Multiple sequence alignment - TraesCS3D01G341100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G341100 chr3D 100.000 4120 0 0 1 4120 454507463 454511582 0.000000e+00 7609.0
1 TraesCS3D01G341100 chr3D 96.694 242 6 2 3881 4120 430196350 430196109 6.420000e-108 401.0
2 TraesCS3D01G341100 chr3D 84.746 59 7 2 2680 2737 337974306 337974249 1.600000e-04 58.4
3 TraesCS3D01G341100 chr3A 91.010 3882 164 60 1 3843 596512916 596516651 0.000000e+00 5064.0
4 TraesCS3D01G341100 chr3A 97.807 228 5 0 3893 4120 448654235 448654008 1.070000e-105 394.0
5 TraesCS3D01G341100 chr3A 93.511 262 15 1 3180 3439 596546559 596546820 4.990000e-104 388.0
6 TraesCS3D01G341100 chr3A 86.885 183 15 3 3513 3695 596546910 596547083 3.250000e-46 196.0
7 TraesCS3D01G341100 chr3B 92.943 3486 173 32 1 3439 597086954 597090413 0.000000e+00 5007.0
8 TraesCS3D01G341100 chr3B 79.714 419 44 15 3435 3845 597090495 597090880 8.780000e-67 265.0
9 TraesCS3D01G341100 chr3B 85.484 62 9 0 2569 2630 379172678 379172739 9.560000e-07 65.8
10 TraesCS3D01G341100 chr5D 99.127 229 2 0 3892 4120 242190922 242191150 2.960000e-111 412.0
11 TraesCS3D01G341100 chr5D 75.904 166 38 2 1984 2148 472237771 472237935 2.640000e-12 84.2
12 TraesCS3D01G341100 chr2D 98.283 233 4 0 3888 4120 32205648 32205880 3.830000e-110 409.0
13 TraesCS3D01G341100 chr2D 97.872 235 4 1 3886 4120 301117862 301117629 4.960000e-109 405.0
14 TraesCS3D01G341100 chr2D 95.238 252 8 2 3869 4120 649896385 649896632 2.980000e-106 396.0
15 TraesCS3D01G341100 chr2D 89.062 128 10 4 2635 2760 425216111 425215986 5.510000e-34 156.0
16 TraesCS3D01G341100 chr2D 97.917 48 1 0 2561 2608 5669239 5669286 2.640000e-12 84.2
17 TraesCS3D01G341100 chr2A 97.872 235 5 0 3886 4120 520595642 520595876 1.380000e-109 407.0
18 TraesCS3D01G341100 chr2A 97.468 237 5 1 3882 4118 640183266 640183031 1.780000e-108 403.0
19 TraesCS3D01G341100 chr2A 89.844 128 9 4 2635 2760 562984729 562984854 1.190000e-35 161.0
20 TraesCS3D01G341100 chr2A 97.917 48 1 0 2561 2608 4161467 4161514 2.640000e-12 84.2
21 TraesCS3D01G341100 chr7A 96.694 242 7 1 3879 4120 486828579 486828819 6.420000e-108 401.0
22 TraesCS3D01G341100 chr1A 82.997 347 50 7 1970 2313 493502007 493501667 5.170000e-79 305.0
23 TraesCS3D01G341100 chr1A 93.548 124 8 0 2508 2631 493501565 493501442 7.030000e-43 185.0
24 TraesCS3D01G341100 chr1A 86.861 137 18 0 2635 2771 493501337 493501201 1.980000e-33 154.0
25 TraesCS3D01G341100 chr1D 82.997 347 48 8 1970 2312 391862166 391862505 1.860000e-78 303.0
26 TraesCS3D01G341100 chr1D 95.161 124 6 0 2508 2631 391862608 391862731 3.250000e-46 196.0
27 TraesCS3D01G341100 chr1D 88.321 137 16 0 2635 2771 391862837 391862973 9.160000e-37 165.0
28 TraesCS3D01G341100 chr1B 82.948 346 50 7 1970 2312 530779787 530779448 1.860000e-78 303.0
29 TraesCS3D01G341100 chr1B 92.742 124 9 0 2508 2631 530779345 530779222 3.270000e-41 180.0
30 TraesCS3D01G341100 chr1B 87.591 137 17 0 2635 2771 530779117 530778981 4.260000e-35 159.0
31 TraesCS3D01G341100 chr2B 89.844 128 9 4 2635 2760 500590527 500590402 1.190000e-35 161.0
32 TraesCS3D01G341100 chr2B 97.917 48 1 0 2561 2608 5689055 5689008 2.640000e-12 84.2
33 TraesCS3D01G341100 chr5B 76.506 166 37 2 1984 2148 578540649 578540813 5.670000e-14 89.8
34 TraesCS3D01G341100 chr5A 76.220 164 37 2 1986 2148 591443768 591443930 7.340000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G341100 chr3D 454507463 454511582 4119 False 7609.000000 7609 100.000000 1 4120 1 chr3D.!!$F1 4119
1 TraesCS3D01G341100 chr3A 596512916 596516651 3735 False 5064.000000 5064 91.010000 1 3843 1 chr3A.!!$F1 3842
2 TraesCS3D01G341100 chr3A 596546559 596547083 524 False 292.000000 388 90.198000 3180 3695 2 chr3A.!!$F2 515
3 TraesCS3D01G341100 chr3B 597086954 597090880 3926 False 2636.000000 5007 86.328500 1 3845 2 chr3B.!!$F2 3844
4 TraesCS3D01G341100 chr1A 493501201 493502007 806 True 214.666667 305 87.802000 1970 2771 3 chr1A.!!$R1 801
5 TraesCS3D01G341100 chr1D 391862166 391862973 807 False 221.333333 303 88.826333 1970 2771 3 chr1D.!!$F1 801
6 TraesCS3D01G341100 chr1B 530778981 530779787 806 True 214.000000 303 87.760333 1970 2771 3 chr1B.!!$R1 801


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
407 410 0.320421 CAGCCAAGCAAAGCAAGCAT 60.320 50.000 0.00 0.00 0.00 3.79 F
408 411 1.067425 CAGCCAAGCAAAGCAAGCATA 60.067 47.619 0.00 0.00 0.00 3.14 F
409 412 1.203994 AGCCAAGCAAAGCAAGCATAG 59.796 47.619 0.00 0.00 0.00 2.23 F
2243 2281 1.146358 CGTCCGAGAATTCCTTCGGC 61.146 60.000 24.23 19.02 44.53 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1718 1756 0.307760 GGGTTGCCGCTAATCAATCG 59.692 55.000 0.0 0.00 0.00 3.34 R
1946 1984 1.515088 CGAGTGCGTCTGCCTGTAG 60.515 63.158 0.0 0.00 41.78 2.74 R
2255 2293 2.202453 GACGAGTTCTCGGGCGTC 60.202 66.667 22.9 10.58 44.83 5.19 R
3918 4193 0.034337 GAGGCCCAACAACGTCTACA 59.966 55.000 0.0 0.00 0.00 2.74 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 55 5.520649 CGATTAACTAGAAAAGAGGTCAGCC 59.479 44.000 0.00 0.00 0.00 4.85
78 80 8.084073 CCAGTAGAATTATTTAACCCATGCATG 58.916 37.037 20.19 20.19 0.00 4.06
80 82 8.850156 AGTAGAATTATTTAACCCATGCATGTC 58.150 33.333 24.58 11.05 0.00 3.06
124 126 1.770294 TGGGTCCTGGTTGAAACAAC 58.230 50.000 6.13 6.13 0.00 3.32
235 238 9.462606 AAATTCTACCGAATGGACTATTTTCTT 57.537 29.630 0.00 0.00 39.72 2.52
400 403 1.223187 CAAAAGGCAGCCAAGCAAAG 58.777 50.000 15.80 0.00 35.83 2.77
401 404 0.533531 AAAAGGCAGCCAAGCAAAGC 60.534 50.000 15.80 0.00 35.83 3.51
402 405 1.688269 AAAGGCAGCCAAGCAAAGCA 61.688 50.000 15.80 0.00 35.83 3.91
403 406 1.688269 AAGGCAGCCAAGCAAAGCAA 61.688 50.000 15.80 0.00 35.83 3.91
405 408 2.315386 GCAGCCAAGCAAAGCAAGC 61.315 57.895 0.00 0.00 0.00 4.01
406 409 1.068417 CAGCCAAGCAAAGCAAGCA 59.932 52.632 0.00 0.00 0.00 3.91
407 410 0.320421 CAGCCAAGCAAAGCAAGCAT 60.320 50.000 0.00 0.00 0.00 3.79
408 411 1.067425 CAGCCAAGCAAAGCAAGCATA 60.067 47.619 0.00 0.00 0.00 3.14
409 412 1.203994 AGCCAAGCAAAGCAAGCATAG 59.796 47.619 0.00 0.00 0.00 2.23
410 413 1.636988 CCAAGCAAAGCAAGCATAGC 58.363 50.000 0.00 0.00 0.00 2.97
424 433 3.623703 AGCATAGCATGGACATGACAAA 58.376 40.909 15.99 0.00 41.20 2.83
430 439 2.816087 GCATGGACATGACAAACTCAGT 59.184 45.455 15.99 0.00 41.20 3.41
431 440 3.365666 GCATGGACATGACAAACTCAGTG 60.366 47.826 15.99 0.00 41.20 3.66
550 559 4.016444 TGCTGATTTAATCCCCTCAACAC 58.984 43.478 2.22 0.00 0.00 3.32
630 640 2.261671 CGACCACCAACTCCTCCG 59.738 66.667 0.00 0.00 0.00 4.63
644 654 2.525629 TCCGCTCACCCAGAACCA 60.526 61.111 0.00 0.00 0.00 3.67
815 825 1.602377 CCAGTCCACGGTCAAAGTTTC 59.398 52.381 0.00 0.00 0.00 2.78
1254 1270 2.267324 GTGCTCCTCACCTCCAGC 59.733 66.667 0.00 0.00 39.79 4.85
1281 1302 4.612536 CGCGCCATGGAATTCCGC 62.613 66.667 18.40 19.30 39.14 5.54
1300 1321 3.272334 GGCGCCATGTCATCCGAC 61.272 66.667 24.80 0.38 42.93 4.79
1669 1707 2.804931 TCGCGCTGTCGTGTCATG 60.805 61.111 5.56 0.00 45.60 3.07
1718 1756 3.321111 TGAGAAATAGTCCCCGTGATAGC 59.679 47.826 0.00 0.00 0.00 2.97
1732 1770 2.092838 GTGATAGCGATTGATTAGCGGC 59.907 50.000 0.00 0.00 35.78 6.53
1817 1855 3.121030 GCGTACACAGGCCAGCAG 61.121 66.667 5.01 0.00 0.00 4.24
1818 1856 3.121030 CGTACACAGGCCAGCAGC 61.121 66.667 5.01 0.00 42.60 5.25
2243 2281 1.146358 CGTCCGAGAATTCCTTCGGC 61.146 60.000 24.23 19.02 44.53 5.54
2245 2283 2.526120 CCGAGAATTCCTTCGGCGC 61.526 63.158 19.52 0.00 38.95 6.53
2366 2422 0.807667 CGGATTCCAAGAGGTGAGCG 60.808 60.000 3.09 0.00 35.89 5.03
2371 2427 2.048222 CAAGAGGTGAGCGCCGAA 60.048 61.111 2.29 0.00 0.00 4.30
2374 2430 1.021390 AAGAGGTGAGCGCCGAATTG 61.021 55.000 2.29 0.00 0.00 2.32
2380 2436 1.463444 GTGAGCGCCGAATTGTACTTT 59.537 47.619 2.29 0.00 0.00 2.66
2381 2437 2.669434 GTGAGCGCCGAATTGTACTTTA 59.331 45.455 2.29 0.00 0.00 1.85
2383 2439 3.747010 TGAGCGCCGAATTGTACTTTAAA 59.253 39.130 2.29 0.00 0.00 1.52
2385 2441 5.581479 TGAGCGCCGAATTGTACTTTAAATA 59.419 36.000 2.29 0.00 0.00 1.40
2386 2442 6.259167 TGAGCGCCGAATTGTACTTTAAATAT 59.741 34.615 2.29 0.00 0.00 1.28
2387 2443 7.438757 TGAGCGCCGAATTGTACTTTAAATATA 59.561 33.333 2.29 0.00 0.00 0.86
2388 2444 8.319143 AGCGCCGAATTGTACTTTAAATATAT 57.681 30.769 2.29 0.00 0.00 0.86
2435 2496 2.205022 TGCATTCTTGGAGGAACAGG 57.795 50.000 0.00 0.00 0.00 4.00
2473 2534 1.892474 CGGCCAAATTTTCAGGAGGAA 59.108 47.619 2.24 0.00 0.00 3.36
2498 2559 2.202892 GGTGACGGCGAGGGAATC 60.203 66.667 16.62 0.00 0.00 2.52
2654 2820 1.002087 AGCTACTACAAGTGCACCACC 59.998 52.381 14.63 0.00 34.49 4.61
2865 3031 2.511403 TGGCGTACCAAACCAGCA 59.489 55.556 0.00 0.00 45.37 4.41
2867 3033 2.554272 GCGTACCAAACCAGCACG 59.446 61.111 0.00 0.00 35.78 5.34
2869 3035 2.322081 CGTACCAAACCAGCACGGG 61.322 63.158 0.00 0.00 40.22 5.28
2870 3036 1.071814 GTACCAAACCAGCACGGGA 59.928 57.895 0.00 0.00 40.22 5.14
2871 3037 0.953960 GTACCAAACCAGCACGGGAG 60.954 60.000 0.00 0.00 40.22 4.30
2872 3038 2.119484 TACCAAACCAGCACGGGAGG 62.119 60.000 0.00 0.00 40.22 4.30
2874 3040 4.660938 AAACCAGCACGGGAGGCC 62.661 66.667 0.00 0.00 40.22 5.19
3123 3289 2.232452 CAGAACTCCCAGTACTGACCAG 59.768 54.545 24.68 17.12 0.00 4.00
3145 3311 2.350772 CGAGTGTCAGAAATGGCAAACC 60.351 50.000 0.00 0.00 0.00 3.27
3231 3397 2.865079 TCGTTTATTTGTTGGGAGGCA 58.135 42.857 0.00 0.00 0.00 4.75
3359 3530 1.202627 TGCTTTGCCATTGTTTCCACC 60.203 47.619 0.00 0.00 0.00 4.61
3426 3597 9.768662 AGCAGAAATTTGTCATTATTCAAGTTT 57.231 25.926 0.00 0.00 36.63 2.66
3471 3738 5.581085 AGTGGTATGTTTTATTCTCAGCGAC 59.419 40.000 0.00 0.00 0.00 5.19
3496 3763 3.695060 CGTACCAGACCTCAGATGTACTT 59.305 47.826 0.00 0.00 0.00 2.24
3498 3765 5.531659 CGTACCAGACCTCAGATGTACTTAT 59.468 44.000 0.00 0.00 0.00 1.73
3504 3771 8.258007 CCAGACCTCAGATGTACTTATTGTAAA 58.742 37.037 0.00 0.00 32.25 2.01
3505 3772 9.823647 CAGACCTCAGATGTACTTATTGTAAAT 57.176 33.333 0.00 0.00 32.00 1.40
3531 3798 8.755696 TTGTAATCCAATCATTTTGTAGTTGC 57.244 30.769 0.00 0.00 0.00 4.17
3536 3803 4.925054 CCAATCATTTTGTAGTTGCACAGG 59.075 41.667 0.00 0.00 0.00 4.00
3540 3807 5.009631 TCATTTTGTAGTTGCACAGGCTAT 58.990 37.500 0.00 0.00 41.91 2.97
3691 3958 3.320541 TCCGAACTAACCAACCGTTTAGA 59.679 43.478 0.00 0.00 35.79 2.10
3699 3966 3.822940 ACCAACCGTTTAGAAATCACCA 58.177 40.909 0.00 0.00 0.00 4.17
3705 3972 3.128589 CCGTTTAGAAATCACCACCCATG 59.871 47.826 0.00 0.00 0.00 3.66
3706 3973 3.427503 CGTTTAGAAATCACCACCCATGC 60.428 47.826 0.00 0.00 0.00 4.06
3707 3974 3.448093 TTAGAAATCACCACCCATGCA 57.552 42.857 0.00 0.00 0.00 3.96
3708 3975 1.549203 AGAAATCACCACCCATGCAC 58.451 50.000 0.00 0.00 0.00 4.57
3709 3976 1.076024 AGAAATCACCACCCATGCACT 59.924 47.619 0.00 0.00 0.00 4.40
3710 3977 1.474077 GAAATCACCACCCATGCACTC 59.526 52.381 0.00 0.00 0.00 3.51
3711 3978 0.323725 AATCACCACCCATGCACTCC 60.324 55.000 0.00 0.00 0.00 3.85
3712 3979 2.215451 ATCACCACCCATGCACTCCC 62.215 60.000 0.00 0.00 0.00 4.30
3713 3980 2.858476 ACCACCCATGCACTCCCA 60.858 61.111 0.00 0.00 0.00 4.37
3714 3981 2.361610 CCACCCATGCACTCCCAC 60.362 66.667 0.00 0.00 0.00 4.61
3715 3982 2.361610 CACCCATGCACTCCCACC 60.362 66.667 0.00 0.00 0.00 4.61
3716 3983 3.661648 ACCCATGCACTCCCACCC 61.662 66.667 0.00 0.00 0.00 4.61
3717 3984 4.447342 CCCATGCACTCCCACCCC 62.447 72.222 0.00 0.00 0.00 4.95
3718 3985 4.447342 CCATGCACTCCCACCCCC 62.447 72.222 0.00 0.00 0.00 5.40
3806 4073 2.290896 CCAGCTCCTTAATGTGGAACCA 60.291 50.000 0.00 0.00 34.36 3.67
3845 4120 3.130160 GCTTCTTGCCAGCTCCGG 61.130 66.667 0.00 0.00 34.15 5.14
3854 4129 4.033776 CAGCTCCGGCCTTCCCAA 62.034 66.667 0.00 0.00 39.73 4.12
3855 4130 4.035102 AGCTCCGGCCTTCCCAAC 62.035 66.667 0.00 0.00 39.73 3.77
3857 4132 3.646715 CTCCGGCCTTCCCAACCA 61.647 66.667 0.00 0.00 0.00 3.67
3858 4133 3.920093 CTCCGGCCTTCCCAACCAC 62.920 68.421 0.00 0.00 0.00 4.16
3862 4137 3.961414 GCCTTCCCAACCACCCGA 61.961 66.667 0.00 0.00 0.00 5.14
3863 4138 2.351276 CCTTCCCAACCACCCGAG 59.649 66.667 0.00 0.00 0.00 4.63
3864 4139 2.351276 CTTCCCAACCACCCGAGG 59.649 66.667 0.00 0.00 0.00 4.63
3865 4140 2.448931 TTCCCAACCACCCGAGGT 60.449 61.111 0.00 0.00 45.91 3.85
3866 4141 1.152074 TTCCCAACCACCCGAGGTA 60.152 57.895 0.00 0.00 42.25 3.08
3867 4142 0.548197 TTCCCAACCACCCGAGGTAT 60.548 55.000 0.00 0.00 42.25 2.73
3868 4143 0.548197 TCCCAACCACCCGAGGTATT 60.548 55.000 0.00 0.00 42.25 1.89
3869 4144 0.393808 CCCAACCACCCGAGGTATTG 60.394 60.000 10.08 10.08 42.25 1.90
3870 4145 0.326927 CCAACCACCCGAGGTATTGT 59.673 55.000 13.43 3.84 42.25 2.71
3871 4146 1.271707 CCAACCACCCGAGGTATTGTT 60.272 52.381 13.43 7.92 42.25 2.83
3872 4147 1.810151 CAACCACCCGAGGTATTGTTG 59.190 52.381 12.98 12.98 42.25 3.33
3873 4148 0.322187 ACCACCCGAGGTATTGTTGC 60.322 55.000 0.00 0.00 40.98 4.17
3874 4149 0.322098 CCACCCGAGGTATTGTTGCA 60.322 55.000 0.00 0.00 32.11 4.08
3875 4150 0.802494 CACCCGAGGTATTGTTGCAC 59.198 55.000 0.00 0.00 32.11 4.57
3876 4151 0.398696 ACCCGAGGTATTGTTGCACA 59.601 50.000 0.00 0.00 32.11 4.57
3877 4152 1.004277 ACCCGAGGTATTGTTGCACAT 59.996 47.619 0.00 0.00 32.11 3.21
3878 4153 1.401552 CCCGAGGTATTGTTGCACATG 59.598 52.381 0.00 0.00 0.00 3.21
3879 4154 2.083774 CCGAGGTATTGTTGCACATGT 58.916 47.619 0.00 0.00 0.00 3.21
3880 4155 2.159531 CCGAGGTATTGTTGCACATGTG 60.160 50.000 21.83 21.83 0.00 3.21
3890 4165 3.168271 CACATGTGCTTCGGACCG 58.832 61.111 13.94 7.84 0.00 4.79
3891 4166 1.667830 CACATGTGCTTCGGACCGT 60.668 57.895 13.94 0.00 0.00 4.83
3892 4167 1.070786 ACATGTGCTTCGGACCGTT 59.929 52.632 14.79 0.00 0.00 4.44
3893 4168 1.227999 ACATGTGCTTCGGACCGTTG 61.228 55.000 14.79 9.03 0.00 4.10
3894 4169 0.948623 CATGTGCTTCGGACCGTTGA 60.949 55.000 14.79 0.44 0.00 3.18
3895 4170 0.036388 ATGTGCTTCGGACCGTTGAT 60.036 50.000 14.79 0.00 0.00 2.57
3896 4171 0.948623 TGTGCTTCGGACCGTTGATG 60.949 55.000 14.79 0.00 0.00 3.07
3897 4172 0.949105 GTGCTTCGGACCGTTGATGT 60.949 55.000 14.79 0.00 0.00 3.06
3898 4173 0.669318 TGCTTCGGACCGTTGATGTC 60.669 55.000 14.79 0.00 0.00 3.06
3899 4174 0.389948 GCTTCGGACCGTTGATGTCT 60.390 55.000 14.79 0.00 33.22 3.41
3900 4175 1.135199 GCTTCGGACCGTTGATGTCTA 60.135 52.381 14.79 0.00 33.22 2.59
3901 4176 2.527100 CTTCGGACCGTTGATGTCTAC 58.473 52.381 14.79 0.00 33.22 2.59
3902 4177 1.830279 TCGGACCGTTGATGTCTACT 58.170 50.000 14.79 0.00 33.22 2.57
3903 4178 2.989909 TCGGACCGTTGATGTCTACTA 58.010 47.619 14.79 0.00 33.22 1.82
3904 4179 2.679837 TCGGACCGTTGATGTCTACTAC 59.320 50.000 14.79 0.00 33.22 2.73
3905 4180 2.421073 CGGACCGTTGATGTCTACTACA 59.579 50.000 5.48 0.00 43.86 2.74
3906 4181 3.730061 CGGACCGTTGATGTCTACTACAC 60.730 52.174 5.48 0.00 42.09 2.90
3907 4182 3.192001 GGACCGTTGATGTCTACTACACA 59.808 47.826 0.00 0.00 42.09 3.72
3908 4183 4.321452 GGACCGTTGATGTCTACTACACAA 60.321 45.833 0.00 0.00 42.09 3.33
3909 4184 4.553323 ACCGTTGATGTCTACTACACAAC 58.447 43.478 0.00 0.00 42.09 3.32
3910 4185 3.924686 CCGTTGATGTCTACTACACAACC 59.075 47.826 0.00 0.00 42.09 3.77
3911 4186 4.321750 CCGTTGATGTCTACTACACAACCT 60.322 45.833 0.00 0.00 42.09 3.50
3912 4187 5.227908 CGTTGATGTCTACTACACAACCTT 58.772 41.667 0.00 0.00 42.09 3.50
3913 4188 5.345202 CGTTGATGTCTACTACACAACCTTC 59.655 44.000 0.00 0.00 42.09 3.46
3914 4189 6.456501 GTTGATGTCTACTACACAACCTTCT 58.543 40.000 0.00 0.00 42.09 2.85
3915 4190 6.665992 TGATGTCTACTACACAACCTTCTT 57.334 37.500 0.00 0.00 42.09 2.52
3916 4191 6.688578 TGATGTCTACTACACAACCTTCTTC 58.311 40.000 0.00 0.00 42.09 2.87
3917 4192 6.493802 TGATGTCTACTACACAACCTTCTTCT 59.506 38.462 0.00 0.00 42.09 2.85
3918 4193 6.726490 TGTCTACTACACAACCTTCTTCTT 57.274 37.500 0.00 0.00 31.43 2.52
3919 4194 6.513180 TGTCTACTACACAACCTTCTTCTTG 58.487 40.000 0.00 0.00 31.43 3.02
3920 4195 6.097839 TGTCTACTACACAACCTTCTTCTTGT 59.902 38.462 0.00 0.00 31.43 3.16
3921 4196 7.286087 TGTCTACTACACAACCTTCTTCTTGTA 59.714 37.037 0.00 0.00 31.43 2.41
3922 4197 7.808856 GTCTACTACACAACCTTCTTCTTGTAG 59.191 40.741 5.27 5.27 41.37 2.74
3923 4198 6.726490 ACTACACAACCTTCTTCTTGTAGA 57.274 37.500 12.31 0.00 39.06 2.59
3924 4199 6.514063 ACTACACAACCTTCTTCTTGTAGAC 58.486 40.000 12.31 0.00 39.06 2.59
3925 4200 4.369182 ACACAACCTTCTTCTTGTAGACG 58.631 43.478 0.00 0.00 0.00 4.18
3926 4201 4.142004 ACACAACCTTCTTCTTGTAGACGT 60.142 41.667 0.00 0.00 0.00 4.34
3927 4202 4.809426 CACAACCTTCTTCTTGTAGACGTT 59.191 41.667 0.00 0.00 0.00 3.99
3928 4203 4.809426 ACAACCTTCTTCTTGTAGACGTTG 59.191 41.667 0.00 0.00 38.92 4.10
3929 4204 4.667519 ACCTTCTTCTTGTAGACGTTGT 57.332 40.909 0.00 0.00 0.00 3.32
3930 4205 5.019785 ACCTTCTTCTTGTAGACGTTGTT 57.980 39.130 0.00 0.00 0.00 2.83
3931 4206 4.809426 ACCTTCTTCTTGTAGACGTTGTTG 59.191 41.667 0.00 0.00 0.00 3.33
3932 4207 4.211374 CCTTCTTCTTGTAGACGTTGTTGG 59.789 45.833 0.00 0.00 0.00 3.77
3933 4208 3.724374 TCTTCTTGTAGACGTTGTTGGG 58.276 45.455 0.00 0.00 0.00 4.12
3934 4209 1.873698 TCTTGTAGACGTTGTTGGGC 58.126 50.000 0.00 0.00 0.00 5.36
3935 4210 0.872388 CTTGTAGACGTTGTTGGGCC 59.128 55.000 0.00 0.00 0.00 5.80
3936 4211 0.470766 TTGTAGACGTTGTTGGGCCT 59.529 50.000 4.53 0.00 0.00 5.19
3937 4212 0.034337 TGTAGACGTTGTTGGGCCTC 59.966 55.000 4.53 0.00 0.00 4.70
3938 4213 0.672711 GTAGACGTTGTTGGGCCTCC 60.673 60.000 4.53 0.00 0.00 4.30
3939 4214 1.122632 TAGACGTTGTTGGGCCTCCA 61.123 55.000 4.53 0.00 42.25 3.86
3947 4222 2.853542 TGGGCCTCCAAGTGCAGA 60.854 61.111 4.53 0.00 40.73 4.26
3948 4223 2.045536 GGGCCTCCAAGTGCAGAG 60.046 66.667 0.84 0.00 0.00 3.35
3952 4227 3.733709 CCTCCAAGTGCAGAGGTTT 57.266 52.632 10.81 0.00 44.01 3.27
3953 4228 1.242076 CCTCCAAGTGCAGAGGTTTG 58.758 55.000 10.81 0.88 44.01 2.93
3954 4229 1.477558 CCTCCAAGTGCAGAGGTTTGT 60.478 52.381 10.81 0.00 44.01 2.83
3955 4230 2.224523 CCTCCAAGTGCAGAGGTTTGTA 60.225 50.000 10.81 0.00 44.01 2.41
3956 4231 3.070018 CTCCAAGTGCAGAGGTTTGTAG 58.930 50.000 0.00 0.00 0.00 2.74
3957 4232 2.154462 CCAAGTGCAGAGGTTTGTAGG 58.846 52.381 0.00 0.00 0.00 3.18
3958 4233 2.224523 CCAAGTGCAGAGGTTTGTAGGA 60.225 50.000 0.00 0.00 0.00 2.94
3959 4234 2.808543 CAAGTGCAGAGGTTTGTAGGAC 59.191 50.000 0.00 0.00 0.00 3.85
3960 4235 2.047061 AGTGCAGAGGTTTGTAGGACA 58.953 47.619 0.00 0.00 0.00 4.02
3961 4236 2.037772 AGTGCAGAGGTTTGTAGGACAG 59.962 50.000 0.00 0.00 0.00 3.51
3962 4237 2.047061 TGCAGAGGTTTGTAGGACAGT 58.953 47.619 0.00 0.00 0.00 3.55
3963 4238 3.006537 GTGCAGAGGTTTGTAGGACAGTA 59.993 47.826 0.00 0.00 0.00 2.74
3964 4239 3.258372 TGCAGAGGTTTGTAGGACAGTAG 59.742 47.826 0.00 0.00 0.00 2.57
3965 4240 3.851098 CAGAGGTTTGTAGGACAGTAGC 58.149 50.000 0.00 0.00 0.00 3.58
3966 4241 3.258372 CAGAGGTTTGTAGGACAGTAGCA 59.742 47.826 0.00 0.00 0.00 3.49
3967 4242 3.901844 AGAGGTTTGTAGGACAGTAGCAA 59.098 43.478 0.00 0.00 0.00 3.91
3968 4243 4.347000 AGAGGTTTGTAGGACAGTAGCAAA 59.653 41.667 0.00 0.00 0.00 3.68
3969 4244 5.013183 AGAGGTTTGTAGGACAGTAGCAAAT 59.987 40.000 0.00 0.00 32.71 2.32
3970 4245 5.631119 AGGTTTGTAGGACAGTAGCAAATT 58.369 37.500 0.00 0.00 32.71 1.82
3971 4246 6.068670 AGGTTTGTAGGACAGTAGCAAATTT 58.931 36.000 0.00 0.00 32.71 1.82
3972 4247 6.206829 AGGTTTGTAGGACAGTAGCAAATTTC 59.793 38.462 0.00 0.00 32.71 2.17
3973 4248 6.379386 GTTTGTAGGACAGTAGCAAATTTCC 58.621 40.000 0.00 0.00 32.71 3.13
3974 4249 4.585879 TGTAGGACAGTAGCAAATTTCCC 58.414 43.478 0.00 0.00 0.00 3.97
3975 4250 4.288626 TGTAGGACAGTAGCAAATTTCCCT 59.711 41.667 0.00 0.00 0.00 4.20
3976 4251 3.956744 AGGACAGTAGCAAATTTCCCTC 58.043 45.455 0.00 0.00 0.00 4.30
3977 4252 3.330701 AGGACAGTAGCAAATTTCCCTCA 59.669 43.478 0.00 0.00 0.00 3.86
3978 4253 4.079253 GGACAGTAGCAAATTTCCCTCAA 58.921 43.478 0.00 0.00 0.00 3.02
3979 4254 4.706962 GGACAGTAGCAAATTTCCCTCAAT 59.293 41.667 0.00 0.00 0.00 2.57
3980 4255 5.185828 GGACAGTAGCAAATTTCCCTCAATT 59.814 40.000 0.00 0.00 0.00 2.32
3981 4256 6.377146 GGACAGTAGCAAATTTCCCTCAATTA 59.623 38.462 0.00 0.00 0.00 1.40
3982 4257 7.396540 ACAGTAGCAAATTTCCCTCAATTAG 57.603 36.000 0.00 0.00 0.00 1.73
3983 4258 7.175104 ACAGTAGCAAATTTCCCTCAATTAGA 58.825 34.615 0.00 0.00 0.00 2.10
3984 4259 7.836183 ACAGTAGCAAATTTCCCTCAATTAGAT 59.164 33.333 0.00 0.00 0.00 1.98
3985 4260 8.133627 CAGTAGCAAATTTCCCTCAATTAGATG 58.866 37.037 0.00 0.00 0.00 2.90
3986 4261 8.055181 AGTAGCAAATTTCCCTCAATTAGATGA 58.945 33.333 0.00 0.00 0.00 2.92
3987 4262 7.105241 AGCAAATTTCCCTCAATTAGATGAC 57.895 36.000 0.00 0.00 0.00 3.06
3988 4263 6.097412 AGCAAATTTCCCTCAATTAGATGACC 59.903 38.462 0.00 0.00 0.00 4.02
3989 4264 6.097412 GCAAATTTCCCTCAATTAGATGACCT 59.903 38.462 0.00 0.00 0.00 3.85
3990 4265 7.285401 GCAAATTTCCCTCAATTAGATGACCTA 59.715 37.037 0.00 0.00 0.00 3.08
3991 4266 9.189156 CAAATTTCCCTCAATTAGATGACCTAA 57.811 33.333 0.00 0.00 41.23 2.69
3992 4267 8.986929 AATTTCCCTCAATTAGATGACCTAAG 57.013 34.615 0.00 0.00 40.40 2.18
3993 4268 7.749377 TTTCCCTCAATTAGATGACCTAAGA 57.251 36.000 0.00 0.00 40.40 2.10
3994 4269 7.937700 TTCCCTCAATTAGATGACCTAAGAT 57.062 36.000 0.00 0.00 40.40 2.40
3995 4270 7.937700 TCCCTCAATTAGATGACCTAAGATT 57.062 36.000 0.00 0.00 40.40 2.40
3996 4271 8.337118 TCCCTCAATTAGATGACCTAAGATTT 57.663 34.615 0.00 0.00 40.40 2.17
3997 4272 9.447279 TCCCTCAATTAGATGACCTAAGATTTA 57.553 33.333 0.00 0.00 40.40 1.40
4005 4280 9.929180 TTAGATGACCTAAGATTTATCAATCCG 57.071 33.333 0.00 0.00 39.95 4.18
4006 4281 7.967908 AGATGACCTAAGATTTATCAATCCGT 58.032 34.615 0.00 0.00 39.95 4.69
4007 4282 7.875041 AGATGACCTAAGATTTATCAATCCGTG 59.125 37.037 0.00 0.00 39.95 4.94
4008 4283 6.288294 TGACCTAAGATTTATCAATCCGTGG 58.712 40.000 0.00 0.00 39.95 4.94
4009 4284 5.621193 ACCTAAGATTTATCAATCCGTGGG 58.379 41.667 0.00 0.16 39.95 4.61
4010 4285 5.368523 ACCTAAGATTTATCAATCCGTGGGA 59.631 40.000 9.15 0.00 39.95 4.37
4011 4286 5.934625 CCTAAGATTTATCAATCCGTGGGAG 59.065 44.000 0.00 0.00 39.95 4.30
4012 4287 4.357918 AGATTTATCAATCCGTGGGAGG 57.642 45.455 0.00 0.00 39.95 4.30
4013 4288 3.716872 AGATTTATCAATCCGTGGGAGGT 59.283 43.478 0.00 0.00 39.95 3.85
4014 4289 3.275617 TTTATCAATCCGTGGGAGGTG 57.724 47.619 0.00 0.00 34.05 4.00
4015 4290 1.874129 TATCAATCCGTGGGAGGTGT 58.126 50.000 0.00 0.00 34.05 4.16
4016 4291 1.874129 ATCAATCCGTGGGAGGTGTA 58.126 50.000 0.00 0.00 34.05 2.90
4017 4292 1.191535 TCAATCCGTGGGAGGTGTAG 58.808 55.000 0.00 0.00 34.05 2.74
4018 4293 0.178068 CAATCCGTGGGAGGTGTAGG 59.822 60.000 0.00 0.00 34.05 3.18
4019 4294 0.042131 AATCCGTGGGAGGTGTAGGA 59.958 55.000 0.00 0.00 34.05 2.94
4020 4295 0.264955 ATCCGTGGGAGGTGTAGGAT 59.735 55.000 0.00 0.00 34.05 3.24
4021 4296 0.686441 TCCGTGGGAGGTGTAGGATG 60.686 60.000 0.00 0.00 0.00 3.51
4022 4297 0.686441 CCGTGGGAGGTGTAGGATGA 60.686 60.000 0.00 0.00 0.00 2.92
4023 4298 1.191535 CGTGGGAGGTGTAGGATGAA 58.808 55.000 0.00 0.00 0.00 2.57
4024 4299 1.137086 CGTGGGAGGTGTAGGATGAAG 59.863 57.143 0.00 0.00 0.00 3.02
4025 4300 2.467880 GTGGGAGGTGTAGGATGAAGA 58.532 52.381 0.00 0.00 0.00 2.87
4026 4301 3.041946 GTGGGAGGTGTAGGATGAAGAT 58.958 50.000 0.00 0.00 0.00 2.40
4027 4302 3.041211 TGGGAGGTGTAGGATGAAGATG 58.959 50.000 0.00 0.00 0.00 2.90
4028 4303 2.370189 GGGAGGTGTAGGATGAAGATGG 59.630 54.545 0.00 0.00 0.00 3.51
4029 4304 3.041946 GGAGGTGTAGGATGAAGATGGT 58.958 50.000 0.00 0.00 0.00 3.55
4030 4305 3.070302 GGAGGTGTAGGATGAAGATGGTC 59.930 52.174 0.00 0.00 0.00 4.02
4031 4306 3.964031 GAGGTGTAGGATGAAGATGGTCT 59.036 47.826 0.00 0.00 0.00 3.85
4032 4307 3.964031 AGGTGTAGGATGAAGATGGTCTC 59.036 47.826 0.00 0.00 0.00 3.36
4033 4308 3.964031 GGTGTAGGATGAAGATGGTCTCT 59.036 47.826 0.00 0.00 34.96 3.10
4034 4309 4.038642 GGTGTAGGATGAAGATGGTCTCTC 59.961 50.000 0.00 0.00 31.03 3.20
4035 4310 4.892934 GTGTAGGATGAAGATGGTCTCTCT 59.107 45.833 0.00 0.00 31.03 3.10
4036 4311 5.009610 GTGTAGGATGAAGATGGTCTCTCTC 59.990 48.000 0.00 0.00 31.03 3.20
4037 4312 4.262891 AGGATGAAGATGGTCTCTCTCA 57.737 45.455 0.00 0.00 31.03 3.27
4038 4313 4.618635 AGGATGAAGATGGTCTCTCTCAA 58.381 43.478 0.00 0.00 31.03 3.02
4039 4314 4.650588 AGGATGAAGATGGTCTCTCTCAAG 59.349 45.833 0.00 0.00 31.03 3.02
4040 4315 3.883830 TGAAGATGGTCTCTCTCAAGC 57.116 47.619 0.00 0.00 31.03 4.01
4041 4316 3.168292 TGAAGATGGTCTCTCTCAAGCA 58.832 45.455 0.00 0.00 31.03 3.91
4042 4317 3.580022 TGAAGATGGTCTCTCTCAAGCAA 59.420 43.478 0.00 0.00 31.03 3.91
4043 4318 3.608316 AGATGGTCTCTCTCAAGCAAC 57.392 47.619 0.00 0.00 0.00 4.17
4044 4319 2.235898 AGATGGTCTCTCTCAAGCAACC 59.764 50.000 0.00 0.00 0.00 3.77
4045 4320 0.687354 TGGTCTCTCTCAAGCAACCC 59.313 55.000 0.00 0.00 0.00 4.11
4046 4321 0.980423 GGTCTCTCTCAAGCAACCCT 59.020 55.000 0.00 0.00 0.00 4.34
4047 4322 1.338579 GGTCTCTCTCAAGCAACCCTG 60.339 57.143 0.00 0.00 0.00 4.45
4060 4335 3.742433 CAACCCTGCAACCAAATAACA 57.258 42.857 0.00 0.00 0.00 2.41
4061 4336 4.065321 CAACCCTGCAACCAAATAACAA 57.935 40.909 0.00 0.00 0.00 2.83
4062 4337 4.446371 CAACCCTGCAACCAAATAACAAA 58.554 39.130 0.00 0.00 0.00 2.83
4063 4338 4.335400 ACCCTGCAACCAAATAACAAAG 57.665 40.909 0.00 0.00 0.00 2.77
4064 4339 3.964031 ACCCTGCAACCAAATAACAAAGA 59.036 39.130 0.00 0.00 0.00 2.52
4065 4340 4.039124 ACCCTGCAACCAAATAACAAAGAG 59.961 41.667 0.00 0.00 0.00 2.85
4066 4341 4.039124 CCCTGCAACCAAATAACAAAGAGT 59.961 41.667 0.00 0.00 0.00 3.24
4067 4342 5.222631 CCTGCAACCAAATAACAAAGAGTC 58.777 41.667 0.00 0.00 0.00 3.36
4068 4343 5.010012 CCTGCAACCAAATAACAAAGAGTCT 59.990 40.000 0.00 0.00 0.00 3.24
4069 4344 6.072112 TGCAACCAAATAACAAAGAGTCTC 57.928 37.500 0.00 0.00 0.00 3.36
4070 4345 5.827797 TGCAACCAAATAACAAAGAGTCTCT 59.172 36.000 0.00 0.00 0.00 3.10
4071 4346 6.321181 TGCAACCAAATAACAAAGAGTCTCTT 59.679 34.615 9.43 9.43 38.59 2.85
4072 4347 6.638468 GCAACCAAATAACAAAGAGTCTCTTG 59.362 38.462 15.90 11.96 36.71 3.02
4073 4348 7.682021 GCAACCAAATAACAAAGAGTCTCTTGT 60.682 37.037 15.90 12.54 36.71 3.16
4074 4349 7.264373 ACCAAATAACAAAGAGTCTCTTGTG 57.736 36.000 15.90 16.38 36.71 3.33
4075 4350 6.828785 ACCAAATAACAAAGAGTCTCTTGTGT 59.171 34.615 15.90 16.93 36.71 3.72
4076 4351 7.012421 ACCAAATAACAAAGAGTCTCTTGTGTC 59.988 37.037 15.90 0.00 36.71 3.67
4077 4352 7.355778 CAAATAACAAAGAGTCTCTTGTGTCC 58.644 38.462 15.90 0.00 36.71 4.02
4078 4353 3.477210 ACAAAGAGTCTCTTGTGTCCC 57.523 47.619 15.90 0.00 36.71 4.46
4079 4354 2.104963 ACAAAGAGTCTCTTGTGTCCCC 59.895 50.000 15.90 0.00 36.71 4.81
4080 4355 2.103153 AAGAGTCTCTTGTGTCCCCA 57.897 50.000 14.48 0.00 34.98 4.96
4081 4356 2.103153 AGAGTCTCTTGTGTCCCCAA 57.897 50.000 0.00 0.00 0.00 4.12
4082 4357 1.694696 AGAGTCTCTTGTGTCCCCAAC 59.305 52.381 0.00 0.00 0.00 3.77
4083 4358 1.416401 GAGTCTCTTGTGTCCCCAACA 59.584 52.381 0.00 0.00 34.78 3.33
4090 4365 3.428100 TGTCCCCAACACACCCAA 58.572 55.556 0.00 0.00 31.20 4.12
4091 4366 1.934410 TGTCCCCAACACACCCAAT 59.066 52.632 0.00 0.00 31.20 3.16
4092 4367 1.149986 TGTCCCCAACACACCCAATA 58.850 50.000 0.00 0.00 31.20 1.90
4093 4368 1.202952 TGTCCCCAACACACCCAATAC 60.203 52.381 0.00 0.00 31.20 1.89
4094 4369 1.149986 TCCCCAACACACCCAATACA 58.850 50.000 0.00 0.00 0.00 2.29
4095 4370 1.499438 TCCCCAACACACCCAATACAA 59.501 47.619 0.00 0.00 0.00 2.41
4096 4371 2.110899 TCCCCAACACACCCAATACAAT 59.889 45.455 0.00 0.00 0.00 2.71
4097 4372 2.233431 CCCCAACACACCCAATACAATG 59.767 50.000 0.00 0.00 0.00 2.82
4098 4373 2.233431 CCCAACACACCCAATACAATGG 59.767 50.000 0.00 0.00 40.35 3.16
4099 4374 2.896685 CCAACACACCCAATACAATGGT 59.103 45.455 0.00 0.00 38.91 3.55
4100 4375 4.082845 CCAACACACCCAATACAATGGTA 58.917 43.478 0.00 0.00 38.91 3.25
4101 4376 4.524714 CCAACACACCCAATACAATGGTAA 59.475 41.667 0.00 0.00 38.91 2.85
4102 4377 5.011125 CCAACACACCCAATACAATGGTAAA 59.989 40.000 0.00 0.00 38.91 2.01
4103 4378 6.295575 CCAACACACCCAATACAATGGTAAAT 60.296 38.462 0.00 0.00 38.91 1.40
4104 4379 6.926630 ACACACCCAATACAATGGTAAATT 57.073 33.333 0.00 0.00 38.91 1.82
4105 4380 6.696411 ACACACCCAATACAATGGTAAATTG 58.304 36.000 0.00 0.00 38.91 2.32
4106 4381 6.268847 ACACACCCAATACAATGGTAAATTGT 59.731 34.615 8.60 8.60 43.74 2.71
4107 4382 7.451877 ACACACCCAATACAATGGTAAATTGTA 59.548 33.333 12.01 12.01 45.16 2.41
4116 4391 7.095695 ACAATGGTAAATTGTATAGGTGCAC 57.904 36.000 8.80 8.80 40.12 4.57
4117 4392 6.889722 ACAATGGTAAATTGTATAGGTGCACT 59.110 34.615 17.98 5.41 40.12 4.40
4118 4393 8.050325 ACAATGGTAAATTGTATAGGTGCACTA 58.950 33.333 17.98 7.61 40.12 2.74
4119 4394 8.559536 CAATGGTAAATTGTATAGGTGCACTAG 58.440 37.037 17.98 0.00 34.56 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 5.483685 GGACTGCCCTCCTTTTAAAATTT 57.516 39.130 0.09 0.00 0.00 1.82
29 31 5.520649 GGCTGACCTCTTTTCTAGTTAATCG 59.479 44.000 0.00 0.00 0.00 3.34
53 55 8.632679 ACATGCATGGGTTAAATAATTCTACTG 58.367 33.333 29.41 0.00 0.00 2.74
78 80 1.597663 CGCCCACCAATATCTTTCGAC 59.402 52.381 0.00 0.00 0.00 4.20
80 82 0.307760 GCGCCCACCAATATCTTTCG 59.692 55.000 0.00 0.00 0.00 3.46
162 164 6.937436 TTCTTTCCTTCTTAAAGTGACACC 57.063 37.500 0.84 0.00 35.79 4.16
235 238 6.932400 ACATGTGTTTTCAACTCCTATACGAA 59.068 34.615 0.00 0.00 0.00 3.85
296 299 3.754965 TGCAGTGGAGCAAGAACTTTAT 58.245 40.909 0.00 0.00 42.46 1.40
400 403 1.951602 TCATGTCCATGCTATGCTTGC 59.048 47.619 2.33 0.00 38.65 4.01
401 404 2.946990 TGTCATGTCCATGCTATGCTTG 59.053 45.455 2.33 0.00 38.65 4.01
402 405 3.286329 TGTCATGTCCATGCTATGCTT 57.714 42.857 2.33 0.00 38.65 3.91
403 406 3.286329 TTGTCATGTCCATGCTATGCT 57.714 42.857 2.33 0.00 38.65 3.79
405 408 4.637091 TGAGTTTGTCATGTCCATGCTATG 59.363 41.667 2.33 0.00 38.65 2.23
406 409 4.847198 TGAGTTTGTCATGTCCATGCTAT 58.153 39.130 2.33 0.00 38.65 2.97
407 410 4.256110 CTGAGTTTGTCATGTCCATGCTA 58.744 43.478 2.33 0.00 38.65 3.49
408 411 3.079578 CTGAGTTTGTCATGTCCATGCT 58.920 45.455 2.33 0.00 38.65 3.79
409 412 2.816087 ACTGAGTTTGTCATGTCCATGC 59.184 45.455 2.33 0.00 38.65 4.06
410 413 3.189910 CCACTGAGTTTGTCATGTCCATG 59.810 47.826 0.71 0.71 40.09 3.66
424 433 4.653801 TGTACATATATGGTGCCACTGAGT 59.346 41.667 16.96 0.00 0.00 3.41
430 439 5.995446 TGTTCTTGTACATATATGGTGCCA 58.005 37.500 16.96 5.00 0.00 4.92
431 440 7.148407 GCTATGTTCTTGTACATATATGGTGCC 60.148 40.741 16.96 2.60 39.54 5.01
500 509 3.601443 AGCTAAGAGACAGAACGCAAT 57.399 42.857 0.00 0.00 0.00 3.56
550 559 7.094762 GGATTGTACTCCTTGGTTCTAAACAAG 60.095 40.741 12.58 12.58 42.77 3.16
630 640 0.107165 GGGTATGGTTCTGGGTGAGC 60.107 60.000 0.00 0.00 0.00 4.26
815 825 5.420739 GGAGGAGGACTATATAGAGCTTTGG 59.579 48.000 16.79 0.00 0.00 3.28
894 904 4.517934 TACGGCGAGGGAGAGGGG 62.518 72.222 16.62 0.00 0.00 4.79
1116 1132 4.382320 GCCTTGTACCCGGACGCA 62.382 66.667 0.73 0.00 0.00 5.24
1254 1270 3.864686 ATGGCGCGCTTGCTTACG 61.865 61.111 32.29 0.00 36.08 3.18
1281 1302 3.274586 CGGATGACATGGCGCCAG 61.275 66.667 35.36 26.66 0.00 4.85
1300 1321 2.284684 CGAATCAGCGACACGAATTCAG 60.285 50.000 6.22 0.00 0.00 3.02
1541 1568 1.188219 ATCTCACCTGTGACGCCACT 61.188 55.000 2.85 0.00 43.55 4.00
1693 1731 2.496070 TCACGGGGACTATTTCTCACAG 59.504 50.000 0.00 0.00 0.00 3.66
1718 1756 0.307760 GGGTTGCCGCTAATCAATCG 59.692 55.000 0.00 0.00 0.00 3.34
1732 1770 4.326766 CGTGCGCTGTTGGGGTTG 62.327 66.667 9.73 0.00 0.00 3.77
1878 1916 4.388499 GAAGCTCGCCGGGTTGGA 62.388 66.667 2.18 0.00 42.00 3.53
1946 1984 1.515088 CGAGTGCGTCTGCCTGTAG 60.515 63.158 0.00 0.00 41.78 2.74
2255 2293 2.202453 GACGAGTTCTCGGGCGTC 60.202 66.667 22.90 10.58 44.83 5.19
2386 2442 9.995957 CGTACATACACATTGAATCCAAAAATA 57.004 29.630 0.00 0.00 35.67 1.40
2387 2443 8.735315 TCGTACATACACATTGAATCCAAAAAT 58.265 29.630 0.00 0.00 35.67 1.82
2388 2444 8.100508 TCGTACATACACATTGAATCCAAAAA 57.899 30.769 0.00 0.00 35.67 1.94
2393 2449 6.705782 CAACTCGTACATACACATTGAATCC 58.294 40.000 0.00 0.00 0.00 3.01
2394 2450 6.183360 TGCAACTCGTACATACACATTGAATC 60.183 38.462 0.00 0.00 0.00 2.52
2397 2453 4.561105 TGCAACTCGTACATACACATTGA 58.439 39.130 0.00 0.00 0.00 2.57
2399 2455 5.874810 AGAATGCAACTCGTACATACACATT 59.125 36.000 0.00 0.00 0.00 2.71
2435 2496 2.552743 GCCGATAGCAGGTTAATTTCCC 59.447 50.000 0.00 0.00 42.97 3.97
2473 2534 4.657824 CGCCGTCACCACCGTCTT 62.658 66.667 0.00 0.00 0.00 3.01
2498 2559 4.418401 CGGTTGCCGGCCATGTTG 62.418 66.667 26.77 4.91 44.15 3.33
2633 2799 2.069273 GTGGTGCACTTGTAGTAGCTG 58.931 52.381 17.98 0.00 0.00 4.24
3123 3289 0.874390 TTGCCATTTCTGACACTCGC 59.126 50.000 0.00 0.00 0.00 5.03
3145 3311 2.842394 AAGCTCCATCTCGCCGTGTG 62.842 60.000 0.00 0.00 0.00 3.82
3151 3317 2.224161 ACAGGATAAAGCTCCATCTCGC 60.224 50.000 7.28 0.00 37.81 5.03
3231 3397 3.869623 CAGCCCTCTGCAACTATGT 57.130 52.632 0.00 0.00 44.83 2.29
3271 3440 6.882458 ATATTTTCTTTACTCCGACGTGTC 57.118 37.500 0.00 0.00 0.00 3.67
3359 3530 7.905604 TTCAACAACATACTTCTATGTGGAG 57.094 36.000 2.81 0.00 41.92 3.86
3426 3597 6.335777 CACTATCTCATCATTCACACTGTGA 58.664 40.000 15.86 7.84 41.09 3.58
3427 3598 5.522824 CCACTATCTCATCATTCACACTGTG 59.477 44.000 6.19 6.19 34.45 3.66
3428 3599 5.188555 ACCACTATCTCATCATTCACACTGT 59.811 40.000 0.00 0.00 0.00 3.55
3429 3600 5.668471 ACCACTATCTCATCATTCACACTG 58.332 41.667 0.00 0.00 0.00 3.66
3430 3601 5.946942 ACCACTATCTCATCATTCACACT 57.053 39.130 0.00 0.00 0.00 3.55
3431 3602 7.212976 ACATACCACTATCTCATCATTCACAC 58.787 38.462 0.00 0.00 0.00 3.82
3432 3603 7.365497 ACATACCACTATCTCATCATTCACA 57.635 36.000 0.00 0.00 0.00 3.58
3471 3738 1.107114 ATCTGAGGTCTGGTACGCTG 58.893 55.000 0.00 0.00 0.00 5.18
3505 3772 9.202273 GCAACTACAAAATGATTGGATTACAAA 57.798 29.630 0.00 0.00 43.46 2.83
3506 3773 8.363390 TGCAACTACAAAATGATTGGATTACAA 58.637 29.630 0.00 0.00 44.54 2.41
3507 3774 7.812191 GTGCAACTACAAAATGATTGGATTACA 59.188 33.333 0.00 0.00 0.00 2.41
3508 3775 7.812191 TGTGCAACTACAAAATGATTGGATTAC 59.188 33.333 0.00 0.00 38.04 1.89
3509 3776 7.890515 TGTGCAACTACAAAATGATTGGATTA 58.109 30.769 0.00 0.00 38.04 1.75
3510 3777 6.757237 TGTGCAACTACAAAATGATTGGATT 58.243 32.000 0.00 0.00 38.04 3.01
3511 3778 6.343716 TGTGCAACTACAAAATGATTGGAT 57.656 33.333 0.00 0.00 38.04 3.41
3531 3798 5.664457 TGATTGTTCAGTCTATAGCCTGTG 58.336 41.667 10.43 0.00 0.00 3.66
3536 3803 9.922305 GTATTGTTTGATTGTTCAGTCTATAGC 57.078 33.333 0.00 0.00 32.27 2.97
3552 3819 8.740123 ACCATAATTCGGTATGTATTGTTTGA 57.260 30.769 0.00 0.00 34.02 2.69
3593 3860 4.019591 AGTTCGGGCTTATAAAGTGGACTT 60.020 41.667 0.00 0.00 37.91 3.01
3691 3958 1.549203 GAGTGCATGGGTGGTGATTT 58.451 50.000 0.00 0.00 0.00 2.17
3699 3966 3.661648 GGGTGGGAGTGCATGGGT 61.662 66.667 0.00 0.00 0.00 4.51
3733 4000 2.921121 TCAAAATCGATGAAGTCGGTCG 59.079 45.455 0.00 0.00 44.46 4.79
3734 4001 3.062234 GGTCAAAATCGATGAAGTCGGTC 59.938 47.826 0.00 0.00 44.46 4.79
3743 4010 2.073056 TCACCACGGTCAAAATCGATG 58.927 47.619 0.00 0.00 0.00 3.84
3745 4012 1.069513 AGTCACCACGGTCAAAATCGA 59.930 47.619 0.00 0.00 0.00 3.59
3757 4024 1.014564 GCTAACTCGGCAGTCACCAC 61.015 60.000 0.00 0.00 29.93 4.16
3783 4050 0.107703 TCCACATTAAGGAGCTGGCG 60.108 55.000 0.00 0.00 0.00 5.69
3788 4055 2.488153 GTGTGGTTCCACATTAAGGAGC 59.512 50.000 24.46 8.23 46.65 4.70
3806 4073 3.795688 ATGGAGGTGTTTGATCTGTGT 57.204 42.857 0.00 0.00 0.00 3.72
3816 4091 1.615392 GCAAGAAGCAATGGAGGTGTT 59.385 47.619 0.00 0.00 44.79 3.32
3845 4120 3.920093 CTCGGGTGGTTGGGAAGGC 62.920 68.421 0.00 0.00 0.00 4.35
3846 4121 2.351276 CTCGGGTGGTTGGGAAGG 59.649 66.667 0.00 0.00 0.00 3.46
3847 4122 1.196104 TACCTCGGGTGGTTGGGAAG 61.196 60.000 5.90 0.00 41.22 3.46
3848 4123 0.548197 ATACCTCGGGTGGTTGGGAA 60.548 55.000 5.90 0.00 41.22 3.97
3849 4124 0.548197 AATACCTCGGGTGGTTGGGA 60.548 55.000 5.90 0.00 41.22 4.37
3850 4125 0.393808 CAATACCTCGGGTGGTTGGG 60.394 60.000 5.90 0.00 41.22 4.12
3851 4126 0.326927 ACAATACCTCGGGTGGTTGG 59.673 55.000 18.16 0.00 41.22 3.77
3852 4127 1.810151 CAACAATACCTCGGGTGGTTG 59.190 52.381 15.42 15.42 41.22 3.77
3853 4128 1.884928 GCAACAATACCTCGGGTGGTT 60.885 52.381 5.90 5.25 41.22 3.67
3854 4129 0.322187 GCAACAATACCTCGGGTGGT 60.322 55.000 5.90 3.75 43.66 4.16
3855 4130 0.322098 TGCAACAATACCTCGGGTGG 60.322 55.000 5.90 0.00 36.19 4.61
3856 4131 0.802494 GTGCAACAATACCTCGGGTG 59.198 55.000 5.90 0.00 34.96 4.61
3857 4132 3.243128 GTGCAACAATACCTCGGGT 57.757 52.632 0.00 1.14 36.79 5.28
3873 4148 1.227999 AACGGTCCGAAGCACATGTG 61.228 55.000 21.83 21.83 0.00 3.21
3874 4149 1.070786 AACGGTCCGAAGCACATGT 59.929 52.632 20.51 0.00 0.00 3.21
3875 4150 0.948623 TCAACGGTCCGAAGCACATG 60.949 55.000 20.51 5.20 0.00 3.21
3876 4151 0.036388 ATCAACGGTCCGAAGCACAT 60.036 50.000 20.51 0.00 0.00 3.21
3877 4152 0.948623 CATCAACGGTCCGAAGCACA 60.949 55.000 20.51 0.00 0.00 4.57
3878 4153 0.949105 ACATCAACGGTCCGAAGCAC 60.949 55.000 20.51 0.00 0.00 4.40
3879 4154 0.669318 GACATCAACGGTCCGAAGCA 60.669 55.000 20.51 0.00 0.00 3.91
3880 4155 0.389948 AGACATCAACGGTCCGAAGC 60.390 55.000 20.51 0.00 35.89 3.86
3881 4156 2.163815 AGTAGACATCAACGGTCCGAAG 59.836 50.000 20.51 9.87 35.89 3.79
3882 4157 2.165167 AGTAGACATCAACGGTCCGAA 58.835 47.619 20.51 3.03 35.89 4.30
3883 4158 1.830279 AGTAGACATCAACGGTCCGA 58.170 50.000 20.51 0.00 35.89 4.55
3884 4159 2.421073 TGTAGTAGACATCAACGGTCCG 59.579 50.000 10.48 10.48 35.89 4.79
3885 4160 3.192001 TGTGTAGTAGACATCAACGGTCC 59.808 47.826 0.00 0.00 41.14 4.46
3886 4161 4.430137 TGTGTAGTAGACATCAACGGTC 57.570 45.455 0.00 0.00 41.14 4.79
3887 4162 4.553323 GTTGTGTAGTAGACATCAACGGT 58.447 43.478 0.29 0.00 41.14 4.83
3888 4163 3.924686 GGTTGTGTAGTAGACATCAACGG 59.075 47.826 0.29 0.00 43.52 4.44
3889 4164 4.806330 AGGTTGTGTAGTAGACATCAACG 58.194 43.478 0.29 0.00 43.52 4.10
3890 4165 6.456501 AGAAGGTTGTGTAGTAGACATCAAC 58.543 40.000 0.29 11.41 42.77 3.18
3891 4166 6.665992 AGAAGGTTGTGTAGTAGACATCAA 57.334 37.500 0.29 0.00 41.14 2.57
3892 4167 6.493802 AGAAGAAGGTTGTGTAGTAGACATCA 59.506 38.462 0.29 0.00 41.14 3.07
3893 4168 6.926313 AGAAGAAGGTTGTGTAGTAGACATC 58.074 40.000 0.29 0.61 41.14 3.06
3894 4169 6.919775 AGAAGAAGGTTGTGTAGTAGACAT 57.080 37.500 0.29 0.00 41.14 3.06
3895 4170 6.097839 ACAAGAAGAAGGTTGTGTAGTAGACA 59.902 38.462 0.00 0.00 35.55 3.41
3896 4171 6.514063 ACAAGAAGAAGGTTGTGTAGTAGAC 58.486 40.000 0.00 0.00 35.55 2.59
3897 4172 6.726490 ACAAGAAGAAGGTTGTGTAGTAGA 57.274 37.500 0.00 0.00 35.55 2.59
3898 4173 7.808856 GTCTACAAGAAGAAGGTTGTGTAGTAG 59.191 40.741 8.12 0.00 39.49 2.57
3899 4174 7.521099 CGTCTACAAGAAGAAGGTTGTGTAGTA 60.521 40.741 8.12 0.00 39.49 1.82
3900 4175 6.514063 GTCTACAAGAAGAAGGTTGTGTAGT 58.486 40.000 8.12 0.00 39.49 2.73
3901 4176 5.629849 CGTCTACAAGAAGAAGGTTGTGTAG 59.370 44.000 0.00 0.00 39.72 2.74
3902 4177 5.068198 ACGTCTACAAGAAGAAGGTTGTGTA 59.932 40.000 0.00 0.00 37.46 2.90
3903 4178 4.142004 ACGTCTACAAGAAGAAGGTTGTGT 60.142 41.667 0.00 0.00 37.46 3.72
3904 4179 4.369182 ACGTCTACAAGAAGAAGGTTGTG 58.631 43.478 0.00 0.00 37.46 3.33
3905 4180 4.667519 ACGTCTACAAGAAGAAGGTTGT 57.332 40.909 0.00 0.00 40.08 3.32
3906 4181 4.809426 ACAACGTCTACAAGAAGAAGGTTG 59.191 41.667 13.28 13.28 42.32 3.77
3907 4182 5.019785 ACAACGTCTACAAGAAGAAGGTT 57.980 39.130 0.00 0.00 30.29 3.50
3908 4183 4.667519 ACAACGTCTACAAGAAGAAGGT 57.332 40.909 0.00 0.00 30.29 3.50
3909 4184 4.211374 CCAACAACGTCTACAAGAAGAAGG 59.789 45.833 0.00 0.00 30.29 3.46
3910 4185 4.211374 CCCAACAACGTCTACAAGAAGAAG 59.789 45.833 0.00 0.00 0.00 2.85
3911 4186 4.124238 CCCAACAACGTCTACAAGAAGAA 58.876 43.478 0.00 0.00 0.00 2.52
3912 4187 3.724374 CCCAACAACGTCTACAAGAAGA 58.276 45.455 0.00 0.00 0.00 2.87
3913 4188 2.223377 GCCCAACAACGTCTACAAGAAG 59.777 50.000 0.00 0.00 0.00 2.85
3914 4189 2.215196 GCCCAACAACGTCTACAAGAA 58.785 47.619 0.00 0.00 0.00 2.52
3915 4190 1.541670 GGCCCAACAACGTCTACAAGA 60.542 52.381 0.00 0.00 0.00 3.02
3916 4191 0.872388 GGCCCAACAACGTCTACAAG 59.128 55.000 0.00 0.00 0.00 3.16
3917 4192 0.470766 AGGCCCAACAACGTCTACAA 59.529 50.000 0.00 0.00 0.00 2.41
3918 4193 0.034337 GAGGCCCAACAACGTCTACA 59.966 55.000 0.00 0.00 0.00 2.74
3919 4194 0.672711 GGAGGCCCAACAACGTCTAC 60.673 60.000 0.00 0.00 0.00 2.59
3920 4195 1.122632 TGGAGGCCCAACAACGTCTA 61.123 55.000 0.00 0.00 40.09 2.59
3921 4196 1.990160 TTGGAGGCCCAACAACGTCT 61.990 55.000 0.00 0.00 46.94 4.18
3922 4197 1.515521 CTTGGAGGCCCAACAACGTC 61.516 60.000 0.00 0.00 46.94 4.34
3923 4198 1.528309 CTTGGAGGCCCAACAACGT 60.528 57.895 0.00 0.00 46.94 3.99
3924 4199 1.528309 ACTTGGAGGCCCAACAACG 60.528 57.895 0.00 0.00 46.94 4.10
3925 4200 2.041153 CACTTGGAGGCCCAACAAC 58.959 57.895 0.00 0.00 46.94 3.32
3926 4201 1.832167 GCACTTGGAGGCCCAACAA 60.832 57.895 0.00 1.03 46.94 2.83
3927 4202 2.203480 GCACTTGGAGGCCCAACA 60.203 61.111 0.00 0.00 46.94 3.33
3928 4203 2.203480 TGCACTTGGAGGCCCAAC 60.203 61.111 0.00 0.00 46.94 3.77
3930 4205 2.853542 TCTGCACTTGGAGGCCCA 60.854 61.111 0.00 0.00 41.64 5.36
3931 4206 2.045536 CTCTGCACTTGGAGGCCC 60.046 66.667 0.00 0.00 34.00 5.80
3932 4207 2.045536 CCTCTGCACTTGGAGGCC 60.046 66.667 6.78 0.00 41.92 5.19
3935 4210 1.972872 ACAAACCTCTGCACTTGGAG 58.027 50.000 2.33 0.00 34.56 3.86
3936 4211 2.224523 CCTACAAACCTCTGCACTTGGA 60.225 50.000 2.33 0.00 0.00 3.53
3937 4212 2.154462 CCTACAAACCTCTGCACTTGG 58.846 52.381 0.00 0.00 0.00 3.61
3938 4213 2.808543 GTCCTACAAACCTCTGCACTTG 59.191 50.000 0.00 0.00 0.00 3.16
3939 4214 2.438021 TGTCCTACAAACCTCTGCACTT 59.562 45.455 0.00 0.00 0.00 3.16
3940 4215 2.037772 CTGTCCTACAAACCTCTGCACT 59.962 50.000 0.00 0.00 0.00 4.40
3941 4216 2.224305 ACTGTCCTACAAACCTCTGCAC 60.224 50.000 0.00 0.00 0.00 4.57
3942 4217 2.047061 ACTGTCCTACAAACCTCTGCA 58.953 47.619 0.00 0.00 0.00 4.41
3943 4218 2.841442 ACTGTCCTACAAACCTCTGC 57.159 50.000 0.00 0.00 0.00 4.26
3944 4219 3.258372 TGCTACTGTCCTACAAACCTCTG 59.742 47.826 0.00 0.00 0.00 3.35
3945 4220 3.507411 TGCTACTGTCCTACAAACCTCT 58.493 45.455 0.00 0.00 0.00 3.69
3946 4221 3.955650 TGCTACTGTCCTACAAACCTC 57.044 47.619 0.00 0.00 0.00 3.85
3947 4222 4.699925 TTTGCTACTGTCCTACAAACCT 57.300 40.909 0.00 0.00 0.00 3.50
3948 4223 5.959618 AATTTGCTACTGTCCTACAAACC 57.040 39.130 0.00 0.00 33.46 3.27
3949 4224 6.379386 GGAAATTTGCTACTGTCCTACAAAC 58.621 40.000 1.93 0.00 33.46 2.93
3950 4225 5.475564 GGGAAATTTGCTACTGTCCTACAAA 59.524 40.000 9.70 0.00 34.97 2.83
3951 4226 5.007682 GGGAAATTTGCTACTGTCCTACAA 58.992 41.667 9.70 0.00 0.00 2.41
3952 4227 4.288626 AGGGAAATTTGCTACTGTCCTACA 59.711 41.667 9.70 0.00 0.00 2.74
3953 4228 4.844884 AGGGAAATTTGCTACTGTCCTAC 58.155 43.478 9.70 0.00 0.00 3.18
3954 4229 4.534500 TGAGGGAAATTTGCTACTGTCCTA 59.466 41.667 9.70 0.00 0.00 2.94
3955 4230 3.330701 TGAGGGAAATTTGCTACTGTCCT 59.669 43.478 9.70 0.00 0.00 3.85
3956 4231 3.686016 TGAGGGAAATTTGCTACTGTCC 58.314 45.455 9.70 0.00 0.00 4.02
3957 4232 5.904362 ATTGAGGGAAATTTGCTACTGTC 57.096 39.130 9.70 0.77 0.00 3.51
3958 4233 7.175104 TCTAATTGAGGGAAATTTGCTACTGT 58.825 34.615 9.70 0.00 32.16 3.55
3959 4234 7.630242 TCTAATTGAGGGAAATTTGCTACTG 57.370 36.000 9.70 0.00 32.16 2.74
3960 4235 8.055181 TCATCTAATTGAGGGAAATTTGCTACT 58.945 33.333 9.70 0.00 32.16 2.57
3961 4236 8.131731 GTCATCTAATTGAGGGAAATTTGCTAC 58.868 37.037 9.70 4.95 32.16 3.58
3962 4237 7.285401 GGTCATCTAATTGAGGGAAATTTGCTA 59.715 37.037 9.70 0.00 32.16 3.49
3963 4238 6.097412 GGTCATCTAATTGAGGGAAATTTGCT 59.903 38.462 9.70 0.00 32.16 3.91
3964 4239 6.097412 AGGTCATCTAATTGAGGGAAATTTGC 59.903 38.462 0.22 0.22 32.16 3.68
3965 4240 7.651027 AGGTCATCTAATTGAGGGAAATTTG 57.349 36.000 0.00 0.00 32.16 2.32
3966 4241 9.413734 CTTAGGTCATCTAATTGAGGGAAATTT 57.586 33.333 0.00 0.00 37.33 1.82
3967 4242 8.781951 TCTTAGGTCATCTAATTGAGGGAAATT 58.218 33.333 0.00 0.00 37.33 1.82
3968 4243 8.337118 TCTTAGGTCATCTAATTGAGGGAAAT 57.663 34.615 0.00 0.00 37.33 2.17
3969 4244 7.749377 TCTTAGGTCATCTAATTGAGGGAAA 57.251 36.000 0.00 0.00 37.33 3.13
3970 4245 7.937700 ATCTTAGGTCATCTAATTGAGGGAA 57.062 36.000 0.00 0.00 37.33 3.97
3971 4246 7.937700 AATCTTAGGTCATCTAATTGAGGGA 57.062 36.000 0.00 0.00 37.33 4.20
3979 4254 9.929180 CGGATTGATAAATCTTAGGTCATCTAA 57.071 33.333 2.71 0.00 36.58 2.10
3980 4255 9.090103 ACGGATTGATAAATCTTAGGTCATCTA 57.910 33.333 2.71 0.00 0.00 1.98
3981 4256 7.875041 CACGGATTGATAAATCTTAGGTCATCT 59.125 37.037 2.71 0.00 0.00 2.90
3982 4257 7.118390 CCACGGATTGATAAATCTTAGGTCATC 59.882 40.741 2.71 0.00 0.00 2.92
3983 4258 6.936900 CCACGGATTGATAAATCTTAGGTCAT 59.063 38.462 2.71 0.00 0.00 3.06
3984 4259 6.288294 CCACGGATTGATAAATCTTAGGTCA 58.712 40.000 2.71 0.00 0.00 4.02
3985 4260 5.701290 CCCACGGATTGATAAATCTTAGGTC 59.299 44.000 2.71 0.00 0.00 3.85
3986 4261 5.368523 TCCCACGGATTGATAAATCTTAGGT 59.631 40.000 2.71 0.00 0.00 3.08
3987 4262 5.865085 TCCCACGGATTGATAAATCTTAGG 58.135 41.667 2.71 2.67 0.00 2.69
3988 4263 5.934625 CCTCCCACGGATTGATAAATCTTAG 59.065 44.000 2.71 0.00 0.00 2.18
3989 4264 5.368523 ACCTCCCACGGATTGATAAATCTTA 59.631 40.000 2.71 0.00 0.00 2.10
3990 4265 4.166144 ACCTCCCACGGATTGATAAATCTT 59.834 41.667 2.71 0.00 0.00 2.40
3991 4266 3.716872 ACCTCCCACGGATTGATAAATCT 59.283 43.478 2.71 0.00 0.00 2.40
3992 4267 3.815401 CACCTCCCACGGATTGATAAATC 59.185 47.826 0.00 0.00 0.00 2.17
3993 4268 3.202151 ACACCTCCCACGGATTGATAAAT 59.798 43.478 0.00 0.00 0.00 1.40
3994 4269 2.574369 ACACCTCCCACGGATTGATAAA 59.426 45.455 0.00 0.00 0.00 1.40
3995 4270 2.193127 ACACCTCCCACGGATTGATAA 58.807 47.619 0.00 0.00 0.00 1.75
3996 4271 1.874129 ACACCTCCCACGGATTGATA 58.126 50.000 0.00 0.00 0.00 2.15
3997 4272 1.762957 CTACACCTCCCACGGATTGAT 59.237 52.381 0.00 0.00 0.00 2.57
3998 4273 1.191535 CTACACCTCCCACGGATTGA 58.808 55.000 0.00 0.00 0.00 2.57
3999 4274 0.178068 CCTACACCTCCCACGGATTG 59.822 60.000 0.00 0.00 0.00 2.67
4000 4275 0.042131 TCCTACACCTCCCACGGATT 59.958 55.000 0.00 0.00 0.00 3.01
4001 4276 0.264955 ATCCTACACCTCCCACGGAT 59.735 55.000 0.00 0.00 0.00 4.18
4002 4277 0.686441 CATCCTACACCTCCCACGGA 60.686 60.000 0.00 0.00 0.00 4.69
4003 4278 0.686441 TCATCCTACACCTCCCACGG 60.686 60.000 0.00 0.00 0.00 4.94
4004 4279 1.137086 CTTCATCCTACACCTCCCACG 59.863 57.143 0.00 0.00 0.00 4.94
4005 4280 2.467880 TCTTCATCCTACACCTCCCAC 58.532 52.381 0.00 0.00 0.00 4.61
4006 4281 2.940514 TCTTCATCCTACACCTCCCA 57.059 50.000 0.00 0.00 0.00 4.37
4007 4282 2.370189 CCATCTTCATCCTACACCTCCC 59.630 54.545 0.00 0.00 0.00 4.30
4008 4283 3.041946 ACCATCTTCATCCTACACCTCC 58.958 50.000 0.00 0.00 0.00 4.30
4009 4284 3.964031 AGACCATCTTCATCCTACACCTC 59.036 47.826 0.00 0.00 0.00 3.85
4010 4285 3.964031 GAGACCATCTTCATCCTACACCT 59.036 47.826 0.00 0.00 0.00 4.00
4011 4286 3.964031 AGAGACCATCTTCATCCTACACC 59.036 47.826 0.00 0.00 32.99 4.16
4012 4287 4.892934 AGAGAGACCATCTTCATCCTACAC 59.107 45.833 0.00 0.00 38.84 2.90
4013 4288 5.136068 AGAGAGACCATCTTCATCCTACA 57.864 43.478 0.00 0.00 38.84 2.74
4014 4289 5.136828 TGAGAGAGACCATCTTCATCCTAC 58.863 45.833 0.00 0.00 38.84 3.18
4015 4290 5.394562 TGAGAGAGACCATCTTCATCCTA 57.605 43.478 0.00 0.00 38.84 2.94
4016 4291 4.262891 TGAGAGAGACCATCTTCATCCT 57.737 45.455 0.00 0.00 38.84 3.24
4017 4292 4.740334 GCTTGAGAGAGACCATCTTCATCC 60.740 50.000 0.00 0.00 38.84 3.51
4018 4293 4.141981 TGCTTGAGAGAGACCATCTTCATC 60.142 45.833 0.00 0.00 38.84 2.92
4019 4294 3.773667 TGCTTGAGAGAGACCATCTTCAT 59.226 43.478 0.00 0.00 38.84 2.57
4020 4295 3.168292 TGCTTGAGAGAGACCATCTTCA 58.832 45.455 0.00 0.00 38.84 3.02
4021 4296 3.883830 TGCTTGAGAGAGACCATCTTC 57.116 47.619 0.00 0.00 38.84 2.87
4022 4297 3.307339 GGTTGCTTGAGAGAGACCATCTT 60.307 47.826 0.00 0.00 38.84 2.40
4023 4298 2.235898 GGTTGCTTGAGAGAGACCATCT 59.764 50.000 0.00 0.00 42.61 2.90
4024 4299 2.626840 GGTTGCTTGAGAGAGACCATC 58.373 52.381 0.00 0.00 32.64 3.51
4025 4300 1.280421 GGGTTGCTTGAGAGAGACCAT 59.720 52.381 0.00 0.00 33.49 3.55
4026 4301 0.687354 GGGTTGCTTGAGAGAGACCA 59.313 55.000 0.00 0.00 33.49 4.02
4027 4302 0.980423 AGGGTTGCTTGAGAGAGACC 59.020 55.000 0.00 0.00 0.00 3.85
4028 4303 1.943507 GCAGGGTTGCTTGAGAGAGAC 60.944 57.143 0.00 0.00 46.95 3.36
4029 4304 0.322975 GCAGGGTTGCTTGAGAGAGA 59.677 55.000 0.00 0.00 46.95 3.10
4030 4305 2.851798 GCAGGGTTGCTTGAGAGAG 58.148 57.895 0.00 0.00 46.95 3.20
4040 4315 3.742433 TGTTATTTGGTTGCAGGGTTG 57.258 42.857 0.00 0.00 0.00 3.77
4041 4316 4.407296 TCTTTGTTATTTGGTTGCAGGGTT 59.593 37.500 0.00 0.00 0.00 4.11
4042 4317 3.964031 TCTTTGTTATTTGGTTGCAGGGT 59.036 39.130 0.00 0.00 0.00 4.34
4043 4318 4.039124 ACTCTTTGTTATTTGGTTGCAGGG 59.961 41.667 0.00 0.00 0.00 4.45
4044 4319 5.010012 AGACTCTTTGTTATTTGGTTGCAGG 59.990 40.000 0.00 0.00 0.00 4.85
4045 4320 6.016777 AGAGACTCTTTGTTATTTGGTTGCAG 60.017 38.462 0.00 0.00 0.00 4.41
4046 4321 5.827797 AGAGACTCTTTGTTATTTGGTTGCA 59.172 36.000 0.00 0.00 0.00 4.08
4047 4322 6.319141 AGAGACTCTTTGTTATTTGGTTGC 57.681 37.500 0.00 0.00 0.00 4.17
4048 4323 7.645340 CACAAGAGACTCTTTGTTATTTGGTTG 59.355 37.037 15.24 2.96 33.78 3.77
4049 4324 7.339466 ACACAAGAGACTCTTTGTTATTTGGTT 59.661 33.333 15.24 0.00 33.78 3.67
4050 4325 6.828785 ACACAAGAGACTCTTTGTTATTTGGT 59.171 34.615 15.24 4.31 33.78 3.67
4051 4326 7.264373 ACACAAGAGACTCTTTGTTATTTGG 57.736 36.000 15.24 3.69 33.78 3.28
4052 4327 7.355778 GGACACAAGAGACTCTTTGTTATTTG 58.644 38.462 22.64 12.21 33.78 2.32
4053 4328 6.486993 GGGACACAAGAGACTCTTTGTTATTT 59.513 38.462 22.64 9.20 33.78 1.40
4054 4329 5.998363 GGGACACAAGAGACTCTTTGTTATT 59.002 40.000 22.64 10.86 33.78 1.40
4055 4330 5.513267 GGGGACACAAGAGACTCTTTGTTAT 60.513 44.000 22.64 13.25 33.78 1.89
4056 4331 4.202326 GGGGACACAAGAGACTCTTTGTTA 60.202 45.833 22.64 0.00 33.78 2.41
4057 4332 3.433740 GGGGACACAAGAGACTCTTTGTT 60.434 47.826 22.64 10.17 33.78 2.83
4058 4333 2.104963 GGGGACACAAGAGACTCTTTGT 59.895 50.000 22.26 22.26 33.78 2.83
4059 4334 2.104792 TGGGGACACAAGAGACTCTTTG 59.895 50.000 15.24 17.09 31.62 2.77
4060 4335 2.408565 TGGGGACACAAGAGACTCTTT 58.591 47.619 15.24 1.05 31.62 2.52
4061 4336 2.103153 TGGGGACACAAGAGACTCTT 57.897 50.000 12.12 12.12 33.63 2.85
4062 4337 1.694696 GTTGGGGACACAAGAGACTCT 59.305 52.381 0.00 0.00 42.67 3.24
4063 4338 1.416401 TGTTGGGGACACAAGAGACTC 59.584 52.381 0.00 0.00 42.67 3.36
4064 4339 1.507140 TGTTGGGGACACAAGAGACT 58.493 50.000 0.00 0.00 42.67 3.24
4073 4348 1.149986 TATTGGGTGTGTTGGGGACA 58.850 50.000 0.00 0.00 39.83 4.02
4074 4349 1.202952 TGTATTGGGTGTGTTGGGGAC 60.203 52.381 0.00 0.00 0.00 4.46
4075 4350 1.149986 TGTATTGGGTGTGTTGGGGA 58.850 50.000 0.00 0.00 0.00 4.81
4076 4351 2.002505 TTGTATTGGGTGTGTTGGGG 57.997 50.000 0.00 0.00 0.00 4.96
4077 4352 2.233431 CCATTGTATTGGGTGTGTTGGG 59.767 50.000 0.00 0.00 32.80 4.12
4078 4353 2.896685 ACCATTGTATTGGGTGTGTTGG 59.103 45.455 0.00 0.00 41.35 3.77
4079 4354 5.713792 TTACCATTGTATTGGGTGTGTTG 57.286 39.130 0.00 0.00 41.35 3.33
4080 4355 6.926630 ATTTACCATTGTATTGGGTGTGTT 57.073 33.333 0.00 0.00 41.35 3.32
4081 4356 6.268847 ACAATTTACCATTGTATTGGGTGTGT 59.731 34.615 0.00 0.00 40.12 3.72
4082 4357 6.696411 ACAATTTACCATTGTATTGGGTGTG 58.304 36.000 0.00 0.00 40.12 3.82
4083 4358 6.926630 ACAATTTACCATTGTATTGGGTGT 57.073 33.333 0.00 0.00 40.12 4.16
4088 4363 9.677567 GCACCTATACAATTTACCATTGTATTG 57.322 33.333 20.03 17.89 46.90 1.90
4089 4364 9.415008 TGCACCTATACAATTTACCATTGTATT 57.585 29.630 20.03 5.46 46.90 1.89
4091 4366 8.050325 AGTGCACCTATACAATTTACCATTGTA 58.950 33.333 14.63 9.30 45.16 2.41
4092 4367 6.889722 AGTGCACCTATACAATTTACCATTGT 59.110 34.615 14.63 5.58 43.74 2.71
4093 4368 7.333528 AGTGCACCTATACAATTTACCATTG 57.666 36.000 14.63 0.00 35.29 2.82
4094 4369 8.677148 CTAGTGCACCTATACAATTTACCATT 57.323 34.615 14.63 0.00 0.00 3.16



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.