Multiple sequence alignment - TraesCS3D01G340900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G340900 chr3D 100.000 3548 0 0 1 3548 454497040 454500587 0.000000e+00 6553.0
1 TraesCS3D01G340900 chr3B 91.585 2151 149 23 752 2889 597045786 597047917 0.000000e+00 2940.0
2 TraesCS3D01G340900 chr3B 86.294 591 52 12 1 583 597045078 597045647 1.810000e-172 616.0
3 TraesCS3D01G340900 chr3B 93.578 327 19 2 2887 3212 447290370 447290045 1.480000e-133 486.0
4 TraesCS3D01G340900 chr3B 93.355 301 16 2 3210 3510 597047915 597048211 3.250000e-120 442.0
5 TraesCS3D01G340900 chr3A 88.597 2473 180 47 388 2802 596499056 596501484 0.000000e+00 2911.0
6 TraesCS3D01G340900 chr3A 95.210 334 15 1 1 333 596498701 596499034 8.720000e-146 527.0
7 TraesCS3D01G340900 chr3A 94.395 339 15 2 3210 3548 596501638 596501972 5.250000e-143 518.0
8 TraesCS3D01G340900 chr3A 94.118 102 6 0 2788 2889 596501539 596501640 4.740000e-34 156.0
9 TraesCS3D01G340900 chr7D 94.495 327 16 2 2889 3214 126890003 126890328 1.470000e-138 503.0
10 TraesCS3D01G340900 chr5A 93.921 329 18 2 2887 3214 374886162 374885835 2.460000e-136 496.0
11 TraesCS3D01G340900 chr5A 93.884 327 18 2 2887 3212 228892577 228892252 3.180000e-135 492.0
12 TraesCS3D01G340900 chr5A 100.000 29 0 0 1249 1277 439461091 439461063 2.000000e-03 54.7
13 TraesCS3D01G340900 chr5A 100.000 29 0 0 1249 1277 621012104 621012132 2.000000e-03 54.7
14 TraesCS3D01G340900 chr4B 93.884 327 18 2 2887 3212 37726675 37726350 3.180000e-135 492.0
15 TraesCS3D01G340900 chr4B 93.030 330 23 0 2887 3216 373785264 373784935 1.920000e-132 483.0
16 TraesCS3D01G340900 chr4B 100.000 28 0 0 1249 1276 72891641 72891668 6.000000e-03 52.8
17 TraesCS3D01G340900 chr2A 94.118 323 17 2 2889 3210 493336592 493336271 1.140000e-134 490.0
18 TraesCS3D01G340900 chr2A 94.444 36 1 1 1242 1277 36236962 36236996 2.000000e-03 54.7
19 TraesCS3D01G340900 chr2A 100.000 28 0 0 1249 1276 514581870 514581843 6.000000e-03 52.8
20 TraesCS3D01G340900 chr7B 93.353 331 19 3 2887 3216 680209670 680209998 1.480000e-133 486.0
21 TraesCS3D01G340900 chr7B 100.000 28 0 0 1249 1276 745444510 745444537 6.000000e-03 52.8
22 TraesCS3D01G340900 chr6A 93.051 331 21 2 2885 3214 474329070 474328741 1.920000e-132 483.0
23 TraesCS3D01G340900 chr6B 100.000 29 0 0 1249 1277 252384 252412 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G340900 chr3D 454497040 454500587 3547 False 6553.000000 6553 100.000000 1 3548 1 chr3D.!!$F1 3547
1 TraesCS3D01G340900 chr3B 597045078 597048211 3133 False 1332.666667 2940 90.411333 1 3510 3 chr3B.!!$F1 3509
2 TraesCS3D01G340900 chr3A 596498701 596501972 3271 False 1028.000000 2911 93.080000 1 3548 4 chr3A.!!$F1 3547

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
522 545 0.038166 TGCGGATCCTTTTTCTGCCT 59.962 50.0 10.75 0.0 43.45 4.75 F
1158 1222 0.179097 GACGGCTTCTGGATGTCCTC 60.179 60.0 0.09 0.0 36.82 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1659 1723 0.108662 TGCACTCCATGTACTGCGAG 60.109 55.0 0.00 0.00 0.0 5.03 R
3108 3258 0.031449 GAAAGCGGGATCCTCTCGAG 59.969 60.0 12.58 5.93 44.6 4.04 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
89 91 4.907034 CGGCGCGCTACTGACGAT 62.907 66.667 32.29 0.00 0.00 3.73
91 93 3.977568 GCGCGCTACTGACGATGC 61.978 66.667 26.67 0.00 0.00 3.91
128 130 2.100087 TGACTGCTATACCATTCGCGAA 59.900 45.455 25.66 25.66 0.00 4.70
188 190 2.390599 CGTTGGTGCGGGTCAGATG 61.391 63.158 0.00 0.00 0.00 2.90
250 252 3.181465 ACTCAACAGAACCAGTTCATCGT 60.181 43.478 12.76 4.28 41.84 3.73
258 260 1.227263 CAGTTCATCGTAGGCCCGG 60.227 63.158 0.00 0.00 0.00 5.73
283 285 2.571548 CCCCCTCATTCTGTTGTGC 58.428 57.895 0.00 0.00 0.00 4.57
284 286 0.967380 CCCCCTCATTCTGTTGTGCC 60.967 60.000 0.00 0.00 0.00 5.01
341 353 4.525686 GATGATCAATCGAGCAGCTTTTC 58.474 43.478 0.00 0.00 41.72 2.29
346 358 1.078759 ATCGAGCAGCTTTTCGTCCG 61.079 55.000 14.30 0.00 37.99 4.79
358 370 0.828762 TTCGTCCGGTTCTTCCTGGA 60.829 55.000 0.00 0.00 36.86 3.86
371 383 5.613698 TCTTCCTGGATGATCCTCTATCT 57.386 43.478 13.44 0.00 37.46 1.98
385 397 4.544152 TCCTCTATCTGGTTGGGGATTTTT 59.456 41.667 0.00 0.00 0.00 1.94
399 411 3.487544 GGGATTTTTCTTCGATCGGCTTG 60.488 47.826 16.41 3.40 0.00 4.01
432 444 3.055530 AGGTATGTTCAGTTCTGCTCCAG 60.056 47.826 0.00 0.00 0.00 3.86
437 449 0.319900 TCAGTTCTGCTCCAGTTCGC 60.320 55.000 0.00 0.00 32.61 4.70
470 492 7.577303 TCTGTTCTTAGGCTTATGAATTGGAT 58.423 34.615 7.33 0.00 0.00 3.41
472 494 6.547141 TGTTCTTAGGCTTATGAATTGGATGG 59.453 38.462 7.33 0.00 0.00 3.51
473 495 6.514012 TCTTAGGCTTATGAATTGGATGGA 57.486 37.500 0.00 0.00 0.00 3.41
476 498 4.210331 AGGCTTATGAATTGGATGGACAC 58.790 43.478 0.00 0.00 0.00 3.67
477 499 3.319122 GGCTTATGAATTGGATGGACACC 59.681 47.826 0.00 0.00 0.00 4.16
478 500 3.953612 GCTTATGAATTGGATGGACACCA 59.046 43.478 0.00 0.00 38.19 4.17
495 518 1.636988 CCATCTTGGTACGGACGTTC 58.363 55.000 1.57 0.00 31.35 3.95
508 531 1.286354 GACGTTCGATTTGGTGCGGA 61.286 55.000 0.00 0.00 0.00 5.54
516 539 2.094752 CGATTTGGTGCGGATCCTTTTT 60.095 45.455 10.75 0.00 0.00 1.94
518 541 2.286365 TTGGTGCGGATCCTTTTTCT 57.714 45.000 10.75 0.00 0.00 2.52
519 542 1.533625 TGGTGCGGATCCTTTTTCTG 58.466 50.000 10.75 0.00 0.00 3.02
521 544 0.171231 GTGCGGATCCTTTTTCTGCC 59.829 55.000 10.75 0.00 43.45 4.85
522 545 0.038166 TGCGGATCCTTTTTCTGCCT 59.962 50.000 10.75 0.00 43.45 4.75
523 546 1.280710 TGCGGATCCTTTTTCTGCCTA 59.719 47.619 10.75 0.00 43.45 3.93
524 547 2.092429 TGCGGATCCTTTTTCTGCCTAT 60.092 45.455 10.75 0.00 43.45 2.57
525 548 2.291741 GCGGATCCTTTTTCTGCCTATG 59.708 50.000 10.75 0.00 39.16 2.23
539 562 2.951642 TGCCTATGTATGCTTTTGAGGC 59.048 45.455 3.04 3.04 46.63 4.70
555 578 4.744795 TGAGGCTCAGAAGAGGAAATAC 57.255 45.455 14.43 0.00 42.33 1.89
587 612 7.173218 ACGACAAAGAAATCTCATACATGTTGT 59.827 33.333 2.30 0.00 0.00 3.32
588 613 8.655970 CGACAAAGAAATCTCATACATGTTGTA 58.344 33.333 2.30 0.00 37.24 2.41
603 630 2.952978 TGTTGTATGTTGGCGGTTTCTT 59.047 40.909 0.00 0.00 0.00 2.52
619 646 6.668323 CGGTTTCTTCACAACTGAATATGTT 58.332 36.000 0.00 0.00 35.78 2.71
620 647 7.138736 CGGTTTCTTCACAACTGAATATGTTT 58.861 34.615 0.00 0.00 35.78 2.83
629 656 9.342308 TCACAACTGAATATGTTTTTCTCTTCT 57.658 29.630 0.00 0.00 0.00 2.85
660 687 5.613358 AGATTTCTGAGACGCGAAATTTT 57.387 34.783 15.93 0.00 39.29 1.82
665 692 1.533731 TGAGACGCGAAATTTTCCACC 59.466 47.619 15.93 0.00 0.00 4.61
667 694 2.225727 GAGACGCGAAATTTTCCACCTT 59.774 45.455 15.93 0.00 0.00 3.50
671 698 3.057806 ACGCGAAATTTTCCACCTTTAGG 60.058 43.478 15.93 0.00 42.17 2.69
679 706 6.715347 ATTTTCCACCTTTAGGACATATGC 57.285 37.500 1.58 0.00 38.94 3.14
681 708 5.450818 TTCCACCTTTAGGACATATGCTT 57.549 39.130 1.58 0.00 38.94 3.91
686 713 5.418840 CACCTTTAGGACATATGCTTGGTTT 59.581 40.000 1.58 0.00 38.94 3.27
699 726 9.403110 CATATGCTTGGTTTATTAAGAATCTGC 57.597 33.333 0.00 0.00 0.00 4.26
700 727 6.832520 TGCTTGGTTTATTAAGAATCTGCA 57.167 33.333 0.00 0.00 0.00 4.41
711 738 1.696336 AGAATCTGCAGTGGTCAGTGT 59.304 47.619 14.67 0.00 34.32 3.55
712 739 2.105477 AGAATCTGCAGTGGTCAGTGTT 59.895 45.455 14.67 0.00 34.32 3.32
714 741 1.123077 TCTGCAGTGGTCAGTGTTCT 58.877 50.000 14.67 0.00 34.32 3.01
715 742 2.316108 TCTGCAGTGGTCAGTGTTCTA 58.684 47.619 14.67 0.00 34.32 2.10
716 743 2.035961 TCTGCAGTGGTCAGTGTTCTAC 59.964 50.000 14.67 0.00 34.32 2.59
718 745 2.434336 TGCAGTGGTCAGTGTTCTACTT 59.566 45.455 7.52 0.00 37.60 2.24
721 748 4.302455 CAGTGGTCAGTGTTCTACTTCTG 58.698 47.826 4.93 0.00 37.60 3.02
722 749 4.038042 CAGTGGTCAGTGTTCTACTTCTGA 59.962 45.833 4.93 0.00 37.60 3.27
723 750 4.649674 AGTGGTCAGTGTTCTACTTCTGAA 59.350 41.667 0.00 0.00 37.60 3.02
725 752 5.992217 GTGGTCAGTGTTCTACTTCTGAATT 59.008 40.000 0.00 0.00 37.60 2.17
726 753 6.146347 GTGGTCAGTGTTCTACTTCTGAATTC 59.854 42.308 0.00 0.00 37.60 2.17
727 754 5.639931 GGTCAGTGTTCTACTTCTGAATTCC 59.360 44.000 2.27 0.00 37.60 3.01
729 756 6.706270 GTCAGTGTTCTACTTCTGAATTCCAA 59.294 38.462 2.27 0.00 37.60 3.53
731 758 7.388776 TCAGTGTTCTACTTCTGAATTCCAATG 59.611 37.037 2.27 0.00 37.60 2.82
746 787 9.153721 TGAATTCCAATGAAGAACAATATTTGC 57.846 29.630 2.27 0.00 33.05 3.68
748 794 6.507958 TCCAATGAAGAACAATATTTGCGA 57.492 33.333 0.00 0.00 0.00 5.10
750 796 5.227805 CCAATGAAGAACAATATTTGCGACG 59.772 40.000 0.00 0.00 0.00 5.12
754 800 7.067532 TGAAGAACAATATTTGCGACGTAAT 57.932 32.000 0.00 1.19 0.00 1.89
785 833 9.252962 GATTTGGAGAATTTGCTAATACATTGG 57.747 33.333 0.00 0.00 0.00 3.16
787 835 8.537728 TTGGAGAATTTGCTAATACATTGGAT 57.462 30.769 0.00 0.00 0.00 3.41
802 850 4.159135 ACATTGGATTGCTCACTGGATTTC 59.841 41.667 0.00 0.00 0.00 2.17
804 852 3.349927 TGGATTGCTCACTGGATTTCTG 58.650 45.455 0.00 0.00 0.00 3.02
809 857 4.025040 TGCTCACTGGATTTCTGTCAAT 57.975 40.909 0.00 0.00 0.00 2.57
811 859 5.181009 TGCTCACTGGATTTCTGTCAATAG 58.819 41.667 0.00 0.00 0.00 1.73
818 867 6.541641 ACTGGATTTCTGTCAATAGCTTCATC 59.458 38.462 0.00 0.00 0.00 2.92
823 872 5.883685 TCTGTCAATAGCTTCATCCTCAT 57.116 39.130 0.00 0.00 0.00 2.90
835 884 7.403671 AGCTTCATCCTCATATGCATATTTCT 58.596 34.615 16.71 0.00 0.00 2.52
842 891 5.122869 CCTCATATGCATATTTCTGGTTCCG 59.877 44.000 16.71 2.10 0.00 4.30
855 915 4.529897 TCTGGTTCCGCTAGTACTTGATA 58.470 43.478 8.60 0.00 0.00 2.15
859 919 4.038883 GGTTCCGCTAGTACTTGATACCAT 59.961 45.833 8.60 0.00 33.85 3.55
867 927 7.328737 CGCTAGTACTTGATACCATAAATCCAC 59.671 40.741 8.60 0.00 33.85 4.02
874 934 5.364778 TGATACCATAAATCCACGGTTCTG 58.635 41.667 0.00 0.00 32.81 3.02
880 940 0.613777 AATCCACGGTTCTGACCCTC 59.386 55.000 0.00 0.00 43.42 4.30
887 947 2.037381 ACGGTTCTGACCCTCTCTTTTC 59.963 50.000 0.00 0.00 43.42 2.29
889 949 3.669536 GGTTCTGACCCTCTCTTTTCTG 58.330 50.000 0.00 0.00 40.25 3.02
890 950 3.071747 GGTTCTGACCCTCTCTTTTCTGT 59.928 47.826 0.00 0.00 40.25 3.41
891 951 4.283722 GGTTCTGACCCTCTCTTTTCTGTA 59.716 45.833 0.00 0.00 40.25 2.74
892 952 5.231702 GTTCTGACCCTCTCTTTTCTGTAC 58.768 45.833 0.00 0.00 0.00 2.90
897 957 5.221661 TGACCCTCTCTTTTCTGTACCTTTC 60.222 44.000 0.00 0.00 0.00 2.62
923 983 3.893720 CAGAAAGAACGCTGCAATTTCT 58.106 40.909 0.00 6.52 40.01 2.52
929 989 3.066621 AGAACGCTGCAATTTCTTTGACA 59.933 39.130 0.00 0.00 37.53 3.58
937 997 5.522456 TGCAATTTCTTTGACACACATCTC 58.478 37.500 0.00 0.00 37.53 2.75
950 1010 5.319453 ACACACATCTCCAAGTTCATCATT 58.681 37.500 0.00 0.00 0.00 2.57
980 1041 6.256757 GTCTCTGCTCAACCAATAATACAGAC 59.743 42.308 0.00 0.00 0.00 3.51
1011 1072 4.522789 ACACATAAAGAAATGGGTCACACC 59.477 41.667 0.00 0.00 39.29 4.16
1012 1073 4.522405 CACATAAAGAAATGGGTCACACCA 59.478 41.667 0.00 0.00 46.24 4.17
1023 1084 1.317613 GTCACACCATTGGAGTTGCA 58.682 50.000 10.37 0.00 0.00 4.08
1026 1087 2.165167 CACACCATTGGAGTTGCAGAT 58.835 47.619 10.37 0.00 0.00 2.90
1032 1093 3.697542 CCATTGGAGTTGCAGATGATGAA 59.302 43.478 0.00 0.00 0.00 2.57
1037 1098 4.577693 TGGAGTTGCAGATGATGAAATAGC 59.422 41.667 0.00 0.00 0.00 2.97
1048 1109 7.606839 CAGATGATGAAATAGCAGACATACCAT 59.393 37.037 0.00 0.00 0.00 3.55
1074 1138 3.128242 CAGATGCTTCACCAATTCTGACC 59.872 47.826 2.07 0.00 34.00 4.02
1107 1171 1.273098 ACAGTCCCTACCCTTCACGAT 60.273 52.381 0.00 0.00 0.00 3.73
1124 1188 1.322442 GATGGACTAATGCAAGGGGC 58.678 55.000 0.00 0.00 45.13 5.80
1153 1217 0.248825 CGAGAGACGGCTTCTGGATG 60.249 60.000 0.00 0.00 38.46 3.51
1158 1222 0.179097 GACGGCTTCTGGATGTCCTC 60.179 60.000 0.09 0.00 36.82 3.71
1205 1269 0.670546 AAGGACATCAACGTCTGCGG 60.671 55.000 0.00 0.00 43.45 5.69
1206 1270 1.374252 GGACATCAACGTCTGCGGT 60.374 57.895 0.00 0.00 43.45 5.68
1476 1540 0.321653 ACAACCAGATCCTCAACGCC 60.322 55.000 0.00 0.00 0.00 5.68
1506 1570 3.404224 CTCATGAGCATCTACCAGCAT 57.596 47.619 10.38 0.00 34.92 3.79
1659 1723 1.448540 CCTCCACGTCACCTGCATC 60.449 63.158 0.00 0.00 0.00 3.91
1811 1875 2.634702 CTAGGCAGAGACGACGACGC 62.635 65.000 7.30 0.00 43.96 5.19
1880 1956 1.933853 CGAAGAATCGCCGGAAGAAAT 59.066 47.619 5.05 0.00 42.96 2.17
1962 2038 0.456312 CGTGCTACCTGTCGTTCCTC 60.456 60.000 0.00 0.00 0.00 3.71
1968 2044 1.374758 CCTGTCGTTCCTCTGCACC 60.375 63.158 0.00 0.00 0.00 5.01
2001 2077 2.046023 TGGAACATGGAGCGGCTG 60.046 61.111 7.50 0.00 0.00 4.85
2028 2104 1.605500 GCAACATGTACATGCACACG 58.394 50.000 31.19 17.62 42.39 4.49
2151 2227 2.125350 GTGCTCTGCTTCCTCGGG 60.125 66.667 0.00 0.00 0.00 5.14
2163 2239 3.528370 CTCGGGCTCCTGTACGGG 61.528 72.222 15.21 15.21 0.00 5.28
2178 2254 2.922234 GGGGGCTTCTGGAGGATG 59.078 66.667 0.00 0.00 0.00 3.51
2312 2388 2.256158 CACGGCGAACCTGTACGA 59.744 61.111 16.62 0.00 0.00 3.43
2315 2391 2.125793 GGCGAACCTGTACGACCC 60.126 66.667 0.00 0.00 0.00 4.46
2397 2473 4.373116 GTGCCGGTCTCCGCTGAA 62.373 66.667 1.90 0.00 46.86 3.02
2408 2484 2.345244 CGCTGAAGTGCAGGAGGT 59.655 61.111 0.00 0.00 45.03 3.85
2410 2486 1.673665 GCTGAAGTGCAGGAGGTGG 60.674 63.158 0.00 0.00 45.03 4.61
2414 2490 2.788191 GAAGTGCAGGAGGTGGTCGG 62.788 65.000 0.00 0.00 0.00 4.79
2421 2497 4.309950 GAGGTGGTCGGCGGTGTT 62.310 66.667 7.21 0.00 0.00 3.32
2425 2501 3.851128 TGGTCGGCGGTGTTGTCA 61.851 61.111 7.21 0.00 0.00 3.58
2429 2505 1.669760 TCGGCGGTGTTGTCAATCC 60.670 57.895 7.21 0.00 0.00 3.01
2430 2506 2.867472 GGCGGTGTTGTCAATCCG 59.133 61.111 20.43 20.43 44.86 4.18
2431 2507 1.669760 GGCGGTGTTGTCAATCCGA 60.670 57.895 25.60 0.00 44.86 4.55
2460 2536 2.029666 GAGATGATCCCGCCCGTG 59.970 66.667 0.00 0.00 0.00 4.94
2556 2632 0.662619 TCAAAAGTTGACCGCAGCTG 59.337 50.000 10.11 10.11 35.61 4.24
2579 2655 2.169144 TGGATGGTGACTGATGCTGTAG 59.831 50.000 0.00 0.00 0.00 2.74
2585 2662 4.711846 TGGTGACTGATGCTGTAGAGTATT 59.288 41.667 0.00 0.00 0.00 1.89
2588 2665 3.971150 ACTGATGCTGTAGAGTATTCGC 58.029 45.455 0.00 0.00 0.00 4.70
2602 2683 2.533266 ATTCGCAAGCTGACGGATAT 57.467 45.000 8.59 0.00 37.18 1.63
2615 2696 7.283329 AGCTGACGGATATATTCTTCCTTTTT 58.717 34.615 0.00 0.00 0.00 1.94
2616 2697 7.227512 AGCTGACGGATATATTCTTCCTTTTTG 59.772 37.037 0.00 0.00 0.00 2.44
2617 2698 7.520614 GCTGACGGATATATTCTTCCTTTTTGG 60.521 40.741 0.00 0.00 37.10 3.28
2674 2755 0.110056 GGTTTGTCATGCTCTGCACG 60.110 55.000 0.00 0.00 43.04 5.34
2689 2770 0.320160 GCACGGGACTTTAGGTCGTT 60.320 55.000 0.00 0.00 45.35 3.85
2690 2771 1.067635 GCACGGGACTTTAGGTCGTTA 60.068 52.381 0.00 0.00 45.35 3.18
2691 2772 2.417787 GCACGGGACTTTAGGTCGTTAT 60.418 50.000 0.00 0.00 45.35 1.89
2692 2773 3.181487 GCACGGGACTTTAGGTCGTTATA 60.181 47.826 0.00 0.00 45.35 0.98
2804 2954 6.346999 CGTTACTGGAAGAAGAAGAAGAAAGC 60.347 42.308 0.00 0.00 37.43 3.51
2850 3000 5.316327 TCCTACTATGACGATGATGATGC 57.684 43.478 0.00 0.00 0.00 3.91
2865 3015 8.743099 CGATGATGATGCAATATAAAATCATGC 58.257 33.333 10.18 0.21 39.31 4.06
2891 3041 2.659428 CCTCTGGGCAAAGAATAAGGG 58.341 52.381 0.00 0.00 0.00 3.95
2892 3042 2.027385 CTCTGGGCAAAGAATAAGGGC 58.973 52.381 0.00 0.00 0.00 5.19
2893 3043 1.357420 TCTGGGCAAAGAATAAGGGCA 59.643 47.619 0.00 0.00 0.00 5.36
2894 3044 2.024080 TCTGGGCAAAGAATAAGGGCAT 60.024 45.455 0.00 0.00 0.00 4.40
2895 3045 2.101917 CTGGGCAAAGAATAAGGGCATG 59.898 50.000 0.00 0.00 0.00 4.06
2896 3046 2.110578 GGGCAAAGAATAAGGGCATGT 58.889 47.619 0.00 0.00 0.00 3.21
2897 3047 3.295973 GGGCAAAGAATAAGGGCATGTA 58.704 45.455 0.00 0.00 0.00 2.29
2898 3048 3.068165 GGGCAAAGAATAAGGGCATGTAC 59.932 47.826 0.00 0.00 0.00 2.90
2899 3049 3.699038 GGCAAAGAATAAGGGCATGTACA 59.301 43.478 0.00 0.00 0.00 2.90
2900 3050 4.159506 GGCAAAGAATAAGGGCATGTACAA 59.840 41.667 0.00 0.00 0.00 2.41
2901 3051 5.163416 GGCAAAGAATAAGGGCATGTACAAT 60.163 40.000 0.00 0.00 0.00 2.71
2902 3052 5.750067 GCAAAGAATAAGGGCATGTACAATG 59.250 40.000 0.00 0.12 0.00 2.82
2903 3053 6.405731 GCAAAGAATAAGGGCATGTACAATGA 60.406 38.462 0.00 0.00 0.00 2.57
2904 3054 7.685155 GCAAAGAATAAGGGCATGTACAATGAT 60.685 37.037 0.00 0.00 0.00 2.45
2905 3055 6.889301 AGAATAAGGGCATGTACAATGATG 57.111 37.500 0.00 0.00 0.00 3.07
2906 3056 5.771666 AGAATAAGGGCATGTACAATGATGG 59.228 40.000 0.00 0.00 0.00 3.51
2907 3057 1.696063 AGGGCATGTACAATGATGGC 58.304 50.000 11.25 11.25 42.82 4.40
2908 3058 1.063792 AGGGCATGTACAATGATGGCA 60.064 47.619 18.87 0.00 44.77 4.92
2909 3059 1.965643 GGGCATGTACAATGATGGCAT 59.034 47.619 18.87 0.00 44.77 4.40
2910 3060 3.156293 GGGCATGTACAATGATGGCATA 58.844 45.455 18.87 0.00 44.77 3.14
2911 3061 3.765511 GGGCATGTACAATGATGGCATAT 59.234 43.478 18.87 0.00 44.77 1.78
2912 3062 4.381185 GGGCATGTACAATGATGGCATATG 60.381 45.833 18.87 2.78 44.77 1.78
2913 3063 4.381185 GGCATGTACAATGATGGCATATGG 60.381 45.833 14.01 0.00 43.00 2.74
2914 3064 4.460034 GCATGTACAATGATGGCATATGGA 59.540 41.667 0.00 0.00 33.44 3.41
2915 3065 5.126545 GCATGTACAATGATGGCATATGGAT 59.873 40.000 0.00 0.00 33.44 3.41
2916 3066 6.319405 GCATGTACAATGATGGCATATGGATA 59.681 38.462 0.00 0.00 33.44 2.59
2917 3067 7.680350 GCATGTACAATGATGGCATATGGATAC 60.680 40.741 0.00 2.02 33.44 2.24
2918 3068 6.777782 TGTACAATGATGGCATATGGATACA 58.222 36.000 0.00 4.71 43.07 2.29
2919 3069 6.880529 TGTACAATGATGGCATATGGATACAG 59.119 38.462 0.00 0.00 42.37 2.74
2920 3070 6.130692 ACAATGATGGCATATGGATACAGA 57.869 37.500 0.00 0.00 42.37 3.41
2930 3080 1.818419 TGGATACAGATGCCCCATGA 58.182 50.000 0.00 0.00 46.17 3.07
2931 3081 1.421268 TGGATACAGATGCCCCATGAC 59.579 52.381 0.00 0.00 46.17 3.06
2932 3082 1.421268 GGATACAGATGCCCCATGACA 59.579 52.381 0.00 0.00 0.00 3.58
2933 3083 2.158623 GGATACAGATGCCCCATGACAA 60.159 50.000 0.00 0.00 0.00 3.18
2934 3084 3.554934 GATACAGATGCCCCATGACAAA 58.445 45.455 0.00 0.00 0.00 2.83
2935 3085 2.307496 ACAGATGCCCCATGACAAAA 57.693 45.000 0.00 0.00 0.00 2.44
2936 3086 2.607499 ACAGATGCCCCATGACAAAAA 58.393 42.857 0.00 0.00 0.00 1.94
2937 3087 2.564062 ACAGATGCCCCATGACAAAAAG 59.436 45.455 0.00 0.00 0.00 2.27
2938 3088 2.564062 CAGATGCCCCATGACAAAAAGT 59.436 45.455 0.00 0.00 0.00 2.66
2939 3089 3.763360 CAGATGCCCCATGACAAAAAGTA 59.237 43.478 0.00 0.00 0.00 2.24
2940 3090 4.019174 AGATGCCCCATGACAAAAAGTAG 58.981 43.478 0.00 0.00 0.00 2.57
2941 3091 3.237268 TGCCCCATGACAAAAAGTAGT 57.763 42.857 0.00 0.00 0.00 2.73
2942 3092 3.571590 TGCCCCATGACAAAAAGTAGTT 58.428 40.909 0.00 0.00 0.00 2.24
2943 3093 3.964031 TGCCCCATGACAAAAAGTAGTTT 59.036 39.130 0.00 0.00 0.00 2.66
2944 3094 4.202202 TGCCCCATGACAAAAAGTAGTTTG 60.202 41.667 0.00 0.00 42.93 2.93
2945 3095 4.038642 GCCCCATGACAAAAAGTAGTTTGA 59.961 41.667 4.76 0.00 40.29 2.69
2946 3096 5.772521 CCCCATGACAAAAAGTAGTTTGAG 58.227 41.667 4.76 0.00 40.29 3.02
2947 3097 5.278957 CCCCATGACAAAAAGTAGTTTGAGG 60.279 44.000 4.76 1.92 40.29 3.86
2948 3098 5.222631 CCATGACAAAAAGTAGTTTGAGGC 58.777 41.667 4.76 0.00 40.29 4.70
2949 3099 5.221224 CCATGACAAAAAGTAGTTTGAGGCA 60.221 40.000 6.11 6.11 40.29 4.75
2950 3100 6.449698 CATGACAAAAAGTAGTTTGAGGCAT 58.550 36.000 9.44 9.44 40.29 4.40
2951 3101 6.072112 TGACAAAAAGTAGTTTGAGGCATC 57.928 37.500 4.76 0.00 40.29 3.91
2952 3102 5.827797 TGACAAAAAGTAGTTTGAGGCATCT 59.172 36.000 0.00 0.00 40.29 2.90
2953 3103 6.995686 TGACAAAAAGTAGTTTGAGGCATCTA 59.004 34.615 0.00 0.00 40.29 1.98
2954 3104 7.041372 TGACAAAAAGTAGTTTGAGGCATCTAC 60.041 37.037 0.00 0.00 40.29 2.59
2955 3105 6.770785 ACAAAAAGTAGTTTGAGGCATCTACA 59.229 34.615 0.00 0.00 40.29 2.74
2956 3106 7.448469 ACAAAAAGTAGTTTGAGGCATCTACAT 59.552 33.333 0.00 0.00 40.29 2.29
2957 3107 8.299570 CAAAAAGTAGTTTGAGGCATCTACATT 58.700 33.333 0.00 0.00 40.29 2.71
2958 3108 8.409358 AAAAGTAGTTTGAGGCATCTACATTT 57.591 30.769 0.00 0.00 36.30 2.32
2959 3109 9.515226 AAAAGTAGTTTGAGGCATCTACATTTA 57.485 29.630 0.00 0.00 34.70 1.40
2960 3110 9.686683 AAAGTAGTTTGAGGCATCTACATTTAT 57.313 29.630 0.00 0.00 36.30 1.40
2961 3111 9.686683 AAGTAGTTTGAGGCATCTACATTTATT 57.313 29.630 0.00 0.00 36.30 1.40
2962 3112 9.686683 AGTAGTTTGAGGCATCTACATTTATTT 57.313 29.630 0.00 0.00 36.30 1.40
2983 3133 5.376854 TTTTTCTCCTCAATGCAAGCTAC 57.623 39.130 0.00 0.00 0.00 3.58
2984 3134 2.698855 TCTCCTCAATGCAAGCTACC 57.301 50.000 0.00 0.00 0.00 3.18
2985 3135 1.908619 TCTCCTCAATGCAAGCTACCA 59.091 47.619 0.00 0.00 0.00 3.25
2986 3136 2.507058 TCTCCTCAATGCAAGCTACCAT 59.493 45.455 0.00 0.00 0.00 3.55
2987 3137 3.054139 TCTCCTCAATGCAAGCTACCATT 60.054 43.478 6.06 6.06 32.20 3.16
2988 3138 4.164030 TCTCCTCAATGCAAGCTACCATTA 59.836 41.667 10.40 0.00 30.96 1.90
2989 3139 4.454678 TCCTCAATGCAAGCTACCATTAG 58.545 43.478 10.40 8.83 30.96 1.73
2990 3140 4.080356 TCCTCAATGCAAGCTACCATTAGT 60.080 41.667 10.40 0.00 30.96 2.24
2991 3141 4.036027 CCTCAATGCAAGCTACCATTAGTG 59.964 45.833 10.40 2.27 30.96 2.74
3004 3154 4.437682 CCATTAGTGGGCCTCATTAAGA 57.562 45.455 4.53 0.00 42.11 2.10
3005 3155 4.792068 CCATTAGTGGGCCTCATTAAGAA 58.208 43.478 4.53 0.00 42.11 2.52
3006 3156 5.200483 CCATTAGTGGGCCTCATTAAGAAA 58.800 41.667 4.53 0.00 42.11 2.52
3007 3157 5.835280 CCATTAGTGGGCCTCATTAAGAAAT 59.165 40.000 4.53 0.00 42.11 2.17
3008 3158 7.004086 CCATTAGTGGGCCTCATTAAGAAATA 58.996 38.462 4.53 0.00 42.11 1.40
3009 3159 7.175641 CCATTAGTGGGCCTCATTAAGAAATAG 59.824 40.741 4.53 0.00 42.11 1.73
3010 3160 5.975988 AGTGGGCCTCATTAAGAAATAGA 57.024 39.130 4.53 0.00 0.00 1.98
3011 3161 6.327386 AGTGGGCCTCATTAAGAAATAGAA 57.673 37.500 4.53 0.00 0.00 2.10
3012 3162 6.731467 AGTGGGCCTCATTAAGAAATAGAAA 58.269 36.000 4.53 0.00 0.00 2.52
3013 3163 7.182060 AGTGGGCCTCATTAAGAAATAGAAAA 58.818 34.615 4.53 0.00 0.00 2.29
3014 3164 7.841222 AGTGGGCCTCATTAAGAAATAGAAAAT 59.159 33.333 4.53 0.00 0.00 1.82
3015 3165 9.131791 GTGGGCCTCATTAAGAAATAGAAAATA 57.868 33.333 4.53 0.00 0.00 1.40
3016 3166 9.707957 TGGGCCTCATTAAGAAATAGAAAATAA 57.292 29.630 4.53 0.00 0.00 1.40
3038 3188 9.672673 AATAAAGACTTTAGTACACATGCATCT 57.327 29.630 12.93 0.00 0.00 2.90
3039 3189 7.602517 AAAGACTTTAGTACACATGCATCTC 57.397 36.000 0.00 0.00 0.00 2.75
3040 3190 6.537453 AGACTTTAGTACACATGCATCTCT 57.463 37.500 0.00 0.00 0.00 3.10
3041 3191 7.646548 AGACTTTAGTACACATGCATCTCTA 57.353 36.000 0.00 0.00 0.00 2.43
3042 3192 8.243961 AGACTTTAGTACACATGCATCTCTAT 57.756 34.615 0.00 0.00 0.00 1.98
3043 3193 8.700051 AGACTTTAGTACACATGCATCTCTATT 58.300 33.333 0.00 0.00 0.00 1.73
3044 3194 9.319143 GACTTTAGTACACATGCATCTCTATTT 57.681 33.333 0.00 0.00 0.00 1.40
3045 3195 9.672673 ACTTTAGTACACATGCATCTCTATTTT 57.327 29.630 0.00 0.00 0.00 1.82
3048 3198 9.665719 TTAGTACACATGCATCTCTATTTTTCA 57.334 29.630 0.00 0.00 0.00 2.69
3049 3199 7.978982 AGTACACATGCATCTCTATTTTTCAC 58.021 34.615 0.00 0.00 0.00 3.18
3050 3200 7.826252 AGTACACATGCATCTCTATTTTTCACT 59.174 33.333 0.00 0.00 0.00 3.41
3051 3201 7.081526 ACACATGCATCTCTATTTTTCACTC 57.918 36.000 0.00 0.00 0.00 3.51
3052 3202 6.094603 ACACATGCATCTCTATTTTTCACTCC 59.905 38.462 0.00 0.00 0.00 3.85
3053 3203 6.094464 CACATGCATCTCTATTTTTCACTCCA 59.906 38.462 0.00 0.00 0.00 3.86
3054 3204 6.660521 ACATGCATCTCTATTTTTCACTCCAA 59.339 34.615 0.00 0.00 0.00 3.53
3055 3205 6.500684 TGCATCTCTATTTTTCACTCCAAC 57.499 37.500 0.00 0.00 0.00 3.77
3056 3206 5.415701 TGCATCTCTATTTTTCACTCCAACC 59.584 40.000 0.00 0.00 0.00 3.77
3057 3207 5.649831 GCATCTCTATTTTTCACTCCAACCT 59.350 40.000 0.00 0.00 0.00 3.50
3058 3208 6.151817 GCATCTCTATTTTTCACTCCAACCTT 59.848 38.462 0.00 0.00 0.00 3.50
3059 3209 7.309438 GCATCTCTATTTTTCACTCCAACCTTT 60.309 37.037 0.00 0.00 0.00 3.11
3060 3210 8.579863 CATCTCTATTTTTCACTCCAACCTTTT 58.420 33.333 0.00 0.00 0.00 2.27
3061 3211 8.166422 TCTCTATTTTTCACTCCAACCTTTTC 57.834 34.615 0.00 0.00 0.00 2.29
3062 3212 7.777910 TCTCTATTTTTCACTCCAACCTTTTCA 59.222 33.333 0.00 0.00 0.00 2.69
3063 3213 7.940850 TCTATTTTTCACTCCAACCTTTTCAG 58.059 34.615 0.00 0.00 0.00 3.02
3064 3214 4.385358 TTTTCACTCCAACCTTTTCAGC 57.615 40.909 0.00 0.00 0.00 4.26
3065 3215 3.297134 TTCACTCCAACCTTTTCAGCT 57.703 42.857 0.00 0.00 0.00 4.24
3066 3216 3.297134 TCACTCCAACCTTTTCAGCTT 57.703 42.857 0.00 0.00 0.00 3.74
3067 3217 3.631250 TCACTCCAACCTTTTCAGCTTT 58.369 40.909 0.00 0.00 0.00 3.51
3068 3218 4.023291 TCACTCCAACCTTTTCAGCTTTT 58.977 39.130 0.00 0.00 0.00 2.27
3069 3219 4.114794 CACTCCAACCTTTTCAGCTTTTG 58.885 43.478 0.00 0.00 0.00 2.44
3070 3220 4.023291 ACTCCAACCTTTTCAGCTTTTGA 58.977 39.130 0.00 0.00 0.00 2.69
3071 3221 4.651045 ACTCCAACCTTTTCAGCTTTTGAT 59.349 37.500 0.00 0.00 35.27 2.57
3072 3222 5.200368 TCCAACCTTTTCAGCTTTTGATC 57.800 39.130 0.00 0.00 35.27 2.92
3073 3223 4.039124 TCCAACCTTTTCAGCTTTTGATCC 59.961 41.667 0.00 0.00 35.27 3.36
3074 3224 4.309933 CAACCTTTTCAGCTTTTGATCCC 58.690 43.478 0.00 0.00 35.27 3.85
3075 3225 2.558359 ACCTTTTCAGCTTTTGATCCCG 59.442 45.455 0.00 0.00 35.27 5.14
3076 3226 2.094545 CCTTTTCAGCTTTTGATCCCGG 60.095 50.000 0.00 0.00 35.27 5.73
3077 3227 2.577606 TTTCAGCTTTTGATCCCGGA 57.422 45.000 0.73 0.00 35.27 5.14
3078 3228 1.821216 TTCAGCTTTTGATCCCGGAC 58.179 50.000 0.73 0.00 35.27 4.79
3079 3229 0.035439 TCAGCTTTTGATCCCGGACC 60.035 55.000 0.73 0.00 0.00 4.46
3080 3230 0.322456 CAGCTTTTGATCCCGGACCA 60.322 55.000 0.73 0.00 0.00 4.02
3081 3231 0.322546 AGCTTTTGATCCCGGACCAC 60.323 55.000 0.73 0.00 0.00 4.16
3082 3232 0.608035 GCTTTTGATCCCGGACCACA 60.608 55.000 0.73 0.00 0.00 4.17
3083 3233 1.165270 CTTTTGATCCCGGACCACAC 58.835 55.000 0.73 0.00 0.00 3.82
3084 3234 0.768622 TTTTGATCCCGGACCACACT 59.231 50.000 0.73 0.00 0.00 3.55
3085 3235 0.768622 TTTGATCCCGGACCACACTT 59.231 50.000 0.73 0.00 0.00 3.16
3086 3236 0.768622 TTGATCCCGGACCACACTTT 59.231 50.000 0.73 0.00 0.00 2.66
3087 3237 0.768622 TGATCCCGGACCACACTTTT 59.231 50.000 0.73 0.00 0.00 2.27
3088 3238 1.271163 TGATCCCGGACCACACTTTTC 60.271 52.381 0.73 0.00 0.00 2.29
3089 3239 0.037734 ATCCCGGACCACACTTTTCC 59.962 55.000 0.73 0.00 0.00 3.13
3090 3240 1.057851 TCCCGGACCACACTTTTCCT 61.058 55.000 0.73 0.00 0.00 3.36
3091 3241 0.605589 CCCGGACCACACTTTTCCTC 60.606 60.000 0.73 0.00 0.00 3.71
3092 3242 0.396811 CCGGACCACACTTTTCCTCT 59.603 55.000 0.00 0.00 0.00 3.69
3093 3243 1.608283 CCGGACCACACTTTTCCTCTC 60.608 57.143 0.00 0.00 0.00 3.20
3094 3244 1.608283 CGGACCACACTTTTCCTCTCC 60.608 57.143 0.00 0.00 0.00 3.71
3095 3245 1.420138 GGACCACACTTTTCCTCTCCA 59.580 52.381 0.00 0.00 0.00 3.86
3096 3246 2.158667 GGACCACACTTTTCCTCTCCAA 60.159 50.000 0.00 0.00 0.00 3.53
3097 3247 3.142174 GACCACACTTTTCCTCTCCAAG 58.858 50.000 0.00 0.00 0.00 3.61
3098 3248 1.882623 CCACACTTTTCCTCTCCAAGC 59.117 52.381 0.00 0.00 0.00 4.01
3099 3249 2.575532 CACACTTTTCCTCTCCAAGCA 58.424 47.619 0.00 0.00 0.00 3.91
3100 3250 2.291741 CACACTTTTCCTCTCCAAGCAC 59.708 50.000 0.00 0.00 0.00 4.40
3101 3251 1.882623 CACTTTTCCTCTCCAAGCACC 59.117 52.381 0.00 0.00 0.00 5.01
3102 3252 1.777272 ACTTTTCCTCTCCAAGCACCT 59.223 47.619 0.00 0.00 0.00 4.00
3103 3253 2.157738 CTTTTCCTCTCCAAGCACCTG 58.842 52.381 0.00 0.00 0.00 4.00
3104 3254 0.250901 TTTCCTCTCCAAGCACCTGC 60.251 55.000 0.00 0.00 42.49 4.85
3105 3255 2.045536 CCTCTCCAAGCACCTGCC 60.046 66.667 0.00 0.00 43.38 4.85
3106 3256 2.600729 CCTCTCCAAGCACCTGCCT 61.601 63.158 0.00 0.00 43.38 4.75
3107 3257 1.078567 CTCTCCAAGCACCTGCCTC 60.079 63.158 0.00 0.00 43.38 4.70
3108 3258 2.045536 CTCCAAGCACCTGCCTCC 60.046 66.667 0.00 0.00 43.38 4.30
3109 3259 2.530151 TCCAAGCACCTGCCTCCT 60.530 61.111 0.00 0.00 43.38 3.69
3110 3260 2.045536 CCAAGCACCTGCCTCCTC 60.046 66.667 0.00 0.00 43.38 3.71
3111 3261 2.435586 CAAGCACCTGCCTCCTCG 60.436 66.667 0.00 0.00 43.38 4.63
3112 3262 2.604686 AAGCACCTGCCTCCTCGA 60.605 61.111 0.00 0.00 43.38 4.04
3113 3263 2.654079 AAGCACCTGCCTCCTCGAG 61.654 63.158 5.13 5.13 43.38 4.04
3114 3264 3.071206 GCACCTGCCTCCTCGAGA 61.071 66.667 15.71 0.00 34.31 4.04
3115 3265 3.074999 GCACCTGCCTCCTCGAGAG 62.075 68.421 15.71 9.35 42.83 3.20
3125 3275 3.849064 CTCGAGAGGATCCCGCTT 58.151 61.111 6.58 0.00 32.83 4.68
3126 3276 2.119886 CTCGAGAGGATCCCGCTTT 58.880 57.895 6.58 0.00 32.83 3.51
3127 3277 0.031449 CTCGAGAGGATCCCGCTTTC 59.969 60.000 6.58 0.00 32.83 2.62
3128 3278 1.068250 CGAGAGGATCCCGCTTTCC 59.932 63.158 8.55 0.00 32.83 3.13
3129 3279 1.395826 CGAGAGGATCCCGCTTTCCT 61.396 60.000 8.55 0.00 45.12 3.36
3130 3280 1.705873 GAGAGGATCCCGCTTTCCTA 58.294 55.000 8.55 0.00 42.48 2.94
3131 3281 2.252714 GAGAGGATCCCGCTTTCCTAT 58.747 52.381 8.55 0.00 42.48 2.57
3132 3282 2.232696 GAGAGGATCCCGCTTTCCTATC 59.767 54.545 8.55 5.13 42.48 2.08
3133 3283 1.276705 GAGGATCCCGCTTTCCTATCC 59.723 57.143 8.55 0.00 42.48 2.59
3134 3284 0.037232 GGATCCCGCTTTCCTATCCG 60.037 60.000 0.00 0.00 0.00 4.18
3135 3285 0.966920 GATCCCGCTTTCCTATCCGA 59.033 55.000 0.00 0.00 0.00 4.55
3136 3286 1.343465 GATCCCGCTTTCCTATCCGAA 59.657 52.381 0.00 0.00 0.00 4.30
3137 3287 0.462789 TCCCGCTTTCCTATCCGAAC 59.537 55.000 0.00 0.00 0.00 3.95
3138 3288 0.532196 CCCGCTTTCCTATCCGAACC 60.532 60.000 0.00 0.00 0.00 3.62
3139 3289 0.464452 CCGCTTTCCTATCCGAACCT 59.536 55.000 0.00 0.00 0.00 3.50
3140 3290 1.684983 CCGCTTTCCTATCCGAACCTA 59.315 52.381 0.00 0.00 0.00 3.08
3141 3291 2.545322 CCGCTTTCCTATCCGAACCTAC 60.545 54.545 0.00 0.00 0.00 3.18
3142 3292 2.361438 CGCTTTCCTATCCGAACCTACT 59.639 50.000 0.00 0.00 0.00 2.57
3143 3293 3.181478 CGCTTTCCTATCCGAACCTACTT 60.181 47.826 0.00 0.00 0.00 2.24
3144 3294 4.679905 CGCTTTCCTATCCGAACCTACTTT 60.680 45.833 0.00 0.00 0.00 2.66
3145 3295 5.450965 CGCTTTCCTATCCGAACCTACTTTA 60.451 44.000 0.00 0.00 0.00 1.85
3146 3296 5.752472 GCTTTCCTATCCGAACCTACTTTAC 59.248 44.000 0.00 0.00 0.00 2.01
3147 3297 5.505173 TTCCTATCCGAACCTACTTTACG 57.495 43.478 0.00 0.00 0.00 3.18
3148 3298 4.526970 TCCTATCCGAACCTACTTTACGT 58.473 43.478 0.00 0.00 0.00 3.57
3149 3299 4.576463 TCCTATCCGAACCTACTTTACGTC 59.424 45.833 0.00 0.00 0.00 4.34
3150 3300 4.336433 CCTATCCGAACCTACTTTACGTCA 59.664 45.833 0.00 0.00 0.00 4.35
3151 3301 4.996788 ATCCGAACCTACTTTACGTCAT 57.003 40.909 0.00 0.00 0.00 3.06
3152 3302 6.205464 CCTATCCGAACCTACTTTACGTCATA 59.795 42.308 0.00 0.00 0.00 2.15
3153 3303 6.645790 ATCCGAACCTACTTTACGTCATAT 57.354 37.500 0.00 0.00 0.00 1.78
3154 3304 6.064846 TCCGAACCTACTTTACGTCATATC 57.935 41.667 0.00 0.00 0.00 1.63
3155 3305 5.009010 TCCGAACCTACTTTACGTCATATCC 59.991 44.000 0.00 0.00 0.00 2.59
3156 3306 4.908156 CGAACCTACTTTACGTCATATCCG 59.092 45.833 0.00 0.00 0.00 4.18
3157 3307 5.277490 CGAACCTACTTTACGTCATATCCGA 60.277 44.000 0.00 0.00 0.00 4.55
3158 3308 6.567321 CGAACCTACTTTACGTCATATCCGAT 60.567 42.308 0.00 0.00 0.00 4.18
3159 3309 6.251655 ACCTACTTTACGTCATATCCGATC 57.748 41.667 0.00 0.00 0.00 3.69
3160 3310 5.182760 ACCTACTTTACGTCATATCCGATCC 59.817 44.000 0.00 0.00 0.00 3.36
3161 3311 5.415077 CCTACTTTACGTCATATCCGATCCT 59.585 44.000 0.00 0.00 0.00 3.24
3162 3312 6.596888 CCTACTTTACGTCATATCCGATCCTA 59.403 42.308 0.00 0.00 0.00 2.94
3163 3313 6.251655 ACTTTACGTCATATCCGATCCTAC 57.748 41.667 0.00 0.00 0.00 3.18
3164 3314 5.766670 ACTTTACGTCATATCCGATCCTACA 59.233 40.000 0.00 0.00 0.00 2.74
3165 3315 6.433404 ACTTTACGTCATATCCGATCCTACAT 59.567 38.462 0.00 0.00 0.00 2.29
3166 3316 4.703645 ACGTCATATCCGATCCTACATG 57.296 45.455 0.00 0.00 0.00 3.21
3167 3317 3.444034 ACGTCATATCCGATCCTACATGG 59.556 47.826 0.00 0.00 37.10 3.66
3168 3318 3.735208 CGTCATATCCGATCCTACATGGC 60.735 52.174 0.00 0.00 35.26 4.40
3169 3319 3.195610 GTCATATCCGATCCTACATGGCA 59.804 47.826 0.00 0.00 35.26 4.92
3170 3320 4.033009 TCATATCCGATCCTACATGGCAT 58.967 43.478 0.00 0.00 35.26 4.40
3171 3321 2.775911 ATCCGATCCTACATGGCATG 57.224 50.000 25.31 25.31 35.26 4.06
3172 3322 0.035317 TCCGATCCTACATGGCATGC 59.965 55.000 26.70 9.90 35.26 4.06
3173 3323 1.293963 CCGATCCTACATGGCATGCG 61.294 60.000 26.70 19.33 35.26 4.73
3174 3324 0.319813 CGATCCTACATGGCATGCGA 60.320 55.000 26.70 19.03 35.26 5.10
3175 3325 1.436600 GATCCTACATGGCATGCGAG 58.563 55.000 26.70 22.01 35.26 5.03
3176 3326 0.035881 ATCCTACATGGCATGCGAGG 59.964 55.000 30.04 30.04 37.80 4.63
3177 3327 2.256591 CCTACATGGCATGCGAGGC 61.257 63.158 26.96 0.00 32.09 4.70
3187 3337 3.002583 TGCGAGGCATCACCCTGA 61.003 61.111 0.00 0.00 40.58 3.86
3188 3338 2.202987 GCGAGGCATCACCCTGAG 60.203 66.667 0.00 0.00 40.58 3.35
3189 3339 2.503061 CGAGGCATCACCCTGAGG 59.497 66.667 0.00 0.00 40.58 3.86
3195 3345 3.319135 CATCACCCTGAGGCTATGC 57.681 57.895 0.00 0.00 36.11 3.14
3196 3346 0.471191 CATCACCCTGAGGCTATGCA 59.529 55.000 0.00 0.00 36.11 3.96
3197 3347 1.073444 CATCACCCTGAGGCTATGCAT 59.927 52.381 3.79 3.79 36.11 3.96
3198 3348 1.216064 TCACCCTGAGGCTATGCATT 58.784 50.000 3.54 0.00 36.11 3.56
3199 3349 1.134007 TCACCCTGAGGCTATGCATTG 60.134 52.381 3.54 3.55 36.11 2.82
3200 3350 0.921896 ACCCTGAGGCTATGCATTGT 59.078 50.000 3.54 0.00 36.11 2.71
3201 3351 2.126882 ACCCTGAGGCTATGCATTGTA 58.873 47.619 3.54 0.00 36.11 2.41
3202 3352 2.158755 ACCCTGAGGCTATGCATTGTAC 60.159 50.000 3.54 0.42 36.11 2.90
3203 3353 2.158769 CCCTGAGGCTATGCATTGTACA 60.159 50.000 3.54 4.41 0.00 2.90
3204 3354 3.497405 CCCTGAGGCTATGCATTGTACAT 60.497 47.826 3.54 0.00 0.00 2.29
3205 3355 3.501062 CCTGAGGCTATGCATTGTACATG 59.499 47.826 3.54 0.00 0.00 3.21
3206 3356 2.880268 TGAGGCTATGCATTGTACATGC 59.120 45.455 3.54 17.91 44.76 4.06
3207 3357 2.227388 GAGGCTATGCATTGTACATGCC 59.773 50.000 20.37 7.92 43.94 4.40
3208 3358 1.270550 GGCTATGCATTGTACATGCCC 59.729 52.381 20.37 13.59 43.94 5.36
3224 3374 4.141181 ACATGCCCTAATGTACCATGTCAT 60.141 41.667 6.01 0.00 41.74 3.06
3244 3394 6.094061 GTCATCTAGTGTGTTCCAGTAACTC 58.906 44.000 0.00 0.00 38.99 3.01
3348 3498 2.807967 CCGAGTGTGAAAGAAATGCTCA 59.192 45.455 0.00 0.00 0.00 4.26
3351 3501 4.672413 CGAGTGTGAAAGAAATGCTCAAAC 59.328 41.667 0.00 0.00 0.00 2.93
3405 3555 1.004610 CCGATGCTATGTGCTTTGTCG 60.005 52.381 0.00 0.00 43.37 4.35
3428 3578 2.940410 TCACGGTGGAGAACAAAAGTTC 59.060 45.455 8.50 0.28 0.00 3.01
3487 3637 6.378564 GCAGTATATAAGCTCCAGGATACAGA 59.621 42.308 0.00 0.00 41.41 3.41
3492 3642 2.944129 AGCTCCAGGATACAGAGAGAC 58.056 52.381 0.00 0.00 40.62 3.36
3493 3643 2.513738 AGCTCCAGGATACAGAGAGACT 59.486 50.000 0.00 0.00 40.62 3.24
3506 3656 3.056891 CAGAGAGACTGTGAAACCTCTCC 60.057 52.174 15.74 3.70 45.25 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
89 91 2.832563 TCAATCTTGACTGTTGACGCA 58.167 42.857 0.00 0.00 31.01 5.24
128 130 1.215423 AGTTGGGAGCAAAGGACTTGT 59.785 47.619 0.00 0.00 37.36 3.16
188 190 1.277273 AGGTTAGTTGAAGTACGGGGC 59.723 52.381 0.00 0.00 0.00 5.80
275 277 0.038744 AAGGATCCTGGGCACAACAG 59.961 55.000 17.02 0.00 35.74 3.16
276 278 0.038166 GAAGGATCCTGGGCACAACA 59.962 55.000 17.02 0.00 0.00 3.33
277 279 1.026718 CGAAGGATCCTGGGCACAAC 61.027 60.000 17.02 0.00 0.00 3.32
278 280 1.299648 CGAAGGATCCTGGGCACAA 59.700 57.895 17.02 0.00 0.00 3.33
279 281 2.989639 CGAAGGATCCTGGGCACA 59.010 61.111 17.02 0.00 0.00 4.57
280 282 2.514824 GCGAAGGATCCTGGGCAC 60.515 66.667 24.99 11.13 0.00 5.01
281 283 4.161295 CGCGAAGGATCCTGGGCA 62.161 66.667 27.54 0.00 0.00 5.36
283 285 4.918201 GGCGCGAAGGATCCTGGG 62.918 72.222 17.02 13.27 0.00 4.45
284 286 3.854669 AGGCGCGAAGGATCCTGG 61.855 66.667 17.02 11.93 0.00 4.45
341 353 0.460284 CATCCAGGAAGAACCGGACG 60.460 60.000 9.46 0.00 44.74 4.79
346 358 3.044894 AGAGGATCATCCAGGAAGAACC 58.955 50.000 12.12 12.12 39.61 3.62
358 370 3.116199 TCCCCAACCAGATAGAGGATCAT 60.116 47.826 0.00 0.00 37.82 2.45
371 383 3.231207 TCGAAGAAAAATCCCCAACCA 57.769 42.857 0.00 0.00 0.00 3.67
385 397 0.456221 GAGGACAAGCCGATCGAAGA 59.544 55.000 18.66 0.00 43.43 2.87
432 444 2.603503 GAACAGAGATGCGCGCGAAC 62.604 60.000 37.18 22.54 0.00 3.95
437 449 1.203928 CCTAAGAACAGAGATGCGCG 58.796 55.000 0.00 0.00 0.00 6.86
442 454 7.718753 CCAATTCATAAGCCTAAGAACAGAGAT 59.281 37.037 0.00 0.00 0.00 2.75
443 455 7.050377 CCAATTCATAAGCCTAAGAACAGAGA 58.950 38.462 0.00 0.00 0.00 3.10
476 498 1.636988 GAACGTCCGTACCAAGATGG 58.363 55.000 0.00 0.00 45.02 3.51
477 499 1.135603 TCGAACGTCCGTACCAAGATG 60.136 52.381 0.00 0.00 0.00 2.90
478 500 1.167851 TCGAACGTCCGTACCAAGAT 58.832 50.000 0.00 0.00 0.00 2.40
479 501 1.167851 ATCGAACGTCCGTACCAAGA 58.832 50.000 0.00 0.00 0.00 3.02
480 502 1.986698 AATCGAACGTCCGTACCAAG 58.013 50.000 0.00 0.00 0.00 3.61
490 513 0.672401 ATCCGCACCAAATCGAACGT 60.672 50.000 0.00 0.00 0.00 3.99
491 514 0.026285 GATCCGCACCAAATCGAACG 59.974 55.000 0.00 0.00 0.00 3.95
495 518 1.094785 AAAGGATCCGCACCAAATCG 58.905 50.000 5.98 0.00 0.00 3.34
508 531 5.699143 AGCATACATAGGCAGAAAAAGGAT 58.301 37.500 0.00 0.00 35.07 3.24
516 539 4.454678 CCTCAAAAGCATACATAGGCAGA 58.545 43.478 0.00 0.00 35.07 4.26
518 541 2.951642 GCCTCAAAAGCATACATAGGCA 59.048 45.455 5.61 0.00 45.81 4.75
519 542 3.217626 AGCCTCAAAAGCATACATAGGC 58.782 45.455 0.00 0.00 46.67 3.93
521 544 5.363101 TCTGAGCCTCAAAAGCATACATAG 58.637 41.667 0.00 0.00 0.00 2.23
522 545 5.357742 TCTGAGCCTCAAAAGCATACATA 57.642 39.130 0.00 0.00 0.00 2.29
523 546 4.226427 TCTGAGCCTCAAAAGCATACAT 57.774 40.909 0.00 0.00 0.00 2.29
524 547 3.701205 TCTGAGCCTCAAAAGCATACA 57.299 42.857 0.00 0.00 0.00 2.29
525 548 4.256920 TCTTCTGAGCCTCAAAAGCATAC 58.743 43.478 2.78 0.00 0.00 2.39
539 562 6.037098 CGTAACAGGTATTTCCTCTTCTGAG 58.963 44.000 0.00 0.00 46.24 3.35
555 578 6.727824 ATGAGATTTCTTTGTCGTAACAGG 57.272 37.500 0.00 0.00 36.57 4.00
559 584 8.771920 ACATGTATGAGATTTCTTTGTCGTAA 57.228 30.769 0.00 0.00 0.00 3.18
562 587 7.521529 ACAACATGTATGAGATTTCTTTGTCG 58.478 34.615 0.00 0.00 0.00 4.35
587 612 2.852449 TGTGAAGAAACCGCCAACATA 58.148 42.857 0.00 0.00 0.00 2.29
588 613 1.686355 TGTGAAGAAACCGCCAACAT 58.314 45.000 0.00 0.00 0.00 2.71
589 614 1.133407 GTTGTGAAGAAACCGCCAACA 59.867 47.619 0.00 0.00 0.00 3.33
590 615 1.404035 AGTTGTGAAGAAACCGCCAAC 59.596 47.619 0.00 0.00 0.00 3.77
593 618 1.305201 TCAGTTGTGAAGAAACCGCC 58.695 50.000 0.00 0.00 0.00 6.13
594 619 3.626028 ATTCAGTTGTGAAGAAACCGC 57.374 42.857 0.00 0.00 45.96 5.68
596 621 8.871686 AAAACATATTCAGTTGTGAAGAAACC 57.128 30.769 0.00 0.00 45.96 3.27
603 630 9.342308 AGAAGAGAAAAACATATTCAGTTGTGA 57.658 29.630 0.00 0.00 0.00 3.58
629 656 7.200455 TCGCGTCTCAGAAATCTTATTAATCA 58.800 34.615 5.77 0.00 0.00 2.57
648 675 2.699251 AAGGTGGAAAATTTCGCGTC 57.301 45.000 5.77 0.00 0.00 5.19
660 687 4.385199 CCAAGCATATGTCCTAAAGGTGGA 60.385 45.833 4.29 0.00 36.34 4.02
679 706 7.094205 ACCACTGCAGATTCTTAATAAACCAAG 60.094 37.037 23.35 0.00 0.00 3.61
681 708 6.245408 ACCACTGCAGATTCTTAATAAACCA 58.755 36.000 23.35 0.00 0.00 3.67
686 713 6.108687 CACTGACCACTGCAGATTCTTAATA 58.891 40.000 23.35 0.00 36.86 0.98
699 726 4.038042 TCAGAAGTAGAACACTGACCACTG 59.962 45.833 0.00 0.00 37.63 3.66
700 727 4.215908 TCAGAAGTAGAACACTGACCACT 58.784 43.478 0.00 0.00 37.63 4.00
711 738 9.003658 GTTCTTCATTGGAATTCAGAAGTAGAA 57.996 33.333 19.52 13.15 37.53 2.10
712 739 8.156820 TGTTCTTCATTGGAATTCAGAAGTAGA 58.843 33.333 19.52 11.79 37.53 2.59
714 741 8.690203 TTGTTCTTCATTGGAATTCAGAAGTA 57.310 30.769 19.52 12.74 37.53 2.24
715 742 7.587037 TTGTTCTTCATTGGAATTCAGAAGT 57.413 32.000 19.52 0.00 37.53 3.01
721 748 8.323140 CGCAAATATTGTTCTTCATTGGAATTC 58.677 33.333 0.00 0.00 31.34 2.17
722 749 8.034215 TCGCAAATATTGTTCTTCATTGGAATT 58.966 29.630 0.00 0.00 31.34 2.17
723 750 7.489113 GTCGCAAATATTGTTCTTCATTGGAAT 59.511 33.333 0.00 0.00 31.34 3.01
725 752 6.321717 GTCGCAAATATTGTTCTTCATTGGA 58.678 36.000 0.00 0.00 0.00 3.53
726 753 5.227805 CGTCGCAAATATTGTTCTTCATTGG 59.772 40.000 0.00 0.00 0.00 3.16
727 754 5.794945 ACGTCGCAAATATTGTTCTTCATTG 59.205 36.000 0.00 0.00 0.00 2.82
729 756 5.545658 ACGTCGCAAATATTGTTCTTCAT 57.454 34.783 0.00 0.00 0.00 2.57
731 758 7.480542 ACAATTACGTCGCAAATATTGTTCTTC 59.519 33.333 0.00 0.00 33.73 2.87
746 787 6.880822 TTCTCCAAATCTACAATTACGTCG 57.119 37.500 0.00 0.00 0.00 5.12
748 794 7.968405 GCAAATTCTCCAAATCTACAATTACGT 59.032 33.333 0.00 0.00 0.00 3.57
777 823 4.508551 TCCAGTGAGCAATCCAATGTAT 57.491 40.909 0.00 0.00 0.00 2.29
785 833 4.005650 TGACAGAAATCCAGTGAGCAATC 58.994 43.478 0.00 0.00 0.00 2.67
787 835 3.490439 TGACAGAAATCCAGTGAGCAA 57.510 42.857 0.00 0.00 0.00 3.91
802 850 6.092396 GCATATGAGGATGAAGCTATTGACAG 59.908 42.308 6.97 0.00 0.00 3.51
804 852 5.936372 TGCATATGAGGATGAAGCTATTGAC 59.064 40.000 6.97 0.00 0.00 3.18
809 857 8.546322 AGAAATATGCATATGAGGATGAAGCTA 58.454 33.333 19.77 0.00 0.00 3.32
811 859 7.415318 CCAGAAATATGCATATGAGGATGAAGC 60.415 40.741 19.77 1.42 0.00 3.86
818 867 5.122869 CGGAACCAGAAATATGCATATGAGG 59.877 44.000 19.77 18.80 0.00 3.86
823 872 4.085357 AGCGGAACCAGAAATATGCATA 57.915 40.909 9.27 9.27 0.00 3.14
835 884 3.382546 GGTATCAAGTACTAGCGGAACCA 59.617 47.826 0.00 0.00 33.64 3.67
842 891 7.328737 CGTGGATTTATGGTATCAAGTACTAGC 59.671 40.741 0.00 0.00 33.64 3.42
855 915 3.606687 GTCAGAACCGTGGATTTATGGT 58.393 45.455 0.00 0.00 41.67 3.55
874 934 4.893829 AAGGTACAGAAAAGAGAGGGTC 57.106 45.455 0.00 0.00 0.00 4.46
880 940 7.099764 TCTGCTATGAAAGGTACAGAAAAGAG 58.900 38.462 0.00 0.00 31.60 2.85
912 972 3.446799 TGTGTGTCAAAGAAATTGCAGC 58.553 40.909 0.00 0.00 38.98 5.25
921 981 4.422073 ACTTGGAGATGTGTGTCAAAGA 57.578 40.909 0.00 0.00 33.44 2.52
923 983 4.522114 TGAACTTGGAGATGTGTGTCAAA 58.478 39.130 0.00 0.00 0.00 2.69
929 989 5.813383 AGAATGATGAACTTGGAGATGTGT 58.187 37.500 0.00 0.00 0.00 3.72
937 997 5.581479 CAGAGACAGAGAATGATGAACTTGG 59.419 44.000 0.00 0.00 0.00 3.61
950 1010 2.001076 TGGTTGAGCAGAGACAGAGA 57.999 50.000 0.00 0.00 0.00 3.10
980 1041 6.207417 ACCCATTTCTTTATGTGTGACTGAAG 59.793 38.462 0.00 0.00 0.00 3.02
1011 1072 4.976224 TTCATCATCTGCAACTCCAATG 57.024 40.909 0.00 0.00 0.00 2.82
1012 1073 6.238953 GCTATTTCATCATCTGCAACTCCAAT 60.239 38.462 0.00 0.00 0.00 3.16
1013 1074 5.066893 GCTATTTCATCATCTGCAACTCCAA 59.933 40.000 0.00 0.00 0.00 3.53
1014 1075 4.577693 GCTATTTCATCATCTGCAACTCCA 59.422 41.667 0.00 0.00 0.00 3.86
1015 1076 4.577693 TGCTATTTCATCATCTGCAACTCC 59.422 41.667 0.00 0.00 0.00 3.85
1016 1077 5.526479 TCTGCTATTTCATCATCTGCAACTC 59.474 40.000 0.00 0.00 0.00 3.01
1017 1078 5.296283 GTCTGCTATTTCATCATCTGCAACT 59.704 40.000 0.00 0.00 0.00 3.16
1023 1084 7.071069 TGGTATGTCTGCTATTTCATCATCT 57.929 36.000 0.00 0.00 0.00 2.90
1026 1087 6.594744 ACATGGTATGTCTGCTATTTCATCA 58.405 36.000 0.00 0.00 39.92 3.07
1032 1093 6.239217 TCTGAACATGGTATGTCTGCTATT 57.761 37.500 0.00 0.00 44.07 1.73
1037 1098 4.449131 AGCATCTGAACATGGTATGTCTG 58.551 43.478 0.00 0.00 44.07 3.51
1048 1109 4.216902 CAGAATTGGTGAAGCATCTGAACA 59.783 41.667 7.13 0.00 37.14 3.18
1074 1138 4.327982 AGGGACTGTGATGTGATATTCG 57.672 45.455 0.00 0.00 37.18 3.34
1124 1188 1.154131 CGTCTCTCGTGCTGGTCTG 60.154 63.158 0.00 0.00 34.52 3.51
1126 1190 2.179517 CCGTCTCTCGTGCTGGTC 59.820 66.667 0.00 0.00 37.94 4.02
1131 1195 1.803519 CAGAAGCCGTCTCTCGTGC 60.804 63.158 0.00 0.00 32.70 5.34
1153 1217 0.238553 GAAGGCGTTGCTTTGAGGAC 59.761 55.000 0.00 0.00 0.00 3.85
1158 1222 0.936297 GCACTGAAGGCGTTGCTTTG 60.936 55.000 0.00 0.00 0.00 2.77
1205 1269 2.893489 AGCTGAATTTTTCCCAGTGGAC 59.107 45.455 11.95 0.00 41.57 4.02
1206 1270 2.892852 CAGCTGAATTTTTCCCAGTGGA 59.107 45.455 11.95 0.00 39.54 4.02
1476 1540 2.675519 GCTCATGAGCGTGAAGAGG 58.324 57.895 30.64 0.00 45.29 3.69
1506 1570 1.987855 GTGGTGGACGAGGATGGGA 60.988 63.158 0.00 0.00 0.00 4.37
1659 1723 0.108662 TGCACTCCATGTACTGCGAG 60.109 55.000 0.00 0.00 0.00 5.03
1717 1781 2.255316 GAAGAAGAAGTTCTCCGCGAG 58.745 52.381 8.23 3.02 42.59 5.03
1777 1841 1.437986 CTAGAGGGCTGTACACCGC 59.562 63.158 0.00 0.00 0.00 5.68
1778 1842 2.116383 CCTAGAGGGCTGTACACCG 58.884 63.158 0.00 0.00 0.00 4.94
1968 2044 2.671177 CCAGCCGAACACGCAGAAG 61.671 63.158 0.00 0.00 0.00 2.85
2001 2077 2.052104 GTACATGTTGCCCAGCCCC 61.052 63.158 2.30 0.00 0.00 5.80
2028 2104 2.362120 AGCAGCAGGAACATGGCC 60.362 61.111 0.00 0.00 0.00 5.36
2151 2227 3.387225 GAAGCCCCCGTACAGGAGC 62.387 68.421 0.00 0.00 45.00 4.70
2163 2239 1.153005 CTGCATCCTCCAGAAGCCC 60.153 63.158 0.00 0.00 38.45 5.19
2166 2242 2.224329 CCTCATCTGCATCCTCCAGAAG 60.224 54.545 0.00 0.00 42.12 2.85
2178 2254 1.886777 GAGCCGCTTCCTCATCTGC 60.887 63.158 0.00 0.00 0.00 4.26
2321 2397 3.539107 CGTAGAAACCGCCGTCGC 61.539 66.667 0.00 0.00 0.00 5.19
2393 2469 0.321122 GACCACCTCCTGCACTTCAG 60.321 60.000 0.00 0.00 42.49 3.02
2396 2472 2.743718 CGACCACCTCCTGCACTT 59.256 61.111 0.00 0.00 0.00 3.16
2397 2473 3.314331 CCGACCACCTCCTGCACT 61.314 66.667 0.00 0.00 0.00 4.40
2408 2484 2.668185 ATTGACAACACCGCCGACCA 62.668 55.000 0.00 0.00 0.00 4.02
2410 2486 1.495951 GATTGACAACACCGCCGAC 59.504 57.895 0.00 0.00 0.00 4.79
2414 2490 3.960237 TCGGATTGACAACACCGC 58.040 55.556 22.68 0.00 44.19 5.68
2430 2506 3.823330 ATCTCGCCGTCCACCGTC 61.823 66.667 0.00 0.00 33.66 4.79
2431 2507 4.129737 CATCTCGCCGTCCACCGT 62.130 66.667 0.00 0.00 33.66 4.83
2472 2548 2.716017 CCTCTGCCGTCCAGACTCC 61.716 68.421 0.00 0.00 45.44 3.85
2500 2576 4.608890 GCCATTTGCAACAATTTCTTCGTG 60.609 41.667 0.00 0.00 40.77 4.35
2556 2632 1.741706 CAGCATCAGTCACCATCCAAC 59.258 52.381 0.00 0.00 0.00 3.77
2579 2655 0.924090 CCGTCAGCTTGCGAATACTC 59.076 55.000 8.11 0.00 0.00 2.59
2585 2662 3.255888 AGAATATATCCGTCAGCTTGCGA 59.744 43.478 8.11 0.00 0.00 5.10
2588 2665 5.788450 AGGAAGAATATATCCGTCAGCTTG 58.212 41.667 0.00 0.00 40.78 4.01
2602 2683 4.228666 TCGATCCCCCAAAAAGGAAGAATA 59.771 41.667 0.00 0.00 41.22 1.75
2615 2696 1.306568 TGGTGACATCGATCCCCCA 60.307 57.895 0.00 0.00 33.40 4.96
2616 2697 3.642078 TGGTGACATCGATCCCCC 58.358 61.111 0.00 0.00 33.40 5.40
2674 2755 6.212888 TGACTTATAACGACCTAAAGTCCC 57.787 41.667 10.14 0.00 43.38 4.46
2786 2867 4.905429 AGAGGCTTTCTTCTTCTTCTTCC 58.095 43.478 0.00 0.00 29.61 3.46
2850 3000 7.747799 CAGAGGCTTACGCATGATTTTATATTG 59.252 37.037 0.00 0.00 38.10 1.90
2878 3028 4.981806 TGTACATGCCCTTATTCTTTGC 57.018 40.909 0.00 0.00 0.00 3.68
2879 3029 7.099266 TCATTGTACATGCCCTTATTCTTTG 57.901 36.000 0.00 0.00 0.00 2.77
2886 3036 3.221771 GCCATCATTGTACATGCCCTTA 58.778 45.455 0.00 0.00 0.00 2.69
2887 3037 2.034124 GCCATCATTGTACATGCCCTT 58.966 47.619 0.00 0.00 0.00 3.95
2888 3038 1.063792 TGCCATCATTGTACATGCCCT 60.064 47.619 0.00 0.00 0.00 5.19
2889 3039 1.401761 TGCCATCATTGTACATGCCC 58.598 50.000 0.00 0.00 0.00 5.36
2890 3040 4.381185 CCATATGCCATCATTGTACATGCC 60.381 45.833 0.00 0.00 34.22 4.40
2891 3041 4.460034 TCCATATGCCATCATTGTACATGC 59.540 41.667 0.00 0.00 34.22 4.06
2892 3042 6.769134 ATCCATATGCCATCATTGTACATG 57.231 37.500 0.00 0.00 34.22 3.21
2893 3043 7.404481 TGTATCCATATGCCATCATTGTACAT 58.596 34.615 0.00 0.00 34.22 2.29
2894 3044 6.777782 TGTATCCATATGCCATCATTGTACA 58.222 36.000 0.00 0.00 34.22 2.90
2895 3045 7.105588 TCTGTATCCATATGCCATCATTGTAC 58.894 38.462 0.00 0.00 34.22 2.90
2896 3046 7.256494 TCTGTATCCATATGCCATCATTGTA 57.744 36.000 0.00 0.00 34.22 2.41
2897 3047 6.130692 TCTGTATCCATATGCCATCATTGT 57.869 37.500 0.00 0.00 34.22 2.71
2898 3048 6.459710 GCATCTGTATCCATATGCCATCATTG 60.460 42.308 0.00 0.00 42.37 2.82
2899 3049 5.593095 GCATCTGTATCCATATGCCATCATT 59.407 40.000 0.00 0.00 42.37 2.57
2900 3050 5.131067 GCATCTGTATCCATATGCCATCAT 58.869 41.667 0.00 0.00 42.37 2.45
2901 3051 4.520179 GCATCTGTATCCATATGCCATCA 58.480 43.478 0.00 0.00 42.37 3.07
2906 3056 2.025981 TGGGGCATCTGTATCCATATGC 60.026 50.000 0.00 0.59 45.53 3.14
2907 3057 4.080186 TCATGGGGCATCTGTATCCATATG 60.080 45.833 0.00 0.00 36.55 1.78
2908 3058 4.080129 GTCATGGGGCATCTGTATCCATAT 60.080 45.833 0.00 0.00 36.55 1.78
2909 3059 3.264193 GTCATGGGGCATCTGTATCCATA 59.736 47.826 0.00 0.00 36.55 2.74
2910 3060 2.040813 GTCATGGGGCATCTGTATCCAT 59.959 50.000 0.00 0.00 38.61 3.41
2911 3061 1.421268 GTCATGGGGCATCTGTATCCA 59.579 52.381 0.00 0.00 0.00 3.41
2912 3062 1.421268 TGTCATGGGGCATCTGTATCC 59.579 52.381 0.00 0.00 0.00 2.59
2913 3063 2.936919 TGTCATGGGGCATCTGTATC 57.063 50.000 0.00 0.00 0.00 2.24
2914 3064 3.668141 TTTGTCATGGGGCATCTGTAT 57.332 42.857 0.00 0.00 0.00 2.29
2915 3065 3.448093 TTTTGTCATGGGGCATCTGTA 57.552 42.857 0.00 0.00 0.00 2.74
2916 3066 2.307496 TTTTGTCATGGGGCATCTGT 57.693 45.000 0.00 0.00 0.00 3.41
2917 3067 2.564062 ACTTTTTGTCATGGGGCATCTG 59.436 45.455 0.00 0.00 0.00 2.90
2918 3068 2.893424 ACTTTTTGTCATGGGGCATCT 58.107 42.857 0.00 0.00 0.00 2.90
2919 3069 3.763897 ACTACTTTTTGTCATGGGGCATC 59.236 43.478 0.00 0.00 0.00 3.91
2920 3070 3.778265 ACTACTTTTTGTCATGGGGCAT 58.222 40.909 0.00 0.00 0.00 4.40
2921 3071 3.237268 ACTACTTTTTGTCATGGGGCA 57.763 42.857 0.00 0.00 0.00 5.36
2922 3072 4.038642 TCAAACTACTTTTTGTCATGGGGC 59.961 41.667 0.00 0.00 37.66 5.80
2923 3073 5.278957 CCTCAAACTACTTTTTGTCATGGGG 60.279 44.000 0.00 0.00 37.66 4.96
2924 3074 5.772521 CCTCAAACTACTTTTTGTCATGGG 58.227 41.667 0.00 0.00 37.66 4.00
2925 3075 5.221224 TGCCTCAAACTACTTTTTGTCATGG 60.221 40.000 0.00 0.00 37.66 3.66
2926 3076 5.830912 TGCCTCAAACTACTTTTTGTCATG 58.169 37.500 0.00 0.00 37.66 3.07
2927 3077 6.491403 AGATGCCTCAAACTACTTTTTGTCAT 59.509 34.615 0.00 0.00 37.66 3.06
2928 3078 5.827797 AGATGCCTCAAACTACTTTTTGTCA 59.172 36.000 0.00 0.00 37.66 3.58
2929 3079 6.319141 AGATGCCTCAAACTACTTTTTGTC 57.681 37.500 0.00 0.00 37.66 3.18
2930 3080 6.770785 TGTAGATGCCTCAAACTACTTTTTGT 59.229 34.615 0.00 0.00 37.66 2.83
2931 3081 7.202016 TGTAGATGCCTCAAACTACTTTTTG 57.798 36.000 0.00 0.00 37.75 2.44
2932 3082 8.409358 AATGTAGATGCCTCAAACTACTTTTT 57.591 30.769 0.00 0.00 36.95 1.94
2933 3083 8.409358 AAATGTAGATGCCTCAAACTACTTTT 57.591 30.769 0.00 0.00 37.84 2.27
2934 3084 9.686683 ATAAATGTAGATGCCTCAAACTACTTT 57.313 29.630 0.00 0.00 36.95 2.66
2935 3085 9.686683 AATAAATGTAGATGCCTCAAACTACTT 57.313 29.630 0.00 0.00 36.95 2.24
2936 3086 9.686683 AAATAAATGTAGATGCCTCAAACTACT 57.313 29.630 0.00 0.00 36.95 2.57
2961 3111 4.218417 GGTAGCTTGCATTGAGGAGAAAAA 59.782 41.667 0.00 0.00 0.00 1.94
2962 3112 3.758554 GGTAGCTTGCATTGAGGAGAAAA 59.241 43.478 0.00 0.00 0.00 2.29
2963 3113 3.244875 TGGTAGCTTGCATTGAGGAGAAA 60.245 43.478 0.00 0.00 0.00 2.52
2964 3114 2.305635 TGGTAGCTTGCATTGAGGAGAA 59.694 45.455 0.00 0.00 0.00 2.87
2965 3115 1.908619 TGGTAGCTTGCATTGAGGAGA 59.091 47.619 0.00 0.00 0.00 3.71
2966 3116 2.408271 TGGTAGCTTGCATTGAGGAG 57.592 50.000 0.00 0.00 0.00 3.69
2967 3117 3.370840 AATGGTAGCTTGCATTGAGGA 57.629 42.857 0.00 0.00 0.00 3.71
2968 3118 4.036027 CACTAATGGTAGCTTGCATTGAGG 59.964 45.833 0.00 0.00 0.00 3.86
2969 3119 4.036027 CCACTAATGGTAGCTTGCATTGAG 59.964 45.833 0.00 0.00 41.64 3.02
2970 3120 3.947196 CCACTAATGGTAGCTTGCATTGA 59.053 43.478 0.00 0.00 41.64 2.57
2971 3121 3.067180 CCCACTAATGGTAGCTTGCATTG 59.933 47.826 0.00 0.00 45.66 2.82
2972 3122 3.290710 CCCACTAATGGTAGCTTGCATT 58.709 45.455 0.00 0.00 45.66 3.56
2973 3123 2.936202 CCCACTAATGGTAGCTTGCAT 58.064 47.619 0.00 0.00 45.66 3.96
2974 3124 1.681780 GCCCACTAATGGTAGCTTGCA 60.682 52.381 0.00 0.00 45.66 4.08
2975 3125 1.025041 GCCCACTAATGGTAGCTTGC 58.975 55.000 0.00 0.00 45.66 4.01
2976 3126 1.212935 AGGCCCACTAATGGTAGCTTG 59.787 52.381 0.00 0.00 45.66 4.01
2977 3127 1.490910 GAGGCCCACTAATGGTAGCTT 59.509 52.381 0.00 0.00 45.66 3.74
2978 3128 1.132500 GAGGCCCACTAATGGTAGCT 58.868 55.000 0.00 0.00 45.66 3.32
2979 3129 0.837272 TGAGGCCCACTAATGGTAGC 59.163 55.000 0.00 0.00 45.66 3.58
2980 3130 3.864789 AATGAGGCCCACTAATGGTAG 57.135 47.619 0.00 0.00 45.66 3.18
2981 3131 4.972568 TCTTAATGAGGCCCACTAATGGTA 59.027 41.667 0.00 0.00 45.66 3.25
2982 3132 3.785887 TCTTAATGAGGCCCACTAATGGT 59.214 43.478 0.00 0.00 45.66 3.55
2983 3133 4.437682 TCTTAATGAGGCCCACTAATGG 57.562 45.455 0.00 0.00 46.81 3.16
2984 3134 6.966534 ATTTCTTAATGAGGCCCACTAATG 57.033 37.500 0.00 0.00 0.00 1.90
2985 3135 8.045720 TCTATTTCTTAATGAGGCCCACTAAT 57.954 34.615 0.00 0.00 0.00 1.73
2986 3136 7.446106 TCTATTTCTTAATGAGGCCCACTAA 57.554 36.000 0.00 0.00 0.00 2.24
2987 3137 7.446106 TTCTATTTCTTAATGAGGCCCACTA 57.554 36.000 0.00 0.00 0.00 2.74
2988 3138 5.975988 TCTATTTCTTAATGAGGCCCACT 57.024 39.130 0.00 0.00 0.00 4.00
2989 3139 7.404671 TTTTCTATTTCTTAATGAGGCCCAC 57.595 36.000 0.00 0.00 0.00 4.61
2990 3140 9.707957 TTATTTTCTATTTCTTAATGAGGCCCA 57.292 29.630 0.00 0.00 0.00 5.36
3012 3162 9.672673 AGATGCATGTGTACTAAAGTCTTTATT 57.327 29.630 2.46 3.27 0.00 1.40
3013 3163 9.319143 GAGATGCATGTGTACTAAAGTCTTTAT 57.681 33.333 2.46 0.30 0.00 1.40
3014 3164 8.531982 AGAGATGCATGTGTACTAAAGTCTTTA 58.468 33.333 2.46 4.97 0.00 1.85
3015 3165 7.390027 AGAGATGCATGTGTACTAAAGTCTTT 58.610 34.615 2.46 2.81 0.00 2.52
3016 3166 6.940739 AGAGATGCATGTGTACTAAAGTCTT 58.059 36.000 2.46 0.00 0.00 3.01
3017 3167 6.537453 AGAGATGCATGTGTACTAAAGTCT 57.463 37.500 2.46 0.00 0.00 3.24
3018 3168 8.879342 AATAGAGATGCATGTGTACTAAAGTC 57.121 34.615 2.46 0.00 0.00 3.01
3019 3169 9.672673 AAAATAGAGATGCATGTGTACTAAAGT 57.327 29.630 2.46 0.00 0.00 2.66
3022 3172 9.665719 TGAAAAATAGAGATGCATGTGTACTAA 57.334 29.630 2.46 0.00 0.00 2.24
3023 3173 9.098355 GTGAAAAATAGAGATGCATGTGTACTA 57.902 33.333 2.46 0.00 0.00 1.82
3024 3174 7.826252 AGTGAAAAATAGAGATGCATGTGTACT 59.174 33.333 2.46 0.00 0.00 2.73
3025 3175 7.978982 AGTGAAAAATAGAGATGCATGTGTAC 58.021 34.615 2.46 0.00 0.00 2.90
3026 3176 7.280876 GGAGTGAAAAATAGAGATGCATGTGTA 59.719 37.037 2.46 2.80 0.00 2.90
3027 3177 6.094603 GGAGTGAAAAATAGAGATGCATGTGT 59.905 38.462 2.46 0.00 0.00 3.72
3028 3178 6.094464 TGGAGTGAAAAATAGAGATGCATGTG 59.906 38.462 2.46 0.00 0.00 3.21
3029 3179 6.182627 TGGAGTGAAAAATAGAGATGCATGT 58.817 36.000 2.46 0.00 0.00 3.21
3030 3180 6.688637 TGGAGTGAAAAATAGAGATGCATG 57.311 37.500 2.46 0.00 0.00 4.06
3031 3181 6.096001 GGTTGGAGTGAAAAATAGAGATGCAT 59.904 38.462 0.00 0.00 0.00 3.96
3032 3182 5.415701 GGTTGGAGTGAAAAATAGAGATGCA 59.584 40.000 0.00 0.00 0.00 3.96
3033 3183 5.649831 AGGTTGGAGTGAAAAATAGAGATGC 59.350 40.000 0.00 0.00 0.00 3.91
3034 3184 7.693969 AAGGTTGGAGTGAAAAATAGAGATG 57.306 36.000 0.00 0.00 0.00 2.90
3035 3185 8.712228 AAAAGGTTGGAGTGAAAAATAGAGAT 57.288 30.769 0.00 0.00 0.00 2.75
3036 3186 7.777910 TGAAAAGGTTGGAGTGAAAAATAGAGA 59.222 33.333 0.00 0.00 0.00 3.10
3037 3187 7.940850 TGAAAAGGTTGGAGTGAAAAATAGAG 58.059 34.615 0.00 0.00 0.00 2.43
3038 3188 7.470009 GCTGAAAAGGTTGGAGTGAAAAATAGA 60.470 37.037 0.00 0.00 0.00 1.98
3039 3189 6.642540 GCTGAAAAGGTTGGAGTGAAAAATAG 59.357 38.462 0.00 0.00 0.00 1.73
3040 3190 6.323739 AGCTGAAAAGGTTGGAGTGAAAAATA 59.676 34.615 0.00 0.00 0.00 1.40
3041 3191 5.129320 AGCTGAAAAGGTTGGAGTGAAAAAT 59.871 36.000 0.00 0.00 0.00 1.82
3042 3192 4.466015 AGCTGAAAAGGTTGGAGTGAAAAA 59.534 37.500 0.00 0.00 0.00 1.94
3043 3193 4.023291 AGCTGAAAAGGTTGGAGTGAAAA 58.977 39.130 0.00 0.00 0.00 2.29
3044 3194 3.631250 AGCTGAAAAGGTTGGAGTGAAA 58.369 40.909 0.00 0.00 0.00 2.69
3045 3195 3.297134 AGCTGAAAAGGTTGGAGTGAA 57.703 42.857 0.00 0.00 0.00 3.18
3046 3196 3.297134 AAGCTGAAAAGGTTGGAGTGA 57.703 42.857 0.00 0.00 0.00 3.41
3047 3197 4.114794 CAAAAGCTGAAAAGGTTGGAGTG 58.885 43.478 0.00 0.00 0.00 3.51
3048 3198 4.023291 TCAAAAGCTGAAAAGGTTGGAGT 58.977 39.130 0.00 0.00 0.00 3.85
3049 3199 4.654091 TCAAAAGCTGAAAAGGTTGGAG 57.346 40.909 0.00 0.00 0.00 3.86
3050 3200 4.039124 GGATCAAAAGCTGAAAAGGTTGGA 59.961 41.667 0.00 0.00 37.67 3.53
3051 3201 4.309933 GGATCAAAAGCTGAAAAGGTTGG 58.690 43.478 0.00 0.00 37.67 3.77
3052 3202 4.309933 GGGATCAAAAGCTGAAAAGGTTG 58.690 43.478 0.00 0.00 37.67 3.77
3053 3203 3.005791 CGGGATCAAAAGCTGAAAAGGTT 59.994 43.478 0.00 0.00 37.67 3.50
3054 3204 2.558359 CGGGATCAAAAGCTGAAAAGGT 59.442 45.455 0.00 0.00 37.67 3.50
3055 3205 2.094545 CCGGGATCAAAAGCTGAAAAGG 60.095 50.000 0.00 0.00 37.67 3.11
3056 3206 2.819608 TCCGGGATCAAAAGCTGAAAAG 59.180 45.455 0.00 0.00 37.67 2.27
3057 3207 2.556622 GTCCGGGATCAAAAGCTGAAAA 59.443 45.455 0.00 0.00 37.67 2.29
3058 3208 2.159382 GTCCGGGATCAAAAGCTGAAA 58.841 47.619 0.00 0.00 37.67 2.69
3059 3209 1.613255 GGTCCGGGATCAAAAGCTGAA 60.613 52.381 0.00 0.00 37.67 3.02
3060 3210 0.035439 GGTCCGGGATCAAAAGCTGA 60.035 55.000 0.00 0.00 38.81 4.26
3061 3211 0.322456 TGGTCCGGGATCAAAAGCTG 60.322 55.000 7.73 0.00 0.00 4.24
3062 3212 0.322546 GTGGTCCGGGATCAAAAGCT 60.323 55.000 12.49 0.00 0.00 3.74
3063 3213 0.608035 TGTGGTCCGGGATCAAAAGC 60.608 55.000 12.49 0.00 0.00 3.51
3064 3214 1.165270 GTGTGGTCCGGGATCAAAAG 58.835 55.000 12.49 0.00 0.00 2.27
3065 3215 0.768622 AGTGTGGTCCGGGATCAAAA 59.231 50.000 12.49 0.17 0.00 2.44
3066 3216 0.768622 AAGTGTGGTCCGGGATCAAA 59.231 50.000 12.49 3.14 0.00 2.69
3067 3217 0.768622 AAAGTGTGGTCCGGGATCAA 59.231 50.000 12.49 0.00 0.00 2.57
3068 3218 0.768622 AAAAGTGTGGTCCGGGATCA 59.231 50.000 5.72 5.72 0.00 2.92
3069 3219 1.450025 GAAAAGTGTGGTCCGGGATC 58.550 55.000 0.00 0.00 0.00 3.36
3070 3220 0.037734 GGAAAAGTGTGGTCCGGGAT 59.962 55.000 0.00 0.00 0.00 3.85
3071 3221 1.057851 AGGAAAAGTGTGGTCCGGGA 61.058 55.000 0.00 0.00 36.49 5.14
3072 3222 0.605589 GAGGAAAAGTGTGGTCCGGG 60.606 60.000 0.00 0.00 36.49 5.73
3073 3223 0.396811 AGAGGAAAAGTGTGGTCCGG 59.603 55.000 0.00 0.00 36.49 5.14
3074 3224 1.608283 GGAGAGGAAAAGTGTGGTCCG 60.608 57.143 0.00 0.00 36.49 4.79
3075 3225 1.420138 TGGAGAGGAAAAGTGTGGTCC 59.580 52.381 0.00 0.00 0.00 4.46
3076 3226 2.930826 TGGAGAGGAAAAGTGTGGTC 57.069 50.000 0.00 0.00 0.00 4.02
3077 3227 2.749800 GCTTGGAGAGGAAAAGTGTGGT 60.750 50.000 0.00 0.00 0.00 4.16
3078 3228 1.882623 GCTTGGAGAGGAAAAGTGTGG 59.117 52.381 0.00 0.00 0.00 4.17
3079 3229 2.291741 GTGCTTGGAGAGGAAAAGTGTG 59.708 50.000 0.00 0.00 0.00 3.82
3080 3230 2.576615 GTGCTTGGAGAGGAAAAGTGT 58.423 47.619 0.00 0.00 0.00 3.55
3081 3231 1.882623 GGTGCTTGGAGAGGAAAAGTG 59.117 52.381 0.00 0.00 0.00 3.16
3082 3232 1.777272 AGGTGCTTGGAGAGGAAAAGT 59.223 47.619 0.00 0.00 0.00 2.66
3083 3233 2.157738 CAGGTGCTTGGAGAGGAAAAG 58.842 52.381 0.00 0.00 0.00 2.27
3084 3234 1.819305 GCAGGTGCTTGGAGAGGAAAA 60.819 52.381 0.00 0.00 38.21 2.29
3085 3235 0.250901 GCAGGTGCTTGGAGAGGAAA 60.251 55.000 0.00 0.00 38.21 3.13
3086 3236 1.376466 GCAGGTGCTTGGAGAGGAA 59.624 57.895 0.00 0.00 38.21 3.36
3087 3237 2.596851 GGCAGGTGCTTGGAGAGGA 61.597 63.158 1.26 0.00 41.70 3.71
3088 3238 2.045536 GGCAGGTGCTTGGAGAGG 60.046 66.667 1.26 0.00 41.70 3.69
3089 3239 1.078567 GAGGCAGGTGCTTGGAGAG 60.079 63.158 1.26 0.00 41.70 3.20
3090 3240 2.596851 GGAGGCAGGTGCTTGGAGA 61.597 63.158 1.26 0.00 41.70 3.71
3091 3241 2.045536 GGAGGCAGGTGCTTGGAG 60.046 66.667 1.26 0.00 41.70 3.86
3092 3242 2.530151 AGGAGGCAGGTGCTTGGA 60.530 61.111 1.26 0.00 41.70 3.53
3093 3243 2.045536 GAGGAGGCAGGTGCTTGG 60.046 66.667 1.26 0.00 41.70 3.61
3094 3244 2.435586 CGAGGAGGCAGGTGCTTG 60.436 66.667 1.26 0.00 41.70 4.01
3095 3245 2.604686 TCGAGGAGGCAGGTGCTT 60.605 61.111 1.26 0.00 41.70 3.91
3096 3246 3.073735 CTCGAGGAGGCAGGTGCT 61.074 66.667 3.91 0.00 41.70 4.40
3097 3247 3.071206 TCTCGAGGAGGCAGGTGC 61.071 66.667 13.56 0.00 41.14 5.01
3098 3248 3.205395 CTCTCGAGGAGGCAGGTG 58.795 66.667 13.56 0.00 38.35 4.00
3107 3257 1.395826 AAAGCGGGATCCTCTCGAGG 61.396 60.000 13.56 6.63 44.60 4.63
3108 3258 0.031449 GAAAGCGGGATCCTCTCGAG 59.969 60.000 12.58 5.93 44.60 4.04
3109 3259 1.392710 GGAAAGCGGGATCCTCTCGA 61.393 60.000 12.58 0.00 44.60 4.04
3110 3260 1.068250 GGAAAGCGGGATCCTCTCG 59.932 63.158 12.58 8.17 44.64 4.04
3111 3261 1.705873 TAGGAAAGCGGGATCCTCTC 58.294 55.000 12.58 0.93 42.44 3.20
3112 3262 2.252714 GATAGGAAAGCGGGATCCTCT 58.747 52.381 12.58 6.48 42.44 3.69
3113 3263 1.276705 GGATAGGAAAGCGGGATCCTC 59.723 57.143 12.58 4.01 42.44 3.71
3115 3265 0.037232 CGGATAGGAAAGCGGGATCC 60.037 60.000 1.92 1.92 35.88 3.36
3116 3266 0.966920 TCGGATAGGAAAGCGGGATC 59.033 55.000 0.00 0.00 0.00 3.36
3117 3267 1.070289 GTTCGGATAGGAAAGCGGGAT 59.930 52.381 0.00 0.00 0.00 3.85
3118 3268 0.462789 GTTCGGATAGGAAAGCGGGA 59.537 55.000 0.00 0.00 0.00 5.14
3119 3269 0.532196 GGTTCGGATAGGAAAGCGGG 60.532 60.000 0.00 0.00 0.00 6.13
3120 3270 0.464452 AGGTTCGGATAGGAAAGCGG 59.536 55.000 0.00 0.00 0.00 5.52
3121 3271 2.361438 AGTAGGTTCGGATAGGAAAGCG 59.639 50.000 0.00 0.00 0.00 4.68
3122 3272 4.403585 AAGTAGGTTCGGATAGGAAAGC 57.596 45.455 0.00 0.00 0.00 3.51
3123 3273 5.975939 CGTAAAGTAGGTTCGGATAGGAAAG 59.024 44.000 0.00 0.00 0.00 2.62
3124 3274 5.418840 ACGTAAAGTAGGTTCGGATAGGAAA 59.581 40.000 0.00 0.00 0.00 3.13
3125 3275 4.949856 ACGTAAAGTAGGTTCGGATAGGAA 59.050 41.667 0.00 0.00 0.00 3.36
3126 3276 4.526970 ACGTAAAGTAGGTTCGGATAGGA 58.473 43.478 0.00 0.00 0.00 2.94
3127 3277 4.336433 TGACGTAAAGTAGGTTCGGATAGG 59.664 45.833 0.00 0.00 0.00 2.57
3128 3278 5.490139 TGACGTAAAGTAGGTTCGGATAG 57.510 43.478 0.00 0.00 0.00 2.08
3129 3279 7.094634 GGATATGACGTAAAGTAGGTTCGGATA 60.095 40.741 0.00 0.00 0.00 2.59
3130 3280 4.996788 ATGACGTAAAGTAGGTTCGGAT 57.003 40.909 0.00 0.00 0.00 4.18
3131 3281 5.009010 GGATATGACGTAAAGTAGGTTCGGA 59.991 44.000 0.00 0.00 0.00 4.55
3132 3282 5.218139 GGATATGACGTAAAGTAGGTTCGG 58.782 45.833 0.00 0.00 0.00 4.30
3133 3283 4.908156 CGGATATGACGTAAAGTAGGTTCG 59.092 45.833 0.00 0.00 0.00 3.95
3134 3284 6.064846 TCGGATATGACGTAAAGTAGGTTC 57.935 41.667 0.00 0.00 0.00 3.62
3135 3285 6.294397 GGATCGGATATGACGTAAAGTAGGTT 60.294 42.308 0.00 0.00 0.00 3.50
3136 3286 5.182760 GGATCGGATATGACGTAAAGTAGGT 59.817 44.000 0.00 0.00 0.00 3.08
3137 3287 5.415077 AGGATCGGATATGACGTAAAGTAGG 59.585 44.000 0.00 0.00 0.00 3.18
3138 3288 6.497785 AGGATCGGATATGACGTAAAGTAG 57.502 41.667 0.00 0.00 0.00 2.57
3139 3289 6.936335 TGTAGGATCGGATATGACGTAAAGTA 59.064 38.462 0.00 0.00 0.00 2.24
3140 3290 5.766670 TGTAGGATCGGATATGACGTAAAGT 59.233 40.000 0.00 0.00 0.00 2.66
3141 3291 6.250344 TGTAGGATCGGATATGACGTAAAG 57.750 41.667 0.00 0.00 0.00 1.85
3142 3292 6.349860 CCATGTAGGATCGGATATGACGTAAA 60.350 42.308 0.00 0.00 41.22 2.01
3143 3293 5.124936 CCATGTAGGATCGGATATGACGTAA 59.875 44.000 0.00 0.00 41.22 3.18
3144 3294 4.638865 CCATGTAGGATCGGATATGACGTA 59.361 45.833 0.00 0.00 41.22 3.57
3145 3295 3.444034 CCATGTAGGATCGGATATGACGT 59.556 47.826 0.00 0.00 41.22 4.34
3146 3296 3.735208 GCCATGTAGGATCGGATATGACG 60.735 52.174 0.00 0.00 41.22 4.35
3147 3297 3.195610 TGCCATGTAGGATCGGATATGAC 59.804 47.826 0.00 0.00 41.22 3.06
3148 3298 3.440127 TGCCATGTAGGATCGGATATGA 58.560 45.455 0.00 0.00 41.22 2.15
3149 3299 3.893326 TGCCATGTAGGATCGGATATG 57.107 47.619 0.00 0.00 41.22 1.78
3150 3300 3.432749 GCATGCCATGTAGGATCGGATAT 60.433 47.826 6.36 0.00 41.22 1.63
3151 3301 2.093500 GCATGCCATGTAGGATCGGATA 60.093 50.000 6.36 0.00 41.22 2.59
3152 3302 1.339438 GCATGCCATGTAGGATCGGAT 60.339 52.381 6.36 0.00 41.22 4.18
3153 3303 0.035317 GCATGCCATGTAGGATCGGA 59.965 55.000 6.36 0.00 41.22 4.55
3154 3304 1.293963 CGCATGCCATGTAGGATCGG 61.294 60.000 13.15 0.00 41.22 4.18
3155 3305 0.319813 TCGCATGCCATGTAGGATCG 60.320 55.000 13.15 0.23 41.22 3.69
3156 3306 1.436600 CTCGCATGCCATGTAGGATC 58.563 55.000 13.15 0.00 41.22 3.36
3157 3307 0.035881 CCTCGCATGCCATGTAGGAT 59.964 55.000 18.19 0.00 41.22 3.24
3158 3308 1.447217 CCTCGCATGCCATGTAGGA 59.553 57.895 18.19 8.22 41.22 2.94
3159 3309 2.256591 GCCTCGCATGCCATGTAGG 61.257 63.158 18.53 18.53 38.09 3.18
3160 3310 1.524393 TGCCTCGCATGCCATGTAG 60.524 57.895 13.15 4.55 31.71 2.74
3161 3311 2.588989 TGCCTCGCATGCCATGTA 59.411 55.556 13.15 0.00 31.71 2.29
3170 3320 3.002583 TCAGGGTGATGCCTCGCA 61.003 61.111 4.90 0.00 44.86 5.10
3171 3321 2.202987 CTCAGGGTGATGCCTCGC 60.203 66.667 0.00 0.00 37.43 5.03
3172 3322 2.503061 CCTCAGGGTGATGCCTCG 59.497 66.667 0.00 0.00 37.43 4.63
3173 3323 1.050988 TAGCCTCAGGGTGATGCCTC 61.051 60.000 5.37 0.00 38.54 4.70
3174 3324 0.401105 ATAGCCTCAGGGTGATGCCT 60.401 55.000 5.37 0.00 38.54 4.75
3175 3325 0.250640 CATAGCCTCAGGGTGATGCC 60.251 60.000 5.37 0.00 38.54 4.40
3176 3326 0.888285 GCATAGCCTCAGGGTGATGC 60.888 60.000 16.57 16.57 41.72 3.91
3177 3327 0.471191 TGCATAGCCTCAGGGTGATG 59.529 55.000 5.37 6.81 34.28 3.07
3178 3328 1.442773 ATGCATAGCCTCAGGGTGAT 58.557 50.000 5.37 0.00 34.28 3.06
3179 3329 1.134007 CAATGCATAGCCTCAGGGTGA 60.134 52.381 5.37 0.00 34.28 4.02
3180 3330 1.315690 CAATGCATAGCCTCAGGGTG 58.684 55.000 5.37 0.00 34.28 4.61
3181 3331 0.921896 ACAATGCATAGCCTCAGGGT 59.078 50.000 0.00 0.00 37.19 4.34
3182 3332 2.158769 TGTACAATGCATAGCCTCAGGG 60.159 50.000 0.00 0.00 0.00 4.45
3183 3333 3.198409 TGTACAATGCATAGCCTCAGG 57.802 47.619 0.00 0.00 0.00 3.86
3184 3334 3.058432 GCATGTACAATGCATAGCCTCAG 60.058 47.826 19.12 0.00 44.00 3.35
3185 3335 2.880268 GCATGTACAATGCATAGCCTCA 59.120 45.455 19.12 0.00 44.00 3.86
3186 3336 2.227388 GGCATGTACAATGCATAGCCTC 59.773 50.000 22.92 7.94 46.21 4.70
3187 3337 2.233271 GGCATGTACAATGCATAGCCT 58.767 47.619 22.92 0.00 46.21 4.58
3188 3338 1.270550 GGGCATGTACAATGCATAGCC 59.729 52.381 22.92 16.30 46.21 3.93
3189 3339 2.233271 AGGGCATGTACAATGCATAGC 58.767 47.619 22.92 11.42 46.21 2.97
3190 3340 5.474532 ACATTAGGGCATGTACAATGCATAG 59.525 40.000 22.92 13.08 46.21 2.23
3191 3341 5.384336 ACATTAGGGCATGTACAATGCATA 58.616 37.500 22.92 15.58 46.21 3.14
3192 3342 4.217510 ACATTAGGGCATGTACAATGCAT 58.782 39.130 22.92 16.26 46.21 3.96
3193 3343 3.630168 ACATTAGGGCATGTACAATGCA 58.370 40.909 22.92 0.00 46.21 3.96
3224 3374 4.476297 TGGAGTTACTGGAACACACTAGA 58.524 43.478 5.41 0.00 40.86 2.43
3244 3394 3.282885 GGGTCCAGCTAAATCTTTCTGG 58.717 50.000 0.92 0.92 45.59 3.86
3263 3413 5.617751 CGCAAGAATCTACTTTTGAACTGGG 60.618 44.000 0.00 0.00 43.02 4.45
3348 3498 2.748058 ATCGTGAAGGCAGGGCGTTT 62.748 55.000 0.00 0.00 36.76 3.60
3351 3501 3.197790 CATCGTGAAGGCAGGGCG 61.198 66.667 0.00 0.00 0.00 6.13
3405 3555 2.681344 ACTTTTGTTCTCCACCGTGAAC 59.319 45.455 0.00 0.00 41.03 3.18
3487 3637 2.630580 GTGGAGAGGTTTCACAGTCTCT 59.369 50.000 0.00 0.00 39.07 3.10
3492 3642 3.070159 TCTGAAGTGGAGAGGTTTCACAG 59.930 47.826 0.00 0.00 34.17 3.66
3493 3643 3.038280 TCTGAAGTGGAGAGGTTTCACA 58.962 45.455 0.00 0.00 34.17 3.58
3494 3644 3.070302 AGTCTGAAGTGGAGAGGTTTCAC 59.930 47.826 0.00 0.00 0.00 3.18
3506 3656 2.067766 GCAGCTCTGAAGTCTGAAGTG 58.932 52.381 0.29 0.00 31.98 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.