 2.580601 GGTGGTACCTGGTCGTGCT 61.581 63.158 14.36 0.00 34.73 4.40
580 581 2.047560 GGTGGTACCTGGTCGTGC 60.048 66.667 14.36 0.00 34.73 5.34
589 590 4.404098 CACGGGCCAGGTGGTACC 62.404 72.222 16.26 4.43 38.99 3.34
609 610 2.960957 ATCTCGCCCGAATCGCTGTG 62.961 60.000 0.00 0.00 0.00 3.66
610 611 2.786495 ATCTCGCCCGAATCGCTGT 61.786 57.895 0.00 0.00 0.00 4.40
611 612 2.028190 ATCTCGCCCGAATCGCTG 59.972 61.111 0.00 0.00 0.00 5.18
612 613 2.028190 CATCTCGCCCGAATCGCT 59.972 61.111 0.00 0.00 0.00 4.93
613 614 2.279517 ACATCTCGCCCGAATCGC 60.280 61.111 0.00 0.00 0.00 4.58
614 615 2.589492 GCACATCTCGCCCGAATCG 61.589 63.158 0.00 0.00 0.00 3.34
615 616 2.589492 CGCACATCTCGCCCGAATC 61.589 63.158 0.00 0.00 0.00 2.52
616 617 2.586079 CGCACATCTCGCCCGAAT 60.586 61.111 0.00 0.00 0.00 3.34
617 618 4.812476 CCGCACATCTCGCCCGAA 62.812 66.667 0.00 0.00 0.00 4.30
623 624 4.147449 TCCTGGCCGCACATCTCG 62.147 66.667 0.00 0.00 0.00 4.04
624 625 2.202987 CTCCTGGCCGCACATCTC 60.203 66.667 0.00 0.00 0.00 2.75
625 626 4.479993 GCTCCTGGCCGCACATCT 62.480 66.667 0.00 0.00 34.27 2.90
646 647 1.701545 TTTTTAGGCATCGCGAGCGG 61.702 55.000 16.66 7.96 40.25 5.52
647 648 0.315382 CTTTTTAGGCATCGCGAGCG 60.315 55.000 16.66 11.64 41.35 5.03
648 649 0.727398 ACTTTTTAGGCATCGCGAGC 59.273 50.000 16.66 17.70 0.00 5.03
649 650 1.529826 GCACTTTTTAGGCATCGCGAG 60.530 52.381 16.66 8.11 0.00 5.03
650 651 0.446222 GCACTTTTTAGGCATCGCGA 59.554 50.000 13.09 13.09 0.00 5.87
651 652 0.857311 CGCACTTTTTAGGCATCGCG 60.857 55.000 0.00 0.00 35.14 5.87
652 653 0.168128 ACGCACTTTTTAGGCATCGC 59.832 50.000 0.00 0.00 0.00 4.58
653 654 3.607439 CATACGCACTTTTTAGGCATCG 58.393 45.455 0.00 0.00 0.00 3.84
654 655 3.181501 TGCATACGCACTTTTTAGGCATC 60.182 43.478 0.00 0.00 45.36 3.91
655 656 2.752354 TGCATACGCACTTTTTAGGCAT 59.248 40.909 0.00 0.00 45.36 4.40
656 657 2.155279 TGCATACGCACTTTTTAGGCA 58.845 42.857 0.00 0.00 45.36 4.75
657 658 2.911819 TGCATACGCACTTTTTAGGC 57.088 45.000 0.00 0.00 45.36 3.93
668 669 3.698029 ATCAACCTGAAATGCATACGC 57.302 42.857 0.00 0.00 39.24 4.42
669 670 6.574832 CGAAATATCAACCTGAAATGCATACG 59.425 38.462 0.00 0.00 0.00 3.06
670 671 6.857964 CCGAAATATCAACCTGAAATGCATAC 59.142 38.462 0.00 0.00 0.00 2.39
671 672 6.545666 ACCGAAATATCAACCTGAAATGCATA 59.454 34.615 0.00 0.00 0.00 3.14
672 673 5.360714 ACCGAAATATCAACCTGAAATGCAT 59.639 36.000 0.00 0.00 0.00 3.96
673 674 4.704540 ACCGAAATATCAACCTGAAATGCA 59.295 37.500 0.00 0.00 0.00 3.96
674 675 5.248870 ACCGAAATATCAACCTGAAATGC 57.751 39.130 0.00 0.00 0.00 3.56
675 676 6.857964 GCATACCGAAATATCAACCTGAAATG 59.142 38.462 0.00 0.00 0.00 2.32
676 677 6.293407 CGCATACCGAAATATCAACCTGAAAT 60.293 38.462 0.00 0.00 40.02 2.17
677 678 5.007234 CGCATACCGAAATATCAACCTGAAA 59.993 40.000 0.00 0.00 40.02 2.69
678 679 4.509970 CGCATACCGAAATATCAACCTGAA 59.490 41.667 0.00 0.00 40.02 3.02
679 680 4.055360 CGCATACCGAAATATCAACCTGA 58.945 43.478 0.00 0.00 40.02 3.86
680 681 3.363970 GCGCATACCGAAATATCAACCTG 60.364 47.826 0.30 0.00 40.02 4.00
681 682 2.806244 GCGCATACCGAAATATCAACCT 59.194 45.455 0.30 0.00 40.02 3.50
682 683 2.411031 CGCGCATACCGAAATATCAACC 60.411 50.000 8.75 0.00 40.02 3.77
683 684 2.822827 CGCGCATACCGAAATATCAAC 58.177 47.619 8.75 0.00 40.02 3.18
684 685 1.193650 GCGCGCATACCGAAATATCAA 59.806 47.619 29.10 0.00 40.02 2.57
685 686 0.787787 GCGCGCATACCGAAATATCA 59.212 50.000 29.10 0.00 40.02 2.15
686 687 0.246757 CGCGCGCATACCGAAATATC 60.247 55.000 32.61 0.00 40.02 1.63
687 688 0.942410 ACGCGCGCATACCGAAATAT 60.942 50.000 32.58 1.37 40.02 1.28
688 689 1.589461 ACGCGCGCATACCGAAATA 60.589 52.632 32.58 0.00 40.02 1.40
689 690 2.888534 ACGCGCGCATACCGAAAT 60.889 55.556 32.58 2.28 40.02 2.17
690 691 3.844355 CACGCGCGCATACCGAAA 61.844 61.111 32.58 0.00 40.02 3.46
707 708 2.087646 GAAGACAGATGGGTTTCAGCC 58.912 52.381 0.00 0.00 36.00 4.85
708 709 2.746362 CAGAAGACAGATGGGTTTCAGC 59.254 50.000 0.00 0.00 0.00 4.26
709 710 2.746362 GCAGAAGACAGATGGGTTTCAG 59.254 50.000 0.00 0.00 0.00 3.02
710 711 2.106338 TGCAGAAGACAGATGGGTTTCA 59.894 45.455 0.00 0.00 0.00 2.69
711 712 2.485814 GTGCAGAAGACAGATGGGTTTC 59.514 50.000 0.00 0.00 0.00 2.78
712 713 2.107204 AGTGCAGAAGACAGATGGGTTT 59.893 45.455 0.00 0.00 0.00 3.27
713 714 1.701847 AGTGCAGAAGACAGATGGGTT 59.298 47.619 0.00 0.00 0.00 4.11
714 715 1.277557 GAGTGCAGAAGACAGATGGGT 59.722 52.381 0.00 0.00 0.00 4.51
715 716 1.406614 GGAGTGCAGAAGACAGATGGG 60.407 57.143 0.00 0.00 0.00 4.00
716 717 1.406614 GGGAGTGCAGAAGACAGATGG 60.407 57.143 0.00 0.00 0.00 3.51
717 718 1.554160 AGGGAGTGCAGAAGACAGATG 59.446 52.381 0.00 0.00 0.00 2.90
718 719 1.830477 GAGGGAGTGCAGAAGACAGAT 59.170 52.381 0.00 0.00 0.00 2.90
719 720 1.261480 GAGGGAGTGCAGAAGACAGA 58.739 55.000 0.00 0.00 0.00 3.41
720 721 0.972134 TGAGGGAGTGCAGAAGACAG 59.028 55.000 0.00 0.00 0.00 3.51
721 722 1.423584 TTGAGGGAGTGCAGAAGACA 58.576 50.000 0.00 0.00 0.00 3.41
722 723 2.550830 TTTGAGGGAGTGCAGAAGAC 57.449 50.000 0.00 0.00 0.00 3.01
723 724 3.576078 TTTTTGAGGGAGTGCAGAAGA 57.424 42.857 0.00 0.00 0.00 2.87
744 745 2.030805 GGCGTGCAGAAGACAGATTTTT 60.031 45.455 0.00 0.00 0.00 1.94
745 746 1.537202 GGCGTGCAGAAGACAGATTTT 59.463 47.619 0.00 0.00 0.00 1.82
746 747 1.160137 GGCGTGCAGAAGACAGATTT 58.840 50.000 0.00 0.00 0.00 2.17
747 748 0.674895 GGGCGTGCAGAAGACAGATT 60.675 55.000 0.00 0.00 0.00 2.40
792 793 1.077787 GATGGACGGGTTGGATGCA 60.078 57.895 0.00 0.00 0.00 3.96
799 800 0.179084 CTGTATGCGATGGACGGGTT 60.179 55.000 0.00 0.00 42.83 4.11
801 802 1.956170 GCTGTATGCGATGGACGGG 60.956 63.158 0.00 0.00 42.83 5.28
898 902 4.021544 CGGAGGATTTATTGGAGAGGAGAG 60.022 50.000 0.00 0.00 0.00 3.20
904 908 1.540363 GCGCGGAGGATTTATTGGAGA 60.540 52.381 8.83 0.00 0.00 3.71
909 913 0.250338 GAGGGCGCGGAGGATTTATT 60.250 55.000 8.83 0.00 0.00 1.40
955 983 4.394712 CGGGGAGAGGTGTGGTGC 62.395 72.222 0.00 0.00 0.00 5.01
975 1021 0.238289 CCGTTGGTTGCTGCTACTTG 59.762 55.000 13.54 2.34 0.00 3.16
979 1025 1.303236 ATGCCGTTGGTTGCTGCTA 60.303 52.632 0.00 0.00 0.00 3.49
1129 1193 1.603172 CGTCTCCACGCTCTTCTTGTT 60.603 52.381 0.00 0.00 39.69 2.83
1130 1194 0.039074 CGTCTCCACGCTCTTCTTGT 60.039 55.000 0.00 0.00 39.69 3.16
1383 1447 1.966451 CTTGGTGACGGCCTTGGTC 60.966 63.158 0.00 1.02 34.99 4.02
1482 1904 6.613233 CGTTCTGAACATCTAACTACAGAGT 58.387 40.000 19.56 0.00 36.13 3.24
1513 1935 4.902443 TTGTGTCCTCGCAAATTACAAA 57.098 36.364 0.00 0.00 40.45 2.83
1524 1946 3.138304 TCCTGAAACATTTGTGTCCTCG 58.862 45.455 0.00 0.00 31.23 4.63
1547 1969 5.417580 GCAACACCATTACTATTTCCTCCAA 59.582 40.000 0.00 0.00 0.00 3.53
1596 2018 6.341316 TCAGTAGAAGAAGATACATGGCAAC 58.659 40.000 0.00 0.00 0.00 4.17
1597 2019 6.544928 TCAGTAGAAGAAGATACATGGCAA 57.455 37.500 0.00 0.00 0.00 4.52
1640 2074 2.175878 AAGTCTGCAGGCACTTACAG 57.824 50.000 22.50 0.00 40.35 2.74
1646 2080 4.731773 GCATACATTTAAGTCTGCAGGCAC 60.732 45.833 22.50 9.43 40.22 5.01
1658 2092 4.273235 CGCCATCACTCTGCATACATTTAA 59.727 41.667 0.00 0.00 0.00 1.52
1666 2115 2.893895 CGCGCCATCACTCTGCAT 60.894 61.111 0.00 0.00 0.00 3.96
1682 2131 1.375523 CTCTCCGTTTCAACCCCCG 60.376 63.158 0.00 0.00 0.00 5.73
1812 2316 3.813166 TCTTCGTTGTGGATTTCCTGAAC 59.187 43.478 0.00 0.62 36.82 3.18
1838 2346 5.551760 ATGAGAATTCGTGTGGACAATTC 57.448 39.130 0.00 0.00 36.96 2.17
1865 2411 1.993542 CACTTGTGCTGCAACAACAA 58.006 45.000 2.77 3.42 35.16 2.83
1930 2476 3.142951 TGCAGTGCAAAATTACTACGGT 58.857 40.909 17.26 0.00 34.76 4.83
2005 2580 6.260050 AGAATTGTTCAGCAAAAGAACGTCTA 59.740 34.615 0.00 0.00 46.34 2.59
2031 2606 1.205820 CATGTATGCAGCGATGGCG 59.794 57.895 1.46 0.00 46.35 5.69
2094 2709 0.248054 CGGGATCGTGGAAAAATGCG 60.248 55.000 0.00 0.00 0.00 4.73
2120 2735 2.729156 GCTCGACTGTAAAATGCAAGCC 60.729 50.000 0.00 0.00 0.00 4.35
2153 2777 2.871427 GCGCGAGGGCATTCGTAAG 61.871 63.158 12.10 5.82 42.38 2.34
2155 2779 3.833645 AGCGCGAGGGCATTCGTA 61.834 61.111 12.10 0.00 42.38 3.43
2327 2984 5.277857 AGGCTCGTAGCTATTATGTGTTT 57.722 39.130 0.00 0.00 41.99 2.83
2333 2990 3.370366 CGTCGTAGGCTCGTAGCTATTAT 59.630 47.826 0.00 0.00 41.99 1.28
2334 2991 2.733552 CGTCGTAGGCTCGTAGCTATTA 59.266 50.000 0.00 0.00 41.99 0.98
2336 2993 1.146637 CGTCGTAGGCTCGTAGCTAT 58.853 55.000 0.00 0.00 41.99 2.97
2343 3000 2.203972 TTTGGGTCGTCGTAGGCTCG 62.204 60.000 0.00 0.00 0.00 5.03
2344 3001 0.735287 GTTTGGGTCGTCGTAGGCTC 60.735 60.000 0.00 0.00 0.00 4.70
2345 3002 1.291272 GTTTGGGTCGTCGTAGGCT 59.709 57.895 0.00 0.00 0.00 4.58
2351 3008 2.735857 GGTCGGTTTGGGTCGTCG 60.736 66.667 0.00 0.00 0.00 5.12
2382 3039 2.561956 CGGTCACTCAGGTGGTCGT 61.562 63.158 0.00 0.00 43.17 4.34
2384 3041 0.894184 TCTCGGTCACTCAGGTGGTC 60.894 60.000 0.00 0.00 43.17 4.02
2390 3047 0.884514 TCTTGCTCTCGGTCACTCAG 59.115 55.000 0.00 0.00 0.00 3.35
2391 3048 1.474478 GATCTTGCTCTCGGTCACTCA 59.526 52.381 0.00 0.00 0.00 3.41
2392 3049 1.748493 AGATCTTGCTCTCGGTCACTC 59.252 52.381 0.00 0.00 0.00 3.51
2393 3050 1.846007 AGATCTTGCTCTCGGTCACT 58.154 50.000 0.00 0.00 0.00 3.41
2394 3051 2.663826 AAGATCTTGCTCTCGGTCAC 57.336 50.000 7.30 0.00 0.00 3.67
2395 3052 2.354103 CCAAAGATCTTGCTCTCGGTCA 60.354 50.000 9.17 0.00 0.00 4.02
2396 3053 2.275318 CCAAAGATCTTGCTCTCGGTC 58.725 52.381 9.17 0.00 0.00 4.79
2397 3054 2.393271 CCAAAGATCTTGCTCTCGGT 57.607 50.000 9.17 0.00 0.00 4.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.