Multiple sequence alignment - TraesCS3D01G341000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G341000 chr3D 100.000 2321 0 0 1 2321 454499735 454502055 0.000000e+00 4287.0
1 TraesCS3D01G341000 chr3A 89.724 1664 118 22 515 2140 596501638 596503286 0.000000e+00 2076.0
2 TraesCS3D01G341000 chr3A 85.475 179 26 0 2143 2321 707625681 707625859 1.090000e-43 187.0
3 TraesCS3D01G341000 chr3A 97.196 107 3 0 1 107 596501378 596501484 5.090000e-42 182.0
4 TraesCS3D01G341000 chr3A 94.118 102 6 0 93 194 596501539 596501640 3.090000e-34 156.0
5 TraesCS3D01G341000 chr3B 89.155 1254 77 21 515 1758 597047915 597049119 0.000000e+00 1507.0
6 TraesCS3D01G341000 chr3B 93.578 327 19 2 192 517 447290370 447290045 9.640000e-134 486.0
7 TraesCS3D01G341000 chr3B 93.299 194 13 0 1 194 597047724 597047917 1.050000e-73 287.0
8 TraesCS3D01G341000 chr3B 96.078 51 2 0 1778 1828 597049162 597049212 1.480000e-12 84.2
9 TraesCS3D01G341000 chr7D 94.495 327 16 2 194 519 126890003 126890328 9.570000e-139 503.0
10 TraesCS3D01G341000 chr7D 86.034 179 25 0 2143 2321 632121093 632120915 2.350000e-45 193.0
11 TraesCS3D01G341000 chr7D 85.475 179 26 0 2143 2321 101779043 101778865 1.090000e-43 187.0
12 TraesCS3D01G341000 chr5A 93.921 329 18 2 192 519 374886162 374885835 1.600000e-136 496.0
13 TraesCS3D01G341000 chr5A 93.884 327 18 2 192 517 228892577 228892252 2.070000e-135 492.0
14 TraesCS3D01G341000 chr5A 85.955 178 24 1 2143 2320 608399730 608399906 3.040000e-44 189.0
15 TraesCS3D01G341000 chr4B 93.884 327 18 2 192 517 37726675 37726350 2.070000e-135 492.0
16 TraesCS3D01G341000 chr4B 93.030 330 23 0 192 521 373785264 373784935 1.250000e-132 483.0
17 TraesCS3D01G341000 chr4B 82.979 188 30 2 1961 2148 630297791 630297976 3.970000e-38 169.0
18 TraesCS3D01G341000 chr4B 82.447 188 31 2 1961 2148 630310747 630310932 1.850000e-36 163.0
19 TraesCS3D01G341000 chr2A 94.118 323 17 2 194 515 493336592 493336271 7.450000e-135 490.0
20 TraesCS3D01G341000 chr7B 93.353 331 19 3 192 521 680209670 680209998 9.640000e-134 486.0
21 TraesCS3D01G341000 chr6A 93.051 331 21 2 190 519 474329070 474328741 1.250000e-132 483.0
22 TraesCS3D01G341000 chr5D 86.592 179 24 0 2143 2321 505548508 505548330 5.060000e-47 198.0
23 TraesCS3D01G341000 chr6D 86.517 178 21 2 2143 2320 304688799 304688625 2.350000e-45 193.0
24 TraesCS3D01G341000 chr2B 85.475 179 26 0 2143 2321 477152159 477152337 1.090000e-43 187.0
25 TraesCS3D01G341000 chr1D 85.475 179 26 0 2143 2321 293591181 293591359 1.090000e-43 187.0
26 TraesCS3D01G341000 chr4D 82.759 203 32 2 2121 2321 107712738 107712537 6.590000e-41 178.0
27 TraesCS3D01G341000 chr2D 78.421 190 34 6 1961 2147 542197840 542198025 1.460000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G341000 chr3D 454499735 454502055 2320 False 4287.000000 4287 100.000000 1 2321 1 chr3D.!!$F1 2320
1 TraesCS3D01G341000 chr3A 596501378 596503286 1908 False 804.666667 2076 93.679333 1 2140 3 chr3A.!!$F2 2139
2 TraesCS3D01G341000 chr3B 597047724 597049212 1488 False 626.066667 1507 92.844000 1 1828 3 chr3B.!!$F1 1827

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
432 502 0.031449 CTCGAGAGGATCCCGCTTTC 59.969 60.0 6.58 0.0 32.83 2.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2158 2297 0.030369 CCGCCGATAAAGAGTAGCGT 59.97 55.0 0.0 0.0 41.87 5.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
107 108 6.479001 CACGTTACTGGAAGAAGAAGAAGAAA 59.521 38.462 0.00 0.00 37.43 2.52
108 109 6.702282 ACGTTACTGGAAGAAGAAGAAGAAAG 59.298 38.462 0.00 0.00 37.43 2.62
109 110 6.346999 CGTTACTGGAAGAAGAAGAAGAAAGC 60.347 42.308 0.00 0.00 37.43 3.51
155 225 5.316327 TCCTACTATGACGATGATGATGC 57.684 43.478 0.00 0.00 0.00 3.91
170 240 8.743099 CGATGATGATGCAATATAAAATCATGC 58.257 33.333 10.18 0.21 39.31 4.06
196 266 2.659428 CCTCTGGGCAAAGAATAAGGG 58.341 52.381 0.00 0.00 0.00 3.95
197 267 2.027385 CTCTGGGCAAAGAATAAGGGC 58.973 52.381 0.00 0.00 0.00 5.19
198 268 1.357420 TCTGGGCAAAGAATAAGGGCA 59.643 47.619 0.00 0.00 0.00 5.36
199 269 2.024080 TCTGGGCAAAGAATAAGGGCAT 60.024 45.455 0.00 0.00 0.00 4.40
200 270 2.101917 CTGGGCAAAGAATAAGGGCATG 59.898 50.000 0.00 0.00 0.00 4.06
201 271 2.110578 GGGCAAAGAATAAGGGCATGT 58.889 47.619 0.00 0.00 0.00 3.21
202 272 3.295973 GGGCAAAGAATAAGGGCATGTA 58.704 45.455 0.00 0.00 0.00 2.29
203 273 3.068165 GGGCAAAGAATAAGGGCATGTAC 59.932 47.826 0.00 0.00 0.00 2.90
204 274 3.699038 GGCAAAGAATAAGGGCATGTACA 59.301 43.478 0.00 0.00 0.00 2.90
205 275 4.159506 GGCAAAGAATAAGGGCATGTACAA 59.840 41.667 0.00 0.00 0.00 2.41
206 276 5.163416 GGCAAAGAATAAGGGCATGTACAAT 60.163 40.000 0.00 0.00 0.00 2.71
207 277 5.750067 GCAAAGAATAAGGGCATGTACAATG 59.250 40.000 0.00 0.12 0.00 2.82
208 278 6.405731 GCAAAGAATAAGGGCATGTACAATGA 60.406 38.462 0.00 0.00 0.00 2.57
209 279 7.685155 GCAAAGAATAAGGGCATGTACAATGAT 60.685 37.037 0.00 0.00 0.00 2.45
210 280 6.889301 AGAATAAGGGCATGTACAATGATG 57.111 37.500 0.00 0.00 0.00 3.07
211 281 5.771666 AGAATAAGGGCATGTACAATGATGG 59.228 40.000 0.00 0.00 0.00 3.51
212 282 1.696063 AGGGCATGTACAATGATGGC 58.304 50.000 11.25 11.25 42.82 4.40
213 283 1.063792 AGGGCATGTACAATGATGGCA 60.064 47.619 18.87 0.00 44.77 4.92
214 284 1.965643 GGGCATGTACAATGATGGCAT 59.034 47.619 18.87 0.00 44.77 4.40
215 285 3.156293 GGGCATGTACAATGATGGCATA 58.844 45.455 18.87 0.00 44.77 3.14
216 286 3.765511 GGGCATGTACAATGATGGCATAT 59.234 43.478 18.87 0.00 44.77 1.78
217 287 4.381185 GGGCATGTACAATGATGGCATATG 60.381 45.833 18.87 2.78 44.77 1.78
218 288 4.381185 GGCATGTACAATGATGGCATATGG 60.381 45.833 14.01 0.00 43.00 2.74
219 289 4.460034 GCATGTACAATGATGGCATATGGA 59.540 41.667 0.00 0.00 33.44 3.41
220 290 5.126545 GCATGTACAATGATGGCATATGGAT 59.873 40.000 0.00 0.00 33.44 3.41
221 291 6.319405 GCATGTACAATGATGGCATATGGATA 59.681 38.462 0.00 0.00 33.44 2.59
222 292 7.680350 GCATGTACAATGATGGCATATGGATAC 60.680 40.741 0.00 2.02 33.44 2.24
223 293 6.777782 TGTACAATGATGGCATATGGATACA 58.222 36.000 0.00 4.71 43.07 2.29
224 294 6.880529 TGTACAATGATGGCATATGGATACAG 59.119 38.462 0.00 0.00 42.37 2.74
225 295 6.130692 ACAATGATGGCATATGGATACAGA 57.869 37.500 0.00 0.00 42.37 3.41
235 305 1.818419 TGGATACAGATGCCCCATGA 58.182 50.000 0.00 0.00 46.17 3.07
236 306 1.421268 TGGATACAGATGCCCCATGAC 59.579 52.381 0.00 0.00 46.17 3.06
237 307 1.421268 GGATACAGATGCCCCATGACA 59.579 52.381 0.00 0.00 0.00 3.58
238 308 2.158623 GGATACAGATGCCCCATGACAA 60.159 50.000 0.00 0.00 0.00 3.18
239 309 3.554934 GATACAGATGCCCCATGACAAA 58.445 45.455 0.00 0.00 0.00 2.83
240 310 2.307496 ACAGATGCCCCATGACAAAA 57.693 45.000 0.00 0.00 0.00 2.44
241 311 2.607499 ACAGATGCCCCATGACAAAAA 58.393 42.857 0.00 0.00 0.00 1.94
242 312 2.564062 ACAGATGCCCCATGACAAAAAG 59.436 45.455 0.00 0.00 0.00 2.27
243 313 2.564062 CAGATGCCCCATGACAAAAAGT 59.436 45.455 0.00 0.00 0.00 2.66
244 314 3.763360 CAGATGCCCCATGACAAAAAGTA 59.237 43.478 0.00 0.00 0.00 2.24
245 315 4.019174 AGATGCCCCATGACAAAAAGTAG 58.981 43.478 0.00 0.00 0.00 2.57
246 316 3.237268 TGCCCCATGACAAAAAGTAGT 57.763 42.857 0.00 0.00 0.00 2.73
247 317 3.571590 TGCCCCATGACAAAAAGTAGTT 58.428 40.909 0.00 0.00 0.00 2.24
248 318 3.964031 TGCCCCATGACAAAAAGTAGTTT 59.036 39.130 0.00 0.00 0.00 2.66
249 319 4.202202 TGCCCCATGACAAAAAGTAGTTTG 60.202 41.667 0.00 0.00 42.93 2.93
250 320 4.038642 GCCCCATGACAAAAAGTAGTTTGA 59.961 41.667 4.76 0.00 40.29 2.69
251 321 5.772521 CCCCATGACAAAAAGTAGTTTGAG 58.227 41.667 4.76 0.00 40.29 3.02
252 322 5.278957 CCCCATGACAAAAAGTAGTTTGAGG 60.279 44.000 4.76 1.92 40.29 3.86
253 323 5.222631 CCATGACAAAAAGTAGTTTGAGGC 58.777 41.667 4.76 0.00 40.29 4.70
254 324 5.221224 CCATGACAAAAAGTAGTTTGAGGCA 60.221 40.000 6.11 6.11 40.29 4.75
255 325 6.449698 CATGACAAAAAGTAGTTTGAGGCAT 58.550 36.000 9.44 9.44 40.29 4.40
256 326 6.072112 TGACAAAAAGTAGTTTGAGGCATC 57.928 37.500 4.76 0.00 40.29 3.91
257 327 5.827797 TGACAAAAAGTAGTTTGAGGCATCT 59.172 36.000 0.00 0.00 40.29 2.90
258 328 6.995686 TGACAAAAAGTAGTTTGAGGCATCTA 59.004 34.615 0.00 0.00 40.29 1.98
259 329 7.041372 TGACAAAAAGTAGTTTGAGGCATCTAC 60.041 37.037 0.00 0.00 40.29 2.59
260 330 6.770785 ACAAAAAGTAGTTTGAGGCATCTACA 59.229 34.615 0.00 0.00 40.29 2.74
261 331 7.448469 ACAAAAAGTAGTTTGAGGCATCTACAT 59.552 33.333 0.00 0.00 40.29 2.29
262 332 8.299570 CAAAAAGTAGTTTGAGGCATCTACATT 58.700 33.333 0.00 0.00 40.29 2.71
263 333 8.409358 AAAAGTAGTTTGAGGCATCTACATTT 57.591 30.769 0.00 0.00 36.30 2.32
264 334 9.515226 AAAAGTAGTTTGAGGCATCTACATTTA 57.485 29.630 0.00 0.00 34.70 1.40
265 335 9.686683 AAAGTAGTTTGAGGCATCTACATTTAT 57.313 29.630 0.00 0.00 36.30 1.40
266 336 9.686683 AAGTAGTTTGAGGCATCTACATTTATT 57.313 29.630 0.00 0.00 36.30 1.40
267 337 9.686683 AGTAGTTTGAGGCATCTACATTTATTT 57.313 29.630 0.00 0.00 36.30 1.40
288 358 5.376854 TTTTTCTCCTCAATGCAAGCTAC 57.623 39.130 0.00 0.00 0.00 3.58
289 359 2.698855 TCTCCTCAATGCAAGCTACC 57.301 50.000 0.00 0.00 0.00 3.18
290 360 1.908619 TCTCCTCAATGCAAGCTACCA 59.091 47.619 0.00 0.00 0.00 3.25
291 361 2.507058 TCTCCTCAATGCAAGCTACCAT 59.493 45.455 0.00 0.00 0.00 3.55
292 362 3.054139 TCTCCTCAATGCAAGCTACCATT 60.054 43.478 6.06 6.06 32.20 3.16
293 363 4.164030 TCTCCTCAATGCAAGCTACCATTA 59.836 41.667 10.40 0.00 30.96 1.90
294 364 4.454678 TCCTCAATGCAAGCTACCATTAG 58.545 43.478 10.40 8.83 30.96 1.73
295 365 4.080356 TCCTCAATGCAAGCTACCATTAGT 60.080 41.667 10.40 0.00 30.96 2.24
296 366 4.036027 CCTCAATGCAAGCTACCATTAGTG 59.964 45.833 10.40 2.27 30.96 2.74
309 379 4.437682 CCATTAGTGGGCCTCATTAAGA 57.562 45.455 4.53 0.00 42.11 2.10
310 380 4.792068 CCATTAGTGGGCCTCATTAAGAA 58.208 43.478 4.53 0.00 42.11 2.52
311 381 5.200483 CCATTAGTGGGCCTCATTAAGAAA 58.800 41.667 4.53 0.00 42.11 2.52
312 382 5.835280 CCATTAGTGGGCCTCATTAAGAAAT 59.165 40.000 4.53 0.00 42.11 2.17
313 383 7.004086 CCATTAGTGGGCCTCATTAAGAAATA 58.996 38.462 4.53 0.00 42.11 1.40
314 384 7.175641 CCATTAGTGGGCCTCATTAAGAAATAG 59.824 40.741 4.53 0.00 42.11 1.73
315 385 5.975988 AGTGGGCCTCATTAAGAAATAGA 57.024 39.130 4.53 0.00 0.00 1.98
316 386 6.327386 AGTGGGCCTCATTAAGAAATAGAA 57.673 37.500 4.53 0.00 0.00 2.10
317 387 6.731467 AGTGGGCCTCATTAAGAAATAGAAA 58.269 36.000 4.53 0.00 0.00 2.52
318 388 7.182060 AGTGGGCCTCATTAAGAAATAGAAAA 58.818 34.615 4.53 0.00 0.00 2.29
319 389 7.841222 AGTGGGCCTCATTAAGAAATAGAAAAT 59.159 33.333 4.53 0.00 0.00 1.82
320 390 9.131791 GTGGGCCTCATTAAGAAATAGAAAATA 57.868 33.333 4.53 0.00 0.00 1.40
321 391 9.707957 TGGGCCTCATTAAGAAATAGAAAATAA 57.292 29.630 4.53 0.00 0.00 1.40
343 413 9.672673 AATAAAGACTTTAGTACACATGCATCT 57.327 29.630 12.93 0.00 0.00 2.90
344 414 7.602517 AAAGACTTTAGTACACATGCATCTC 57.397 36.000 0.00 0.00 0.00 2.75
345 415 6.537453 AGACTTTAGTACACATGCATCTCT 57.463 37.500 0.00 0.00 0.00 3.10
346 416 7.646548 AGACTTTAGTACACATGCATCTCTA 57.353 36.000 0.00 0.00 0.00 2.43
347 417 8.243961 AGACTTTAGTACACATGCATCTCTAT 57.756 34.615 0.00 0.00 0.00 1.98
348 418 8.700051 AGACTTTAGTACACATGCATCTCTATT 58.300 33.333 0.00 0.00 0.00 1.73
349 419 9.319143 GACTTTAGTACACATGCATCTCTATTT 57.681 33.333 0.00 0.00 0.00 1.40
350 420 9.672673 ACTTTAGTACACATGCATCTCTATTTT 57.327 29.630 0.00 0.00 0.00 1.82
353 423 9.665719 TTAGTACACATGCATCTCTATTTTTCA 57.334 29.630 0.00 0.00 0.00 2.69
354 424 7.978982 AGTACACATGCATCTCTATTTTTCAC 58.021 34.615 0.00 0.00 0.00 3.18
355 425 7.826252 AGTACACATGCATCTCTATTTTTCACT 59.174 33.333 0.00 0.00 0.00 3.41
356 426 7.081526 ACACATGCATCTCTATTTTTCACTC 57.918 36.000 0.00 0.00 0.00 3.51
357 427 6.094603 ACACATGCATCTCTATTTTTCACTCC 59.905 38.462 0.00 0.00 0.00 3.85
358 428 6.094464 CACATGCATCTCTATTTTTCACTCCA 59.906 38.462 0.00 0.00 0.00 3.86
359 429 6.660521 ACATGCATCTCTATTTTTCACTCCAA 59.339 34.615 0.00 0.00 0.00 3.53
360 430 6.500684 TGCATCTCTATTTTTCACTCCAAC 57.499 37.500 0.00 0.00 0.00 3.77
361 431 5.415701 TGCATCTCTATTTTTCACTCCAACC 59.584 40.000 0.00 0.00 0.00 3.77
362 432 5.649831 GCATCTCTATTTTTCACTCCAACCT 59.350 40.000 0.00 0.00 0.00 3.50
363 433 6.151817 GCATCTCTATTTTTCACTCCAACCTT 59.848 38.462 0.00 0.00 0.00 3.50
364 434 7.309438 GCATCTCTATTTTTCACTCCAACCTTT 60.309 37.037 0.00 0.00 0.00 3.11
365 435 8.579863 CATCTCTATTTTTCACTCCAACCTTTT 58.420 33.333 0.00 0.00 0.00 2.27
366 436 8.166422 TCTCTATTTTTCACTCCAACCTTTTC 57.834 34.615 0.00 0.00 0.00 2.29
367 437 7.777910 TCTCTATTTTTCACTCCAACCTTTTCA 59.222 33.333 0.00 0.00 0.00 2.69
368 438 7.940850 TCTATTTTTCACTCCAACCTTTTCAG 58.059 34.615 0.00 0.00 0.00 3.02
369 439 4.385358 TTTTCACTCCAACCTTTTCAGC 57.615 40.909 0.00 0.00 0.00 4.26
370 440 3.297134 TTCACTCCAACCTTTTCAGCT 57.703 42.857 0.00 0.00 0.00 4.24
371 441 3.297134 TCACTCCAACCTTTTCAGCTT 57.703 42.857 0.00 0.00 0.00 3.74
372 442 3.631250 TCACTCCAACCTTTTCAGCTTT 58.369 40.909 0.00 0.00 0.00 3.51
373 443 4.023291 TCACTCCAACCTTTTCAGCTTTT 58.977 39.130 0.00 0.00 0.00 2.27
374 444 4.114794 CACTCCAACCTTTTCAGCTTTTG 58.885 43.478 0.00 0.00 0.00 2.44
375 445 4.023291 ACTCCAACCTTTTCAGCTTTTGA 58.977 39.130 0.00 0.00 0.00 2.69
376 446 4.651045 ACTCCAACCTTTTCAGCTTTTGAT 59.349 37.500 0.00 0.00 35.27 2.57
377 447 5.200368 TCCAACCTTTTCAGCTTTTGATC 57.800 39.130 0.00 0.00 35.27 2.92
378 448 4.039124 TCCAACCTTTTCAGCTTTTGATCC 59.961 41.667 0.00 0.00 35.27 3.36
379 449 4.309933 CAACCTTTTCAGCTTTTGATCCC 58.690 43.478 0.00 0.00 35.27 3.85
380 450 2.558359 ACCTTTTCAGCTTTTGATCCCG 59.442 45.455 0.00 0.00 35.27 5.14
381 451 2.094545 CCTTTTCAGCTTTTGATCCCGG 60.095 50.000 0.00 0.00 35.27 5.73
382 452 2.577606 TTTCAGCTTTTGATCCCGGA 57.422 45.000 0.73 0.00 35.27 5.14
383 453 1.821216 TTCAGCTTTTGATCCCGGAC 58.179 50.000 0.73 0.00 35.27 4.79
384 454 0.035439 TCAGCTTTTGATCCCGGACC 60.035 55.000 0.73 0.00 0.00 4.46
385 455 0.322456 CAGCTTTTGATCCCGGACCA 60.322 55.000 0.73 0.00 0.00 4.02
386 456 0.322546 AGCTTTTGATCCCGGACCAC 60.323 55.000 0.73 0.00 0.00 4.16
387 457 0.608035 GCTTTTGATCCCGGACCACA 60.608 55.000 0.73 0.00 0.00 4.17
388 458 1.165270 CTTTTGATCCCGGACCACAC 58.835 55.000 0.73 0.00 0.00 3.82
389 459 0.768622 TTTTGATCCCGGACCACACT 59.231 50.000 0.73 0.00 0.00 3.55
390 460 0.768622 TTTGATCCCGGACCACACTT 59.231 50.000 0.73 0.00 0.00 3.16
391 461 0.768622 TTGATCCCGGACCACACTTT 59.231 50.000 0.73 0.00 0.00 2.66
392 462 0.768622 TGATCCCGGACCACACTTTT 59.231 50.000 0.73 0.00 0.00 2.27
393 463 1.271163 TGATCCCGGACCACACTTTTC 60.271 52.381 0.73 0.00 0.00 2.29
394 464 0.037734 ATCCCGGACCACACTTTTCC 59.962 55.000 0.73 0.00 0.00 3.13
395 465 1.057851 TCCCGGACCACACTTTTCCT 61.058 55.000 0.73 0.00 0.00 3.36
396 466 0.605589 CCCGGACCACACTTTTCCTC 60.606 60.000 0.73 0.00 0.00 3.71
397 467 0.396811 CCGGACCACACTTTTCCTCT 59.603 55.000 0.00 0.00 0.00 3.69
398 468 1.608283 CCGGACCACACTTTTCCTCTC 60.608 57.143 0.00 0.00 0.00 3.20
399 469 1.608283 CGGACCACACTTTTCCTCTCC 60.608 57.143 0.00 0.00 0.00 3.71
400 470 1.420138 GGACCACACTTTTCCTCTCCA 59.580 52.381 0.00 0.00 0.00 3.86
401 471 2.158667 GGACCACACTTTTCCTCTCCAA 60.159 50.000 0.00 0.00 0.00 3.53
402 472 3.142174 GACCACACTTTTCCTCTCCAAG 58.858 50.000 0.00 0.00 0.00 3.61
403 473 1.882623 CCACACTTTTCCTCTCCAAGC 59.117 52.381 0.00 0.00 0.00 4.01
404 474 2.575532 CACACTTTTCCTCTCCAAGCA 58.424 47.619 0.00 0.00 0.00 3.91
405 475 2.291741 CACACTTTTCCTCTCCAAGCAC 59.708 50.000 0.00 0.00 0.00 4.40
406 476 1.882623 CACTTTTCCTCTCCAAGCACC 59.117 52.381 0.00 0.00 0.00 5.01
407 477 1.777272 ACTTTTCCTCTCCAAGCACCT 59.223 47.619 0.00 0.00 0.00 4.00
408 478 2.157738 CTTTTCCTCTCCAAGCACCTG 58.842 52.381 0.00 0.00 0.00 4.00
409 479 0.250901 TTTCCTCTCCAAGCACCTGC 60.251 55.000 0.00 0.00 42.49 4.85
410 480 2.045536 CCTCTCCAAGCACCTGCC 60.046 66.667 0.00 0.00 43.38 4.85
411 481 2.600729 CCTCTCCAAGCACCTGCCT 61.601 63.158 0.00 0.00 43.38 4.75
412 482 1.078567 CTCTCCAAGCACCTGCCTC 60.079 63.158 0.00 0.00 43.38 4.70
413 483 2.045536 CTCCAAGCACCTGCCTCC 60.046 66.667 0.00 0.00 43.38 4.30
414 484 2.530151 TCCAAGCACCTGCCTCCT 60.530 61.111 0.00 0.00 43.38 3.69
415 485 2.045536 CCAAGCACCTGCCTCCTC 60.046 66.667 0.00 0.00 43.38 3.71
416 486 2.435586 CAAGCACCTGCCTCCTCG 60.436 66.667 0.00 0.00 43.38 4.63
417 487 2.604686 AAGCACCTGCCTCCTCGA 60.605 61.111 0.00 0.00 43.38 4.04
418 488 2.654079 AAGCACCTGCCTCCTCGAG 61.654 63.158 5.13 5.13 43.38 4.04
419 489 3.071206 GCACCTGCCTCCTCGAGA 61.071 66.667 15.71 0.00 34.31 4.04
420 490 3.074999 GCACCTGCCTCCTCGAGAG 62.075 68.421 15.71 9.35 42.83 3.20
430 500 3.849064 CTCGAGAGGATCCCGCTT 58.151 61.111 6.58 0.00 32.83 4.68
431 501 2.119886 CTCGAGAGGATCCCGCTTT 58.880 57.895 6.58 0.00 32.83 3.51
432 502 0.031449 CTCGAGAGGATCCCGCTTTC 59.969 60.000 6.58 0.00 32.83 2.62
433 503 1.068250 CGAGAGGATCCCGCTTTCC 59.932 63.158 8.55 0.00 32.83 3.13
434 504 1.395826 CGAGAGGATCCCGCTTTCCT 61.396 60.000 8.55 0.00 45.12 3.36
435 505 1.705873 GAGAGGATCCCGCTTTCCTA 58.294 55.000 8.55 0.00 42.48 2.94
436 506 2.252714 GAGAGGATCCCGCTTTCCTAT 58.747 52.381 8.55 0.00 42.48 2.57
437 507 2.232696 GAGAGGATCCCGCTTTCCTATC 59.767 54.545 8.55 5.13 42.48 2.08
438 508 1.276705 GAGGATCCCGCTTTCCTATCC 59.723 57.143 8.55 0.00 42.48 2.59
439 509 0.037232 GGATCCCGCTTTCCTATCCG 60.037 60.000 0.00 0.00 0.00 4.18
440 510 0.966920 GATCCCGCTTTCCTATCCGA 59.033 55.000 0.00 0.00 0.00 4.55
441 511 1.343465 GATCCCGCTTTCCTATCCGAA 59.657 52.381 0.00 0.00 0.00 4.30
442 512 0.462789 TCCCGCTTTCCTATCCGAAC 59.537 55.000 0.00 0.00 0.00 3.95
443 513 0.532196 CCCGCTTTCCTATCCGAACC 60.532 60.000 0.00 0.00 0.00 3.62
444 514 0.464452 CCGCTTTCCTATCCGAACCT 59.536 55.000 0.00 0.00 0.00 3.50
445 515 1.684983 CCGCTTTCCTATCCGAACCTA 59.315 52.381 0.00 0.00 0.00 3.08
446 516 2.545322 CCGCTTTCCTATCCGAACCTAC 60.545 54.545 0.00 0.00 0.00 3.18
447 517 2.361438 CGCTTTCCTATCCGAACCTACT 59.639 50.000 0.00 0.00 0.00 2.57
448 518 3.181478 CGCTTTCCTATCCGAACCTACTT 60.181 47.826 0.00 0.00 0.00 2.24
449 519 4.679905 CGCTTTCCTATCCGAACCTACTTT 60.680 45.833 0.00 0.00 0.00 2.66
450 520 5.450965 CGCTTTCCTATCCGAACCTACTTTA 60.451 44.000 0.00 0.00 0.00 1.85
451 521 5.752472 GCTTTCCTATCCGAACCTACTTTAC 59.248 44.000 0.00 0.00 0.00 2.01
452 522 5.505173 TTCCTATCCGAACCTACTTTACG 57.495 43.478 0.00 0.00 0.00 3.18
453 523 4.526970 TCCTATCCGAACCTACTTTACGT 58.473 43.478 0.00 0.00 0.00 3.57
454 524 4.576463 TCCTATCCGAACCTACTTTACGTC 59.424 45.833 0.00 0.00 0.00 4.34
455 525 4.336433 CCTATCCGAACCTACTTTACGTCA 59.664 45.833 0.00 0.00 0.00 4.35
456 526 4.996788 ATCCGAACCTACTTTACGTCAT 57.003 40.909 0.00 0.00 0.00 3.06
457 527 6.205464 CCTATCCGAACCTACTTTACGTCATA 59.795 42.308 0.00 0.00 0.00 2.15
458 528 6.645790 ATCCGAACCTACTTTACGTCATAT 57.354 37.500 0.00 0.00 0.00 1.78
459 529 6.064846 TCCGAACCTACTTTACGTCATATC 57.935 41.667 0.00 0.00 0.00 1.63
460 530 5.009010 TCCGAACCTACTTTACGTCATATCC 59.991 44.000 0.00 0.00 0.00 2.59
461 531 4.908156 CGAACCTACTTTACGTCATATCCG 59.092 45.833 0.00 0.00 0.00 4.18
462 532 5.277490 CGAACCTACTTTACGTCATATCCGA 60.277 44.000 0.00 0.00 0.00 4.55
463 533 6.567321 CGAACCTACTTTACGTCATATCCGAT 60.567 42.308 0.00 0.00 0.00 4.18
464 534 6.251655 ACCTACTTTACGTCATATCCGATC 57.748 41.667 0.00 0.00 0.00 3.69
465 535 5.182760 ACCTACTTTACGTCATATCCGATCC 59.817 44.000 0.00 0.00 0.00 3.36
466 536 5.415077 CCTACTTTACGTCATATCCGATCCT 59.585 44.000 0.00 0.00 0.00 3.24
467 537 6.596888 CCTACTTTACGTCATATCCGATCCTA 59.403 42.308 0.00 0.00 0.00 2.94
468 538 6.251655 ACTTTACGTCATATCCGATCCTAC 57.748 41.667 0.00 0.00 0.00 3.18
469 539 5.766670 ACTTTACGTCATATCCGATCCTACA 59.233 40.000 0.00 0.00 0.00 2.74
470 540 6.433404 ACTTTACGTCATATCCGATCCTACAT 59.567 38.462 0.00 0.00 0.00 2.29
471 541 4.703645 ACGTCATATCCGATCCTACATG 57.296 45.455 0.00 0.00 0.00 3.21
472 542 3.444034 ACGTCATATCCGATCCTACATGG 59.556 47.826 0.00 0.00 37.10 3.66
473 543 3.735208 CGTCATATCCGATCCTACATGGC 60.735 52.174 0.00 0.00 35.26 4.40
474 544 3.195610 GTCATATCCGATCCTACATGGCA 59.804 47.826 0.00 0.00 35.26 4.92
475 545 4.033009 TCATATCCGATCCTACATGGCAT 58.967 43.478 0.00 0.00 35.26 4.40
476 546 2.775911 ATCCGATCCTACATGGCATG 57.224 50.000 25.31 25.31 35.26 4.06
477 547 0.035317 TCCGATCCTACATGGCATGC 59.965 55.000 26.70 9.90 35.26 4.06
478 548 1.293963 CCGATCCTACATGGCATGCG 61.294 60.000 26.70 19.33 35.26 4.73
479 549 0.319813 CGATCCTACATGGCATGCGA 60.320 55.000 26.70 19.03 35.26 5.10
480 550 1.436600 GATCCTACATGGCATGCGAG 58.563 55.000 26.70 22.01 35.26 5.03
481 551 0.035881 ATCCTACATGGCATGCGAGG 59.964 55.000 30.04 30.04 37.80 4.63
482 552 2.256591 CCTACATGGCATGCGAGGC 61.257 63.158 26.96 0.00 32.09 4.70
492 562 3.002583 TGCGAGGCATCACCCTGA 61.003 61.111 0.00 0.00 40.58 3.86
493 563 2.202987 GCGAGGCATCACCCTGAG 60.203 66.667 0.00 0.00 40.58 3.35
494 564 2.503061 CGAGGCATCACCCTGAGG 59.497 66.667 0.00 0.00 40.58 3.86
500 570 3.319135 CATCACCCTGAGGCTATGC 57.681 57.895 0.00 0.00 36.11 3.14
501 571 0.471191 CATCACCCTGAGGCTATGCA 59.529 55.000 0.00 0.00 36.11 3.96
502 572 1.073444 CATCACCCTGAGGCTATGCAT 59.927 52.381 3.79 3.79 36.11 3.96
503 573 1.216064 TCACCCTGAGGCTATGCATT 58.784 50.000 3.54 0.00 36.11 3.56
504 574 1.134007 TCACCCTGAGGCTATGCATTG 60.134 52.381 3.54 3.55 36.11 2.82
505 575 0.921896 ACCCTGAGGCTATGCATTGT 59.078 50.000 3.54 0.00 36.11 2.71
506 576 2.126882 ACCCTGAGGCTATGCATTGTA 58.873 47.619 3.54 0.00 36.11 2.41
507 577 2.158755 ACCCTGAGGCTATGCATTGTAC 60.159 50.000 3.54 0.42 36.11 2.90
508 578 2.158769 CCCTGAGGCTATGCATTGTACA 60.159 50.000 3.54 4.41 0.00 2.90
509 579 3.497405 CCCTGAGGCTATGCATTGTACAT 60.497 47.826 3.54 0.00 0.00 2.29
510 580 3.501062 CCTGAGGCTATGCATTGTACATG 59.499 47.826 3.54 0.00 0.00 3.21
511 581 2.880268 TGAGGCTATGCATTGTACATGC 59.120 45.455 3.54 17.91 44.76 4.06
512 582 2.227388 GAGGCTATGCATTGTACATGCC 59.773 50.000 20.37 7.92 43.94 4.40
513 583 1.270550 GGCTATGCATTGTACATGCCC 59.729 52.381 20.37 13.59 43.94 5.36
529 599 4.141181 ACATGCCCTAATGTACCATGTCAT 60.141 41.667 6.01 0.00 41.74 3.06
549 619 6.094061 GTCATCTAGTGTGTTCCAGTAACTC 58.906 44.000 0.00 0.00 38.99 3.01
653 723 2.807967 CCGAGTGTGAAAGAAATGCTCA 59.192 45.455 0.00 0.00 0.00 4.26
656 726 4.672413 CGAGTGTGAAAGAAATGCTCAAAC 59.328 41.667 0.00 0.00 0.00 2.93
710 780 1.004610 CCGATGCTATGTGCTTTGTCG 60.005 52.381 0.00 0.00 43.37 4.35
733 803 2.940410 TCACGGTGGAGAACAAAAGTTC 59.060 45.455 8.50 0.28 0.00 3.01
811 881 3.056891 CAGAGAGACTGTGAAACCTCTCC 60.057 52.174 15.74 3.70 45.25 3.71
882 952 3.501349 AGCAGTCTCCTGTTCAGTTCTA 58.499 45.455 0.00 0.00 41.02 2.10
894 964 2.156917 TCAGTTCTACTCGCCGAGAAA 58.843 47.619 22.80 9.04 33.59 2.52
976 1070 4.733850 TGTATCTGAAGAACTACTGTGCG 58.266 43.478 0.00 0.00 0.00 5.34
980 1074 6.694877 ATCTGAAGAACTACTGTGCGTATA 57.305 37.500 0.00 0.00 0.00 1.47
1027 1121 2.072874 ATGCTTGCAGGTGGTGGAGT 62.073 55.000 0.87 0.00 0.00 3.85
1083 1177 2.930040 GTCGATCAAGAAGGCGATCAAA 59.070 45.455 0.00 0.00 38.35 2.69
1124 1221 2.996621 CCTCTGATCCACTCGACAAAAC 59.003 50.000 0.00 0.00 0.00 2.43
1129 1226 1.295792 TCCACTCGACAAAACACAGC 58.704 50.000 0.00 0.00 0.00 4.40
1157 1261 7.498900 TCACTTTCCATACTTTGCAGTATATGG 59.501 37.037 19.10 19.10 43.37 2.74
1359 1463 0.598158 GACGAGCCACACGGTAACAA 60.598 55.000 0.00 0.00 34.93 2.83
1360 1464 0.877213 ACGAGCCACACGGTAACAAC 60.877 55.000 0.00 0.00 34.93 3.32
1457 1561 6.032039 ACCATGGGATATCAGGAGCTATTTA 58.968 40.000 18.09 0.00 0.00 1.40
1477 1581 7.907214 ATTTATACTGCAGATCGGGTAATTC 57.093 36.000 23.35 0.00 0.00 2.17
1528 1632 0.541863 TTCTTCCCTCGCTTGATCCC 59.458 55.000 0.00 0.00 0.00 3.85
1563 1668 1.788886 GTCGTCGTGTTGGGTTAACTC 59.211 52.381 5.42 1.05 40.05 3.01
1578 1683 6.047231 GGGTTAACTCTTCTGTATTGCGTAT 58.953 40.000 5.42 0.00 0.00 3.06
1579 1684 7.147863 TGGGTTAACTCTTCTGTATTGCGTATA 60.148 37.037 7.09 0.00 0.00 1.47
1596 1701 4.260375 GCGTATACTGAACTCATGGCAAAG 60.260 45.833 0.56 0.00 0.00 2.77
1654 1759 8.615878 TTTCACGGGGAATATATGTATGAAAG 57.384 34.615 0.00 0.00 34.91 2.62
1677 1782 8.783660 AAGGAGTGATATAACTGTCAGGATTA 57.216 34.615 4.53 0.00 0.00 1.75
1689 1794 6.459923 ACTGTCAGGATTAGTTTCAGACTTC 58.540 40.000 4.53 0.00 39.86 3.01
1785 1893 1.639298 CGAGTAGCAAGCAAGCCACC 61.639 60.000 0.00 0.00 34.23 4.61
1951 2088 5.934935 TCGAATACATCTATCAGTACGCA 57.065 39.130 0.00 0.00 0.00 5.24
1958 2095 8.887036 ATACATCTATCAGTACGCAATTCAAA 57.113 30.769 0.00 0.00 0.00 2.69
1963 2100 1.196808 CAGTACGCAATTCAAACGGCT 59.803 47.619 0.00 0.00 0.00 5.52
1964 2101 1.877443 AGTACGCAATTCAAACGGCTT 59.123 42.857 0.00 0.00 0.00 4.35
1980 2117 5.278964 ACGGCTTCGTTTTTAGATCTTTC 57.721 39.130 0.00 0.00 45.87 2.62
1984 2121 7.172019 ACGGCTTCGTTTTTAGATCTTTCTTTA 59.828 33.333 0.00 0.00 45.87 1.85
2002 2140 9.661563 CTTTCTTTAAGTTTTGTTAGGGGTTTT 57.338 29.630 0.00 0.00 0.00 2.43
2007 2145 5.347620 AGTTTTGTTAGGGGTTTTTGTCC 57.652 39.130 0.00 0.00 0.00 4.02
2009 2147 5.105106 AGTTTTGTTAGGGGTTTTTGTCCTG 60.105 40.000 0.00 0.00 32.46 3.86
2010 2148 3.955524 TGTTAGGGGTTTTTGTCCTGA 57.044 42.857 0.00 0.00 32.46 3.86
2030 2168 6.462552 CTGATCAGGAAGTTGAGATAGTGA 57.537 41.667 15.38 0.00 0.00 3.41
2033 2171 3.444034 TCAGGAAGTTGAGATAGTGACGG 59.556 47.826 0.00 0.00 0.00 4.79
2040 2179 2.293170 TGAGATAGTGACGGCTCTCTG 58.707 52.381 0.00 0.00 36.07 3.35
2043 2182 2.948979 AGATAGTGACGGCTCTCTGAAG 59.051 50.000 0.00 0.00 0.00 3.02
2046 2185 3.006112 AGTGACGGCTCTCTGAAGATA 57.994 47.619 0.00 0.00 0.00 1.98
2056 2195 6.763610 CGGCTCTCTGAAGATAAAATAAGGTT 59.236 38.462 0.00 0.00 0.00 3.50
2071 2210 6.835819 AATAAGGTTCTTTTTGTCTAGCCC 57.164 37.500 0.00 0.00 0.00 5.19
2072 2211 3.876309 AGGTTCTTTTTGTCTAGCCCA 57.124 42.857 0.00 0.00 0.00 5.36
2073 2212 4.388577 AGGTTCTTTTTGTCTAGCCCAT 57.611 40.909 0.00 0.00 0.00 4.00
2074 2213 4.082125 AGGTTCTTTTTGTCTAGCCCATG 58.918 43.478 0.00 0.00 0.00 3.66
2077 2216 5.221441 GGTTCTTTTTGTCTAGCCCATGTTT 60.221 40.000 0.00 0.00 0.00 2.83
2078 2217 6.280643 GTTCTTTTTGTCTAGCCCATGTTTT 58.719 36.000 0.00 0.00 0.00 2.43
2080 2219 4.599047 TTTTGTCTAGCCCATGTTTTGG 57.401 40.909 0.00 0.00 46.00 3.28
2083 2222 2.107378 TGTCTAGCCCATGTTTTGGTGA 59.893 45.455 0.00 0.00 44.83 4.02
2112 2251 1.996898 GCATCATCGGTAAACGTGTGA 59.003 47.619 0.00 0.00 44.69 3.58
2123 2262 1.935933 AACGTGTGAAGGTGTGTCTC 58.064 50.000 0.00 0.00 0.00 3.36
2125 2264 0.939577 CGTGTGAAGGTGTGTCTCCG 60.940 60.000 0.00 0.00 0.00 4.63
2126 2265 1.069090 TGTGAAGGTGTGTCTCCGC 59.931 57.895 0.00 0.00 0.00 5.54
2128 2267 0.946221 GTGAAGGTGTGTCTCCGCTG 60.946 60.000 0.00 0.00 0.00 5.18
2134 2273 1.103803 GTGTGTCTCCGCTGGATCTA 58.896 55.000 0.00 0.00 0.00 1.98
2140 2279 3.068732 TGTCTCCGCTGGATCTATCTTTG 59.931 47.826 0.00 0.00 0.00 2.77
2141 2280 2.630098 TCTCCGCTGGATCTATCTTTGG 59.370 50.000 0.00 0.00 0.00 3.28
2142 2281 2.366916 CTCCGCTGGATCTATCTTTGGT 59.633 50.000 0.00 0.00 0.00 3.67
2143 2282 2.103094 TCCGCTGGATCTATCTTTGGTG 59.897 50.000 0.00 0.00 0.00 4.17
2144 2283 2.487934 CGCTGGATCTATCTTTGGTGG 58.512 52.381 0.00 0.00 0.00 4.61
2145 2284 2.103094 CGCTGGATCTATCTTTGGTGGA 59.897 50.000 0.00 0.00 0.00 4.02
2146 2285 3.244353 CGCTGGATCTATCTTTGGTGGAT 60.244 47.826 0.00 0.00 0.00 3.41
2147 2286 4.322567 GCTGGATCTATCTTTGGTGGATC 58.677 47.826 0.00 0.00 34.00 3.36
2150 2289 5.574970 GGATCTATCTTTGGTGGATCCTT 57.425 43.478 14.23 0.00 45.14 3.36
2151 2290 5.555966 GGATCTATCTTTGGTGGATCCTTC 58.444 45.833 14.23 6.14 45.14 3.46
2152 2291 5.513962 GGATCTATCTTTGGTGGATCCTTCC 60.514 48.000 14.23 15.44 45.14 3.46
2162 2301 2.044123 GGATCCTTCCAATCAACGCT 57.956 50.000 3.84 0.00 42.12 5.07
2163 2302 3.194005 GGATCCTTCCAATCAACGCTA 57.806 47.619 3.84 0.00 42.12 4.26
2164 2303 2.872858 GGATCCTTCCAATCAACGCTAC 59.127 50.000 3.84 0.00 42.12 3.58
2165 2304 3.432326 GGATCCTTCCAATCAACGCTACT 60.432 47.826 3.84 0.00 42.12 2.57
2166 2305 3.247006 TCCTTCCAATCAACGCTACTC 57.753 47.619 0.00 0.00 0.00 2.59
2167 2306 2.832129 TCCTTCCAATCAACGCTACTCT 59.168 45.455 0.00 0.00 0.00 3.24
2168 2307 3.260884 TCCTTCCAATCAACGCTACTCTT 59.739 43.478 0.00 0.00 0.00 2.85
2169 2308 4.003648 CCTTCCAATCAACGCTACTCTTT 58.996 43.478 0.00 0.00 0.00 2.52
2170 2309 5.046878 TCCTTCCAATCAACGCTACTCTTTA 60.047 40.000 0.00 0.00 0.00 1.85
2171 2310 5.817816 CCTTCCAATCAACGCTACTCTTTAT 59.182 40.000 0.00 0.00 0.00 1.40
2172 2311 6.018669 CCTTCCAATCAACGCTACTCTTTATC 60.019 42.308 0.00 0.00 0.00 1.75
2173 2312 5.041287 TCCAATCAACGCTACTCTTTATCG 58.959 41.667 0.00 0.00 0.00 2.92
2174 2313 4.209288 CCAATCAACGCTACTCTTTATCGG 59.791 45.833 0.00 0.00 0.00 4.18
2175 2314 2.805845 TCAACGCTACTCTTTATCGGC 58.194 47.619 0.00 0.00 0.00 5.54
2176 2315 1.517276 CAACGCTACTCTTTATCGGCG 59.483 52.381 0.00 0.00 46.47 6.46
2177 2316 0.030369 ACGCTACTCTTTATCGGCGG 59.970 55.000 7.21 0.00 45.55 6.13
2178 2317 1.276145 CGCTACTCTTTATCGGCGGC 61.276 60.000 7.21 0.00 39.12 6.53
2179 2318 1.276145 GCTACTCTTTATCGGCGGCG 61.276 60.000 27.15 27.15 0.00 6.46
2180 2319 0.663568 CTACTCTTTATCGGCGGCGG 60.664 60.000 31.73 14.95 0.00 6.13
2181 2320 1.386525 TACTCTTTATCGGCGGCGGT 61.387 55.000 31.73 28.07 0.00 5.68
2182 2321 1.520787 CTCTTTATCGGCGGCGGTT 60.521 57.895 31.73 20.84 0.00 4.44
2183 2322 1.762222 CTCTTTATCGGCGGCGGTTG 61.762 60.000 31.73 17.42 0.00 3.77
2184 2323 3.449095 CTTTATCGGCGGCGGTTGC 62.449 63.158 31.73 0.00 41.71 4.17
2185 2324 3.961838 TTTATCGGCGGCGGTTGCT 62.962 57.895 31.73 13.20 42.25 3.91
2192 2331 4.705519 CGGCGGTTGCTGCTTTGG 62.706 66.667 0.00 0.00 41.39 3.28
2193 2332 3.605664 GGCGGTTGCTGCTTTGGT 61.606 61.111 0.00 0.00 42.25 3.67
2194 2333 2.355009 GCGGTTGCTGCTTTGGTG 60.355 61.111 0.00 0.00 38.39 4.17
2195 2334 2.355009 CGGTTGCTGCTTTGGTGC 60.355 61.111 0.00 0.00 0.00 5.01
2196 2335 2.355009 GGTTGCTGCTTTGGTGCG 60.355 61.111 0.00 0.00 35.36 5.34
2197 2336 3.032033 GTTGCTGCTTTGGTGCGC 61.032 61.111 0.00 0.00 35.36 6.09
2198 2337 3.218470 TTGCTGCTTTGGTGCGCT 61.218 55.556 9.73 0.00 35.04 5.92
2199 2338 3.487764 TTGCTGCTTTGGTGCGCTG 62.488 57.895 9.73 0.00 35.04 5.18
2200 2339 4.712425 GCTGCTTTGGTGCGCTGG 62.712 66.667 9.73 0.00 35.36 4.85
2201 2340 3.289834 CTGCTTTGGTGCGCTGGT 61.290 61.111 9.73 0.00 35.36 4.00
2202 2341 3.259425 CTGCTTTGGTGCGCTGGTC 62.259 63.158 9.73 0.00 35.36 4.02
2203 2342 2.980233 GCTTTGGTGCGCTGGTCT 60.980 61.111 9.73 0.00 0.00 3.85
2204 2343 2.555547 GCTTTGGTGCGCTGGTCTT 61.556 57.895 9.73 0.00 0.00 3.01
2205 2344 1.234615 GCTTTGGTGCGCTGGTCTTA 61.235 55.000 9.73 0.00 0.00 2.10
2206 2345 1.453155 CTTTGGTGCGCTGGTCTTAT 58.547 50.000 9.73 0.00 0.00 1.73
2207 2346 2.627945 CTTTGGTGCGCTGGTCTTATA 58.372 47.619 9.73 0.00 0.00 0.98
2208 2347 2.772077 TTGGTGCGCTGGTCTTATAA 57.228 45.000 9.73 0.00 0.00 0.98
2209 2348 3.275617 TTGGTGCGCTGGTCTTATAAT 57.724 42.857 9.73 0.00 0.00 1.28
2210 2349 2.560504 TGGTGCGCTGGTCTTATAATG 58.439 47.619 9.73 0.00 0.00 1.90
2211 2350 1.264288 GGTGCGCTGGTCTTATAATGC 59.736 52.381 9.73 0.00 0.00 3.56
2212 2351 2.213499 GTGCGCTGGTCTTATAATGCT 58.787 47.619 9.73 0.00 0.00 3.79
2213 2352 2.614057 GTGCGCTGGTCTTATAATGCTT 59.386 45.455 9.73 0.00 0.00 3.91
2214 2353 3.065371 GTGCGCTGGTCTTATAATGCTTT 59.935 43.478 9.73 0.00 0.00 3.51
2215 2354 4.272504 GTGCGCTGGTCTTATAATGCTTTA 59.727 41.667 9.73 0.00 0.00 1.85
2216 2355 4.511454 TGCGCTGGTCTTATAATGCTTTAG 59.489 41.667 9.73 0.00 0.00 1.85
2217 2356 4.611581 GCGCTGGTCTTATAATGCTTTAGC 60.612 45.833 0.00 0.00 42.50 3.09
2231 2370 4.980988 GCTTTAGCATGACGATTTTTCG 57.019 40.909 0.00 0.00 41.59 3.46
2232 2371 4.647964 GCTTTAGCATGACGATTTTTCGA 58.352 39.130 0.00 0.00 41.59 3.71
2233 2372 4.492294 GCTTTAGCATGACGATTTTTCGAC 59.508 41.667 0.00 0.00 41.59 4.20
2234 2373 5.671329 GCTTTAGCATGACGATTTTTCGACT 60.671 40.000 0.00 0.00 41.59 4.18
2235 2374 3.729526 AGCATGACGATTTTTCGACTG 57.270 42.857 0.00 0.00 36.85 3.51
2236 2375 3.067106 AGCATGACGATTTTTCGACTGT 58.933 40.909 0.00 0.00 36.85 3.55
2237 2376 3.123621 AGCATGACGATTTTTCGACTGTC 59.876 43.478 0.00 0.00 36.85 3.51
2238 2377 3.123621 GCATGACGATTTTTCGACTGTCT 59.876 43.478 6.21 0.00 36.85 3.41
2239 2378 4.326278 GCATGACGATTTTTCGACTGTCTA 59.674 41.667 6.21 0.00 36.85 2.59
2240 2379 5.721510 GCATGACGATTTTTCGACTGTCTAC 60.722 44.000 6.21 0.00 36.85 2.59
2241 2380 5.117355 TGACGATTTTTCGACTGTCTACT 57.883 39.130 6.21 0.00 36.85 2.57
2242 2381 6.245115 TGACGATTTTTCGACTGTCTACTA 57.755 37.500 6.21 0.00 36.85 1.82
2243 2382 6.082338 TGACGATTTTTCGACTGTCTACTAC 58.918 40.000 6.21 0.00 36.85 2.73
2244 2383 6.005583 ACGATTTTTCGACTGTCTACTACA 57.994 37.500 6.21 0.00 36.85 2.74
2245 2384 6.441274 ACGATTTTTCGACTGTCTACTACAA 58.559 36.000 6.21 0.00 35.76 2.41
2246 2385 7.088905 ACGATTTTTCGACTGTCTACTACAAT 58.911 34.615 6.21 0.00 35.76 2.71
2247 2386 8.239314 ACGATTTTTCGACTGTCTACTACAATA 58.761 33.333 6.21 0.00 35.76 1.90
2248 2387 9.069078 CGATTTTTCGACTGTCTACTACAATAA 57.931 33.333 6.21 0.00 34.50 1.40
2250 2389 9.924650 ATTTTTCGACTGTCTACTACAATAAGT 57.075 29.630 6.21 0.00 37.74 2.24
2251 2390 9.754382 TTTTTCGACTGTCTACTACAATAAGTT 57.246 29.630 6.21 0.00 37.74 2.66
2252 2391 9.754382 TTTTCGACTGTCTACTACAATAAGTTT 57.246 29.630 6.21 0.00 37.74 2.66
2253 2392 9.754382 TTTCGACTGTCTACTACAATAAGTTTT 57.246 29.630 6.21 0.00 37.74 2.43
2254 2393 8.738199 TCGACTGTCTACTACAATAAGTTTTG 57.262 34.615 6.21 0.00 37.74 2.44
2255 2394 8.355169 TCGACTGTCTACTACAATAAGTTTTGT 58.645 33.333 6.21 8.02 42.31 2.83
2256 2395 8.636843 CGACTGTCTACTACAATAAGTTTTGTC 58.363 37.037 6.21 0.00 40.25 3.18
2257 2396 8.828688 ACTGTCTACTACAATAAGTTTTGTCC 57.171 34.615 6.68 0.00 40.25 4.02
2258 2397 7.597743 ACTGTCTACTACAATAAGTTTTGTCCG 59.402 37.037 6.68 4.02 40.25 4.79
2259 2398 6.869913 TGTCTACTACAATAAGTTTTGTCCGG 59.130 38.462 0.00 0.00 40.25 5.14
2260 2399 5.870978 TCTACTACAATAAGTTTTGTCCGGC 59.129 40.000 0.00 0.00 40.25 6.13
2261 2400 4.648651 ACTACAATAAGTTTTGTCCGGCT 58.351 39.130 0.00 0.00 40.25 5.52
2262 2401 4.694037 ACTACAATAAGTTTTGTCCGGCTC 59.306 41.667 0.00 0.00 40.25 4.70
2263 2402 3.751518 ACAATAAGTTTTGTCCGGCTCT 58.248 40.909 0.00 0.00 34.83 4.09
2264 2403 3.502211 ACAATAAGTTTTGTCCGGCTCTG 59.498 43.478 0.00 0.00 34.83 3.35
2265 2404 2.178912 TAAGTTTTGTCCGGCTCTGG 57.821 50.000 0.00 0.00 0.00 3.86
2266 2405 0.182775 AAGTTTTGTCCGGCTCTGGT 59.817 50.000 0.00 0.00 0.00 4.00
2267 2406 0.535102 AGTTTTGTCCGGCTCTGGTG 60.535 55.000 0.00 0.00 0.00 4.17
2268 2407 0.534203 GTTTTGTCCGGCTCTGGTGA 60.534 55.000 0.00 0.00 0.00 4.02
2269 2408 0.400213 TTTTGTCCGGCTCTGGTGAT 59.600 50.000 0.00 0.00 0.00 3.06
2270 2409 0.321564 TTTGTCCGGCTCTGGTGATG 60.322 55.000 0.00 0.00 0.00 3.07
2271 2410 1.480212 TTGTCCGGCTCTGGTGATGT 61.480 55.000 0.00 0.00 0.00 3.06
2272 2411 0.613572 TGTCCGGCTCTGGTGATGTA 60.614 55.000 0.00 0.00 0.00 2.29
2273 2412 0.103208 GTCCGGCTCTGGTGATGTAG 59.897 60.000 0.00 0.00 0.00 2.74
2274 2413 1.043116 TCCGGCTCTGGTGATGTAGG 61.043 60.000 0.00 0.00 0.00 3.18
2275 2414 1.443407 CGGCTCTGGTGATGTAGGG 59.557 63.158 0.00 0.00 0.00 3.53
2276 2415 1.832912 GGCTCTGGTGATGTAGGGG 59.167 63.158 0.00 0.00 0.00 4.79
2277 2416 1.147153 GCTCTGGTGATGTAGGGGC 59.853 63.158 0.00 0.00 0.00 5.80
2278 2417 1.443407 CTCTGGTGATGTAGGGGCG 59.557 63.158 0.00 0.00 0.00 6.13
2279 2418 1.001120 TCTGGTGATGTAGGGGCGA 59.999 57.895 0.00 0.00 0.00 5.54
2280 2419 0.398522 TCTGGTGATGTAGGGGCGAT 60.399 55.000 0.00 0.00 0.00 4.58
2281 2420 0.250038 CTGGTGATGTAGGGGCGATG 60.250 60.000 0.00 0.00 0.00 3.84
2282 2421 0.689412 TGGTGATGTAGGGGCGATGA 60.689 55.000 0.00 0.00 0.00 2.92
2283 2422 0.249911 GGTGATGTAGGGGCGATGAC 60.250 60.000 0.00 0.00 0.00 3.06
2284 2423 0.597637 GTGATGTAGGGGCGATGACG 60.598 60.000 0.00 0.00 42.93 4.35
2285 2424 1.006102 GATGTAGGGGCGATGACGG 60.006 63.158 0.00 0.00 40.15 4.79
2309 2448 4.511636 GCCTTCGGCTCTCTTCAG 57.488 61.111 0.00 0.00 46.69 3.02
2310 2449 1.594310 GCCTTCGGCTCTCTTCAGT 59.406 57.895 0.00 0.00 46.69 3.41
2311 2450 0.739112 GCCTTCGGCTCTCTTCAGTG 60.739 60.000 0.00 0.00 46.69 3.66
2312 2451 0.739112 CCTTCGGCTCTCTTCAGTGC 60.739 60.000 0.00 0.00 38.25 4.40
2313 2452 0.246086 CTTCGGCTCTCTTCAGTGCT 59.754 55.000 0.00 0.00 38.87 4.40
2314 2453 0.681733 TTCGGCTCTCTTCAGTGCTT 59.318 50.000 0.00 0.00 38.87 3.91
2315 2454 0.244994 TCGGCTCTCTTCAGTGCTTC 59.755 55.000 0.00 0.00 38.87 3.86
2316 2455 0.246086 CGGCTCTCTTCAGTGCTTCT 59.754 55.000 0.00 0.00 38.87 2.85
2317 2456 1.474478 CGGCTCTCTTCAGTGCTTCTA 59.526 52.381 0.00 0.00 38.87 2.10
2318 2457 2.479389 CGGCTCTCTTCAGTGCTTCTAG 60.479 54.545 0.00 0.00 38.87 2.43
2319 2458 2.495669 GGCTCTCTTCAGTGCTTCTAGT 59.504 50.000 0.00 0.00 38.87 2.57
2320 2459 3.428862 GGCTCTCTTCAGTGCTTCTAGTC 60.429 52.174 0.00 0.00 38.87 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 92 4.905429 AGAGGCTTTCTTCTTCTTCTTCC 58.095 43.478 0.00 0.00 29.61 3.46
107 108 5.344743 TCTCAAAATAATCACGAGAGGCT 57.655 39.130 0.00 0.00 0.00 4.58
108 109 5.649602 CTCTCAAAATAATCACGAGAGGC 57.350 43.478 6.80 0.00 43.85 4.70
155 225 7.747799 CAGAGGCTTACGCATGATTTTATATTG 59.252 37.037 0.00 0.00 38.10 1.90
183 253 4.981806 TGTACATGCCCTTATTCTTTGC 57.018 40.909 0.00 0.00 0.00 3.68
184 254 7.099266 TCATTGTACATGCCCTTATTCTTTG 57.901 36.000 0.00 0.00 0.00 2.77
191 261 3.221771 GCCATCATTGTACATGCCCTTA 58.778 45.455 0.00 0.00 0.00 2.69
192 262 2.034124 GCCATCATTGTACATGCCCTT 58.966 47.619 0.00 0.00 0.00 3.95
193 263 1.063792 TGCCATCATTGTACATGCCCT 60.064 47.619 0.00 0.00 0.00 5.19
194 264 1.401761 TGCCATCATTGTACATGCCC 58.598 50.000 0.00 0.00 0.00 5.36
195 265 4.381185 CCATATGCCATCATTGTACATGCC 60.381 45.833 0.00 0.00 34.22 4.40
196 266 4.460034 TCCATATGCCATCATTGTACATGC 59.540 41.667 0.00 0.00 34.22 4.06
197 267 6.769134 ATCCATATGCCATCATTGTACATG 57.231 37.500 0.00 0.00 34.22 3.21
198 268 7.404481 TGTATCCATATGCCATCATTGTACAT 58.596 34.615 0.00 0.00 34.22 2.29
199 269 6.777782 TGTATCCATATGCCATCATTGTACA 58.222 36.000 0.00 0.00 34.22 2.90
200 270 7.105588 TCTGTATCCATATGCCATCATTGTAC 58.894 38.462 0.00 0.00 34.22 2.90
201 271 7.256494 TCTGTATCCATATGCCATCATTGTA 57.744 36.000 0.00 0.00 34.22 2.41
202 272 6.130692 TCTGTATCCATATGCCATCATTGT 57.869 37.500 0.00 0.00 34.22 2.71
203 273 6.459710 GCATCTGTATCCATATGCCATCATTG 60.460 42.308 0.00 0.00 42.37 2.82
204 274 5.593095 GCATCTGTATCCATATGCCATCATT 59.407 40.000 0.00 0.00 42.37 2.57
205 275 5.131067 GCATCTGTATCCATATGCCATCAT 58.869 41.667 0.00 0.00 42.37 2.45
206 276 4.520179 GCATCTGTATCCATATGCCATCA 58.480 43.478 0.00 0.00 42.37 3.07
211 281 2.025981 TGGGGCATCTGTATCCATATGC 60.026 50.000 0.00 0.59 45.53 3.14
212 282 4.080186 TCATGGGGCATCTGTATCCATATG 60.080 45.833 0.00 0.00 36.55 1.78
213 283 4.080129 GTCATGGGGCATCTGTATCCATAT 60.080 45.833 0.00 0.00 36.55 1.78
214 284 3.264193 GTCATGGGGCATCTGTATCCATA 59.736 47.826 0.00 0.00 36.55 2.74
215 285 2.040813 GTCATGGGGCATCTGTATCCAT 59.959 50.000 0.00 0.00 38.61 3.41
216 286 1.421268 GTCATGGGGCATCTGTATCCA 59.579 52.381 0.00 0.00 0.00 3.41
217 287 1.421268 TGTCATGGGGCATCTGTATCC 59.579 52.381 0.00 0.00 0.00 2.59
218 288 2.936919 TGTCATGGGGCATCTGTATC 57.063 50.000 0.00 0.00 0.00 2.24
219 289 3.668141 TTTGTCATGGGGCATCTGTAT 57.332 42.857 0.00 0.00 0.00 2.29
220 290 3.448093 TTTTGTCATGGGGCATCTGTA 57.552 42.857 0.00 0.00 0.00 2.74
221 291 2.307496 TTTTGTCATGGGGCATCTGT 57.693 45.000 0.00 0.00 0.00 3.41
222 292 2.564062 ACTTTTTGTCATGGGGCATCTG 59.436 45.455 0.00 0.00 0.00 2.90
223 293 2.893424 ACTTTTTGTCATGGGGCATCT 58.107 42.857 0.00 0.00 0.00 2.90
224 294 3.763897 ACTACTTTTTGTCATGGGGCATC 59.236 43.478 0.00 0.00 0.00 3.91
225 295 3.778265 ACTACTTTTTGTCATGGGGCAT 58.222 40.909 0.00 0.00 0.00 4.40
226 296 3.237268 ACTACTTTTTGTCATGGGGCA 57.763 42.857 0.00 0.00 0.00 5.36
227 297 4.038642 TCAAACTACTTTTTGTCATGGGGC 59.961 41.667 0.00 0.00 37.66 5.80
228 298 5.278957 CCTCAAACTACTTTTTGTCATGGGG 60.279 44.000 0.00 0.00 37.66 4.96
229 299 5.772521 CCTCAAACTACTTTTTGTCATGGG 58.227 41.667 0.00 0.00 37.66 4.00
230 300 5.221224 TGCCTCAAACTACTTTTTGTCATGG 60.221 40.000 0.00 0.00 37.66 3.66
231 301 5.830912 TGCCTCAAACTACTTTTTGTCATG 58.169 37.500 0.00 0.00 37.66 3.07
232 302 6.491403 AGATGCCTCAAACTACTTTTTGTCAT 59.509 34.615 0.00 0.00 37.66 3.06
233 303 5.827797 AGATGCCTCAAACTACTTTTTGTCA 59.172 36.000 0.00 0.00 37.66 3.58
234 304 6.319141 AGATGCCTCAAACTACTTTTTGTC 57.681 37.500 0.00 0.00 37.66 3.18
235 305 6.770785 TGTAGATGCCTCAAACTACTTTTTGT 59.229 34.615 0.00 0.00 37.66 2.83
236 306 7.202016 TGTAGATGCCTCAAACTACTTTTTG 57.798 36.000 0.00 0.00 37.75 2.44
237 307 8.409358 AATGTAGATGCCTCAAACTACTTTTT 57.591 30.769 0.00 0.00 36.95 1.94
238 308 8.409358 AAATGTAGATGCCTCAAACTACTTTT 57.591 30.769 0.00 0.00 37.84 2.27
239 309 9.686683 ATAAATGTAGATGCCTCAAACTACTTT 57.313 29.630 0.00 0.00 36.95 2.66
240 310 9.686683 AATAAATGTAGATGCCTCAAACTACTT 57.313 29.630 0.00 0.00 36.95 2.24
241 311 9.686683 AAATAAATGTAGATGCCTCAAACTACT 57.313 29.630 0.00 0.00 36.95 2.57
266 336 4.218417 GGTAGCTTGCATTGAGGAGAAAAA 59.782 41.667 0.00 0.00 0.00 1.94
267 337 3.758554 GGTAGCTTGCATTGAGGAGAAAA 59.241 43.478 0.00 0.00 0.00 2.29
268 338 3.244875 TGGTAGCTTGCATTGAGGAGAAA 60.245 43.478 0.00 0.00 0.00 2.52
269 339 2.305635 TGGTAGCTTGCATTGAGGAGAA 59.694 45.455 0.00 0.00 0.00 2.87
270 340 1.908619 TGGTAGCTTGCATTGAGGAGA 59.091 47.619 0.00 0.00 0.00 3.71
271 341 2.408271 TGGTAGCTTGCATTGAGGAG 57.592 50.000 0.00 0.00 0.00 3.69
272 342 3.370840 AATGGTAGCTTGCATTGAGGA 57.629 42.857 0.00 0.00 0.00 3.71
273 343 4.036027 CACTAATGGTAGCTTGCATTGAGG 59.964 45.833 0.00 0.00 0.00 3.86
274 344 4.036027 CCACTAATGGTAGCTTGCATTGAG 59.964 45.833 0.00 0.00 41.64 3.02
275 345 3.947196 CCACTAATGGTAGCTTGCATTGA 59.053 43.478 0.00 0.00 41.64 2.57
276 346 3.067180 CCCACTAATGGTAGCTTGCATTG 59.933 47.826 0.00 0.00 45.66 2.82
277 347 3.290710 CCCACTAATGGTAGCTTGCATT 58.709 45.455 0.00 0.00 45.66 3.56
278 348 2.936202 CCCACTAATGGTAGCTTGCAT 58.064 47.619 0.00 0.00 45.66 3.96
279 349 1.681780 GCCCACTAATGGTAGCTTGCA 60.682 52.381 0.00 0.00 45.66 4.08
280 350 1.025041 GCCCACTAATGGTAGCTTGC 58.975 55.000 0.00 0.00 45.66 4.01
281 351 1.212935 AGGCCCACTAATGGTAGCTTG 59.787 52.381 0.00 0.00 45.66 4.01
282 352 1.490910 GAGGCCCACTAATGGTAGCTT 59.509 52.381 0.00 0.00 45.66 3.74
283 353 1.132500 GAGGCCCACTAATGGTAGCT 58.868 55.000 0.00 0.00 45.66 3.32
284 354 0.837272 TGAGGCCCACTAATGGTAGC 59.163 55.000 0.00 0.00 45.66 3.58
285 355 3.864789 AATGAGGCCCACTAATGGTAG 57.135 47.619 0.00 0.00 45.66 3.18
286 356 4.972568 TCTTAATGAGGCCCACTAATGGTA 59.027 41.667 0.00 0.00 45.66 3.25
287 357 3.785887 TCTTAATGAGGCCCACTAATGGT 59.214 43.478 0.00 0.00 45.66 3.55
288 358 4.437682 TCTTAATGAGGCCCACTAATGG 57.562 45.455 0.00 0.00 46.81 3.16
289 359 6.966534 ATTTCTTAATGAGGCCCACTAATG 57.033 37.500 0.00 0.00 0.00 1.90
290 360 8.045720 TCTATTTCTTAATGAGGCCCACTAAT 57.954 34.615 0.00 0.00 0.00 1.73
291 361 7.446106 TCTATTTCTTAATGAGGCCCACTAA 57.554 36.000 0.00 0.00 0.00 2.24
292 362 7.446106 TTCTATTTCTTAATGAGGCCCACTA 57.554 36.000 0.00 0.00 0.00 2.74
293 363 5.975988 TCTATTTCTTAATGAGGCCCACT 57.024 39.130 0.00 0.00 0.00 4.00
294 364 7.404671 TTTTCTATTTCTTAATGAGGCCCAC 57.595 36.000 0.00 0.00 0.00 4.61
295 365 9.707957 TTATTTTCTATTTCTTAATGAGGCCCA 57.292 29.630 0.00 0.00 0.00 5.36
317 387 9.672673 AGATGCATGTGTACTAAAGTCTTTATT 57.327 29.630 2.46 3.27 0.00 1.40
318 388 9.319143 GAGATGCATGTGTACTAAAGTCTTTAT 57.681 33.333 2.46 0.30 0.00 1.40
319 389 8.531982 AGAGATGCATGTGTACTAAAGTCTTTA 58.468 33.333 2.46 4.97 0.00 1.85
320 390 7.390027 AGAGATGCATGTGTACTAAAGTCTTT 58.610 34.615 2.46 2.81 0.00 2.52
321 391 6.940739 AGAGATGCATGTGTACTAAAGTCTT 58.059 36.000 2.46 0.00 0.00 3.01
322 392 6.537453 AGAGATGCATGTGTACTAAAGTCT 57.463 37.500 2.46 0.00 0.00 3.24
323 393 8.879342 AATAGAGATGCATGTGTACTAAAGTC 57.121 34.615 2.46 0.00 0.00 3.01
324 394 9.672673 AAAATAGAGATGCATGTGTACTAAAGT 57.327 29.630 2.46 0.00 0.00 2.66
327 397 9.665719 TGAAAAATAGAGATGCATGTGTACTAA 57.334 29.630 2.46 0.00 0.00 2.24
328 398 9.098355 GTGAAAAATAGAGATGCATGTGTACTA 57.902 33.333 2.46 0.00 0.00 1.82
329 399 7.826252 AGTGAAAAATAGAGATGCATGTGTACT 59.174 33.333 2.46 0.00 0.00 2.73
330 400 7.978982 AGTGAAAAATAGAGATGCATGTGTAC 58.021 34.615 2.46 0.00 0.00 2.90
331 401 7.280876 GGAGTGAAAAATAGAGATGCATGTGTA 59.719 37.037 2.46 2.80 0.00 2.90
332 402 6.094603 GGAGTGAAAAATAGAGATGCATGTGT 59.905 38.462 2.46 0.00 0.00 3.72
333 403 6.094464 TGGAGTGAAAAATAGAGATGCATGTG 59.906 38.462 2.46 0.00 0.00 3.21
334 404 6.182627 TGGAGTGAAAAATAGAGATGCATGT 58.817 36.000 2.46 0.00 0.00 3.21
335 405 6.688637 TGGAGTGAAAAATAGAGATGCATG 57.311 37.500 2.46 0.00 0.00 4.06
336 406 6.096001 GGTTGGAGTGAAAAATAGAGATGCAT 59.904 38.462 0.00 0.00 0.00 3.96
337 407 5.415701 GGTTGGAGTGAAAAATAGAGATGCA 59.584 40.000 0.00 0.00 0.00 3.96
338 408 5.649831 AGGTTGGAGTGAAAAATAGAGATGC 59.350 40.000 0.00 0.00 0.00 3.91
339 409 7.693969 AAGGTTGGAGTGAAAAATAGAGATG 57.306 36.000 0.00 0.00 0.00 2.90
340 410 8.712228 AAAAGGTTGGAGTGAAAAATAGAGAT 57.288 30.769 0.00 0.00 0.00 2.75
341 411 7.777910 TGAAAAGGTTGGAGTGAAAAATAGAGA 59.222 33.333 0.00 0.00 0.00 3.10
342 412 7.940850 TGAAAAGGTTGGAGTGAAAAATAGAG 58.059 34.615 0.00 0.00 0.00 2.43
343 413 7.470009 GCTGAAAAGGTTGGAGTGAAAAATAGA 60.470 37.037 0.00 0.00 0.00 1.98
344 414 6.642540 GCTGAAAAGGTTGGAGTGAAAAATAG 59.357 38.462 0.00 0.00 0.00 1.73
345 415 6.323739 AGCTGAAAAGGTTGGAGTGAAAAATA 59.676 34.615 0.00 0.00 0.00 1.40
346 416 5.129320 AGCTGAAAAGGTTGGAGTGAAAAAT 59.871 36.000 0.00 0.00 0.00 1.82
347 417 4.466015 AGCTGAAAAGGTTGGAGTGAAAAA 59.534 37.500 0.00 0.00 0.00 1.94
348 418 4.023291 AGCTGAAAAGGTTGGAGTGAAAA 58.977 39.130 0.00 0.00 0.00 2.29
349 419 3.631250 AGCTGAAAAGGTTGGAGTGAAA 58.369 40.909 0.00 0.00 0.00 2.69
350 420 3.297134 AGCTGAAAAGGTTGGAGTGAA 57.703 42.857 0.00 0.00 0.00 3.18
351 421 3.297134 AAGCTGAAAAGGTTGGAGTGA 57.703 42.857 0.00 0.00 0.00 3.41
352 422 4.114794 CAAAAGCTGAAAAGGTTGGAGTG 58.885 43.478 0.00 0.00 0.00 3.51
353 423 4.023291 TCAAAAGCTGAAAAGGTTGGAGT 58.977 39.130 0.00 0.00 0.00 3.85
354 424 4.654091 TCAAAAGCTGAAAAGGTTGGAG 57.346 40.909 0.00 0.00 0.00 3.86
355 425 4.039124 GGATCAAAAGCTGAAAAGGTTGGA 59.961 41.667 0.00 0.00 37.67 3.53
356 426 4.309933 GGATCAAAAGCTGAAAAGGTTGG 58.690 43.478 0.00 0.00 37.67 3.77
357 427 4.309933 GGGATCAAAAGCTGAAAAGGTTG 58.690 43.478 0.00 0.00 37.67 3.77
358 428 3.005791 CGGGATCAAAAGCTGAAAAGGTT 59.994 43.478 0.00 0.00 37.67 3.50
359 429 2.558359 CGGGATCAAAAGCTGAAAAGGT 59.442 45.455 0.00 0.00 37.67 3.50
360 430 2.094545 CCGGGATCAAAAGCTGAAAAGG 60.095 50.000 0.00 0.00 37.67 3.11
361 431 2.819608 TCCGGGATCAAAAGCTGAAAAG 59.180 45.455 0.00 0.00 37.67 2.27
362 432 2.556622 GTCCGGGATCAAAAGCTGAAAA 59.443 45.455 0.00 0.00 37.67 2.29
363 433 2.159382 GTCCGGGATCAAAAGCTGAAA 58.841 47.619 0.00 0.00 37.67 2.69
364 434 1.613255 GGTCCGGGATCAAAAGCTGAA 60.613 52.381 0.00 0.00 37.67 3.02
365 435 0.035439 GGTCCGGGATCAAAAGCTGA 60.035 55.000 0.00 0.00 38.81 4.26
366 436 0.322456 TGGTCCGGGATCAAAAGCTG 60.322 55.000 7.73 0.00 0.00 4.24
367 437 0.322546 GTGGTCCGGGATCAAAAGCT 60.323 55.000 12.49 0.00 0.00 3.74
368 438 0.608035 TGTGGTCCGGGATCAAAAGC 60.608 55.000 12.49 0.00 0.00 3.51
369 439 1.165270 GTGTGGTCCGGGATCAAAAG 58.835 55.000 12.49 0.00 0.00 2.27
370 440 0.768622 AGTGTGGTCCGGGATCAAAA 59.231 50.000 12.49 0.17 0.00 2.44
371 441 0.768622 AAGTGTGGTCCGGGATCAAA 59.231 50.000 12.49 3.14 0.00 2.69
372 442 0.768622 AAAGTGTGGTCCGGGATCAA 59.231 50.000 12.49 0.00 0.00 2.57
373 443 0.768622 AAAAGTGTGGTCCGGGATCA 59.231 50.000 5.72 5.72 0.00 2.92
374 444 1.450025 GAAAAGTGTGGTCCGGGATC 58.550 55.000 0.00 0.00 0.00 3.36
375 445 0.037734 GGAAAAGTGTGGTCCGGGAT 59.962 55.000 0.00 0.00 0.00 3.85
376 446 1.057851 AGGAAAAGTGTGGTCCGGGA 61.058 55.000 0.00 0.00 36.49 5.14
377 447 0.605589 GAGGAAAAGTGTGGTCCGGG 60.606 60.000 0.00 0.00 36.49 5.73
378 448 0.396811 AGAGGAAAAGTGTGGTCCGG 59.603 55.000 0.00 0.00 36.49 5.14
379 449 1.608283 GGAGAGGAAAAGTGTGGTCCG 60.608 57.143 0.00 0.00 36.49 4.79
380 450 1.420138 TGGAGAGGAAAAGTGTGGTCC 59.580 52.381 0.00 0.00 0.00 4.46
381 451 2.930826 TGGAGAGGAAAAGTGTGGTC 57.069 50.000 0.00 0.00 0.00 4.02
382 452 2.749800 GCTTGGAGAGGAAAAGTGTGGT 60.750 50.000 0.00 0.00 0.00 4.16
383 453 1.882623 GCTTGGAGAGGAAAAGTGTGG 59.117 52.381 0.00 0.00 0.00 4.17
384 454 2.291741 GTGCTTGGAGAGGAAAAGTGTG 59.708 50.000 0.00 0.00 0.00 3.82
385 455 2.576615 GTGCTTGGAGAGGAAAAGTGT 58.423 47.619 0.00 0.00 0.00 3.55
386 456 1.882623 GGTGCTTGGAGAGGAAAAGTG 59.117 52.381 0.00 0.00 0.00 3.16
387 457 1.777272 AGGTGCTTGGAGAGGAAAAGT 59.223 47.619 0.00 0.00 0.00 2.66
388 458 2.157738 CAGGTGCTTGGAGAGGAAAAG 58.842 52.381 0.00 0.00 0.00 2.27
389 459 1.819305 GCAGGTGCTTGGAGAGGAAAA 60.819 52.381 0.00 0.00 38.21 2.29
390 460 0.250901 GCAGGTGCTTGGAGAGGAAA 60.251 55.000 0.00 0.00 38.21 3.13
391 461 1.376466 GCAGGTGCTTGGAGAGGAA 59.624 57.895 0.00 0.00 38.21 3.36
392 462 2.596851 GGCAGGTGCTTGGAGAGGA 61.597 63.158 1.26 0.00 41.70 3.71
393 463 2.045536 GGCAGGTGCTTGGAGAGG 60.046 66.667 1.26 0.00 41.70 3.69
394 464 1.078567 GAGGCAGGTGCTTGGAGAG 60.079 63.158 1.26 0.00 41.70 3.20
395 465 2.596851 GGAGGCAGGTGCTTGGAGA 61.597 63.158 1.26 0.00 41.70 3.71
396 466 2.045536 GGAGGCAGGTGCTTGGAG 60.046 66.667 1.26 0.00 41.70 3.86
397 467 2.530151 AGGAGGCAGGTGCTTGGA 60.530 61.111 1.26 0.00 41.70 3.53
398 468 2.045536 GAGGAGGCAGGTGCTTGG 60.046 66.667 1.26 0.00 41.70 3.61
399 469 2.435586 CGAGGAGGCAGGTGCTTG 60.436 66.667 1.26 0.00 41.70 4.01
400 470 2.604686 TCGAGGAGGCAGGTGCTT 60.605 61.111 1.26 0.00 41.70 3.91
401 471 3.073735 CTCGAGGAGGCAGGTGCT 61.074 66.667 3.91 0.00 41.70 4.40
402 472 3.071206 TCTCGAGGAGGCAGGTGC 61.071 66.667 13.56 0.00 41.14 5.01
403 473 3.205395 CTCTCGAGGAGGCAGGTG 58.795 66.667 13.56 0.00 38.35 4.00
412 482 1.395826 AAAGCGGGATCCTCTCGAGG 61.396 60.000 13.56 6.63 44.60 4.63
413 483 0.031449 GAAAGCGGGATCCTCTCGAG 59.969 60.000 12.58 5.93 44.60 4.04
414 484 1.392710 GGAAAGCGGGATCCTCTCGA 61.393 60.000 12.58 0.00 44.60 4.04
415 485 1.068250 GGAAAGCGGGATCCTCTCG 59.932 63.158 12.58 8.17 44.64 4.04
416 486 1.705873 TAGGAAAGCGGGATCCTCTC 58.294 55.000 12.58 0.93 42.44 3.20
417 487 2.252714 GATAGGAAAGCGGGATCCTCT 58.747 52.381 12.58 6.48 42.44 3.69
418 488 1.276705 GGATAGGAAAGCGGGATCCTC 59.723 57.143 12.58 4.01 42.44 3.71
420 490 0.037232 CGGATAGGAAAGCGGGATCC 60.037 60.000 1.92 1.92 35.88 3.36
421 491 0.966920 TCGGATAGGAAAGCGGGATC 59.033 55.000 0.00 0.00 0.00 3.36
422 492 1.070289 GTTCGGATAGGAAAGCGGGAT 59.930 52.381 0.00 0.00 0.00 3.85
423 493 0.462789 GTTCGGATAGGAAAGCGGGA 59.537 55.000 0.00 0.00 0.00 5.14
424 494 0.532196 GGTTCGGATAGGAAAGCGGG 60.532 60.000 0.00 0.00 0.00 6.13
425 495 0.464452 AGGTTCGGATAGGAAAGCGG 59.536 55.000 0.00 0.00 0.00 5.52
426 496 2.361438 AGTAGGTTCGGATAGGAAAGCG 59.639 50.000 0.00 0.00 0.00 4.68
427 497 4.403585 AAGTAGGTTCGGATAGGAAAGC 57.596 45.455 0.00 0.00 0.00 3.51
428 498 5.975939 CGTAAAGTAGGTTCGGATAGGAAAG 59.024 44.000 0.00 0.00 0.00 2.62
429 499 5.418840 ACGTAAAGTAGGTTCGGATAGGAAA 59.581 40.000 0.00 0.00 0.00 3.13
430 500 4.949856 ACGTAAAGTAGGTTCGGATAGGAA 59.050 41.667 0.00 0.00 0.00 3.36
431 501 4.526970 ACGTAAAGTAGGTTCGGATAGGA 58.473 43.478 0.00 0.00 0.00 2.94
432 502 4.336433 TGACGTAAAGTAGGTTCGGATAGG 59.664 45.833 0.00 0.00 0.00 2.57
433 503 5.490139 TGACGTAAAGTAGGTTCGGATAG 57.510 43.478 0.00 0.00 0.00 2.08
434 504 7.094634 GGATATGACGTAAAGTAGGTTCGGATA 60.095 40.741 0.00 0.00 0.00 2.59
435 505 4.996788 ATGACGTAAAGTAGGTTCGGAT 57.003 40.909 0.00 0.00 0.00 4.18
436 506 5.009010 GGATATGACGTAAAGTAGGTTCGGA 59.991 44.000 0.00 0.00 0.00 4.55
437 507 5.218139 GGATATGACGTAAAGTAGGTTCGG 58.782 45.833 0.00 0.00 0.00 4.30
438 508 4.908156 CGGATATGACGTAAAGTAGGTTCG 59.092 45.833 0.00 0.00 0.00 3.95
439 509 6.064846 TCGGATATGACGTAAAGTAGGTTC 57.935 41.667 0.00 0.00 0.00 3.62
440 510 6.294397 GGATCGGATATGACGTAAAGTAGGTT 60.294 42.308 0.00 0.00 0.00 3.50
441 511 5.182760 GGATCGGATATGACGTAAAGTAGGT 59.817 44.000 0.00 0.00 0.00 3.08
442 512 5.415077 AGGATCGGATATGACGTAAAGTAGG 59.585 44.000 0.00 0.00 0.00 3.18
443 513 6.497785 AGGATCGGATATGACGTAAAGTAG 57.502 41.667 0.00 0.00 0.00 2.57
444 514 6.936335 TGTAGGATCGGATATGACGTAAAGTA 59.064 38.462 0.00 0.00 0.00 2.24
445 515 5.766670 TGTAGGATCGGATATGACGTAAAGT 59.233 40.000 0.00 0.00 0.00 2.66
446 516 6.250344 TGTAGGATCGGATATGACGTAAAG 57.750 41.667 0.00 0.00 0.00 1.85
447 517 6.349860 CCATGTAGGATCGGATATGACGTAAA 60.350 42.308 0.00 0.00 41.22 2.01
448 518 5.124936 CCATGTAGGATCGGATATGACGTAA 59.875 44.000 0.00 0.00 41.22 3.18
449 519 4.638865 CCATGTAGGATCGGATATGACGTA 59.361 45.833 0.00 0.00 41.22 3.57
450 520 3.444034 CCATGTAGGATCGGATATGACGT 59.556 47.826 0.00 0.00 41.22 4.34
451 521 3.735208 GCCATGTAGGATCGGATATGACG 60.735 52.174 0.00 0.00 41.22 4.35
452 522 3.195610 TGCCATGTAGGATCGGATATGAC 59.804 47.826 0.00 0.00 41.22 3.06
453 523 3.440127 TGCCATGTAGGATCGGATATGA 58.560 45.455 0.00 0.00 41.22 2.15
454 524 3.893326 TGCCATGTAGGATCGGATATG 57.107 47.619 0.00 0.00 41.22 1.78
455 525 3.432749 GCATGCCATGTAGGATCGGATAT 60.433 47.826 6.36 0.00 41.22 1.63
456 526 2.093500 GCATGCCATGTAGGATCGGATA 60.093 50.000 6.36 0.00 41.22 2.59
457 527 1.339438 GCATGCCATGTAGGATCGGAT 60.339 52.381 6.36 0.00 41.22 4.18
458 528 0.035317 GCATGCCATGTAGGATCGGA 59.965 55.000 6.36 0.00 41.22 4.55
459 529 1.293963 CGCATGCCATGTAGGATCGG 61.294 60.000 13.15 0.00 41.22 4.18
460 530 0.319813 TCGCATGCCATGTAGGATCG 60.320 55.000 13.15 0.23 41.22 3.69
461 531 1.436600 CTCGCATGCCATGTAGGATC 58.563 55.000 13.15 0.00 41.22 3.36
462 532 0.035881 CCTCGCATGCCATGTAGGAT 59.964 55.000 18.19 0.00 41.22 3.24
463 533 1.447217 CCTCGCATGCCATGTAGGA 59.553 57.895 18.19 8.22 41.22 2.94
464 534 2.256591 GCCTCGCATGCCATGTAGG 61.257 63.158 18.53 18.53 38.09 3.18
465 535 1.524393 TGCCTCGCATGCCATGTAG 60.524 57.895 13.15 4.55 31.71 2.74
466 536 2.588989 TGCCTCGCATGCCATGTA 59.411 55.556 13.15 0.00 31.71 2.29
475 545 3.002583 TCAGGGTGATGCCTCGCA 61.003 61.111 4.90 0.00 44.86 5.10
476 546 2.202987 CTCAGGGTGATGCCTCGC 60.203 66.667 0.00 0.00 37.43 5.03
477 547 2.503061 CCTCAGGGTGATGCCTCG 59.497 66.667 0.00 0.00 37.43 4.63
478 548 1.050988 TAGCCTCAGGGTGATGCCTC 61.051 60.000 5.37 0.00 38.54 4.70
479 549 0.401105 ATAGCCTCAGGGTGATGCCT 60.401 55.000 5.37 0.00 38.54 4.75
480 550 0.250640 CATAGCCTCAGGGTGATGCC 60.251 60.000 5.37 0.00 38.54 4.40
481 551 0.888285 GCATAGCCTCAGGGTGATGC 60.888 60.000 16.57 16.57 41.72 3.91
482 552 0.471191 TGCATAGCCTCAGGGTGATG 59.529 55.000 5.37 6.81 34.28 3.07
483 553 1.442773 ATGCATAGCCTCAGGGTGAT 58.557 50.000 5.37 0.00 34.28 3.06
484 554 1.134007 CAATGCATAGCCTCAGGGTGA 60.134 52.381 5.37 0.00 34.28 4.02
485 555 1.315690 CAATGCATAGCCTCAGGGTG 58.684 55.000 5.37 0.00 34.28 4.61
486 556 0.921896 ACAATGCATAGCCTCAGGGT 59.078 50.000 0.00 0.00 37.19 4.34
487 557 2.158769 TGTACAATGCATAGCCTCAGGG 60.159 50.000 0.00 0.00 0.00 4.45
488 558 3.198409 TGTACAATGCATAGCCTCAGG 57.802 47.619 0.00 0.00 0.00 3.86
489 559 3.058432 GCATGTACAATGCATAGCCTCAG 60.058 47.826 19.12 0.00 44.00 3.35
490 560 2.880268 GCATGTACAATGCATAGCCTCA 59.120 45.455 19.12 0.00 44.00 3.86
491 561 2.227388 GGCATGTACAATGCATAGCCTC 59.773 50.000 22.92 7.94 46.21 4.70
492 562 2.233271 GGCATGTACAATGCATAGCCT 58.767 47.619 22.92 0.00 46.21 4.58
493 563 1.270550 GGGCATGTACAATGCATAGCC 59.729 52.381 22.92 16.30 46.21 3.93
494 564 2.233271 AGGGCATGTACAATGCATAGC 58.767 47.619 22.92 11.42 46.21 2.97
495 565 5.474532 ACATTAGGGCATGTACAATGCATAG 59.525 40.000 22.92 13.08 46.21 2.23
496 566 5.384336 ACATTAGGGCATGTACAATGCATA 58.616 37.500 22.92 15.58 46.21 3.14
497 567 4.217510 ACATTAGGGCATGTACAATGCAT 58.782 39.130 22.92 16.26 46.21 3.96
498 568 3.630168 ACATTAGGGCATGTACAATGCA 58.370 40.909 22.92 0.00 46.21 3.96
529 599 4.476297 TGGAGTTACTGGAACACACTAGA 58.524 43.478 5.41 0.00 40.86 2.43
549 619 3.282885 GGGTCCAGCTAAATCTTTCTGG 58.717 50.000 0.92 0.92 45.59 3.86
568 638 5.617751 CGCAAGAATCTACTTTTGAACTGGG 60.618 44.000 0.00 0.00 43.02 4.45
653 723 2.748058 ATCGTGAAGGCAGGGCGTTT 62.748 55.000 0.00 0.00 36.76 3.60
656 726 3.197790 CATCGTGAAGGCAGGGCG 61.198 66.667 0.00 0.00 0.00 6.13
710 780 2.681344 ACTTTTGTTCTCCACCGTGAAC 59.319 45.455 0.00 0.00 41.03 3.18
811 881 2.067766 GCAGCTCTGAAGTCTGAAGTG 58.932 52.381 0.29 0.00 31.98 3.16
882 952 1.668151 GCTTGGTTTCTCGGCGAGT 60.668 57.895 33.31 0.00 0.00 4.18
952 1022 5.230936 CGCACAGTAGTTCTTCAGATACATG 59.769 44.000 0.00 0.00 0.00 3.21
959 1053 6.120378 TCTATACGCACAGTAGTTCTTCAG 57.880 41.667 0.00 0.00 38.94 3.02
980 1074 7.543359 TCCATGAAATCAACTTTCCATTTCT 57.457 32.000 0.00 0.00 42.23 2.52
1027 1121 0.321564 CAGTGCATCCCGACCTTCAA 60.322 55.000 0.00 0.00 0.00 2.69
1083 1177 2.190981 GCTTTCGTACCATCGATCGTT 58.809 47.619 15.94 3.47 39.57 3.85
1124 1221 3.340814 AGTATGGAAAGTGAGGCTGTG 57.659 47.619 0.00 0.00 0.00 3.66
1129 1226 4.074970 ACTGCAAAGTATGGAAAGTGAGG 58.925 43.478 0.00 0.00 0.00 3.86
1157 1261 6.528774 CGCACAAACCAGGGTTAATAATTAAC 59.471 38.462 3.76 0.00 43.65 2.01
1251 1355 0.689745 CCACTTCCTCCGGGGTGATA 60.690 60.000 0.00 0.00 36.25 2.15
1359 1463 3.596214 CGCACTCCCAGTAACAATAAGT 58.404 45.455 0.00 0.00 0.00 2.24
1360 1464 2.936498 CCGCACTCCCAGTAACAATAAG 59.064 50.000 0.00 0.00 0.00 1.73
1424 1528 4.654915 TGATATCCCATGGTAAGCACATG 58.345 43.478 11.73 0.00 44.03 3.21
1457 1561 4.262635 CCAGAATTACCCGATCTGCAGTAT 60.263 45.833 14.67 5.98 39.36 2.12
1477 1581 3.947834 ACCAGTTCAAAGAAACTCACCAG 59.052 43.478 0.00 0.00 37.38 4.00
1528 1632 2.927618 CGACGCCGCGGTCAATATG 61.928 63.158 28.70 10.35 36.73 1.78
1563 1668 6.972901 TGAGTTCAGTATACGCAATACAGAAG 59.027 38.462 13.29 2.35 43.31 2.85
1578 1683 4.623932 AGACTTTGCCATGAGTTCAGTA 57.376 40.909 0.00 0.00 0.00 2.74
1579 1684 3.498774 AGACTTTGCCATGAGTTCAGT 57.501 42.857 0.00 0.00 0.00 3.41
1596 1701 4.020128 AGTTGGGTTCATCCTCTACAAGAC 60.020 45.833 0.00 0.00 36.25 3.01
1654 1759 8.184304 ACTAATCCTGACAGTTATATCACTCC 57.816 38.462 0.93 0.00 0.00 3.85
1665 1770 6.426646 AAGTCTGAAACTAATCCTGACAGT 57.573 37.500 0.93 0.00 37.17 3.55
1689 1794 6.539649 TCTGTTCGTTAAGATGAAAACTGG 57.460 37.500 0.00 0.00 32.82 4.00
1785 1893 6.005823 TGTATGATTGCTGAATGGATAAGGG 58.994 40.000 0.00 0.00 0.00 3.95
1868 2003 8.915036 CCTTTATTGACTATGGACACTAGTAGT 58.085 37.037 0.00 0.00 29.67 2.73
1925 2062 7.094762 TGCGTACTGATAGATGTATTCGATCTT 60.095 37.037 0.00 0.00 37.37 2.40
1931 2068 8.520835 TGAATTGCGTACTGATAGATGTATTC 57.479 34.615 0.00 0.00 0.00 1.75
1934 2071 7.043656 CGTTTGAATTGCGTACTGATAGATGTA 60.044 37.037 0.00 0.00 0.00 2.29
1943 2080 1.196808 AGCCGTTTGAATTGCGTACTG 59.803 47.619 0.00 0.00 0.00 2.74
1958 2095 4.995487 AGAAAGATCTAAAAACGAAGCCGT 59.005 37.500 0.00 0.00 42.16 5.68
1974 2111 8.777578 ACCCCTAACAAAACTTAAAGAAAGAT 57.222 30.769 0.00 0.00 38.67 2.40
1976 2113 9.661563 AAAACCCCTAACAAAACTTAAAGAAAG 57.338 29.630 0.00 0.00 41.33 2.62
1980 2117 8.780846 ACAAAAACCCCTAACAAAACTTAAAG 57.219 30.769 0.00 0.00 0.00 1.85
1984 2121 5.486063 AGGACAAAAACCCCTAACAAAACTT 59.514 36.000 0.00 0.00 0.00 2.66
2007 2145 6.272318 GTCACTATCTCAACTTCCTGATCAG 58.728 44.000 16.24 16.24 0.00 2.90
2009 2147 5.277825 CGTCACTATCTCAACTTCCTGATC 58.722 45.833 0.00 0.00 0.00 2.92
2010 2148 4.098654 CCGTCACTATCTCAACTTCCTGAT 59.901 45.833 0.00 0.00 0.00 2.90
2018 2156 2.685897 AGAGAGCCGTCACTATCTCAAC 59.314 50.000 4.09 0.00 40.53 3.18
2020 2158 2.092914 TCAGAGAGCCGTCACTATCTCA 60.093 50.000 4.09 0.00 40.53 3.27
2021 2159 2.566913 TCAGAGAGCCGTCACTATCTC 58.433 52.381 0.00 0.00 36.10 2.75
2025 2163 2.491675 TCTTCAGAGAGCCGTCACTA 57.508 50.000 0.00 0.00 0.00 2.74
2026 2164 1.846007 ATCTTCAGAGAGCCGTCACT 58.154 50.000 0.00 0.00 34.85 3.41
2028 2166 4.801330 TTTTATCTTCAGAGAGCCGTCA 57.199 40.909 0.00 0.00 34.85 4.35
2030 2168 6.127026 ACCTTATTTTATCTTCAGAGAGCCGT 60.127 38.462 0.00 0.00 34.85 5.68
2033 2171 8.956533 AGAACCTTATTTTATCTTCAGAGAGC 57.043 34.615 0.00 0.00 34.85 4.09
2046 2185 7.289084 TGGGCTAGACAAAAAGAACCTTATTTT 59.711 33.333 0.00 0.00 33.46 1.82
2056 2195 5.221422 CCAAAACATGGGCTAGACAAAAAGA 60.221 40.000 0.00 0.00 46.27 2.52
2070 2209 6.722225 GCTAGACGCATCACCAAAACATGG 62.722 50.000 0.00 0.00 46.65 3.66
2071 2210 2.995466 AGACGCATCACCAAAACATG 57.005 45.000 0.00 0.00 0.00 3.21
2072 2211 2.420022 GCTAGACGCATCACCAAAACAT 59.580 45.455 0.00 0.00 38.92 2.71
2073 2212 1.804151 GCTAGACGCATCACCAAAACA 59.196 47.619 0.00 0.00 38.92 2.83
2074 2213 1.804151 TGCTAGACGCATCACCAAAAC 59.196 47.619 0.00 0.00 45.47 2.43
2101 2240 3.192466 AGACACACCTTCACACGTTTAC 58.808 45.455 0.00 0.00 0.00 2.01
2104 2243 1.472728 GGAGACACACCTTCACACGTT 60.473 52.381 0.00 0.00 0.00 3.99
2105 2244 0.104304 GGAGACACACCTTCACACGT 59.896 55.000 0.00 0.00 0.00 4.49
2112 2251 1.194781 ATCCAGCGGAGACACACCTT 61.195 55.000 3.76 0.00 34.05 3.50
2123 2262 2.487934 CACCAAAGATAGATCCAGCGG 58.512 52.381 0.00 0.00 0.00 5.52
2125 2264 3.845781 TCCACCAAAGATAGATCCAGC 57.154 47.619 0.00 0.00 0.00 4.85
2143 2282 2.044123 AGCGTTGATTGGAAGGATCC 57.956 50.000 2.48 2.48 46.76 3.36
2144 2283 3.798202 AGTAGCGTTGATTGGAAGGATC 58.202 45.455 0.00 0.00 0.00 3.36
2145 2284 3.452627 AGAGTAGCGTTGATTGGAAGGAT 59.547 43.478 0.00 0.00 0.00 3.24
2146 2285 2.832129 AGAGTAGCGTTGATTGGAAGGA 59.168 45.455 0.00 0.00 0.00 3.36
2147 2286 3.252974 AGAGTAGCGTTGATTGGAAGG 57.747 47.619 0.00 0.00 0.00 3.46
2148 2287 6.291849 CGATAAAGAGTAGCGTTGATTGGAAG 60.292 42.308 0.00 0.00 0.00 3.46
2149 2288 5.518847 CGATAAAGAGTAGCGTTGATTGGAA 59.481 40.000 0.00 0.00 0.00 3.53
2150 2289 5.041287 CGATAAAGAGTAGCGTTGATTGGA 58.959 41.667 0.00 0.00 0.00 3.53
2151 2290 4.209288 CCGATAAAGAGTAGCGTTGATTGG 59.791 45.833 0.00 0.00 0.00 3.16
2152 2291 4.318121 GCCGATAAAGAGTAGCGTTGATTG 60.318 45.833 0.00 0.00 0.00 2.67
2153 2292 3.802685 GCCGATAAAGAGTAGCGTTGATT 59.197 43.478 0.00 0.00 0.00 2.57
2154 2293 3.381949 GCCGATAAAGAGTAGCGTTGAT 58.618 45.455 0.00 0.00 0.00 2.57
2155 2294 2.793585 CGCCGATAAAGAGTAGCGTTGA 60.794 50.000 0.00 0.00 38.81 3.18
2156 2295 1.517276 CGCCGATAAAGAGTAGCGTTG 59.483 52.381 0.00 0.00 38.81 4.10
2157 2296 1.535437 CCGCCGATAAAGAGTAGCGTT 60.535 52.381 0.00 0.00 41.87 4.84
2158 2297 0.030369 CCGCCGATAAAGAGTAGCGT 59.970 55.000 0.00 0.00 41.87 5.07
2159 2298 1.276145 GCCGCCGATAAAGAGTAGCG 61.276 60.000 0.00 0.00 42.99 4.26
2160 2299 1.276145 CGCCGCCGATAAAGAGTAGC 61.276 60.000 0.00 0.00 36.29 3.58
2161 2300 0.663568 CCGCCGCCGATAAAGAGTAG 60.664 60.000 0.00 0.00 36.29 2.57
2162 2301 1.361271 CCGCCGCCGATAAAGAGTA 59.639 57.895 0.00 0.00 36.29 2.59
2163 2302 2.106332 CCGCCGCCGATAAAGAGT 59.894 61.111 0.00 0.00 36.29 3.24
2164 2303 1.520787 AACCGCCGCCGATAAAGAG 60.521 57.895 0.00 0.00 36.29 2.85
2165 2304 1.812093 CAACCGCCGCCGATAAAGA 60.812 57.895 0.00 0.00 36.29 2.52
2166 2305 2.707039 CAACCGCCGCCGATAAAG 59.293 61.111 0.00 0.00 36.29 1.85
2167 2306 3.501548 GCAACCGCCGCCGATAAA 61.502 61.111 0.00 0.00 36.29 1.40
2168 2307 4.460683 AGCAACCGCCGCCGATAA 62.461 61.111 0.00 0.00 39.83 1.75
2175 2314 4.705519 CCAAAGCAGCAACCGCCG 62.706 66.667 0.00 0.00 39.83 6.46
2176 2315 3.605664 ACCAAAGCAGCAACCGCC 61.606 61.111 0.00 0.00 39.83 6.13
2177 2316 2.355009 CACCAAAGCAGCAACCGC 60.355 61.111 0.00 0.00 38.99 5.68
2178 2317 2.355009 GCACCAAAGCAGCAACCG 60.355 61.111 0.00 0.00 0.00 4.44
2179 2318 2.355009 CGCACCAAAGCAGCAACC 60.355 61.111 0.00 0.00 0.00 3.77
2180 2319 3.032033 GCGCACCAAAGCAGCAAC 61.032 61.111 0.30 0.00 35.30 4.17
2181 2320 3.218470 AGCGCACCAAAGCAGCAA 61.218 55.556 11.47 0.00 36.81 3.91
2182 2321 3.968568 CAGCGCACCAAAGCAGCA 61.969 61.111 11.47 0.00 36.81 4.41
2183 2322 4.712425 CCAGCGCACCAAAGCAGC 62.712 66.667 11.47 0.00 35.38 5.25
2184 2323 3.259425 GACCAGCGCACCAAAGCAG 62.259 63.158 11.47 0.00 35.48 4.24
2185 2324 3.286751 GACCAGCGCACCAAAGCA 61.287 61.111 11.47 0.00 35.48 3.91
2186 2325 1.234615 TAAGACCAGCGCACCAAAGC 61.235 55.000 11.47 0.00 0.00 3.51
2187 2326 1.453155 ATAAGACCAGCGCACCAAAG 58.547 50.000 11.47 0.00 0.00 2.77
2188 2327 2.772077 TATAAGACCAGCGCACCAAA 57.228 45.000 11.47 0.00 0.00 3.28
2189 2328 2.772077 TTATAAGACCAGCGCACCAA 57.228 45.000 11.47 0.00 0.00 3.67
2190 2329 2.560504 CATTATAAGACCAGCGCACCA 58.439 47.619 11.47 0.00 0.00 4.17
2191 2330 1.264288 GCATTATAAGACCAGCGCACC 59.736 52.381 11.47 0.00 0.00 5.01
2192 2331 2.213499 AGCATTATAAGACCAGCGCAC 58.787 47.619 11.47 0.00 0.00 5.34
2193 2332 2.620251 AGCATTATAAGACCAGCGCA 57.380 45.000 11.47 0.00 0.00 6.09
2194 2333 3.971032 AAAGCATTATAAGACCAGCGC 57.029 42.857 0.00 0.00 0.00 5.92
2195 2334 5.023551 GCTAAAGCATTATAAGACCAGCG 57.976 43.478 0.00 0.00 41.59 5.18
2210 2349 4.492294 GTCGAAAAATCGTCATGCTAAAGC 59.508 41.667 0.00 0.00 42.50 3.51
2211 2350 5.729883 CAGTCGAAAAATCGTCATGCTAAAG 59.270 40.000 0.00 0.00 0.00 1.85
2212 2351 5.178623 ACAGTCGAAAAATCGTCATGCTAAA 59.821 36.000 0.00 0.00 0.00 1.85
2213 2352 4.688879 ACAGTCGAAAAATCGTCATGCTAA 59.311 37.500 0.00 0.00 0.00 3.09
2214 2353 4.242475 ACAGTCGAAAAATCGTCATGCTA 58.758 39.130 0.00 0.00 0.00 3.49
2215 2354 3.067106 ACAGTCGAAAAATCGTCATGCT 58.933 40.909 0.00 0.00 0.00 3.79
2216 2355 3.123621 AGACAGTCGAAAAATCGTCATGC 59.876 43.478 0.00 0.00 0.00 4.06
2217 2356 4.910746 AGACAGTCGAAAAATCGTCATG 57.089 40.909 0.00 0.00 0.00 3.07
2218 2357 5.710984 AGTAGACAGTCGAAAAATCGTCAT 58.289 37.500 0.00 0.00 0.00 3.06
2219 2358 5.117355 AGTAGACAGTCGAAAAATCGTCA 57.883 39.130 0.00 0.00 0.00 4.35
2220 2359 6.082338 TGTAGTAGACAGTCGAAAAATCGTC 58.918 40.000 0.00 0.00 32.86 4.20
2221 2360 6.005583 TGTAGTAGACAGTCGAAAAATCGT 57.994 37.500 0.00 0.00 32.86 3.73
2222 2361 6.922980 TTGTAGTAGACAGTCGAAAAATCG 57.077 37.500 0.00 0.00 39.88 3.34
2224 2363 9.924650 ACTTATTGTAGTAGACAGTCGAAAAAT 57.075 29.630 0.00 0.00 39.88 1.82
2225 2364 9.754382 AACTTATTGTAGTAGACAGTCGAAAAA 57.246 29.630 0.00 0.00 39.88 1.94
2226 2365 9.754382 AAACTTATTGTAGTAGACAGTCGAAAA 57.246 29.630 0.00 0.00 39.88 2.29
2227 2366 9.754382 AAAACTTATTGTAGTAGACAGTCGAAA 57.246 29.630 0.00 0.00 39.88 3.46
2228 2367 9.188588 CAAAACTTATTGTAGTAGACAGTCGAA 57.811 33.333 0.00 0.00 39.88 3.71
2229 2368 8.355169 ACAAAACTTATTGTAGTAGACAGTCGA 58.645 33.333 0.00 0.00 41.56 4.20
2230 2369 8.516811 ACAAAACTTATTGTAGTAGACAGTCG 57.483 34.615 0.00 0.00 41.56 4.18
2231 2370 8.923683 GGACAAAACTTATTGTAGTAGACAGTC 58.076 37.037 0.00 0.00 43.31 3.51
2232 2371 7.597743 CGGACAAAACTTATTGTAGTAGACAGT 59.402 37.037 0.00 0.00 43.31 3.55
2233 2372 7.063074 CCGGACAAAACTTATTGTAGTAGACAG 59.937 40.741 0.00 0.00 43.31 3.51
2234 2373 6.869913 CCGGACAAAACTTATTGTAGTAGACA 59.130 38.462 0.00 0.00 43.31 3.41
2235 2374 6.183360 GCCGGACAAAACTTATTGTAGTAGAC 60.183 42.308 5.05 0.00 43.31 2.59
2236 2375 5.870978 GCCGGACAAAACTTATTGTAGTAGA 59.129 40.000 5.05 0.00 43.31 2.59
2237 2376 5.873164 AGCCGGACAAAACTTATTGTAGTAG 59.127 40.000 5.05 0.00 43.31 2.57
2238 2377 5.797051 AGCCGGACAAAACTTATTGTAGTA 58.203 37.500 5.05 0.00 43.31 1.82
2239 2378 4.648651 AGCCGGACAAAACTTATTGTAGT 58.351 39.130 5.05 0.00 43.31 2.73
2240 2379 4.935808 AGAGCCGGACAAAACTTATTGTAG 59.064 41.667 5.05 0.00 43.31 2.74
2241 2380 4.693566 CAGAGCCGGACAAAACTTATTGTA 59.306 41.667 5.05 0.00 43.31 2.41
2242 2381 3.502211 CAGAGCCGGACAAAACTTATTGT 59.498 43.478 5.05 0.00 45.82 2.71
2243 2382 3.119849 CCAGAGCCGGACAAAACTTATTG 60.120 47.826 5.05 0.00 36.37 1.90
2244 2383 3.081804 CCAGAGCCGGACAAAACTTATT 58.918 45.455 5.05 0.00 0.00 1.40
2245 2384 2.039879 ACCAGAGCCGGACAAAACTTAT 59.960 45.455 5.05 0.00 0.00 1.73
2246 2385 1.418637 ACCAGAGCCGGACAAAACTTA 59.581 47.619 5.05 0.00 0.00 2.24
2247 2386 0.182775 ACCAGAGCCGGACAAAACTT 59.817 50.000 5.05 0.00 0.00 2.66
2248 2387 0.535102 CACCAGAGCCGGACAAAACT 60.535 55.000 5.05 0.00 0.00 2.66
2249 2388 0.534203 TCACCAGAGCCGGACAAAAC 60.534 55.000 5.05 0.00 0.00 2.43
2250 2389 0.400213 ATCACCAGAGCCGGACAAAA 59.600 50.000 5.05 0.00 0.00 2.44
2251 2390 0.321564 CATCACCAGAGCCGGACAAA 60.322 55.000 5.05 0.00 0.00 2.83
2252 2391 1.296392 CATCACCAGAGCCGGACAA 59.704 57.895 5.05 0.00 0.00 3.18
2253 2392 0.613572 TACATCACCAGAGCCGGACA 60.614 55.000 5.05 0.00 0.00 4.02
2254 2393 0.103208 CTACATCACCAGAGCCGGAC 59.897 60.000 5.05 0.00 0.00 4.79
2255 2394 1.043116 CCTACATCACCAGAGCCGGA 61.043 60.000 5.05 0.00 0.00 5.14
2256 2395 1.443407 CCTACATCACCAGAGCCGG 59.557 63.158 0.00 0.00 0.00 6.13
2257 2396 1.443407 CCCTACATCACCAGAGCCG 59.557 63.158 0.00 0.00 0.00 5.52
2258 2397 1.832912 CCCCTACATCACCAGAGCC 59.167 63.158 0.00 0.00 0.00 4.70
2259 2398 1.147153 GCCCCTACATCACCAGAGC 59.853 63.158 0.00 0.00 0.00 4.09
2260 2399 1.043116 TCGCCCCTACATCACCAGAG 61.043 60.000 0.00 0.00 0.00 3.35
2261 2400 0.398522 ATCGCCCCTACATCACCAGA 60.399 55.000 0.00 0.00 0.00 3.86
2262 2401 0.250038 CATCGCCCCTACATCACCAG 60.250 60.000 0.00 0.00 0.00 4.00
2263 2402 0.689412 TCATCGCCCCTACATCACCA 60.689 55.000 0.00 0.00 0.00 4.17
2264 2403 0.249911 GTCATCGCCCCTACATCACC 60.250 60.000 0.00 0.00 0.00 4.02
2265 2404 0.597637 CGTCATCGCCCCTACATCAC 60.598 60.000 0.00 0.00 0.00 3.06
2266 2405 1.739667 CGTCATCGCCCCTACATCA 59.260 57.895 0.00 0.00 0.00 3.07
2267 2406 1.006102 CCGTCATCGCCCCTACATC 60.006 63.158 0.00 0.00 35.54 3.06
2268 2407 3.138625 CCGTCATCGCCCCTACAT 58.861 61.111 0.00 0.00 35.54 2.29
2269 2408 3.845259 GCCGTCATCGCCCCTACA 61.845 66.667 0.00 0.00 35.54 2.74
2270 2409 4.944372 CGCCGTCATCGCCCCTAC 62.944 72.222 0.00 0.00 35.54 3.18
2294 2433 0.246086 AGCACTGAAGAGAGCCGAAG 59.754 55.000 0.00 0.00 36.52 3.79
2295 2434 0.681733 AAGCACTGAAGAGAGCCGAA 59.318 50.000 0.00 0.00 36.52 4.30
2296 2435 0.244994 GAAGCACTGAAGAGAGCCGA 59.755 55.000 0.00 0.00 36.52 5.54
2297 2436 0.246086 AGAAGCACTGAAGAGAGCCG 59.754 55.000 0.00 0.00 36.52 5.52
2298 2437 2.495669 ACTAGAAGCACTGAAGAGAGCC 59.504 50.000 0.00 0.00 36.52 4.70
2299 2438 3.769536 GACTAGAAGCACTGAAGAGAGC 58.230 50.000 0.00 0.00 36.14 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.