Multiple sequence alignment - TraesCS3D01G341200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G341200 chr3D 100.000 6458 0 0 1 6458 454669422 454675879 0.000000e+00 11926.0
1 TraesCS3D01G341200 chr3B 94.061 3755 161 24 2158 5880 597451244 597454968 0.000000e+00 5642.0
2 TraesCS3D01G341200 chr3B 88.935 723 34 16 794 1507 597450247 597450932 0.000000e+00 850.0
3 TraesCS3D01G341200 chr3B 90.397 604 25 9 5872 6458 597459562 597460149 0.000000e+00 763.0
4 TraesCS3D01G341200 chr3B 95.349 43 2 0 1912 1954 597450926 597450968 1.160000e-07 69.4
5 TraesCS3D01G341200 chr3A 92.647 3971 184 53 1955 5878 596741159 596745068 0.000000e+00 5616.0
6 TraesCS3D01G341200 chr3A 92.845 601 25 4 5873 6458 596750336 596750933 0.000000e+00 856.0
7 TraesCS3D01G341200 chr3A 87.101 752 33 23 794 1507 596740354 596741079 0.000000e+00 793.0
8 TraesCS3D01G341200 chr3A 79.187 418 41 19 1508 1910 481877447 481877061 1.390000e-61 248.0
9 TraesCS3D01G341200 chr3A 97.059 34 1 0 1911 1944 596741072 596741105 2.520000e-04 58.4
10 TraesCS3D01G341200 chr7D 94.987 798 32 5 1 798 82466679 82467468 0.000000e+00 1245.0
11 TraesCS3D01G341200 chrUn 95.040 746 27 6 7 752 334692751 334693486 0.000000e+00 1164.0
12 TraesCS3D01G341200 chrUn 94.906 746 28 6 7 752 335124207 335123472 0.000000e+00 1158.0
13 TraesCS3D01G341200 chrUn 79.019 367 46 22 1543 1907 210626898 210627235 8.430000e-54 222.0
14 TraesCS3D01G341200 chrUn 79.019 367 46 22 1543 1907 403187397 403187734 8.430000e-54 222.0
15 TraesCS3D01G341200 chrUn 78.747 367 47 22 1543 1907 202167638 202167301 3.920000e-52 217.0
16 TraesCS3D01G341200 chrUn 78.747 367 47 22 1543 1907 384230404 384230741 3.920000e-52 217.0
17 TraesCS3D01G341200 chrUn 78.474 367 48 22 1543 1907 202188823 202188486 1.820000e-50 211.0
18 TraesCS3D01G341200 chrUn 83.036 112 15 3 687 796 101047504 101047613 1.480000e-16 99.0
19 TraesCS3D01G341200 chr7B 94.906 746 28 6 7 752 742762762 742762027 0.000000e+00 1158.0
20 TraesCS3D01G341200 chr7B 95.614 570 22 2 7 576 742802095 742801529 0.000000e+00 911.0
21 TraesCS3D01G341200 chr7B 82.126 414 54 11 1508 1907 510596882 510596475 2.880000e-88 337.0
22 TraesCS3D01G341200 chr7B 89.744 234 19 3 1 229 6362408 6362641 1.760000e-75 294.0
23 TraesCS3D01G341200 chr7A 93.949 314 19 0 1 314 699093191 699092878 5.860000e-130 475.0
24 TraesCS3D01G341200 chr4A 93.949 314 19 0 1 314 564700798 564700485 5.860000e-130 475.0
25 TraesCS3D01G341200 chr4A 83.036 112 17 2 687 797 127210459 127210349 4.120000e-17 100.0
26 TraesCS3D01G341200 chr5B 92.727 275 14 3 525 799 526574403 526574671 6.070000e-105 392.0
27 TraesCS3D01G341200 chr6B 83.249 394 47 13 1508 1886 88890786 88891175 1.720000e-90 344.0
28 TraesCS3D01G341200 chr6B 75.486 257 42 18 551 796 675798239 675797993 8.860000e-19 106.0
29 TraesCS3D01G341200 chr4D 80.964 415 59 12 1508 1907 3473012 3472603 1.750000e-80 311.0
30 TraesCS3D01G341200 chr4D 90.308 227 22 0 3 229 448214185 448213959 1.360000e-76 298.0
31 TraesCS3D01G341200 chr6D 79.391 427 68 17 1497 1908 144066026 144066447 3.810000e-72 283.0
32 TraesCS3D01G341200 chr2B 78.935 413 58 15 1508 1907 194390775 194390379 2.990000e-63 254.0
33 TraesCS3D01G341200 chr2B 79.798 198 23 12 1508 1694 11819291 11819100 1.890000e-25 128.0
34 TraesCS3D01G341200 chr2B 89.655 58 5 1 734 790 553657174 553657231 8.980000e-09 73.1
35 TraesCS3D01G341200 chr2B 86.567 67 7 2 733 797 776414958 776414892 8.980000e-09 73.1
36 TraesCS3D01G341200 chr4B 83.663 202 19 12 1508 1700 71595597 71595401 1.850000e-40 178.0
37 TraesCS3D01G341200 chr2D 75.179 419 62 16 1508 1910 9102268 9102660 6.700000e-35 159.0
38 TraesCS3D01G341200 chr2D 81.250 112 12 9 1508 1611 350766069 350766179 1.490000e-11 82.4
39 TraesCS3D01G341200 chr1B 92.000 50 4 0 747 796 590415364 590415315 3.230000e-08 71.3
40 TraesCS3D01G341200 chr1B 83.117 77 11 2 734 809 207853821 207853746 1.160000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G341200 chr3D 454669422 454675879 6457 False 11926.000000 11926 100.000000 1 6458 1 chr3D.!!$F1 6457
1 TraesCS3D01G341200 chr3B 597450247 597454968 4721 False 2187.133333 5642 92.781667 794 5880 3 chr3B.!!$F2 5086
2 TraesCS3D01G341200 chr3B 597459562 597460149 587 False 763.000000 763 90.397000 5872 6458 1 chr3B.!!$F1 586
3 TraesCS3D01G341200 chr3A 596740354 596745068 4714 False 2155.800000 5616 92.269000 794 5878 3 chr3A.!!$F2 5084
4 TraesCS3D01G341200 chr3A 596750336 596750933 597 False 856.000000 856 92.845000 5873 6458 1 chr3A.!!$F1 585
5 TraesCS3D01G341200 chr7D 82466679 82467468 789 False 1245.000000 1245 94.987000 1 798 1 chr7D.!!$F1 797
6 TraesCS3D01G341200 chrUn 334692751 334693486 735 False 1164.000000 1164 95.040000 7 752 1 chrUn.!!$F3 745
7 TraesCS3D01G341200 chrUn 335123472 335124207 735 True 1158.000000 1158 94.906000 7 752 1 chrUn.!!$R3 745
8 TraesCS3D01G341200 chr7B 742762027 742762762 735 True 1158.000000 1158 94.906000 7 752 1 chr7B.!!$R2 745
9 TraesCS3D01G341200 chr7B 742801529 742802095 566 True 911.000000 911 95.614000 7 576 1 chr7B.!!$R3 569

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
821 824 0.529773 TAATCATCACTGGCGGACGC 60.530 55.000 8.39 8.39 41.06 5.19 F
1640 1684 0.032952 CGTGTTCAGTTTCGAGGGGA 59.967 55.000 0.00 0.00 0.00 4.81 F
1808 1852 0.110486 AATGGGCACTCAGGTTTCGT 59.890 50.000 0.00 0.00 0.00 3.85 F
1906 1950 0.176449 GGGTGCTCCAATGCATTTCC 59.824 55.000 9.83 5.72 45.23 3.13 F
1907 1951 1.188863 GGTGCTCCAATGCATTTCCT 58.811 50.000 9.83 0.00 45.23 3.36 F
1908 1952 1.551883 GGTGCTCCAATGCATTTCCTT 59.448 47.619 9.83 0.00 45.23 3.36 F
3895 4080 1.134818 CCTACAGTATGAACAGGCGCA 60.135 52.381 10.83 0.00 39.69 6.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1742 1786 0.107214 ATTGGTGCCCGTGGTATCTG 60.107 55.000 0.00 0.0 0.00 2.90 R
2796 2949 1.573829 GCGCCGTTTTCCATCTCACA 61.574 55.000 0.00 0.0 0.00 3.58 R
3549 3711 2.100916 AGGTTGAACTAGCGCACGATAT 59.899 45.455 11.47 0.0 0.00 1.63 R
3871 4051 2.677037 GCCTGTTCATACTGTAGGCGTT 60.677 50.000 1.59 0.0 43.76 4.84 R
3895 4080 4.000988 GTGACCATAGGACGTGAATTTGT 58.999 43.478 0.00 0.0 0.00 2.83 R
3919 4105 5.182487 TCAGAACACTGCTTAAACACAGAA 58.818 37.500 6.77 0.0 37.35 3.02 R
5606 5800 0.310543 GCAGAATTTGTGGCGTGTCA 59.689 50.000 0.00 0.0 0.00 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
105 106 4.065088 TGTTTTGCTGGAACTAGCTAGTG 58.935 43.478 26.70 15.00 44.01 2.74
283 284 3.747529 GCAACCGGTGTTACTTTTAGCTA 59.252 43.478 8.52 0.00 32.09 3.32
324 325 3.557686 GCTTCAACCTGCCATTTTTGGAT 60.558 43.478 0.00 0.00 0.00 3.41
325 326 4.644498 CTTCAACCTGCCATTTTTGGATT 58.356 39.130 0.00 0.00 0.00 3.01
458 461 1.002134 CTGGAACCGGCCACATTCT 60.002 57.895 0.00 0.00 33.52 2.40
544 547 0.951040 GACAGGGACGACAAAGCTGG 60.951 60.000 0.00 0.00 0.00 4.85
821 824 0.529773 TAATCATCACTGGCGGACGC 60.530 55.000 8.39 8.39 41.06 5.19
822 825 2.244117 AATCATCACTGGCGGACGCT 62.244 55.000 16.72 0.00 41.60 5.07
823 826 1.391933 ATCATCACTGGCGGACGCTA 61.392 55.000 16.72 9.76 41.60 4.26
824 827 1.153647 CATCACTGGCGGACGCTAA 60.154 57.895 16.72 4.68 41.60 3.09
825 828 0.530650 CATCACTGGCGGACGCTAAT 60.531 55.000 16.72 0.00 41.60 1.73
826 829 0.530650 ATCACTGGCGGACGCTAATG 60.531 55.000 16.72 10.94 41.60 1.90
827 830 1.153647 CACTGGCGGACGCTAATGA 60.154 57.895 16.72 0.00 41.60 2.57
847 850 1.816863 AAAGCGCGAGAAGGAGACCA 61.817 55.000 12.10 0.00 0.00 4.02
879 882 4.806247 CAGCGGAGACCTTACTTAAATCTG 59.194 45.833 0.00 0.00 0.00 2.90
881 884 4.120589 CGGAGACCTTACTTAAATCTGCC 58.879 47.826 0.00 0.00 0.00 4.85
882 885 4.382685 CGGAGACCTTACTTAAATCTGCCA 60.383 45.833 0.00 0.00 0.00 4.92
884 887 4.844884 AGACCTTACTTAAATCTGCCACC 58.155 43.478 0.00 0.00 0.00 4.61
885 888 3.606687 ACCTTACTTAAATCTGCCACCG 58.393 45.455 0.00 0.00 0.00 4.94
886 889 2.943033 CCTTACTTAAATCTGCCACCGG 59.057 50.000 0.00 0.00 0.00 5.28
910 915 3.756082 ACACCAGGATCTTCTCTCTCT 57.244 47.619 0.00 0.00 0.00 3.10
911 916 3.631250 ACACCAGGATCTTCTCTCTCTC 58.369 50.000 0.00 0.00 0.00 3.20
912 917 3.011144 ACACCAGGATCTTCTCTCTCTCA 59.989 47.826 0.00 0.00 0.00 3.27
913 918 3.633525 CACCAGGATCTTCTCTCTCTCAG 59.366 52.174 0.00 0.00 0.00 3.35
952 957 4.166919 CCTCTGTTCCATTAAATCCCCTCT 59.833 45.833 0.00 0.00 0.00 3.69
955 960 6.209774 TCTGTTCCATTAAATCCCCTCTCTA 58.790 40.000 0.00 0.00 0.00 2.43
958 963 6.166982 GTTCCATTAAATCCCCTCTCTATCG 58.833 44.000 0.00 0.00 0.00 2.92
959 964 4.777896 TCCATTAAATCCCCTCTCTATCGG 59.222 45.833 0.00 0.00 0.00 4.18
1018 1032 1.153369 ATGCGGATTCCACGTGGAG 60.153 57.895 34.25 24.41 46.36 3.86
1189 1203 3.872511 TGGTACGCCGATTTCTTTAGA 57.127 42.857 0.00 0.00 37.67 2.10
1193 1207 5.105797 TGGTACGCCGATTTCTTTAGAACTA 60.106 40.000 0.00 0.00 37.67 2.24
1195 1209 5.069501 ACGCCGATTTCTTTAGAACTACT 57.930 39.130 0.00 0.00 33.13 2.57
1196 1210 5.476614 ACGCCGATTTCTTTAGAACTACTT 58.523 37.500 0.00 0.00 33.13 2.24
1197 1211 5.575995 ACGCCGATTTCTTTAGAACTACTTC 59.424 40.000 0.00 0.00 33.13 3.01
1199 1213 6.971184 CGCCGATTTCTTTAGAACTACTTCTA 59.029 38.462 0.00 0.00 37.87 2.10
1200 1214 7.648510 CGCCGATTTCTTTAGAACTACTTCTAT 59.351 37.037 0.00 0.00 38.54 1.98
1201 1215 9.315525 GCCGATTTCTTTAGAACTACTTCTATT 57.684 33.333 0.00 0.00 38.54 1.73
1210 1224 9.517609 TTTAGAACTACTTCTATTCGATTCAGC 57.482 33.333 0.00 0.00 38.54 4.26
1211 1225 7.101652 AGAACTACTTCTATTCGATTCAGCA 57.898 36.000 0.00 0.00 34.74 4.41
1212 1226 6.975772 AGAACTACTTCTATTCGATTCAGCAC 59.024 38.462 0.00 0.00 34.74 4.40
1231 1245 2.046023 AGCAGCATAGTGGCGCAA 60.046 55.556 10.83 0.00 39.27 4.85
1288 1302 3.916172 TGGTCTCGTCGTCGATTAAAAAG 59.084 43.478 5.00 0.00 45.21 2.27
1308 1329 0.249238 GAATCAGATGGCGAGCGAGT 60.249 55.000 0.00 0.00 0.00 4.18
1343 1364 1.021202 CAAGTGGCCTTTCGTGAACA 58.979 50.000 3.32 0.00 0.00 3.18
1385 1407 1.471119 CGAAGTGGGTACTAGGCTGA 58.529 55.000 0.00 0.00 35.69 4.26
1498 1542 1.338769 CCCTACTGCAGTTAAGCCGTT 60.339 52.381 27.06 0.00 33.86 4.44
1511 1555 4.778143 CCGTTCAGGCCGGGGAAG 62.778 72.222 2.18 0.00 41.78 3.46
1512 1556 3.702048 CGTTCAGGCCGGGGAAGA 61.702 66.667 2.18 0.00 0.00 2.87
1513 1557 2.269241 GTTCAGGCCGGGGAAGAG 59.731 66.667 2.18 0.00 0.00 2.85
1514 1558 3.009115 TTCAGGCCGGGGAAGAGG 61.009 66.667 2.18 0.00 0.00 3.69
1515 1559 3.556038 TTCAGGCCGGGGAAGAGGA 62.556 63.158 2.18 0.00 0.00 3.71
1516 1560 2.770048 CAGGCCGGGGAAGAGGAT 60.770 66.667 2.18 0.00 0.00 3.24
1517 1561 2.042930 AGGCCGGGGAAGAGGATT 59.957 61.111 2.18 0.00 0.00 3.01
1518 1562 1.619669 AGGCCGGGGAAGAGGATTT 60.620 57.895 2.18 0.00 0.00 2.17
1519 1563 1.453928 GGCCGGGGAAGAGGATTTG 60.454 63.158 2.18 0.00 0.00 2.32
1520 1564 1.303282 GCCGGGGAAGAGGATTTGT 59.697 57.895 2.18 0.00 0.00 2.83
1521 1565 1.032114 GCCGGGGAAGAGGATTTGTG 61.032 60.000 2.18 0.00 0.00 3.33
1522 1566 0.394352 CCGGGGAAGAGGATTTGTGG 60.394 60.000 0.00 0.00 0.00 4.17
1523 1567 1.032114 CGGGGAAGAGGATTTGTGGC 61.032 60.000 0.00 0.00 0.00 5.01
1524 1568 0.332972 GGGGAAGAGGATTTGTGGCT 59.667 55.000 0.00 0.00 0.00 4.75
1525 1569 1.683319 GGGGAAGAGGATTTGTGGCTC 60.683 57.143 0.00 0.00 0.00 4.70
1526 1570 1.283321 GGGAAGAGGATTTGTGGCTCT 59.717 52.381 0.00 0.00 0.00 4.09
1527 1571 2.637947 GGAAGAGGATTTGTGGCTCTC 58.362 52.381 0.00 0.00 0.00 3.20
1528 1572 2.275318 GAAGAGGATTTGTGGCTCTCG 58.725 52.381 0.00 0.00 0.00 4.04
1529 1573 0.539051 AGAGGATTTGTGGCTCTCGG 59.461 55.000 0.00 0.00 0.00 4.63
1530 1574 0.462759 GAGGATTTGTGGCTCTCGGG 60.463 60.000 0.00 0.00 0.00 5.14
1531 1575 1.201429 AGGATTTGTGGCTCTCGGGT 61.201 55.000 0.00 0.00 0.00 5.28
1532 1576 1.026718 GGATTTGTGGCTCTCGGGTG 61.027 60.000 0.00 0.00 0.00 4.61
1533 1577 1.648467 GATTTGTGGCTCTCGGGTGC 61.648 60.000 0.00 0.00 0.00 5.01
1547 1591 2.745884 GTGCCACACGCCATAGCA 60.746 61.111 0.00 0.00 39.83 3.49
1548 1592 2.114670 GTGCCACACGCCATAGCAT 61.115 57.895 0.00 0.00 39.83 3.79
1549 1593 1.378382 TGCCACACGCCATAGCATT 60.378 52.632 0.00 0.00 39.83 3.56
1550 1594 0.107459 TGCCACACGCCATAGCATTA 60.107 50.000 0.00 0.00 39.83 1.90
1551 1595 1.021202 GCCACACGCCATAGCATTAA 58.979 50.000 0.00 0.00 39.83 1.40
1552 1596 1.403679 GCCACACGCCATAGCATTAAA 59.596 47.619 0.00 0.00 39.83 1.52
1553 1597 2.159310 GCCACACGCCATAGCATTAAAA 60.159 45.455 0.00 0.00 39.83 1.52
1554 1598 3.674682 GCCACACGCCATAGCATTAAAAA 60.675 43.478 0.00 0.00 39.83 1.94
1604 1648 9.656040 TTCTGAAATTTTGGATATGAAACATGG 57.344 29.630 0.00 0.00 0.00 3.66
1605 1649 8.259411 TCTGAAATTTTGGATATGAAACATGGG 58.741 33.333 0.00 0.00 0.00 4.00
1606 1650 7.915930 TGAAATTTTGGATATGAAACATGGGT 58.084 30.769 0.00 0.00 0.00 4.51
1607 1651 9.040259 TGAAATTTTGGATATGAAACATGGGTA 57.960 29.630 0.00 0.00 0.00 3.69
1608 1652 9.313118 GAAATTTTGGATATGAAACATGGGTAC 57.687 33.333 0.00 0.00 0.00 3.34
1622 1666 3.406682 GGTACCCGTTGTAGACACG 57.593 57.895 0.00 0.00 0.00 4.49
1623 1667 0.598065 GGTACCCGTTGTAGACACGT 59.402 55.000 0.00 0.00 0.00 4.49
1624 1668 1.666888 GGTACCCGTTGTAGACACGTG 60.667 57.143 15.48 15.48 0.00 4.49
1625 1669 1.001378 GTACCCGTTGTAGACACGTGT 60.001 52.381 23.64 23.64 0.00 4.49
1626 1670 0.461135 ACCCGTTGTAGACACGTGTT 59.539 50.000 24.26 14.78 0.00 3.32
1627 1671 1.134226 CCCGTTGTAGACACGTGTTC 58.866 55.000 24.26 15.53 0.00 3.18
1628 1672 1.536496 CCCGTTGTAGACACGTGTTCA 60.536 52.381 24.26 18.48 0.00 3.18
1629 1673 1.784856 CCGTTGTAGACACGTGTTCAG 59.215 52.381 24.26 11.06 0.00 3.02
1630 1674 2.456989 CGTTGTAGACACGTGTTCAGT 58.543 47.619 24.26 10.56 0.00 3.41
1631 1675 2.855963 CGTTGTAGACACGTGTTCAGTT 59.144 45.455 24.26 8.98 0.00 3.16
1632 1676 3.305094 CGTTGTAGACACGTGTTCAGTTT 59.695 43.478 24.26 7.25 0.00 2.66
1633 1677 4.547587 CGTTGTAGACACGTGTTCAGTTTC 60.548 45.833 24.26 7.97 0.00 2.78
1634 1678 3.110358 TGTAGACACGTGTTCAGTTTCG 58.890 45.455 24.26 0.00 0.00 3.46
1635 1679 2.572191 AGACACGTGTTCAGTTTCGA 57.428 45.000 24.26 0.00 0.00 3.71
1636 1680 2.460918 AGACACGTGTTCAGTTTCGAG 58.539 47.619 24.26 0.00 0.00 4.04
1637 1681 1.521423 GACACGTGTTCAGTTTCGAGG 59.479 52.381 24.26 0.00 0.00 4.63
1638 1682 0.859232 CACGTGTTCAGTTTCGAGGG 59.141 55.000 7.58 0.00 0.00 4.30
1639 1683 0.249741 ACGTGTTCAGTTTCGAGGGG 60.250 55.000 0.00 0.00 0.00 4.79
1640 1684 0.032952 CGTGTTCAGTTTCGAGGGGA 59.967 55.000 0.00 0.00 0.00 4.81
1641 1685 1.539496 CGTGTTCAGTTTCGAGGGGAA 60.539 52.381 0.00 0.00 0.00 3.97
1642 1686 2.779506 GTGTTCAGTTTCGAGGGGAAT 58.220 47.619 0.00 0.00 33.85 3.01
1643 1687 2.484264 GTGTTCAGTTTCGAGGGGAATG 59.516 50.000 0.00 0.00 33.85 2.67
1644 1688 2.084546 GTTCAGTTTCGAGGGGAATGG 58.915 52.381 0.00 0.00 33.85 3.16
1645 1689 0.618458 TCAGTTTCGAGGGGAATGGG 59.382 55.000 0.00 0.00 33.85 4.00
1646 1690 0.328258 CAGTTTCGAGGGGAATGGGT 59.672 55.000 0.00 0.00 33.85 4.51
1647 1691 0.328258 AGTTTCGAGGGGAATGGGTG 59.672 55.000 0.00 0.00 33.85 4.61
1648 1692 1.001393 TTTCGAGGGGAATGGGTGC 60.001 57.895 0.00 0.00 33.85 5.01
1649 1693 2.493273 TTTCGAGGGGAATGGGTGCC 62.493 60.000 0.00 0.00 36.87 5.01
1650 1694 4.856801 CGAGGGGAATGGGTGCCG 62.857 72.222 0.00 0.00 39.07 5.69
1651 1695 4.506255 GAGGGGAATGGGTGCCGG 62.506 72.222 0.00 0.00 39.07 6.13
1655 1699 4.360405 GGAATGGGTGCCGGTGGT 62.360 66.667 1.90 0.00 0.00 4.16
1656 1700 2.672295 GAATGGGTGCCGGTGGTA 59.328 61.111 1.90 0.00 0.00 3.25
1657 1701 1.001887 GAATGGGTGCCGGTGGTAA 60.002 57.895 1.90 0.00 0.00 2.85
1658 1702 0.395173 GAATGGGTGCCGGTGGTAAT 60.395 55.000 1.90 0.00 0.00 1.89
1659 1703 0.682855 AATGGGTGCCGGTGGTAATG 60.683 55.000 1.90 0.00 0.00 1.90
1660 1704 1.858739 ATGGGTGCCGGTGGTAATGT 61.859 55.000 1.90 0.00 0.00 2.71
1661 1705 1.747745 GGGTGCCGGTGGTAATGTC 60.748 63.158 1.90 0.00 0.00 3.06
1662 1706 1.003112 GGTGCCGGTGGTAATGTCA 60.003 57.895 1.90 0.00 0.00 3.58
1663 1707 1.024579 GGTGCCGGTGGTAATGTCAG 61.025 60.000 1.90 0.00 0.00 3.51
1664 1708 0.321298 GTGCCGGTGGTAATGTCAGT 60.321 55.000 1.90 0.00 0.00 3.41
1665 1709 1.066716 GTGCCGGTGGTAATGTCAGTA 60.067 52.381 1.90 0.00 0.00 2.74
1666 1710 1.624312 TGCCGGTGGTAATGTCAGTAA 59.376 47.619 1.90 0.00 0.00 2.24
1667 1711 2.038689 TGCCGGTGGTAATGTCAGTAAA 59.961 45.455 1.90 0.00 0.00 2.01
1668 1712 3.075884 GCCGGTGGTAATGTCAGTAAAA 58.924 45.455 1.90 0.00 0.00 1.52
1669 1713 3.502979 GCCGGTGGTAATGTCAGTAAAAA 59.497 43.478 1.90 0.00 0.00 1.94
1734 1778 2.454055 CGTAAGTCGGACCGTATTTCC 58.546 52.381 14.79 4.00 35.71 3.13
1735 1779 2.098117 CGTAAGTCGGACCGTATTTCCT 59.902 50.000 14.79 0.00 35.71 3.36
1736 1780 3.312421 CGTAAGTCGGACCGTATTTCCTA 59.688 47.826 14.79 0.00 35.71 2.94
1737 1781 3.790152 AAGTCGGACCGTATTTCCTAC 57.210 47.619 14.79 1.59 0.00 3.18
1738 1782 7.952516 CGTAAGTCGGACCGTATTTCCTACG 62.953 52.000 14.79 13.50 42.99 3.51
1745 1789 2.203800 CGTATTTCCTACGCTGCAGA 57.796 50.000 20.43 0.00 45.96 4.26
1746 1790 2.743938 CGTATTTCCTACGCTGCAGAT 58.256 47.619 20.43 7.07 45.96 2.90
1747 1791 3.897325 CGTATTTCCTACGCTGCAGATA 58.103 45.455 20.43 7.97 45.96 1.98
1748 1792 3.669122 CGTATTTCCTACGCTGCAGATAC 59.331 47.826 20.43 12.32 45.96 2.24
1749 1793 2.596904 TTTCCTACGCTGCAGATACC 57.403 50.000 20.43 0.00 0.00 2.73
1750 1794 1.480789 TTCCTACGCTGCAGATACCA 58.519 50.000 20.43 0.00 0.00 3.25
1751 1795 0.744874 TCCTACGCTGCAGATACCAC 59.255 55.000 20.43 0.00 0.00 4.16
1752 1796 0.595053 CCTACGCTGCAGATACCACG 60.595 60.000 20.43 12.87 0.00 4.94
1753 1797 0.595053 CTACGCTGCAGATACCACGG 60.595 60.000 20.43 0.00 0.00 4.94
1754 1798 2.011741 TACGCTGCAGATACCACGGG 62.012 60.000 20.43 0.00 0.00 5.28
1755 1799 2.897350 GCTGCAGATACCACGGGC 60.897 66.667 20.43 0.00 0.00 6.13
1756 1800 2.584064 CTGCAGATACCACGGGCA 59.416 61.111 8.42 0.00 0.00 5.36
1757 1801 1.815421 CTGCAGATACCACGGGCAC 60.815 63.158 8.42 0.00 0.00 5.01
1770 1814 4.206697 GGCACCAATTCCCCACAA 57.793 55.556 0.00 0.00 0.00 3.33
1771 1815 2.446512 GGCACCAATTCCCCACAAA 58.553 52.632 0.00 0.00 0.00 2.83
1772 1816 0.761802 GGCACCAATTCCCCACAAAA 59.238 50.000 0.00 0.00 0.00 2.44
1773 1817 1.141858 GGCACCAATTCCCCACAAAAA 59.858 47.619 0.00 0.00 0.00 1.94
1774 1818 2.224744 GGCACCAATTCCCCACAAAAAT 60.225 45.455 0.00 0.00 0.00 1.82
1775 1819 2.813172 GCACCAATTCCCCACAAAAATG 59.187 45.455 0.00 0.00 0.00 2.32
1776 1820 3.495806 GCACCAATTCCCCACAAAAATGA 60.496 43.478 0.00 0.00 0.00 2.57
1777 1821 4.712476 CACCAATTCCCCACAAAAATGAA 58.288 39.130 0.00 0.00 0.00 2.57
1778 1822 4.514816 CACCAATTCCCCACAAAAATGAAC 59.485 41.667 0.00 0.00 0.00 3.18
1779 1823 4.164988 ACCAATTCCCCACAAAAATGAACA 59.835 37.500 0.00 0.00 0.00 3.18
1780 1824 4.514816 CCAATTCCCCACAAAAATGAACAC 59.485 41.667 0.00 0.00 0.00 3.32
1781 1825 3.444703 TTCCCCACAAAAATGAACACG 57.555 42.857 0.00 0.00 0.00 4.49
1782 1826 1.683917 TCCCCACAAAAATGAACACGG 59.316 47.619 0.00 0.00 0.00 4.94
1783 1827 1.270041 CCCCACAAAAATGAACACGGG 60.270 52.381 0.00 0.00 0.00 5.28
1784 1828 1.410882 CCCACAAAAATGAACACGGGT 59.589 47.619 0.00 0.00 0.00 5.28
1785 1829 2.623889 CCCACAAAAATGAACACGGGTA 59.376 45.455 0.00 0.00 0.00 3.69
1786 1830 3.257127 CCCACAAAAATGAACACGGGTAT 59.743 43.478 0.00 0.00 0.00 2.73
1787 1831 4.459685 CCCACAAAAATGAACACGGGTATA 59.540 41.667 0.00 0.00 0.00 1.47
1788 1832 5.395642 CCACAAAAATGAACACGGGTATAC 58.604 41.667 0.00 0.00 0.00 1.47
1789 1833 5.048643 CCACAAAAATGAACACGGGTATACA 60.049 40.000 5.01 0.00 0.00 2.29
1790 1834 6.439599 CACAAAAATGAACACGGGTATACAA 58.560 36.000 5.01 0.00 0.00 2.41
1791 1835 7.087639 CACAAAAATGAACACGGGTATACAAT 58.912 34.615 5.01 0.00 0.00 2.71
1792 1836 7.061673 CACAAAAATGAACACGGGTATACAATG 59.938 37.037 5.01 2.19 0.00 2.82
1793 1837 5.828299 AAATGAACACGGGTATACAATGG 57.172 39.130 5.01 0.00 0.00 3.16
1794 1838 3.269538 TGAACACGGGTATACAATGGG 57.730 47.619 5.01 0.00 0.00 4.00
1795 1839 1.944709 GAACACGGGTATACAATGGGC 59.055 52.381 5.01 0.00 0.00 5.36
1796 1840 0.913205 ACACGGGTATACAATGGGCA 59.087 50.000 5.01 0.00 0.00 5.36
1797 1841 1.305201 CACGGGTATACAATGGGCAC 58.695 55.000 5.01 0.00 0.00 5.01
1798 1842 1.134220 CACGGGTATACAATGGGCACT 60.134 52.381 5.01 0.00 0.00 4.40
1799 1843 1.140252 ACGGGTATACAATGGGCACTC 59.860 52.381 5.01 0.00 0.00 3.51
1800 1844 1.140052 CGGGTATACAATGGGCACTCA 59.860 52.381 5.01 0.00 0.00 3.41
1801 1845 2.806745 CGGGTATACAATGGGCACTCAG 60.807 54.545 5.01 0.00 0.00 3.35
1802 1846 2.487265 GGGTATACAATGGGCACTCAGG 60.487 54.545 5.01 0.00 0.00 3.86
1803 1847 2.172717 GGTATACAATGGGCACTCAGGT 59.827 50.000 5.01 0.00 0.00 4.00
1804 1848 3.371595 GGTATACAATGGGCACTCAGGTT 60.372 47.826 5.01 0.00 0.00 3.50
1805 1849 2.969821 TACAATGGGCACTCAGGTTT 57.030 45.000 0.00 0.00 0.00 3.27
1806 1850 1.620822 ACAATGGGCACTCAGGTTTC 58.379 50.000 0.00 0.00 0.00 2.78
1807 1851 0.523072 CAATGGGCACTCAGGTTTCG 59.477 55.000 0.00 0.00 0.00 3.46
1808 1852 0.110486 AATGGGCACTCAGGTTTCGT 59.890 50.000 0.00 0.00 0.00 3.85
1809 1853 0.981183 ATGGGCACTCAGGTTTCGTA 59.019 50.000 0.00 0.00 0.00 3.43
1810 1854 0.981183 TGGGCACTCAGGTTTCGTAT 59.019 50.000 0.00 0.00 0.00 3.06
1811 1855 1.066430 TGGGCACTCAGGTTTCGTATC 60.066 52.381 0.00 0.00 0.00 2.24
1812 1856 1.653151 GGCACTCAGGTTTCGTATCC 58.347 55.000 0.00 0.00 0.00 2.59
1813 1857 1.653151 GCACTCAGGTTTCGTATCCC 58.347 55.000 0.00 0.00 0.00 3.85
1814 1858 1.066430 GCACTCAGGTTTCGTATCCCA 60.066 52.381 0.00 0.00 0.00 4.37
1815 1859 2.614481 GCACTCAGGTTTCGTATCCCAA 60.614 50.000 0.00 0.00 0.00 4.12
1816 1860 3.670625 CACTCAGGTTTCGTATCCCAAA 58.329 45.455 0.00 0.00 0.00 3.28
1817 1861 4.069304 CACTCAGGTTTCGTATCCCAAAA 58.931 43.478 0.00 0.00 0.00 2.44
1818 1862 4.700213 CACTCAGGTTTCGTATCCCAAAAT 59.300 41.667 0.00 0.00 0.00 1.82
1819 1863 5.183140 CACTCAGGTTTCGTATCCCAAAATT 59.817 40.000 0.00 0.00 0.00 1.82
1820 1864 5.773176 ACTCAGGTTTCGTATCCCAAAATTT 59.227 36.000 0.00 0.00 0.00 1.82
1821 1865 6.072119 ACTCAGGTTTCGTATCCCAAAATTTC 60.072 38.462 0.00 0.00 0.00 2.17
1822 1866 5.770663 TCAGGTTTCGTATCCCAAAATTTCA 59.229 36.000 0.00 0.00 0.00 2.69
1823 1867 5.861787 CAGGTTTCGTATCCCAAAATTTCAC 59.138 40.000 0.00 0.00 0.00 3.18
1824 1868 5.536916 AGGTTTCGTATCCCAAAATTTCACA 59.463 36.000 0.00 0.00 0.00 3.58
1825 1869 6.210584 AGGTTTCGTATCCCAAAATTTCACAT 59.789 34.615 0.00 0.00 0.00 3.21
1826 1870 6.871492 GGTTTCGTATCCCAAAATTTCACATT 59.129 34.615 0.00 0.00 0.00 2.71
1827 1871 7.386573 GGTTTCGTATCCCAAAATTTCACATTT 59.613 33.333 0.00 0.00 0.00 2.32
1828 1872 8.769891 GTTTCGTATCCCAAAATTTCACATTTT 58.230 29.630 0.00 0.00 0.00 1.82
1829 1873 8.894768 TTCGTATCCCAAAATTTCACATTTTT 57.105 26.923 0.00 0.00 0.00 1.94
1875 1919 9.890915 TTTTGGATGCTATTTTTATATAGGGGT 57.109 29.630 0.00 0.00 0.00 4.95
1876 1920 8.877864 TTGGATGCTATTTTTATATAGGGGTG 57.122 34.615 0.00 0.00 0.00 4.61
1877 1921 7.995663 TGGATGCTATTTTTATATAGGGGTGT 58.004 34.615 0.00 0.00 0.00 4.16
1878 1922 7.888021 TGGATGCTATTTTTATATAGGGGTGTG 59.112 37.037 0.00 0.00 0.00 3.82
1879 1923 7.888546 GGATGCTATTTTTATATAGGGGTGTGT 59.111 37.037 0.00 0.00 0.00 3.72
1880 1924 8.635765 ATGCTATTTTTATATAGGGGTGTGTG 57.364 34.615 0.00 0.00 0.00 3.82
1881 1925 7.001674 TGCTATTTTTATATAGGGGTGTGTGG 58.998 38.462 0.00 0.00 0.00 4.17
1882 1926 6.072119 GCTATTTTTATATAGGGGTGTGTGGC 60.072 42.308 0.00 0.00 0.00 5.01
1883 1927 4.864483 TTTTATATAGGGGTGTGTGGCA 57.136 40.909 0.00 0.00 0.00 4.92
1884 1928 3.849563 TTATATAGGGGTGTGTGGCAC 57.150 47.619 11.55 11.55 46.97 5.01
1899 1943 4.007457 CACCTGGGTGCTCCAATG 57.993 61.111 7.20 0.00 46.51 2.82
1900 1944 2.036256 ACCTGGGTGCTCCAATGC 59.964 61.111 7.20 0.00 46.51 3.56
1901 1945 2.036098 CCTGGGTGCTCCAATGCA 59.964 61.111 7.20 0.00 46.51 3.96
1902 1946 1.380785 CCTGGGTGCTCCAATGCAT 60.381 57.895 7.20 0.00 46.51 3.96
1903 1947 0.974010 CCTGGGTGCTCCAATGCATT 60.974 55.000 5.99 5.99 46.51 3.56
1904 1948 0.899720 CTGGGTGCTCCAATGCATTT 59.100 50.000 9.83 0.00 46.51 2.32
1905 1949 0.896923 TGGGTGCTCCAATGCATTTC 59.103 50.000 9.83 0.13 45.23 2.17
1906 1950 0.176449 GGGTGCTCCAATGCATTTCC 59.824 55.000 9.83 5.72 45.23 3.13
1907 1951 1.188863 GGTGCTCCAATGCATTTCCT 58.811 50.000 9.83 0.00 45.23 3.36
1908 1952 1.551883 GGTGCTCCAATGCATTTCCTT 59.448 47.619 9.83 0.00 45.23 3.36
1909 1953 2.027837 GGTGCTCCAATGCATTTCCTTT 60.028 45.455 9.83 0.00 45.23 3.11
1910 1954 3.256558 GTGCTCCAATGCATTTCCTTTC 58.743 45.455 9.83 0.00 45.23 2.62
1911 1955 2.898612 TGCTCCAATGCATTTCCTTTCA 59.101 40.909 9.83 0.71 38.12 2.69
1912 1956 3.056393 TGCTCCAATGCATTTCCTTTCAG 60.056 43.478 9.83 0.00 38.12 3.02
1913 1957 3.677976 GCTCCAATGCATTTCCTTTCAGG 60.678 47.826 9.83 5.50 36.46 3.86
1914 1958 3.765511 CTCCAATGCATTTCCTTTCAGGA 59.234 43.478 9.83 9.74 44.10 3.86
1954 2006 2.802724 GGTGGTGGGGGTGCAAAAC 61.803 63.158 0.00 0.00 0.00 2.43
1955 2007 2.835431 TGGTGGGGGTGCAAAACG 60.835 61.111 0.00 0.00 0.00 3.60
1956 2008 4.293648 GGTGGGGGTGCAAAACGC 62.294 66.667 0.00 0.00 40.94 4.84
1957 2009 3.223589 GTGGGGGTGCAAAACGCT 61.224 61.111 0.00 0.00 43.06 5.07
1959 2011 2.597510 GGGGGTGCAAAACGCTCT 60.598 61.111 0.00 0.00 43.06 4.09
1960 2012 2.200337 GGGGGTGCAAAACGCTCTT 61.200 57.895 0.00 0.00 43.06 2.85
1965 2053 2.267426 GGTGCAAAACGCTCTTTTGTT 58.733 42.857 14.49 0.00 43.06 2.83
2059 2147 6.204359 TCTTTAGTAATATCCGTCGTTCTGC 58.796 40.000 0.00 0.00 0.00 4.26
2061 2149 6.866010 TTAGTAATATCCGTCGTTCTGCTA 57.134 37.500 0.00 0.00 0.00 3.49
2109 2197 3.275848 AGCTGGGCCTACTATTGGATA 57.724 47.619 4.53 0.00 0.00 2.59
2187 2331 6.874278 TTTGAGGATAAGAAGTGATCAGGA 57.126 37.500 0.00 0.00 0.00 3.86
2209 2361 6.936900 AGGATTAATGGTGTACATGCTACATC 59.063 38.462 0.00 10.14 40.44 3.06
2325 2477 7.541162 AGGTCACAAATGATTCATGTACAATG 58.459 34.615 0.00 0.00 37.14 2.82
2326 2478 7.177216 AGGTCACAAATGATTCATGTACAATGT 59.823 33.333 0.00 0.00 37.14 2.71
2700 2853 8.865244 AGTACTTATGAAGGGTTCCCTTATAA 57.135 34.615 21.40 20.00 45.52 0.98
2707 2860 8.909423 ATGAAGGGTTCCCTTATAATTTTCAA 57.091 30.769 21.40 1.31 45.52 2.69
2713 2866 8.057011 GGGTTCCCTTATAATTTTCAAGTCCTA 58.943 37.037 0.00 0.00 0.00 2.94
2777 2930 7.201582 CGTTGTTGTTTTATCCACCTATACTCC 60.202 40.741 0.00 0.00 0.00 3.85
2917 3070 8.713737 TCTGTTCTAGTCTTCAAATCATCATG 57.286 34.615 0.00 0.00 0.00 3.07
2918 3071 7.767659 TCTGTTCTAGTCTTCAAATCATCATGG 59.232 37.037 0.00 0.00 0.00 3.66
2919 3072 7.623630 TGTTCTAGTCTTCAAATCATCATGGA 58.376 34.615 0.00 0.00 0.00 3.41
2920 3073 7.767659 TGTTCTAGTCTTCAAATCATCATGGAG 59.232 37.037 0.00 0.00 0.00 3.86
2921 3074 7.429374 TCTAGTCTTCAAATCATCATGGAGT 57.571 36.000 0.00 0.00 0.00 3.85
2922 3075 7.855375 TCTAGTCTTCAAATCATCATGGAGTT 58.145 34.615 0.00 0.00 0.00 3.01
2982 3135 4.278669 TCGACTATCCTCAAACCTCTATGC 59.721 45.833 0.00 0.00 0.00 3.14
3196 3349 8.943594 TTAAGGAGATTAAAAAGGTTTGGCTA 57.056 30.769 0.00 0.00 30.28 3.93
3200 3353 8.531982 AGGAGATTAAAAAGGTTTGGCTATTTC 58.468 33.333 0.00 0.00 0.00 2.17
3202 3355 9.574458 GAGATTAAAAAGGTTTGGCTATTTCTC 57.426 33.333 0.00 0.00 0.00 2.87
3204 3357 9.358872 GATTAAAAAGGTTTGGCTATTTCTCTG 57.641 33.333 0.00 0.00 0.00 3.35
3205 3358 4.790765 AAAGGTTTGGCTATTTCTCTGC 57.209 40.909 0.00 0.00 0.00 4.26
3413 3574 8.738645 AAATACCTTGGTATGTGAGAAATCTC 57.261 34.615 12.51 3.43 43.15 2.75
3415 3576 4.080299 ACCTTGGTATGTGAGAAATCTCCC 60.080 45.833 7.91 2.47 42.20 4.30
3433 3594 4.289672 TCTCCCTGGAATTATAAGATGGCC 59.710 45.833 0.00 0.00 0.00 5.36
3453 3614 6.413892 TGGCCATTTGATTTTTCCTAAATCC 58.586 36.000 0.00 0.00 36.17 3.01
3471 3632 7.850982 CCTAAATCCTTTGTTTCATCGATAACG 59.149 37.037 0.00 0.00 41.26 3.18
3549 3711 4.937620 GTGGAACAGAATGATGAGCAGTAA 59.062 41.667 0.00 0.00 41.80 2.24
3554 3716 7.148672 GGAACAGAATGATGAGCAGTAATATCG 60.149 40.741 0.00 0.00 39.69 2.92
3645 3825 5.578005 TCCAGTGTCAGTACTATGCTAAC 57.422 43.478 0.00 0.00 0.00 2.34
3730 3910 7.308229 GCCTGAAAGATATAATTGCAGTACCAG 60.308 40.741 7.17 0.00 32.21 4.00
3871 4051 5.776173 TTTGAAATAAAACTGCGAGGGAA 57.224 34.783 0.00 0.00 0.00 3.97
3874 4054 3.824414 AATAAAACTGCGAGGGAAACG 57.176 42.857 0.00 0.00 0.00 3.60
3895 4080 1.134818 CCTACAGTATGAACAGGCGCA 60.135 52.381 10.83 0.00 39.69 6.09
3919 4105 4.553330 AATTCACGTCCTATGGTCACTT 57.447 40.909 0.00 0.00 0.00 3.16
3960 4146 5.937975 TCTGAGTTCCATGTGTATCATCA 57.062 39.130 0.00 0.00 34.09 3.07
4205 4392 5.731957 ACTTCTTTTCACTCTCCTAGGAC 57.268 43.478 7.62 0.00 0.00 3.85
4369 4556 7.064371 TGTTCATGCAAATTATTCATTTTCCCG 59.936 33.333 0.00 0.00 32.24 5.14
4371 4558 7.776107 TCATGCAAATTATTCATTTTCCCGTA 58.224 30.769 0.00 0.00 32.24 4.02
4431 4619 2.552315 CGTAACATGGCAGGACAAACTT 59.448 45.455 5.99 0.00 0.00 2.66
4536 4724 3.127030 GTGAAATTGCTTTAGAGGACCCG 59.873 47.826 0.00 0.00 0.00 5.28
4560 4748 5.749596 TTCATGTCGACATCACAAAACTT 57.250 34.783 27.79 1.19 33.61 2.66
4690 4878 7.117812 TCGGATAAACTCTGTTCTTGATTTCAC 59.882 37.037 0.00 0.00 0.00 3.18
4716 4904 2.158608 CCAGGTTGTCAAGGTCCTTTCT 60.159 50.000 0.00 0.00 0.00 2.52
4757 4945 4.702612 TGTGCCTTTCAAGTTGAACTACAA 59.297 37.500 17.85 2.42 35.89 2.41
4775 4963 3.454375 ACAACGTCGAATCAGTTCAGTT 58.546 40.909 0.00 0.00 33.86 3.16
4854 5042 2.783333 GAAGGACACGACGATGACTAC 58.217 52.381 0.00 0.00 0.00 2.73
4884 5072 4.767255 CAGTGGCCGGTGGAGCTC 62.767 72.222 4.71 4.71 0.00 4.09
4980 5168 3.949754 ACCTATTCACTGTATCCGAACGA 59.050 43.478 0.00 0.00 0.00 3.85
4981 5169 4.036498 ACCTATTCACTGTATCCGAACGAG 59.964 45.833 0.00 0.00 0.00 4.18
4982 5170 2.273370 TTCACTGTATCCGAACGAGC 57.727 50.000 0.00 0.00 0.00 5.03
4985 5173 3.011818 TCACTGTATCCGAACGAGCTTA 58.988 45.455 0.00 0.00 0.00 3.09
4986 5174 3.064958 TCACTGTATCCGAACGAGCTTAG 59.935 47.826 0.00 0.00 0.00 2.18
4987 5175 2.223525 ACTGTATCCGAACGAGCTTAGC 60.224 50.000 0.00 0.00 0.00 3.09
4988 5176 2.022195 TGTATCCGAACGAGCTTAGCT 58.978 47.619 6.37 6.37 43.88 3.32
4995 5183 5.839621 TCCGAACGAGCTTAGCTTAATTAT 58.160 37.500 8.58 0.00 39.88 1.28
5003 5191 6.564873 CGAGCTTAGCTTAATTATGGAGTTGC 60.565 42.308 8.58 0.00 39.88 4.17
5084 5272 2.095843 GACGCGTTCATCGGCAAC 59.904 61.111 15.53 0.00 40.26 4.17
5367 5555 2.098934 TGCTGACCATGTTTGTGTGTTC 59.901 45.455 0.00 0.00 0.00 3.18
5454 5642 1.442017 GCCACCGATTGACGCAAAC 60.442 57.895 0.00 0.00 41.07 2.93
5471 5662 6.427150 ACGCAAACTAGAAAATACACAAGTG 58.573 36.000 0.00 0.00 0.00 3.16
5536 5727 3.318839 TGCTGTTTCCCTTGAGACAAATG 59.681 43.478 0.00 0.00 35.41 2.32
5538 5729 4.037923 GCTGTTTCCCTTGAGACAAATGAA 59.962 41.667 0.00 0.00 35.41 2.57
5590 5784 2.024414 GAGTTACATTGGGGGATGCAC 58.976 52.381 0.00 0.00 0.00 4.57
5595 5789 0.756442 CATTGGGGGATGCACGGATT 60.756 55.000 0.00 0.00 0.00 3.01
5606 5800 1.513158 CACGGATTCTCGCTGGAGT 59.487 57.895 0.00 0.00 41.26 3.85
5757 5954 4.926238 AGCAAACTCTCGTGAGATTTGTAG 59.074 41.667 25.48 12.47 42.73 2.74
5763 5960 7.450124 ACTCTCGTGAGATTTGTAGACTTTA 57.550 36.000 20.64 0.00 42.73 1.85
5766 5963 7.306213 TCTCGTGAGATTTGTAGACTTTAGTG 58.694 38.462 0.00 0.00 40.84 2.74
5919 6117 2.276201 CATTTGCTTGGGTCGATCGTA 58.724 47.619 15.94 0.00 0.00 3.43
5975 6174 3.009473 ACAGAATAAGCTGGCTGAAAGGA 59.991 43.478 11.01 0.00 40.20 3.36
6059 6258 5.589192 CGTACTTAGCCTACTTAACATGCT 58.411 41.667 0.00 0.00 36.11 3.79
6205 6413 2.096442 TGACAGCTGCTCATTCGCG 61.096 57.895 15.27 0.00 0.00 5.87
6258 6472 7.332003 TGTGCAAGAACTTTTAATTAATGCG 57.668 32.000 11.18 1.92 34.16 4.73
6368 6582 5.353111 TGAAGTGTTGTCGTGTGATTTAGA 58.647 37.500 0.00 0.00 0.00 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
97 98 9.720769 AAAAGATAGTAGCAAAAACACTAGCTA 57.279 29.630 0.00 0.00 39.81 3.32
238 239 4.217118 CAGCAAAAAGTCACTAATCCAGCT 59.783 41.667 0.00 0.00 0.00 4.24
283 284 7.681939 TGAAGCAAAAATATTAGTCGGTTCT 57.318 32.000 14.65 0.00 32.26 3.01
346 348 0.904649 TAGCACCACTGTGATCCAGG 59.095 55.000 9.86 0.00 45.76 4.45
358 360 0.243907 GCTGTCTTCGACTAGCACCA 59.756 55.000 11.06 0.00 37.00 4.17
405 407 4.817464 ACAGTCGTATGGTTGTAGCAAAAA 59.183 37.500 0.00 0.00 0.00 1.94
458 461 1.822371 TGCAGTCGATGGCTGTAACTA 59.178 47.619 11.74 0.00 36.42 2.24
521 524 1.937108 GCTTTGTCGTCCCTGTCTCAG 60.937 57.143 0.00 0.00 0.00 3.35
600 603 3.376935 CTGTCGGGCTCCTTCGCAT 62.377 63.158 0.00 0.00 0.00 4.73
680 683 2.454538 TCCTTCGTCCCTAACCTTCTC 58.545 52.381 0.00 0.00 0.00 2.87
681 684 2.617840 TCCTTCGTCCCTAACCTTCT 57.382 50.000 0.00 0.00 0.00 2.85
791 794 4.038402 CCAGTGATGATTAAATGAAGGGCC 59.962 45.833 0.00 0.00 0.00 5.80
821 824 2.930040 TCCTTCTCGCGCTTTTCATTAG 59.070 45.455 5.56 0.00 0.00 1.73
822 825 2.930040 CTCCTTCTCGCGCTTTTCATTA 59.070 45.455 5.56 0.00 0.00 1.90
823 826 1.734465 CTCCTTCTCGCGCTTTTCATT 59.266 47.619 5.56 0.00 0.00 2.57
824 827 1.066858 TCTCCTTCTCGCGCTTTTCAT 60.067 47.619 5.56 0.00 0.00 2.57
825 828 0.317160 TCTCCTTCTCGCGCTTTTCA 59.683 50.000 5.56 0.00 0.00 2.69
826 829 0.716666 GTCTCCTTCTCGCGCTTTTC 59.283 55.000 5.56 0.00 0.00 2.29
827 830 0.670854 GGTCTCCTTCTCGCGCTTTT 60.671 55.000 5.56 0.00 0.00 2.27
847 850 1.625818 AGGTCTCCGCTGAAATCAGTT 59.374 47.619 11.77 0.00 45.45 3.16
881 884 3.605749 ATCCTGGTGTTCGCCGGTG 62.606 63.158 9.28 9.28 33.07 4.94
882 885 3.310860 GATCCTGGTGTTCGCCGGT 62.311 63.158 1.90 0.00 33.07 5.28
884 887 1.079127 AAGATCCTGGTGTTCGCCG 60.079 57.895 0.00 0.00 0.00 6.46
885 888 0.250513 AGAAGATCCTGGTGTTCGCC 59.749 55.000 0.00 0.00 0.00 5.54
886 889 1.205893 AGAGAAGATCCTGGTGTTCGC 59.794 52.381 0.00 0.00 0.00 4.70
887 890 2.757868 AGAGAGAAGATCCTGGTGTTCG 59.242 50.000 0.00 0.00 0.00 3.95
888 891 4.023291 AGAGAGAGAAGATCCTGGTGTTC 58.977 47.826 0.00 0.00 0.00 3.18
890 893 3.011144 TGAGAGAGAGAAGATCCTGGTGT 59.989 47.826 0.00 0.00 0.00 4.16
891 894 3.630168 TGAGAGAGAGAAGATCCTGGTG 58.370 50.000 0.00 0.00 0.00 4.17
892 895 3.373001 CCTGAGAGAGAGAAGATCCTGGT 60.373 52.174 0.00 0.00 0.00 4.00
893 896 3.225104 CCTGAGAGAGAGAAGATCCTGG 58.775 54.545 0.00 0.00 0.00 4.45
910 915 1.252175 GATCTCTATCCGCTGCCTGA 58.748 55.000 0.00 0.00 0.00 3.86
911 916 0.246086 GGATCTCTATCCGCTGCCTG 59.754 60.000 0.00 0.00 42.41 4.85
912 917 2.664825 GGATCTCTATCCGCTGCCT 58.335 57.895 0.00 0.00 42.41 4.75
944 949 0.410270 GGGACCGATAGAGAGGGGAT 59.590 60.000 0.00 0.00 39.76 3.85
1112 1126 2.435586 CTTCGGTGCCTCCTGCTG 60.436 66.667 0.00 0.00 42.00 4.41
1113 1127 2.177594 CTTCTTCGGTGCCTCCTGCT 62.178 60.000 0.00 0.00 42.00 4.24
1114 1128 1.743252 CTTCTTCGGTGCCTCCTGC 60.743 63.158 0.00 0.00 41.77 4.85
1127 1141 1.977293 GATGCCGCCTCCTCCTTCTT 61.977 60.000 0.00 0.00 0.00 2.52
1162 1176 0.884704 AATCGGCGTACCATGATGCC 60.885 55.000 6.85 7.44 46.44 4.40
1189 1203 6.043411 GGTGCTGAATCGAATAGAAGTAGTT 58.957 40.000 0.00 0.00 0.00 2.24
1193 1207 4.437239 CTGGTGCTGAATCGAATAGAAGT 58.563 43.478 0.00 0.00 0.00 3.01
1195 1209 3.198068 GCTGGTGCTGAATCGAATAGAA 58.802 45.455 0.00 0.00 36.03 2.10
1196 1210 2.168313 TGCTGGTGCTGAATCGAATAGA 59.832 45.455 0.00 0.00 40.48 1.98
1197 1211 2.543012 CTGCTGGTGCTGAATCGAATAG 59.457 50.000 0.00 0.00 40.01 1.73
1199 1213 1.376543 CTGCTGGTGCTGAATCGAAT 58.623 50.000 0.00 0.00 40.01 3.34
1200 1214 1.300971 GCTGCTGGTGCTGAATCGAA 61.301 55.000 0.00 0.00 40.01 3.71
1201 1215 1.742880 GCTGCTGGTGCTGAATCGA 60.743 57.895 0.00 0.00 40.01 3.59
1202 1216 1.374343 ATGCTGCTGGTGCTGAATCG 61.374 55.000 0.00 0.00 40.01 3.34
1203 1217 1.602851 CTATGCTGCTGGTGCTGAATC 59.397 52.381 0.00 0.00 37.53 2.52
1204 1218 1.064906 ACTATGCTGCTGGTGCTGAAT 60.065 47.619 0.00 0.00 39.36 2.57
1205 1219 0.325933 ACTATGCTGCTGGTGCTGAA 59.674 50.000 0.00 0.00 40.01 3.02
1206 1220 0.392060 CACTATGCTGCTGGTGCTGA 60.392 55.000 0.00 0.00 40.01 4.26
1207 1221 1.374343 CCACTATGCTGCTGGTGCTG 61.374 60.000 0.00 0.00 40.48 4.41
1208 1222 1.077930 CCACTATGCTGCTGGTGCT 60.078 57.895 0.00 0.00 40.48 4.40
1209 1223 2.768492 GCCACTATGCTGCTGGTGC 61.768 63.158 0.00 1.22 40.20 5.01
1210 1224 2.466982 CGCCACTATGCTGCTGGTG 61.467 63.158 0.00 2.84 0.00 4.17
1211 1225 2.124983 CGCCACTATGCTGCTGGT 60.125 61.111 0.00 0.00 0.00 4.00
1212 1226 3.580193 GCGCCACTATGCTGCTGG 61.580 66.667 0.00 0.72 0.00 4.85
1231 1245 3.685139 ATCTCAACTCAATCACCACGT 57.315 42.857 0.00 0.00 0.00 4.49
1288 1302 0.943359 CTCGCTCGCCATCTGATTCC 60.943 60.000 0.00 0.00 0.00 3.01
1308 1329 4.264253 CCACTTGCTGGTCTATCAATGAA 58.736 43.478 0.00 0.00 34.90 2.57
1343 1364 4.450419 GCTAATCGCTGAGCAATCACTATT 59.550 41.667 4.88 0.00 38.62 1.73
1370 1392 2.599677 AGCTATCAGCCTAGTACCCAC 58.400 52.381 0.00 0.00 43.77 4.61
1373 1395 2.289133 GCCAAGCTATCAGCCTAGTACC 60.289 54.545 0.00 0.00 43.77 3.34
1385 1407 3.322254 AGCATAGTACGAAGCCAAGCTAT 59.678 43.478 0.00 0.00 38.25 2.97
1470 1514 1.127567 ACTGCAGTAGGGCACTCCAA 61.128 55.000 20.16 0.00 39.25 3.53
1498 1542 2.840203 AATCCTCTTCCCCGGCCTGA 62.840 60.000 0.00 0.00 0.00 3.86
1504 1548 1.032114 GCCACAAATCCTCTTCCCCG 61.032 60.000 0.00 0.00 0.00 5.73
1505 1549 0.332972 AGCCACAAATCCTCTTCCCC 59.667 55.000 0.00 0.00 0.00 4.81
1506 1550 1.283321 AGAGCCACAAATCCTCTTCCC 59.717 52.381 0.00 0.00 32.27 3.97
1507 1551 2.637947 GAGAGCCACAAATCCTCTTCC 58.362 52.381 0.00 0.00 36.16 3.46
1508 1552 2.275318 CGAGAGCCACAAATCCTCTTC 58.725 52.381 0.00 0.00 36.16 2.87
1509 1553 1.065854 CCGAGAGCCACAAATCCTCTT 60.066 52.381 0.00 0.00 36.16 2.85
1510 1554 0.539051 CCGAGAGCCACAAATCCTCT 59.461 55.000 0.00 0.00 38.58 3.69
1511 1555 0.462759 CCCGAGAGCCACAAATCCTC 60.463 60.000 0.00 0.00 0.00 3.71
1512 1556 1.201429 ACCCGAGAGCCACAAATCCT 61.201 55.000 0.00 0.00 0.00 3.24
1513 1557 1.026718 CACCCGAGAGCCACAAATCC 61.027 60.000 0.00 0.00 0.00 3.01
1514 1558 1.648467 GCACCCGAGAGCCACAAATC 61.648 60.000 0.00 0.00 0.00 2.17
1515 1559 1.675641 GCACCCGAGAGCCACAAAT 60.676 57.895 0.00 0.00 0.00 2.32
1516 1560 2.281484 GCACCCGAGAGCCACAAA 60.281 61.111 0.00 0.00 0.00 2.83
1532 1576 1.021202 TTAATGCTATGGCGTGTGGC 58.979 50.000 0.00 0.00 42.25 5.01
1533 1577 3.773860 TTTTAATGCTATGGCGTGTGG 57.226 42.857 0.00 0.00 42.25 4.17
1578 1622 9.656040 CCATGTTTCATATCCAAAATTTCAGAA 57.344 29.630 0.00 0.00 0.00 3.02
1579 1623 8.259411 CCCATGTTTCATATCCAAAATTTCAGA 58.741 33.333 0.00 0.00 0.00 3.27
1580 1624 8.042515 ACCCATGTTTCATATCCAAAATTTCAG 58.957 33.333 0.00 0.00 0.00 3.02
1581 1625 7.915930 ACCCATGTTTCATATCCAAAATTTCA 58.084 30.769 0.00 0.00 0.00 2.69
1582 1626 9.313118 GTACCCATGTTTCATATCCAAAATTTC 57.687 33.333 0.00 0.00 0.00 2.17
1583 1627 8.264347 GGTACCCATGTTTCATATCCAAAATTT 58.736 33.333 0.00 0.00 0.00 1.82
1584 1628 7.791029 GGTACCCATGTTTCATATCCAAAATT 58.209 34.615 0.00 0.00 0.00 1.82
1585 1629 7.360113 GGTACCCATGTTTCATATCCAAAAT 57.640 36.000 0.00 0.00 0.00 1.82
1586 1630 6.783708 GGTACCCATGTTTCATATCCAAAA 57.216 37.500 0.00 0.00 0.00 2.44
1604 1648 5.645601 AACACGTGTCTACAACGGGTACC 62.646 52.174 23.61 2.17 43.09 3.34
1605 1649 1.001378 ACACGTGTCTACAACGGGTAC 60.001 52.381 17.22 0.00 42.02 3.34
1606 1650 1.317613 ACACGTGTCTACAACGGGTA 58.682 50.000 17.22 0.00 42.02 3.69
1607 1651 0.461135 AACACGTGTCTACAACGGGT 59.539 50.000 23.61 0.00 46.04 5.28
1608 1652 1.134226 GAACACGTGTCTACAACGGG 58.866 55.000 23.61 0.00 36.23 5.28
1609 1653 1.784856 CTGAACACGTGTCTACAACGG 59.215 52.381 23.61 10.34 0.00 4.44
1610 1654 2.456989 ACTGAACACGTGTCTACAACG 58.543 47.619 23.61 13.24 0.00 4.10
1611 1655 4.547587 CGAAACTGAACACGTGTCTACAAC 60.548 45.833 23.61 10.12 0.00 3.32
1612 1656 3.548668 CGAAACTGAACACGTGTCTACAA 59.451 43.478 23.61 5.17 0.00 2.41
1613 1657 3.110358 CGAAACTGAACACGTGTCTACA 58.890 45.455 23.61 19.77 0.00 2.74
1614 1658 3.365832 TCGAAACTGAACACGTGTCTAC 58.634 45.455 23.61 16.35 0.00 2.59
1615 1659 3.549423 CCTCGAAACTGAACACGTGTCTA 60.549 47.826 23.61 12.93 0.00 2.59
1616 1660 2.460918 CTCGAAACTGAACACGTGTCT 58.539 47.619 23.61 12.29 0.00 3.41
1617 1661 1.521423 CCTCGAAACTGAACACGTGTC 59.479 52.381 23.61 15.57 0.00 3.67
1618 1662 1.567504 CCTCGAAACTGAACACGTGT 58.432 50.000 17.22 17.22 0.00 4.49
1619 1663 0.859232 CCCTCGAAACTGAACACGTG 59.141 55.000 15.48 15.48 0.00 4.49
1620 1664 0.249741 CCCCTCGAAACTGAACACGT 60.250 55.000 0.00 0.00 0.00 4.49
1621 1665 0.032952 TCCCCTCGAAACTGAACACG 59.967 55.000 0.00 0.00 0.00 4.49
1622 1666 2.249844 TTCCCCTCGAAACTGAACAC 57.750 50.000 0.00 0.00 0.00 3.32
1623 1667 2.552155 CCATTCCCCTCGAAACTGAACA 60.552 50.000 0.00 0.00 33.08 3.18
1624 1668 2.084546 CCATTCCCCTCGAAACTGAAC 58.915 52.381 0.00 0.00 33.08 3.18
1625 1669 1.004277 CCCATTCCCCTCGAAACTGAA 59.996 52.381 0.00 0.00 33.08 3.02
1626 1670 0.618458 CCCATTCCCCTCGAAACTGA 59.382 55.000 0.00 0.00 33.08 3.41
1627 1671 0.328258 ACCCATTCCCCTCGAAACTG 59.672 55.000 0.00 0.00 33.08 3.16
1628 1672 0.328258 CACCCATTCCCCTCGAAACT 59.672 55.000 0.00 0.00 33.08 2.66
1629 1673 1.313091 GCACCCATTCCCCTCGAAAC 61.313 60.000 0.00 0.00 33.08 2.78
1630 1674 1.001393 GCACCCATTCCCCTCGAAA 60.001 57.895 0.00 0.00 33.08 3.46
1631 1675 2.674754 GCACCCATTCCCCTCGAA 59.325 61.111 0.00 0.00 34.14 3.71
1632 1676 3.407967 GGCACCCATTCCCCTCGA 61.408 66.667 0.00 0.00 0.00 4.04
1633 1677 4.856801 CGGCACCCATTCCCCTCG 62.857 72.222 0.00 0.00 0.00 4.63
1634 1678 4.506255 CCGGCACCCATTCCCCTC 62.506 72.222 0.00 0.00 0.00 4.30
1638 1682 2.487274 TTACCACCGGCACCCATTCC 62.487 60.000 0.00 0.00 0.00 3.01
1639 1683 0.395173 ATTACCACCGGCACCCATTC 60.395 55.000 0.00 0.00 0.00 2.67
1640 1684 0.682855 CATTACCACCGGCACCCATT 60.683 55.000 0.00 0.00 0.00 3.16
1641 1685 1.077068 CATTACCACCGGCACCCAT 60.077 57.895 0.00 0.00 0.00 4.00
1642 1686 2.353189 CATTACCACCGGCACCCA 59.647 61.111 0.00 0.00 0.00 4.51
1643 1687 1.747745 GACATTACCACCGGCACCC 60.748 63.158 0.00 0.00 0.00 4.61
1644 1688 1.003112 TGACATTACCACCGGCACC 60.003 57.895 0.00 0.00 0.00 5.01
1645 1689 0.321298 ACTGACATTACCACCGGCAC 60.321 55.000 0.00 0.00 0.00 5.01
1646 1690 1.268066 TACTGACATTACCACCGGCA 58.732 50.000 0.00 0.00 0.00 5.69
1647 1691 2.389962 TTACTGACATTACCACCGGC 57.610 50.000 0.00 0.00 0.00 6.13
1696 1740 7.307337 CGACTTACGTTACACCCAGTTATTTTT 60.307 37.037 0.00 0.00 37.22 1.94
1697 1741 6.146021 CGACTTACGTTACACCCAGTTATTTT 59.854 38.462 0.00 0.00 37.22 1.82
1698 1742 5.634859 CGACTTACGTTACACCCAGTTATTT 59.365 40.000 0.00 0.00 37.22 1.40
1699 1743 5.163513 CGACTTACGTTACACCCAGTTATT 58.836 41.667 0.00 0.00 37.22 1.40
1700 1744 4.380867 CCGACTTACGTTACACCCAGTTAT 60.381 45.833 0.00 0.00 40.78 1.89
1701 1745 3.057596 CCGACTTACGTTACACCCAGTTA 60.058 47.826 0.00 0.00 40.78 2.24
1702 1746 2.288395 CCGACTTACGTTACACCCAGTT 60.288 50.000 0.00 0.00 40.78 3.16
1703 1747 1.270550 CCGACTTACGTTACACCCAGT 59.729 52.381 0.00 0.00 40.78 4.00
1704 1748 1.541147 TCCGACTTACGTTACACCCAG 59.459 52.381 0.00 0.00 40.78 4.45
1705 1749 1.269448 GTCCGACTTACGTTACACCCA 59.731 52.381 0.00 0.00 40.78 4.51
1706 1750 1.402852 GGTCCGACTTACGTTACACCC 60.403 57.143 0.00 0.00 40.78 4.61
1707 1751 1.729149 CGGTCCGACTTACGTTACACC 60.729 57.143 4.91 0.00 40.78 4.16
1708 1752 1.069227 ACGGTCCGACTTACGTTACAC 60.069 52.381 20.51 0.00 40.78 2.90
1709 1753 1.234821 ACGGTCCGACTTACGTTACA 58.765 50.000 20.51 0.00 40.78 2.41
1710 1754 3.675467 ATACGGTCCGACTTACGTTAC 57.325 47.619 20.51 0.00 40.38 2.50
1711 1755 4.438200 GGAAATACGGTCCGACTTACGTTA 60.438 45.833 20.51 0.00 40.38 3.18
1712 1756 3.501950 GAAATACGGTCCGACTTACGTT 58.498 45.455 20.51 1.67 40.38 3.99
1713 1757 2.159379 GGAAATACGGTCCGACTTACGT 60.159 50.000 20.51 6.56 42.71 3.57
1714 1758 2.098117 AGGAAATACGGTCCGACTTACG 59.902 50.000 20.51 0.00 40.36 3.18
1715 1759 3.790152 AGGAAATACGGTCCGACTTAC 57.210 47.619 20.51 8.48 40.36 2.34
1716 1760 4.900635 GTAGGAAATACGGTCCGACTTA 57.099 45.455 20.51 0.00 40.36 2.24
1717 1761 3.790152 GTAGGAAATACGGTCCGACTT 57.210 47.619 20.51 7.78 40.36 3.01
1727 1771 3.988517 GGTATCTGCAGCGTAGGAAATAC 59.011 47.826 9.47 8.94 0.00 1.89
1728 1772 3.639561 TGGTATCTGCAGCGTAGGAAATA 59.360 43.478 9.47 0.00 0.00 1.40
1729 1773 2.434336 TGGTATCTGCAGCGTAGGAAAT 59.566 45.455 9.47 0.00 0.00 2.17
1730 1774 1.828595 TGGTATCTGCAGCGTAGGAAA 59.171 47.619 9.47 0.00 0.00 3.13
1731 1775 1.136305 GTGGTATCTGCAGCGTAGGAA 59.864 52.381 9.47 0.00 0.00 3.36
1732 1776 0.744874 GTGGTATCTGCAGCGTAGGA 59.255 55.000 9.47 0.00 0.00 2.94
1733 1777 0.595053 CGTGGTATCTGCAGCGTAGG 60.595 60.000 9.47 0.00 0.00 3.18
1734 1778 0.595053 CCGTGGTATCTGCAGCGTAG 60.595 60.000 9.47 0.00 0.00 3.51
1735 1779 1.435925 CCGTGGTATCTGCAGCGTA 59.564 57.895 9.47 1.35 0.00 4.42
1736 1780 2.184322 CCGTGGTATCTGCAGCGT 59.816 61.111 9.47 2.45 0.00 5.07
1737 1781 2.586079 CCCGTGGTATCTGCAGCG 60.586 66.667 9.47 5.45 0.00 5.18
1738 1782 2.897350 GCCCGTGGTATCTGCAGC 60.897 66.667 9.47 0.00 0.00 5.25
1739 1783 1.815421 GTGCCCGTGGTATCTGCAG 60.815 63.158 7.63 7.63 31.69 4.41
1740 1784 2.267642 GTGCCCGTGGTATCTGCA 59.732 61.111 0.00 0.00 0.00 4.41
1741 1785 2.513897 GGTGCCCGTGGTATCTGC 60.514 66.667 0.00 0.00 0.00 4.26
1742 1786 0.107214 ATTGGTGCCCGTGGTATCTG 60.107 55.000 0.00 0.00 0.00 2.90
1743 1787 0.623723 AATTGGTGCCCGTGGTATCT 59.376 50.000 0.00 0.00 0.00 1.98
1744 1788 1.021968 GAATTGGTGCCCGTGGTATC 58.978 55.000 0.00 0.00 0.00 2.24
1745 1789 0.395173 GGAATTGGTGCCCGTGGTAT 60.395 55.000 0.00 0.00 0.00 2.73
1746 1790 1.001887 GGAATTGGTGCCCGTGGTA 60.002 57.895 0.00 0.00 0.00 3.25
1747 1791 2.282887 GGAATTGGTGCCCGTGGT 60.283 61.111 0.00 0.00 0.00 4.16
1748 1792 3.068064 GGGAATTGGTGCCCGTGG 61.068 66.667 0.00 0.00 34.00 4.94
1753 1797 0.761802 TTTTGTGGGGAATTGGTGCC 59.238 50.000 0.00 0.00 36.87 5.01
1754 1798 2.629336 TTTTTGTGGGGAATTGGTGC 57.371 45.000 0.00 0.00 0.00 5.01
1755 1799 4.348863 TCATTTTTGTGGGGAATTGGTG 57.651 40.909 0.00 0.00 0.00 4.17
1756 1800 4.164988 TGTTCATTTTTGTGGGGAATTGGT 59.835 37.500 0.00 0.00 0.00 3.67
1757 1801 4.514816 GTGTTCATTTTTGTGGGGAATTGG 59.485 41.667 0.00 0.00 0.00 3.16
1758 1802 4.210955 CGTGTTCATTTTTGTGGGGAATTG 59.789 41.667 0.00 0.00 0.00 2.32
1759 1803 4.376146 CGTGTTCATTTTTGTGGGGAATT 58.624 39.130 0.00 0.00 0.00 2.17
1760 1804 3.244044 CCGTGTTCATTTTTGTGGGGAAT 60.244 43.478 0.00 0.00 0.00 3.01
1761 1805 2.101582 CCGTGTTCATTTTTGTGGGGAA 59.898 45.455 0.00 0.00 0.00 3.97
1762 1806 1.683917 CCGTGTTCATTTTTGTGGGGA 59.316 47.619 0.00 0.00 0.00 4.81
1763 1807 1.270041 CCCGTGTTCATTTTTGTGGGG 60.270 52.381 0.00 0.00 0.00 4.96
1764 1808 1.410882 ACCCGTGTTCATTTTTGTGGG 59.589 47.619 0.00 0.00 41.29 4.61
1765 1809 2.880963 ACCCGTGTTCATTTTTGTGG 57.119 45.000 0.00 0.00 0.00 4.17
1766 1810 6.003234 TGTATACCCGTGTTCATTTTTGTG 57.997 37.500 0.00 0.00 0.00 3.33
1767 1811 6.636562 TTGTATACCCGTGTTCATTTTTGT 57.363 33.333 0.00 0.00 0.00 2.83
1768 1812 6.529829 CCATTGTATACCCGTGTTCATTTTTG 59.470 38.462 0.00 0.00 0.00 2.44
1769 1813 6.350612 CCCATTGTATACCCGTGTTCATTTTT 60.351 38.462 0.00 0.00 0.00 1.94
1770 1814 5.126384 CCCATTGTATACCCGTGTTCATTTT 59.874 40.000 0.00 0.00 0.00 1.82
1771 1815 4.642885 CCCATTGTATACCCGTGTTCATTT 59.357 41.667 0.00 0.00 0.00 2.32
1772 1816 4.204012 CCCATTGTATACCCGTGTTCATT 58.796 43.478 0.00 0.00 0.00 2.57
1773 1817 3.815809 CCCATTGTATACCCGTGTTCAT 58.184 45.455 0.00 0.00 0.00 2.57
1774 1818 2.681390 GCCCATTGTATACCCGTGTTCA 60.681 50.000 0.00 0.00 0.00 3.18
1775 1819 1.944709 GCCCATTGTATACCCGTGTTC 59.055 52.381 0.00 0.00 0.00 3.18
1776 1820 1.282447 TGCCCATTGTATACCCGTGTT 59.718 47.619 0.00 0.00 0.00 3.32
1777 1821 0.913205 TGCCCATTGTATACCCGTGT 59.087 50.000 0.00 0.00 0.00 4.49
1778 1822 1.134220 AGTGCCCATTGTATACCCGTG 60.134 52.381 0.00 0.00 0.00 4.94
1779 1823 1.140252 GAGTGCCCATTGTATACCCGT 59.860 52.381 0.00 0.00 0.00 5.28
1780 1824 1.140052 TGAGTGCCCATTGTATACCCG 59.860 52.381 0.00 0.00 0.00 5.28
1781 1825 2.487265 CCTGAGTGCCCATTGTATACCC 60.487 54.545 0.00 0.00 0.00 3.69
1782 1826 2.172717 ACCTGAGTGCCCATTGTATACC 59.827 50.000 0.00 0.00 0.00 2.73
1783 1827 3.560636 ACCTGAGTGCCCATTGTATAC 57.439 47.619 0.00 0.00 0.00 1.47
1784 1828 4.523083 GAAACCTGAGTGCCCATTGTATA 58.477 43.478 0.00 0.00 0.00 1.47
1785 1829 3.356290 GAAACCTGAGTGCCCATTGTAT 58.644 45.455 0.00 0.00 0.00 2.29
1786 1830 2.790433 GAAACCTGAGTGCCCATTGTA 58.210 47.619 0.00 0.00 0.00 2.41
1787 1831 1.620822 GAAACCTGAGTGCCCATTGT 58.379 50.000 0.00 0.00 0.00 2.71
1788 1832 0.523072 CGAAACCTGAGTGCCCATTG 59.477 55.000 0.00 0.00 0.00 2.82
1789 1833 0.110486 ACGAAACCTGAGTGCCCATT 59.890 50.000 0.00 0.00 0.00 3.16
1790 1834 0.981183 TACGAAACCTGAGTGCCCAT 59.019 50.000 0.00 0.00 0.00 4.00
1791 1835 0.981183 ATACGAAACCTGAGTGCCCA 59.019 50.000 0.00 0.00 0.00 5.36
1792 1836 1.653151 GATACGAAACCTGAGTGCCC 58.347 55.000 0.00 0.00 0.00 5.36
1793 1837 1.653151 GGATACGAAACCTGAGTGCC 58.347 55.000 0.00 0.00 0.00 5.01
1794 1838 1.066430 TGGGATACGAAACCTGAGTGC 60.066 52.381 0.00 0.00 37.60 4.40
1795 1839 3.328382 TTGGGATACGAAACCTGAGTG 57.672 47.619 0.00 0.00 37.60 3.51
1796 1840 4.360951 TTTTGGGATACGAAACCTGAGT 57.639 40.909 0.00 0.00 44.41 3.41
1797 1841 5.897377 AATTTTGGGATACGAAACCTGAG 57.103 39.130 0.00 0.00 44.41 3.35
1798 1842 5.770663 TGAAATTTTGGGATACGAAACCTGA 59.229 36.000 0.00 0.00 44.41 3.86
1799 1843 5.861787 GTGAAATTTTGGGATACGAAACCTG 59.138 40.000 0.00 0.00 44.41 4.00
1800 1844 5.536916 TGTGAAATTTTGGGATACGAAACCT 59.463 36.000 0.00 0.00 44.41 3.50
1801 1845 5.774630 TGTGAAATTTTGGGATACGAAACC 58.225 37.500 0.00 0.00 44.41 3.27
1802 1846 7.883229 AATGTGAAATTTTGGGATACGAAAC 57.117 32.000 0.00 0.00 44.41 2.78
1803 1847 8.894768 AAAATGTGAAATTTTGGGATACGAAA 57.105 26.923 0.00 0.00 42.95 3.46
1804 1848 8.894768 AAAAATGTGAAATTTTGGGATACGAA 57.105 26.923 0.00 0.00 32.23 3.85
1849 1893 9.890915 ACCCCTATATAAAAATAGCATCCAAAA 57.109 29.630 0.00 0.00 0.00 2.44
1850 1894 9.308000 CACCCCTATATAAAAATAGCATCCAAA 57.692 33.333 0.00 0.00 0.00 3.28
1851 1895 8.452868 ACACCCCTATATAAAAATAGCATCCAA 58.547 33.333 0.00 0.00 0.00 3.53
1852 1896 7.888021 CACACCCCTATATAAAAATAGCATCCA 59.112 37.037 0.00 0.00 0.00 3.41
1853 1897 7.888546 ACACACCCCTATATAAAAATAGCATCC 59.111 37.037 0.00 0.00 0.00 3.51
1854 1898 8.730680 CACACACCCCTATATAAAAATAGCATC 58.269 37.037 0.00 0.00 0.00 3.91
1855 1899 7.669722 CCACACACCCCTATATAAAAATAGCAT 59.330 37.037 0.00 0.00 0.00 3.79
1856 1900 7.001674 CCACACACCCCTATATAAAAATAGCA 58.998 38.462 0.00 0.00 0.00 3.49
1857 1901 6.072119 GCCACACACCCCTATATAAAAATAGC 60.072 42.308 0.00 0.00 0.00 2.97
1858 1902 7.001674 TGCCACACACCCCTATATAAAAATAG 58.998 38.462 0.00 0.00 0.00 1.73
1859 1903 6.773685 GTGCCACACACCCCTATATAAAAATA 59.226 38.462 0.00 0.00 44.02 1.40
1860 1904 5.596772 GTGCCACACACCCCTATATAAAAAT 59.403 40.000 0.00 0.00 44.02 1.82
1861 1905 4.951094 GTGCCACACACCCCTATATAAAAA 59.049 41.667 0.00 0.00 44.02 1.94
1862 1906 4.528920 GTGCCACACACCCCTATATAAAA 58.471 43.478 0.00 0.00 44.02 1.52
1863 1907 4.159244 GTGCCACACACCCCTATATAAA 57.841 45.455 0.00 0.00 44.02 1.40
1864 1908 3.849563 GTGCCACACACCCCTATATAA 57.150 47.619 0.00 0.00 44.02 0.98
1891 1935 3.518590 CTGAAAGGAAATGCATTGGAGC 58.481 45.455 13.82 3.13 0.00 4.70
1906 1950 2.029838 AATAGCAGCCGTCCTGAAAG 57.970 50.000 4.68 0.00 44.64 2.62
1907 1951 2.489938 AAATAGCAGCCGTCCTGAAA 57.510 45.000 4.68 0.00 44.64 2.69
1908 1952 2.489938 AAAATAGCAGCCGTCCTGAA 57.510 45.000 4.68 0.00 44.64 3.02
1909 1953 2.489938 AAAAATAGCAGCCGTCCTGA 57.510 45.000 4.68 0.00 44.64 3.86
1950 2002 5.915812 AAAACACAACAAAAGAGCGTTTT 57.084 30.435 0.00 0.00 32.02 2.43
1954 2006 4.384247 TGTCAAAAACACAACAAAAGAGCG 59.616 37.500 0.00 0.00 31.20 5.03
1955 2007 5.837586 TGTCAAAAACACAACAAAAGAGC 57.162 34.783 0.00 0.00 31.20 4.09
1956 2008 8.494347 TGAAATGTCAAAAACACAACAAAAGAG 58.506 29.630 0.00 0.00 41.75 2.85
1957 2009 8.279103 GTGAAATGTCAAAAACACAACAAAAGA 58.721 29.630 0.00 0.00 41.75 2.52
1959 2011 7.919690 TGTGAAATGTCAAAAACACAACAAAA 58.080 26.923 0.00 0.00 41.75 2.44
1960 2012 7.482654 TGTGAAATGTCAAAAACACAACAAA 57.517 28.000 0.00 0.00 41.75 2.83
1965 2053 4.863689 CAGCTGTGAAATGTCAAAAACACA 59.136 37.500 5.25 0.00 41.75 3.72
2041 2129 5.354054 TCTAGCAGAACGACGGATATTAC 57.646 43.478 0.00 0.00 0.00 1.89
2052 2140 4.389992 ACATTGTCACATTCTAGCAGAACG 59.610 41.667 1.44 0.00 37.00 3.95
2059 2147 3.346315 TGCCCACATTGTCACATTCTAG 58.654 45.455 0.00 0.00 0.00 2.43
2061 2149 2.291209 TGCCCACATTGTCACATTCT 57.709 45.000 0.00 0.00 0.00 2.40
2109 2197 8.960591 CACCATTCCAACTAAACTAATGAAGAT 58.039 33.333 0.00 0.00 30.77 2.40
2187 2331 6.003950 GGGATGTAGCATGTACACCATTAAT 58.996 40.000 0.00 0.00 0.00 1.40
2209 2361 2.737679 GCAACGCCTAGTTAGTAGTGGG 60.738 54.545 0.00 0.00 42.02 4.61
2264 2416 8.966868 ACACCAGACAATTAGAAGAAAGAAAAA 58.033 29.630 0.00 0.00 0.00 1.94
2269 2421 8.713271 GTTAGACACCAGACAATTAGAAGAAAG 58.287 37.037 0.00 0.00 0.00 2.62
2306 2458 7.255569 AGAGCACATTGTACATGAATCATTTG 58.744 34.615 0.00 0.00 0.00 2.32
2325 2477 6.655425 ACCATAAGAAAGTTTCCTAAGAGCAC 59.345 38.462 12.05 0.00 0.00 4.40
2326 2478 6.779860 ACCATAAGAAAGTTTCCTAAGAGCA 58.220 36.000 12.05 0.00 0.00 4.26
2358 2511 2.545742 GCCCATGTCTGTTTCCACAAAC 60.546 50.000 0.00 0.00 42.16 2.93
2359 2512 1.686052 GCCCATGTCTGTTTCCACAAA 59.314 47.619 0.00 0.00 30.36 2.83
2560 2713 2.286654 GCAGAAATAGCATCCTTCGTGC 60.287 50.000 0.00 0.00 42.81 5.34
2752 2905 7.201582 CGGAGTATAGGTGGATAAAACAACAAC 60.202 40.741 0.00 0.00 0.00 3.32
2796 2949 1.573829 GCGCCGTTTTCCATCTCACA 61.574 55.000 0.00 0.00 0.00 3.58
2867 3020 2.762327 GTCATGCAATCCACCATCCTTT 59.238 45.455 0.00 0.00 0.00 3.11
2982 3135 3.068165 TCATCATTACTAGGACGCTGTGG 59.932 47.826 0.00 0.00 0.00 4.17
3052 3205 8.831715 AAATTCATTTGAAGTCCATAACCAAC 57.168 30.769 0.00 0.00 37.48 3.77
3196 3349 4.313020 AATGTGAGGAAGGCAGAGAAAT 57.687 40.909 0.00 0.00 0.00 2.17
3200 3353 3.822735 TGAAAAATGTGAGGAAGGCAGAG 59.177 43.478 0.00 0.00 0.00 3.35
3202 3355 3.318839 TGTGAAAAATGTGAGGAAGGCAG 59.681 43.478 0.00 0.00 0.00 4.85
3204 3357 4.240096 CATGTGAAAAATGTGAGGAAGGC 58.760 43.478 0.00 0.00 0.00 4.35
3205 3358 4.523943 TCCATGTGAAAAATGTGAGGAAGG 59.476 41.667 0.00 0.00 25.83 3.46
3291 3444 9.614792 GATTCAAGAACAGTACCATACCTAATT 57.385 33.333 0.00 0.00 0.00 1.40
3413 3574 4.387026 TGGCCATCTTATAATTCCAGGG 57.613 45.455 0.00 0.00 0.00 4.45
3415 3576 7.528996 TCAAATGGCCATCTTATAATTCCAG 57.471 36.000 21.08 0.00 0.00 3.86
3453 3614 6.031003 CCGAAAACGTTATCGATGAAACAAAG 59.969 38.462 8.54 0.00 41.43 2.77
3471 3632 6.047231 ACAGGAAGCTATGTATACCGAAAAC 58.953 40.000 0.00 0.00 0.00 2.43
3534 3696 5.443824 CGCACGATATTACTGCTCATCATTC 60.444 44.000 0.00 0.00 0.00 2.67
3543 3705 2.662700 ACTAGCGCACGATATTACTGC 58.337 47.619 11.47 0.00 0.00 4.40
3549 3711 2.100916 AGGTTGAACTAGCGCACGATAT 59.899 45.455 11.47 0.00 0.00 1.63
3554 3716 3.249080 TGTAAAAGGTTGAACTAGCGCAC 59.751 43.478 11.47 0.00 0.00 5.34
3730 3910 4.947388 TGAGCCCCAAGTTGTATTGTATTC 59.053 41.667 1.45 0.00 0.00 1.75
3847 4027 5.768317 TCCCTCGCAGTTTTATTTCAAAAG 58.232 37.500 0.00 0.00 0.00 2.27
3871 4051 2.677037 GCCTGTTCATACTGTAGGCGTT 60.677 50.000 1.59 0.00 43.76 4.84
3895 4080 4.000988 GTGACCATAGGACGTGAATTTGT 58.999 43.478 0.00 0.00 0.00 2.83
3919 4105 5.182487 TCAGAACACTGCTTAAACACAGAA 58.818 37.500 6.77 0.00 37.35 3.02
3960 4146 4.437239 CAGCGGACTTCAATCTGTAGAAT 58.563 43.478 0.00 0.00 0.00 2.40
4071 4257 5.874810 TGATGAACCAGTAGAAAATTCCTCG 59.125 40.000 0.00 0.00 0.00 4.63
4258 4445 3.099905 AGCAGTTACTCCACATCTAGCA 58.900 45.455 0.00 0.00 0.00 3.49
4330 4517 3.119291 GCATGAACATACCAGACTCTCG 58.881 50.000 0.00 0.00 0.00 4.04
4369 4556 8.547967 TTTACAAGACTGAATCCAATCTGTAC 57.452 34.615 0.00 0.00 28.18 2.90
4371 4558 7.884877 TCATTTACAAGACTGAATCCAATCTGT 59.115 33.333 0.00 0.00 28.18 3.41
4415 4603 1.270550 GACCAAGTTTGTCCTGCCATG 59.729 52.381 0.00 0.00 0.00 3.66
4431 4619 0.603707 CGCTTCTGCAGAAAGGACCA 60.604 55.000 28.16 6.23 39.64 4.02
4536 4724 5.510671 AGTTTTGTGATGTCGACATGAAAC 58.489 37.500 34.48 30.07 36.57 2.78
4560 4748 4.682787 CGCTGTCAAGATATCCAACAGTA 58.317 43.478 21.46 0.00 39.56 2.74
4690 4878 3.081804 GGACCTTGACAACCTGGTATTG 58.918 50.000 0.00 0.00 32.30 1.90
4716 4904 0.895100 CAAGCTTAGCACCCTTGGCA 60.895 55.000 7.07 0.00 33.96 4.92
4757 4945 3.364889 TGAACTGAACTGATTCGACGT 57.635 42.857 0.00 0.00 37.69 4.34
4775 4963 4.803613 CGTCCATCGTGATGTTTAGAATGA 59.196 41.667 8.89 0.00 37.11 2.57
4854 5042 1.294659 GCCACTGGTCTTGAGCTTCG 61.295 60.000 0.00 0.00 0.00 3.79
4980 5168 5.237344 CGCAACTCCATAATTAAGCTAAGCT 59.763 40.000 0.00 0.00 42.56 3.74
4981 5169 5.236478 TCGCAACTCCATAATTAAGCTAAGC 59.764 40.000 0.00 0.00 0.00 3.09
4982 5170 6.562270 CGTCGCAACTCCATAATTAAGCTAAG 60.562 42.308 0.00 0.00 0.00 2.18
4985 5173 3.555956 CGTCGCAACTCCATAATTAAGCT 59.444 43.478 0.00 0.00 0.00 3.74
4986 5174 3.554324 TCGTCGCAACTCCATAATTAAGC 59.446 43.478 0.00 0.00 0.00 3.09
4987 5175 5.062934 TGTTCGTCGCAACTCCATAATTAAG 59.937 40.000 8.37 0.00 0.00 1.85
4988 5176 4.930405 TGTTCGTCGCAACTCCATAATTAA 59.070 37.500 8.37 0.00 0.00 1.40
4995 5183 1.300620 CCTGTTCGTCGCAACTCCA 60.301 57.895 8.37 0.00 0.00 3.86
5003 5191 0.730834 CTCTCTGTGCCTGTTCGTCG 60.731 60.000 0.00 0.00 0.00 5.12
5086 5274 4.180946 CGAGCTCCCAGTCGGTCG 62.181 72.222 8.47 0.00 43.30 4.79
5367 5555 2.286872 AGAGCCTGCGATCAAATTCAG 58.713 47.619 0.00 0.00 0.00 3.02
5392 5580 2.125310 CTGGTACGCCATCGCCAA 60.125 61.111 0.00 0.00 45.05 4.52
5454 5642 7.254455 CCGGCTAATCACTTGTGTATTTTCTAG 60.254 40.741 0.00 0.00 0.00 2.43
5471 5662 2.227388 CCATTTCATCAGCCGGCTAATC 59.773 50.000 32.30 0.00 0.00 1.75
5536 5727 2.223377 CCTGCCGCCGTAGAAATATTTC 59.777 50.000 18.70 18.70 37.45 2.17
5538 5729 1.542547 CCCTGCCGCCGTAGAAATATT 60.543 52.381 0.00 0.00 0.00 1.28
5590 5784 0.526524 GTCACTCCAGCGAGAATCCG 60.527 60.000 0.00 0.00 38.52 4.18
5595 5789 2.954611 CGTGTCACTCCAGCGAGA 59.045 61.111 0.65 0.00 38.52 4.04
5606 5800 0.310543 GCAGAATTTGTGGCGTGTCA 59.689 50.000 0.00 0.00 0.00 3.58
5720 5917 5.422145 AGAGTTTGCTTGCACTTTTCAATT 58.578 33.333 0.00 0.00 0.00 2.32
5721 5918 5.014808 AGAGTTTGCTTGCACTTTTCAAT 57.985 34.783 0.00 0.00 0.00 2.57
5729 5926 0.937304 TCACGAGAGTTTGCTTGCAC 59.063 50.000 0.00 0.00 46.40 4.57
5911 6109 2.552743 CCAGCTGATTACCTACGATCGA 59.447 50.000 24.34 4.52 0.00 3.59
5919 6117 0.621571 TCAGGCCCAGCTGATTACCT 60.622 55.000 17.39 12.85 0.00 3.08
5975 6174 6.486657 CCCACCATCTAAAAATCATACATCGT 59.513 38.462 0.00 0.00 0.00 3.73
6059 6258 7.931015 TTCCTTAGATTAGGCCTTAGATCAA 57.069 36.000 12.58 0.00 35.15 2.57
6205 6413 4.260784 GCCGTACAGAATCCATGTGAAATC 60.261 45.833 0.00 0.00 32.02 2.17
6286 6500 9.445786 TTCGAGTAGAAAATTTTGAATGTTGTC 57.554 29.630 8.47 0.00 35.61 3.18
6368 6582 7.448748 AGAACTCATAAATTTAACGCAAGGT 57.551 32.000 1.21 0.00 46.39 3.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.