Multiple sequence alignment - TraesCS3D01G340400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G340400 chr3D 100.000 3982 0 0 1 3982 454153489 454149508 0.000000e+00 7354.0
1 TraesCS3D01G340400 chr3D 79.420 345 56 13 3629 3969 577835928 577835595 3.100000e-56 230.0
2 TraesCS3D01G340400 chr3D 74.306 432 68 21 3547 3957 3765312 3765721 4.150000e-30 143.0
3 TraesCS3D01G340400 chr3B 92.533 2799 131 41 515 3265 596601460 596598692 0.000000e+00 3940.0
4 TraesCS3D01G340400 chr3B 86.610 351 38 3 97 439 596602014 596601665 2.900000e-101 379.0
5 TraesCS3D01G340400 chr3B 88.034 117 6 5 3251 3366 596595673 596595564 8.980000e-27 132.0
6 TraesCS3D01G340400 chr3A 91.678 2848 126 43 615 3402 595964156 595961360 0.000000e+00 3843.0
7 TraesCS3D01G340400 chr3A 89.185 601 40 11 3388 3982 595959479 595958898 0.000000e+00 726.0
8 TraesCS3D01G340400 chr2D 90.244 41 4 0 3838 3878 479056979 479056939 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G340400 chr3D 454149508 454153489 3981 True 7354.000000 7354 100.0000 1 3982 1 chr3D.!!$R1 3981
1 TraesCS3D01G340400 chr3B 596595564 596602014 6450 True 1483.666667 3940 89.0590 97 3366 3 chr3B.!!$R1 3269
2 TraesCS3D01G340400 chr3A 595958898 595964156 5258 True 2284.500000 3843 90.4315 615 3982 2 chr3A.!!$R1 3367

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
629 772 0.038251 AGATCACTTTGCGCGACAGA 60.038 50.0 12.10 1.44 0.0 3.41 F
988 1134 0.540923 CTCCCTCTCCCTCTTGCTTG 59.459 60.0 0.00 0.00 0.0 4.01 F
2817 3019 0.105039 CTGGCCTAATCCGACACCTC 59.895 60.0 3.32 0.00 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1983 2181 1.216977 CGGCCGATGTGTACCTCAA 59.783 57.895 24.07 0.00 0.00 3.02 R
2894 3097 0.527169 CGATGCTGCTCGTGATCACT 60.527 55.000 22.95 1.85 34.00 3.41 R
3618 8770 4.543658 CGTGCTTTCGAAAACTGAAAAACG 60.544 41.667 12.41 8.37 38.23 3.60 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.773510 GAATTCAACGAAACAGGAGACAC 58.226 43.478 0.00 0.00 0.00 3.67
23 24 2.234300 TCAACGAAACAGGAGACACC 57.766 50.000 0.00 0.00 39.35 4.16
24 25 1.483004 TCAACGAAACAGGAGACACCA 59.517 47.619 0.00 0.00 42.04 4.17
25 26 2.104111 TCAACGAAACAGGAGACACCAT 59.896 45.455 0.00 0.00 42.04 3.55
26 27 2.457366 ACGAAACAGGAGACACCATC 57.543 50.000 0.00 0.00 42.04 3.51
27 28 1.691976 ACGAAACAGGAGACACCATCA 59.308 47.619 0.00 0.00 42.04 3.07
28 29 2.069273 CGAAACAGGAGACACCATCAC 58.931 52.381 0.00 0.00 42.04 3.06
29 30 2.547855 CGAAACAGGAGACACCATCACA 60.548 50.000 0.00 0.00 42.04 3.58
30 31 3.679389 GAAACAGGAGACACCATCACAT 58.321 45.455 0.00 0.00 42.04 3.21
31 32 3.795688 AACAGGAGACACCATCACATT 57.204 42.857 0.00 0.00 42.04 2.71
32 33 4.908601 AACAGGAGACACCATCACATTA 57.091 40.909 0.00 0.00 42.04 1.90
33 34 4.207891 ACAGGAGACACCATCACATTAC 57.792 45.455 0.00 0.00 42.04 1.89
34 35 3.840666 ACAGGAGACACCATCACATTACT 59.159 43.478 0.00 0.00 42.04 2.24
35 36 4.287067 ACAGGAGACACCATCACATTACTT 59.713 41.667 0.00 0.00 42.04 2.24
36 37 4.872691 CAGGAGACACCATCACATTACTTC 59.127 45.833 0.00 0.00 42.04 3.01
37 38 4.080863 AGGAGACACCATCACATTACTTCC 60.081 45.833 0.00 0.00 42.04 3.46
38 39 4.192317 GAGACACCATCACATTACTTCCC 58.808 47.826 0.00 0.00 0.00 3.97
39 40 2.936498 GACACCATCACATTACTTCCCG 59.064 50.000 0.00 0.00 0.00 5.14
40 41 2.304761 ACACCATCACATTACTTCCCGT 59.695 45.455 0.00 0.00 0.00 5.28
41 42 3.244770 ACACCATCACATTACTTCCCGTT 60.245 43.478 0.00 0.00 0.00 4.44
42 43 3.126858 CACCATCACATTACTTCCCGTTG 59.873 47.826 0.00 0.00 0.00 4.10
43 44 3.008594 ACCATCACATTACTTCCCGTTGA 59.991 43.478 0.00 0.00 0.00 3.18
44 45 4.199310 CCATCACATTACTTCCCGTTGAT 58.801 43.478 0.00 0.00 0.00 2.57
45 46 4.035558 CCATCACATTACTTCCCGTTGATG 59.964 45.833 0.00 0.00 37.10 3.07
46 47 4.280436 TCACATTACTTCCCGTTGATGT 57.720 40.909 0.00 0.00 33.89 3.06
47 48 4.250464 TCACATTACTTCCCGTTGATGTC 58.750 43.478 0.00 0.00 32.34 3.06
48 49 3.062099 CACATTACTTCCCGTTGATGTCG 59.938 47.826 0.00 0.00 32.34 4.35
49 50 1.717194 TTACTTCCCGTTGATGTCGC 58.283 50.000 0.00 0.00 33.70 5.19
50 51 0.604073 TACTTCCCGTTGATGTCGCA 59.396 50.000 0.00 0.00 33.70 5.10
51 52 0.949105 ACTTCCCGTTGATGTCGCAC 60.949 55.000 0.00 0.00 0.00 5.34
52 53 1.635663 CTTCCCGTTGATGTCGCACC 61.636 60.000 0.00 0.00 0.00 5.01
53 54 2.358125 CCCGTTGATGTCGCACCA 60.358 61.111 0.00 0.00 0.00 4.17
54 55 1.745115 CCCGTTGATGTCGCACCAT 60.745 57.895 0.00 0.00 0.00 3.55
55 56 1.705337 CCCGTTGATGTCGCACCATC 61.705 60.000 5.80 5.80 41.32 3.51
56 57 0.740868 CCGTTGATGTCGCACCATCT 60.741 55.000 12.33 0.00 41.47 2.90
57 58 0.647410 CGTTGATGTCGCACCATCTC 59.353 55.000 12.33 6.34 41.47 2.75
58 59 0.647410 GTTGATGTCGCACCATCTCG 59.353 55.000 12.33 0.00 41.47 4.04
59 60 0.246360 TTGATGTCGCACCATCTCGT 59.754 50.000 12.33 0.00 41.47 4.18
60 61 0.179137 TGATGTCGCACCATCTCGTC 60.179 55.000 12.33 0.00 41.47 4.20
61 62 0.872021 GATGTCGCACCATCTCGTCC 60.872 60.000 5.56 0.00 38.54 4.79
62 63 1.604147 ATGTCGCACCATCTCGTCCA 61.604 55.000 0.00 0.00 0.00 4.02
63 64 1.141881 GTCGCACCATCTCGTCCAT 59.858 57.895 0.00 0.00 0.00 3.41
64 65 1.141665 TCGCACCATCTCGTCCATG 59.858 57.895 0.00 0.00 0.00 3.66
65 66 1.884464 CGCACCATCTCGTCCATGG 60.884 63.158 4.97 4.97 45.74 3.66
69 70 3.861341 CCATCTCGTCCATGGTTGT 57.139 52.632 12.58 0.00 36.74 3.32
70 71 1.656652 CCATCTCGTCCATGGTTGTC 58.343 55.000 12.58 0.52 36.74 3.18
71 72 1.280982 CATCTCGTCCATGGTTGTCG 58.719 55.000 12.58 12.45 0.00 4.35
72 73 0.895530 ATCTCGTCCATGGTTGTCGT 59.104 50.000 12.58 0.00 0.00 4.34
73 74 0.038618 TCTCGTCCATGGTTGTCGTG 60.039 55.000 12.58 12.78 0.00 4.35
74 75 1.626654 CTCGTCCATGGTTGTCGTGC 61.627 60.000 12.58 0.00 0.00 5.34
75 76 2.677003 CGTCCATGGTTGTCGTGCC 61.677 63.158 12.58 0.00 0.00 5.01
76 77 2.033448 TCCATGGTTGTCGTGCCC 59.967 61.111 12.58 0.00 0.00 5.36
77 78 3.430862 CCATGGTTGTCGTGCCCG 61.431 66.667 2.57 0.00 0.00 6.13
78 79 3.430862 CATGGTTGTCGTGCCCGG 61.431 66.667 0.00 0.00 33.95 5.73
89 90 3.988525 TGCCCGGCACAACAATGC 61.989 61.111 8.43 0.00 45.34 3.56
101 102 2.233271 CAACAATGCCTTGTGACCTCT 58.767 47.619 8.20 0.00 44.83 3.69
105 106 1.495579 ATGCCTTGTGACCTCTGCCT 61.496 55.000 0.00 0.00 0.00 4.75
109 110 2.114616 CCTTGTGACCTCTGCCTAGAT 58.885 52.381 0.00 0.00 31.21 1.98
120 121 4.380023 CCTCTGCCTAGATAACATAGTCGC 60.380 50.000 0.00 0.00 31.21 5.19
173 176 2.920384 TCACCGCTGCCACACCTA 60.920 61.111 0.00 0.00 0.00 3.08
179 182 1.343142 CCGCTGCCACACCTACATATA 59.657 52.381 0.00 0.00 0.00 0.86
212 215 1.437573 CGACGCTGGCTAGATTCCA 59.562 57.895 0.00 0.00 0.00 3.53
216 219 1.069823 ACGCTGGCTAGATTCCATGAG 59.930 52.381 0.00 0.00 32.37 2.90
231 234 2.592861 GAGATCCCCATGCACGCC 60.593 66.667 0.00 0.00 0.00 5.68
248 251 4.809496 CGCCCAAGCCAGCCATCT 62.809 66.667 0.00 0.00 34.57 2.90
266 269 2.195727 TCTATGGTCAGATGCAACCCA 58.804 47.619 2.86 0.00 34.47 4.51
309 312 1.386772 ACCACCCCCTCCAAAGTGA 60.387 57.895 0.00 0.00 31.79 3.41
312 315 0.967380 CACCCCCTCCAAAGTGATGC 60.967 60.000 0.00 0.00 31.79 3.91
318 321 0.449388 CTCCAAAGTGATGCTTCGGC 59.551 55.000 0.00 0.00 36.17 5.54
321 324 0.877071 CAAAGTGATGCTTCGGCTGT 59.123 50.000 0.00 0.00 42.37 4.40
325 328 0.108424 GTGATGCTTCGGCTGTCTCT 60.108 55.000 0.00 0.00 42.37 3.10
326 329 0.108472 TGATGCTTCGGCTGTCTCTG 60.108 55.000 0.00 0.00 42.37 3.35
328 331 2.047844 GCTTCGGCTGTCTCTGCA 60.048 61.111 0.00 0.00 38.08 4.41
335 338 1.005630 GCTGTCTCTGCAACGAGGT 60.006 57.895 3.36 0.00 0.00 3.85
359 368 4.748144 CCCCCTTCACCAGCAGCC 62.748 72.222 0.00 0.00 0.00 4.85
403 412 0.468400 GATGAGAGGAGTAGGGCGGT 60.468 60.000 0.00 0.00 0.00 5.68
412 421 1.739196 GTAGGGCGGTCGTGGAAAC 60.739 63.158 0.00 0.00 0.00 2.78
482 600 8.594881 AATTAACGTATCATGATCTGAACCTC 57.405 34.615 12.53 0.00 37.44 3.85
487 605 4.703379 ATCATGATCTGAACCTCCTTCC 57.297 45.455 1.18 0.00 37.44 3.46
568 711 4.186856 TCATGATCTGCACGTCACTAAA 57.813 40.909 0.00 0.00 0.00 1.85
576 719 4.447724 TCTGCACGTCACTAAATCACTTTC 59.552 41.667 0.00 0.00 0.00 2.62
581 724 4.989168 ACGTCACTAAATCACTTTCACTCC 59.011 41.667 0.00 0.00 0.00 3.85
601 744 8.318412 TCACTCCAATAGTTTAGTGATGCTAAA 58.682 33.333 0.00 0.00 44.71 1.85
612 755 5.939764 AGTGATGCTAAATGGTCTGTAGA 57.060 39.130 0.00 0.00 0.00 2.59
619 762 6.711277 TGCTAAATGGTCTGTAGATCACTTT 58.289 36.000 0.00 3.27 38.10 2.66
620 763 6.595326 TGCTAAATGGTCTGTAGATCACTTTG 59.405 38.462 0.00 0.00 38.10 2.77
621 764 5.886960 AAATGGTCTGTAGATCACTTTGC 57.113 39.130 0.00 0.00 38.10 3.68
622 765 2.959516 TGGTCTGTAGATCACTTTGCG 58.040 47.619 0.00 0.00 28.64 4.85
623 766 1.661112 GGTCTGTAGATCACTTTGCGC 59.339 52.381 0.00 0.00 0.00 6.09
625 768 1.201414 TCTGTAGATCACTTTGCGCGA 59.799 47.619 12.10 0.00 0.00 5.87
626 769 1.321743 CTGTAGATCACTTTGCGCGAC 59.678 52.381 12.10 0.88 0.00 5.19
627 770 1.336424 TGTAGATCACTTTGCGCGACA 60.336 47.619 12.10 4.31 0.00 4.35
628 771 1.321743 GTAGATCACTTTGCGCGACAG 59.678 52.381 12.10 3.84 0.00 3.51
629 772 0.038251 AGATCACTTTGCGCGACAGA 60.038 50.000 12.10 1.44 0.00 3.41
632 775 1.010580 TCACTTTGCGCGACAGAAAA 58.989 45.000 12.10 0.53 0.00 2.29
663 806 0.725784 CACGCGAAACACATTCCAGC 60.726 55.000 15.93 0.00 34.34 4.85
695 838 4.584327 AGAAAATGGTTTTGAACGGGAG 57.416 40.909 0.00 0.00 31.94 4.30
698 841 1.534729 ATGGTTTTGAACGGGAGAGC 58.465 50.000 0.00 0.00 0.00 4.09
710 854 2.125753 GAGAGCAGGCCACGTCTG 60.126 66.667 5.01 0.00 38.44 3.51
730 874 1.536149 GTTGTCTGTAGCGCTACTCG 58.464 55.000 38.89 30.40 42.12 4.18
976 1122 2.757917 GCGGTGCTCTCTCCCTCT 60.758 66.667 0.00 0.00 0.00 3.69
988 1134 0.540923 CTCCCTCTCCCTCTTGCTTG 59.459 60.000 0.00 0.00 0.00 4.01
1074 1222 4.774503 GAAGCGCTCCTGCTGCCT 62.775 66.667 12.06 0.00 46.60 4.75
1094 1242 4.754667 GCACGAAGTCGGGGACCC 62.755 72.222 0.03 0.03 45.84 4.46
1422 1570 2.163818 TCATCGGTAATCAATCCCGC 57.836 50.000 0.00 0.00 41.46 6.13
1425 1573 0.677288 TCGGTAATCAATCCCGCGAT 59.323 50.000 8.23 0.00 41.46 4.58
1426 1574 0.790207 CGGTAATCAATCCCGCGATG 59.210 55.000 8.23 0.63 34.62 3.84
1686 1861 2.286106 CTCGAATCGAGCACAGCTG 58.714 57.895 20.08 13.48 46.75 4.24
1730 1918 5.344207 ACACTCAAAGACGTAGCAAATTC 57.656 39.130 0.00 0.00 0.00 2.17
1744 1932 9.233232 ACGTAGCAAATTCTTTTGTCTAAAAAG 57.767 29.630 4.54 4.54 43.43 2.27
1867 2063 2.553602 TCGTGCTGCATCTTTGATTGTT 59.446 40.909 5.27 0.00 0.00 2.83
1868 2064 3.004629 TCGTGCTGCATCTTTGATTGTTT 59.995 39.130 5.27 0.00 0.00 2.83
1869 2065 4.215185 TCGTGCTGCATCTTTGATTGTTTA 59.785 37.500 5.27 0.00 0.00 2.01
1927 2125 2.306512 GGGAATGTACCACTACCACCAA 59.693 50.000 0.00 0.00 0.00 3.67
1953 2151 6.576185 AGAGTTGCAATGACAAAACAAGATT 58.424 32.000 0.59 0.00 0.00 2.40
1983 2181 7.081976 GGTTACTGTAAATTTTGCAGATTCGT 58.918 34.615 27.18 12.35 44.85 3.85
2111 2309 2.125912 CTGCCGGACTTCTCCACG 60.126 66.667 5.05 0.00 36.12 4.94
2242 2443 5.294552 GCTTTCAAATATTCGAGGCTGTACT 59.705 40.000 0.00 0.00 0.00 2.73
2258 2459 1.135460 GTACTGTACAGCTCACCGGTC 60.135 57.143 22.90 0.00 0.00 4.79
2551 2753 3.438088 GTCAACGTCGACGAGCTG 58.562 61.111 41.52 31.04 43.02 4.24
2725 2927 2.586245 CTCATCTTCCCTGGCGCA 59.414 61.111 10.83 0.00 0.00 6.09
2785 2987 6.862209 ACAACAAGCACATAAAACTTTCAGA 58.138 32.000 0.00 0.00 0.00 3.27
2786 2988 7.319646 ACAACAAGCACATAAAACTTTCAGAA 58.680 30.769 0.00 0.00 0.00 3.02
2817 3019 0.105039 CTGGCCTAATCCGACACCTC 59.895 60.000 3.32 0.00 0.00 3.85
2843 3046 1.559368 TTTGCAGGGATGTTCATGGG 58.441 50.000 0.00 0.00 0.00 4.00
2858 3061 2.365617 TCATGGGATAGCGAAGAGGAAC 59.634 50.000 0.00 0.00 0.00 3.62
2894 3097 1.539712 GCGATGATGATCACTCTGGCA 60.540 52.381 0.00 0.00 0.00 4.92
2918 3121 2.587194 ACGAGCAGCATCGCCATC 60.587 61.111 12.44 0.00 46.60 3.51
2965 3168 1.804748 GGGCGAAGTGAAAGGTGTTAG 59.195 52.381 0.00 0.00 0.00 2.34
3073 3288 5.461032 TTAGGTTTTGATCGTGGCAAATT 57.539 34.783 0.00 0.00 35.41 1.82
3143 3364 5.216648 CCGTTGTTGTATAAAACAGTTGGG 58.783 41.667 8.47 5.60 40.93 4.12
3144 3365 5.008811 CCGTTGTTGTATAAAACAGTTGGGA 59.991 40.000 8.47 0.00 40.93 4.37
3145 3366 6.459848 CCGTTGTTGTATAAAACAGTTGGGAA 60.460 38.462 8.47 0.00 40.93 3.97
3146 3367 6.635239 CGTTGTTGTATAAAACAGTTGGGAAG 59.365 38.462 8.47 0.00 40.93 3.46
3147 3368 6.642707 TGTTGTATAAAACAGTTGGGAAGG 57.357 37.500 4.25 0.00 39.87 3.46
3160 3381 4.017499 AGTTGGGAAGGCATACATTTACCT 60.017 41.667 0.00 0.00 0.00 3.08
3162 3383 4.941713 TGGGAAGGCATACATTTACCTTT 58.058 39.130 0.00 0.00 42.54 3.11
3163 3384 4.709397 TGGGAAGGCATACATTTACCTTTG 59.291 41.667 0.00 0.00 42.54 2.77
3164 3385 4.709886 GGGAAGGCATACATTTACCTTTGT 59.290 41.667 0.00 0.00 42.54 2.83
3165 3386 5.889289 GGGAAGGCATACATTTACCTTTGTA 59.111 40.000 0.00 0.00 42.54 2.41
3166 3387 6.549736 GGGAAGGCATACATTTACCTTTGTAT 59.450 38.462 0.00 0.00 42.54 2.29
3167 3388 7.722285 GGGAAGGCATACATTTACCTTTGTATA 59.278 37.037 0.00 0.00 42.54 1.47
3168 3389 9.127277 GGAAGGCATACATTTACCTTTGTATAA 57.873 33.333 0.00 0.00 42.54 0.98
3200 3421 2.310577 CGAAGAAAAAGAGCGCCTTTG 58.689 47.619 19.93 8.45 43.90 2.77
3220 3441 1.873591 GGTCAGACGAATTTGCTGTGT 59.126 47.619 13.47 0.00 0.00 3.72
3231 3452 6.532302 ACGAATTTGCTGTGTATACGATGTTA 59.468 34.615 0.00 0.00 0.00 2.41
3243 3465 6.976349 TGTATACGATGTTAATGTCTGACACC 59.024 38.462 13.50 2.42 0.00 4.16
3298 6553 1.315257 GCTGATGATGGCCACCGTTT 61.315 55.000 8.16 0.00 0.00 3.60
3299 6554 0.734889 CTGATGATGGCCACCGTTTC 59.265 55.000 8.16 0.71 0.00 2.78
3302 6557 0.608035 ATGATGGCCACCGTTTCGTT 60.608 50.000 8.16 0.00 0.00 3.85
3308 6563 1.605202 GGCCACCGTTTCGTTAGTGTA 60.605 52.381 0.00 0.00 0.00 2.90
3309 6564 1.456923 GCCACCGTTTCGTTAGTGTAC 59.543 52.381 0.00 0.00 0.00 2.90
3321 6576 6.990341 TCGTTAGTGTACATACAGCTTCTA 57.010 37.500 0.00 0.00 36.78 2.10
3322 6577 7.381766 TCGTTAGTGTACATACAGCTTCTAA 57.618 36.000 0.00 0.00 36.78 2.10
3323 6578 7.993101 TCGTTAGTGTACATACAGCTTCTAAT 58.007 34.615 0.00 0.00 36.78 1.73
3324 6579 8.464404 TCGTTAGTGTACATACAGCTTCTAATT 58.536 33.333 0.00 0.00 36.78 1.40
3378 6633 9.886132 ATAAAATCACTTCTACTTCGGTACAAT 57.114 29.630 0.00 0.00 0.00 2.71
3379 6634 7.829378 AAATCACTTCTACTTCGGTACAATC 57.171 36.000 0.00 0.00 0.00 2.67
3381 6636 6.585695 TCACTTCTACTTCGGTACAATCTT 57.414 37.500 0.00 0.00 0.00 2.40
3404 8553 6.918892 TCTAAACACATCAATAATCACCCG 57.081 37.500 0.00 0.00 0.00 5.28
3449 8598 2.094182 GCATCAAACTCGAGACCTACCA 60.094 50.000 21.68 0.00 0.00 3.25
3490 8639 3.073274 ACCATTAGAACCAACCAGCTC 57.927 47.619 0.00 0.00 0.00 4.09
3507 8659 2.128035 GCTCTGGTGATGTACATACGC 58.872 52.381 8.71 9.00 0.00 4.42
3511 8663 1.205893 TGGTGATGTACATACGCAGCA 59.794 47.619 18.63 18.63 38.41 4.41
3529 8681 4.201724 GCAGCACGGTTTCTTATCAACTAG 60.202 45.833 0.00 0.00 0.00 2.57
3531 8683 5.062308 CAGCACGGTTTCTTATCAACTAGAC 59.938 44.000 0.00 0.00 0.00 2.59
3536 8688 5.805994 CGGTTTCTTATCAACTAGACTGGAC 59.194 44.000 0.00 0.00 0.00 4.02
3542 8694 6.538021 TCTTATCAACTAGACTGGACGTACTC 59.462 42.308 0.00 0.00 0.00 2.59
3545 8697 5.798132 TCAACTAGACTGGACGTACTCTAA 58.202 41.667 0.00 0.00 0.00 2.10
3549 8701 4.283363 AGACTGGACGTACTCTAACAGA 57.717 45.455 0.00 0.00 0.00 3.41
3563 8715 4.318332 TCTAACAGATCAAACCAGCACTG 58.682 43.478 0.00 0.00 0.00 3.66
3618 8770 2.294512 GAGGGGCAATTGTAGCTAATGC 59.705 50.000 7.40 11.55 40.05 3.56
3625 8777 5.220209 GGCAATTGTAGCTAATGCGTTTTTC 60.220 40.000 7.40 0.00 45.42 2.29
3632 8784 6.635239 TGTAGCTAATGCGTTTTTCAGTTTTC 59.365 34.615 0.00 0.00 45.42 2.29
3638 8790 3.302170 TGCGTTTTTCAGTTTTCGAAAGC 59.698 39.130 16.03 16.03 34.07 3.51
3655 8807 5.573282 TCGAAAGCACGAATGTTTTTCAAAA 59.427 32.000 0.00 0.00 39.13 2.44
3656 8808 6.089551 TCGAAAGCACGAATGTTTTTCAAAAA 59.910 30.769 0.00 0.00 39.13 1.94
3698 8850 7.595819 AATATGAACTTCTTTTGGGAACACA 57.404 32.000 0.00 0.00 42.67 3.72
3699 8851 5.930837 ATGAACTTCTTTTGGGAACACAA 57.069 34.783 0.00 0.00 42.67 3.33
3700 8852 5.930837 TGAACTTCTTTTGGGAACACAAT 57.069 34.783 0.00 0.00 42.67 2.71
3880 9034 8.829612 ACATTTTCTGGAAAACATGAACAATTC 58.170 29.630 10.16 0.00 42.32 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.319549 GGTGTCTCCTGTTTCGTTGAATTC 60.320 45.833 0.00 0.00 0.00 2.17
1 2 3.564225 GGTGTCTCCTGTTTCGTTGAATT 59.436 43.478 0.00 0.00 0.00 2.17
2 3 3.139077 GGTGTCTCCTGTTTCGTTGAAT 58.861 45.455 0.00 0.00 0.00 2.57
3 4 2.093394 TGGTGTCTCCTGTTTCGTTGAA 60.093 45.455 0.00 0.00 37.07 2.69
4 5 1.483004 TGGTGTCTCCTGTTTCGTTGA 59.517 47.619 0.00 0.00 37.07 3.18
5 6 1.948104 TGGTGTCTCCTGTTTCGTTG 58.052 50.000 0.00 0.00 37.07 4.10
6 7 2.104111 TGATGGTGTCTCCTGTTTCGTT 59.896 45.455 0.00 0.00 37.07 3.85
7 8 1.691976 TGATGGTGTCTCCTGTTTCGT 59.308 47.619 0.00 0.00 37.07 3.85
8 9 2.069273 GTGATGGTGTCTCCTGTTTCG 58.931 52.381 0.00 0.00 37.07 3.46
9 10 3.126001 TGTGATGGTGTCTCCTGTTTC 57.874 47.619 0.00 0.00 37.07 2.78
10 11 3.795688 ATGTGATGGTGTCTCCTGTTT 57.204 42.857 0.00 0.00 37.07 2.83
11 12 3.795688 AATGTGATGGTGTCTCCTGTT 57.204 42.857 0.00 0.00 37.07 3.16
12 13 3.840666 AGTAATGTGATGGTGTCTCCTGT 59.159 43.478 0.00 0.00 37.07 4.00
13 14 4.478206 AGTAATGTGATGGTGTCTCCTG 57.522 45.455 0.00 0.00 37.07 3.86
14 15 4.080863 GGAAGTAATGTGATGGTGTCTCCT 60.081 45.833 0.00 0.00 37.07 3.69
15 16 4.192317 GGAAGTAATGTGATGGTGTCTCC 58.808 47.826 0.00 0.00 0.00 3.71
16 17 4.192317 GGGAAGTAATGTGATGGTGTCTC 58.808 47.826 0.00 0.00 0.00 3.36
17 18 3.369471 CGGGAAGTAATGTGATGGTGTCT 60.369 47.826 0.00 0.00 0.00 3.41
18 19 2.936498 CGGGAAGTAATGTGATGGTGTC 59.064 50.000 0.00 0.00 0.00 3.67
19 20 2.304761 ACGGGAAGTAATGTGATGGTGT 59.695 45.455 0.00 0.00 0.00 4.16
20 21 2.985896 ACGGGAAGTAATGTGATGGTG 58.014 47.619 0.00 0.00 0.00 4.17
21 22 3.008594 TCAACGGGAAGTAATGTGATGGT 59.991 43.478 0.00 0.00 0.00 3.55
22 23 3.605634 TCAACGGGAAGTAATGTGATGG 58.394 45.455 0.00 0.00 0.00 3.51
23 24 4.635765 ACATCAACGGGAAGTAATGTGATG 59.364 41.667 8.73 8.73 44.16 3.07
24 25 4.843728 ACATCAACGGGAAGTAATGTGAT 58.156 39.130 0.00 0.00 29.34 3.06
25 26 4.250464 GACATCAACGGGAAGTAATGTGA 58.750 43.478 0.00 0.00 0.00 3.58
26 27 3.062099 CGACATCAACGGGAAGTAATGTG 59.938 47.826 0.00 0.00 0.00 3.21
27 28 3.259064 CGACATCAACGGGAAGTAATGT 58.741 45.455 0.00 0.00 0.00 2.71
28 29 2.030457 GCGACATCAACGGGAAGTAATG 59.970 50.000 0.00 0.00 0.00 1.90
29 30 2.277084 GCGACATCAACGGGAAGTAAT 58.723 47.619 0.00 0.00 0.00 1.89
30 31 1.001068 TGCGACATCAACGGGAAGTAA 59.999 47.619 0.00 0.00 0.00 2.24
31 32 0.604073 TGCGACATCAACGGGAAGTA 59.396 50.000 0.00 0.00 0.00 2.24
32 33 0.949105 GTGCGACATCAACGGGAAGT 60.949 55.000 0.00 0.00 0.00 3.01
33 34 1.635663 GGTGCGACATCAACGGGAAG 61.636 60.000 0.00 0.00 0.00 3.46
34 35 1.669760 GGTGCGACATCAACGGGAA 60.670 57.895 0.00 0.00 0.00 3.97
35 36 2.047655 GGTGCGACATCAACGGGA 60.048 61.111 0.00 0.00 0.00 5.14
36 37 1.705337 GATGGTGCGACATCAACGGG 61.705 60.000 13.66 0.00 45.11 5.28
37 38 1.715585 GATGGTGCGACATCAACGG 59.284 57.895 13.66 0.00 45.11 4.44
42 43 0.872021 GGACGAGATGGTGCGACATC 60.872 60.000 11.32 11.32 45.91 3.06
43 44 1.141881 GGACGAGATGGTGCGACAT 59.858 57.895 0.00 0.00 0.00 3.06
44 45 1.604147 ATGGACGAGATGGTGCGACA 61.604 55.000 0.00 0.00 0.00 4.35
45 46 1.141881 ATGGACGAGATGGTGCGAC 59.858 57.895 0.00 0.00 0.00 5.19
46 47 1.141665 CATGGACGAGATGGTGCGA 59.858 57.895 0.00 0.00 0.00 5.10
47 48 1.884464 CCATGGACGAGATGGTGCG 60.884 63.158 5.56 0.00 36.38 5.34
48 49 4.131376 CCATGGACGAGATGGTGC 57.869 61.111 5.56 0.00 36.38 5.01
51 52 1.656652 GACAACCATGGACGAGATGG 58.343 55.000 21.47 9.59 45.26 3.51
52 53 1.280982 CGACAACCATGGACGAGATG 58.719 55.000 21.47 9.48 34.21 2.90
53 54 0.895530 ACGACAACCATGGACGAGAT 59.104 50.000 21.47 0.00 35.53 2.75
54 55 0.038618 CACGACAACCATGGACGAGA 60.039 55.000 21.47 0.00 35.53 4.04
55 56 1.626654 GCACGACAACCATGGACGAG 61.627 60.000 21.47 16.38 35.53 4.18
56 57 1.666553 GCACGACAACCATGGACGA 60.667 57.895 21.47 0.00 35.53 4.20
57 58 2.677003 GGCACGACAACCATGGACG 61.677 63.158 21.47 19.07 36.83 4.79
58 59 2.332654 GGGCACGACAACCATGGAC 61.333 63.158 21.47 5.87 0.00 4.02
59 60 2.033448 GGGCACGACAACCATGGA 59.967 61.111 21.47 0.00 0.00 3.41
60 61 3.430862 CGGGCACGACAACCATGG 61.431 66.667 11.19 11.19 44.60 3.66
61 62 3.430862 CCGGGCACGACAACCATG 61.431 66.667 11.66 0.00 44.60 3.66
72 73 3.988525 GCATTGTTGTGCCGGGCA 61.989 61.111 19.77 19.77 39.18 5.36
84 85 0.524862 GCAGAGGTCACAAGGCATTG 59.475 55.000 10.01 10.01 42.46 2.82
85 86 0.610232 GGCAGAGGTCACAAGGCATT 60.610 55.000 0.00 0.00 0.00 3.56
86 87 1.001641 GGCAGAGGTCACAAGGCAT 60.002 57.895 0.00 0.00 0.00 4.40
87 88 0.835971 TAGGCAGAGGTCACAAGGCA 60.836 55.000 0.00 0.00 0.00 4.75
88 89 0.107945 CTAGGCAGAGGTCACAAGGC 60.108 60.000 0.00 0.00 0.00 4.35
89 90 1.561643 TCTAGGCAGAGGTCACAAGG 58.438 55.000 0.00 0.00 0.00 3.61
90 91 4.160439 TGTTATCTAGGCAGAGGTCACAAG 59.840 45.833 0.00 0.00 33.22 3.16
91 92 4.093743 TGTTATCTAGGCAGAGGTCACAA 58.906 43.478 0.00 0.00 33.22 3.33
92 93 3.708451 TGTTATCTAGGCAGAGGTCACA 58.292 45.455 0.00 0.00 33.22 3.58
93 94 4.946478 ATGTTATCTAGGCAGAGGTCAC 57.054 45.455 0.00 0.00 33.22 3.67
94 95 5.706447 ACTATGTTATCTAGGCAGAGGTCA 58.294 41.667 0.00 0.00 33.22 4.02
95 96 5.106475 CGACTATGTTATCTAGGCAGAGGTC 60.106 48.000 0.00 0.00 33.22 3.85
101 102 2.228103 CCGCGACTATGTTATCTAGGCA 59.772 50.000 8.23 0.00 0.00 4.75
105 106 2.486982 GGAGCCGCGACTATGTTATCTA 59.513 50.000 8.23 0.00 0.00 1.98
109 110 0.101759 GTGGAGCCGCGACTATGTTA 59.898 55.000 8.23 0.00 0.00 2.41
134 137 4.320456 AGGGATGCTATGCGCCGG 62.320 66.667 4.18 0.00 38.05 6.13
135 138 2.740055 GAGGGATGCTATGCGCCG 60.740 66.667 4.18 0.00 38.05 6.46
137 140 2.029666 ACGAGGGATGCTATGCGC 59.970 61.111 0.00 0.00 39.77 6.09
141 144 0.753262 GGTGACACGAGGGATGCTAT 59.247 55.000 0.00 0.00 0.00 2.97
195 198 1.069204 TCATGGAATCTAGCCAGCGTC 59.931 52.381 0.00 0.00 39.11 5.19
196 199 1.069823 CTCATGGAATCTAGCCAGCGT 59.930 52.381 0.00 0.00 39.11 5.07
197 200 1.342496 TCTCATGGAATCTAGCCAGCG 59.658 52.381 0.00 0.00 39.11 5.18
200 203 2.909006 GGGATCTCATGGAATCTAGCCA 59.091 50.000 0.00 0.00 40.24 4.75
201 204 2.238395 GGGGATCTCATGGAATCTAGCC 59.762 54.545 0.00 0.00 0.00 3.93
212 215 1.228063 GCGTGCATGGGGATCTCAT 60.228 57.895 8.27 0.00 0.00 2.90
231 234 2.687418 ATAGATGGCTGGCTTGGGCG 62.687 60.000 2.00 0.00 39.81 6.13
248 251 1.064758 GGTGGGTTGCATCTGACCATA 60.065 52.381 7.57 0.00 37.68 2.74
255 258 4.740822 GGGCGGTGGGTTGCATCT 62.741 66.667 0.00 0.00 0.00 2.90
266 269 4.619227 CGTGTTGTGAGGGGCGGT 62.619 66.667 0.00 0.00 0.00 5.68
309 312 1.449246 GCAGAGACAGCCGAAGCAT 60.449 57.895 0.00 0.00 43.56 3.79
312 315 1.621301 CGTTGCAGAGACAGCCGAAG 61.621 60.000 0.00 0.00 0.00 3.79
318 321 0.600557 AGACCTCGTTGCAGAGACAG 59.399 55.000 4.59 0.00 40.57 3.51
321 324 1.290324 GCAGACCTCGTTGCAGAGA 59.710 57.895 4.59 0.00 40.57 3.10
378 387 2.225017 CCCTACTCCTCTCATCCCTCTC 60.225 59.091 0.00 0.00 0.00 3.20
403 412 3.207778 CAAAACCCTAGTGTTTCCACGA 58.792 45.455 3.70 0.00 46.56 4.35
456 465 8.964476 AGGTTCAGATCATGATACGTTAATTT 57.036 30.769 8.54 0.00 37.89 1.82
457 466 7.657761 GGAGGTTCAGATCATGATACGTTAATT 59.342 37.037 8.54 0.00 37.89 1.40
458 467 7.015682 AGGAGGTTCAGATCATGATACGTTAAT 59.984 37.037 8.54 0.00 37.89 1.40
459 468 6.323996 AGGAGGTTCAGATCATGATACGTTAA 59.676 38.462 8.54 0.00 37.89 2.01
466 475 3.070734 CGGAAGGAGGTTCAGATCATGAT 59.929 47.826 8.25 8.25 37.89 2.45
468 477 2.169352 ACGGAAGGAGGTTCAGATCATG 59.831 50.000 0.00 0.00 36.82 3.07
470 479 1.550524 CACGGAAGGAGGTTCAGATCA 59.449 52.381 0.00 0.00 36.82 2.92
474 592 0.685097 TTCCACGGAAGGAGGTTCAG 59.315 55.000 0.00 0.00 39.25 3.02
504 622 5.712217 TTTTTGGCTCTAATCGTGATACG 57.288 39.130 0.00 0.00 44.19 3.06
538 681 3.309682 CGTGCAGATCATGATACGGTTTT 59.690 43.478 17.23 0.00 37.37 2.43
542 685 2.054363 GACGTGCAGATCATGATACGG 58.946 52.381 24.85 14.04 42.07 4.02
568 711 8.375506 TCACTAAACTATTGGAGTGAAAGTGAT 58.624 33.333 1.23 0.00 43.97 3.06
576 719 8.492673 TTTAGCATCACTAAACTATTGGAGTG 57.507 34.615 0.00 0.00 44.21 3.51
601 744 3.525537 CGCAAAGTGATCTACAGACCAT 58.474 45.455 0.00 0.00 0.00 3.55
604 747 1.321743 CGCGCAAAGTGATCTACAGAC 59.678 52.381 8.75 0.00 0.00 3.51
612 755 1.225855 TTTCTGTCGCGCAAAGTGAT 58.774 45.000 8.75 0.00 41.93 3.06
632 775 4.849383 GTGTTTCGCGTGCAGTATATTTTT 59.151 37.500 5.77 0.00 0.00 1.94
663 806 1.341383 ACCATTTTCTAGCTGCCCCTG 60.341 52.381 0.00 0.00 0.00 4.45
710 854 1.794437 CGAGTAGCGCTACAGACAACC 60.794 57.143 40.32 21.74 38.48 3.77
730 874 3.672295 CTTCCCACGAGCTCCAGCC 62.672 68.421 8.47 0.00 43.38 4.85
849 995 3.640967 AGGGATAAGAGCTGAGTCACATC 59.359 47.826 0.00 0.00 0.00 3.06
850 996 3.640967 GAGGGATAAGAGCTGAGTCACAT 59.359 47.826 0.00 0.00 0.00 3.21
988 1134 1.880027 GGACACCATGGTTGACTTGAC 59.120 52.381 16.84 3.05 0.00 3.18
1074 1222 2.599281 TCCCCGACTTCGTGCTCA 60.599 61.111 0.00 0.00 37.74 4.26
1708 1883 5.057149 AGAATTTGCTACGTCTTTGAGTGT 58.943 37.500 0.00 0.00 0.00 3.55
1710 1885 6.619801 AAAGAATTTGCTACGTCTTTGAGT 57.380 33.333 0.00 0.00 38.55 3.41
1711 1886 7.312888 CAAAAGAATTTGCTACGTCTTTGAG 57.687 36.000 0.00 0.00 39.02 3.02
1730 1918 9.691362 TTATTAGCTTGGCTTTTTAGACAAAAG 57.309 29.630 0.00 3.18 40.44 2.27
1744 1932 1.746470 ACCCGTGTTATTAGCTTGGC 58.254 50.000 0.00 0.00 0.00 4.52
1867 2063 5.999205 ATGGAAAGCAATCATTGGTGTAA 57.001 34.783 2.03 0.00 41.89 2.41
1868 2064 5.479724 TGAATGGAAAGCAATCATTGGTGTA 59.520 36.000 2.03 0.00 41.89 2.90
1869 2065 4.283978 TGAATGGAAAGCAATCATTGGTGT 59.716 37.500 2.03 0.00 41.89 4.16
1927 2125 7.275888 TCTTGTTTTGTCATTGCAACTCTAT 57.724 32.000 0.00 0.00 0.00 1.98
1983 2181 1.216977 CGGCCGATGTGTACCTCAA 59.783 57.895 24.07 0.00 0.00 3.02
2111 2309 4.508128 TCGAACGGGGATGCGAGC 62.508 66.667 0.00 0.00 0.00 5.03
2123 2321 2.095252 GGCGGTGAAGAGCTCGAAC 61.095 63.158 8.37 7.95 0.00 3.95
2242 2443 1.228769 AGGACCGGTGAGCTGTACA 60.229 57.895 14.63 0.00 0.00 2.90
2725 2927 1.741770 GGCGCACCTGAGAACGATT 60.742 57.895 10.83 0.00 0.00 3.34
2785 2987 5.661312 GGATTAGGCCAGGGAAAGTTATTTT 59.339 40.000 5.01 0.00 0.00 1.82
2786 2988 5.208890 GGATTAGGCCAGGGAAAGTTATTT 58.791 41.667 5.01 0.00 0.00 1.40
2793 2995 0.544697 GTCGGATTAGGCCAGGGAAA 59.455 55.000 5.01 0.00 0.00 3.13
2796 2998 1.146263 GTGTCGGATTAGGCCAGGG 59.854 63.158 5.01 0.00 0.00 4.45
2817 3019 3.243367 TGAACATCCCTGCAAAAGTTTCG 60.243 43.478 0.00 0.00 0.00 3.46
2843 3046 2.846039 TGTCGTTCCTCTTCGCTATC 57.154 50.000 0.00 0.00 0.00 2.08
2858 3061 2.180017 GCTGCCATTGCCTTGTCG 59.820 61.111 0.00 0.00 36.33 4.35
2894 3097 0.527169 CGATGCTGCTCGTGATCACT 60.527 55.000 22.95 1.85 34.00 3.41
2918 3121 1.016130 AGCTCATGACGTTGGAAGCG 61.016 55.000 0.00 0.00 0.00 4.68
2965 3168 4.421952 GCTAACTAGCTCCGGCAC 57.578 61.111 0.00 0.00 45.62 5.01
3073 3288 4.765273 ACATACACAATGCCTCGTATCAA 58.235 39.130 0.00 0.00 39.39 2.57
3168 3389 6.808704 GCTCTTTTTCTTCGCCTGATATTTTT 59.191 34.615 0.00 0.00 0.00 1.94
3169 3390 6.325596 GCTCTTTTTCTTCGCCTGATATTTT 58.674 36.000 0.00 0.00 0.00 1.82
3200 3421 1.873591 ACACAGCAAATTCGTCTGACC 59.126 47.619 1.55 0.00 0.00 4.02
3220 3441 6.097129 TGGGTGTCAGACATTAACATCGTATA 59.903 38.462 6.51 0.00 0.00 1.47
3231 3452 3.417069 TCGATTTGGGTGTCAGACATT 57.583 42.857 6.51 0.00 0.00 2.71
3243 3465 2.218603 CTAATCCCCCGTTCGATTTGG 58.781 52.381 0.00 0.00 31.33 3.28
3298 6553 5.892160 AGAAGCTGTATGTACACTAACGA 57.108 39.130 0.00 0.00 31.93 3.85
3299 6554 8.630278 AATTAGAAGCTGTATGTACACTAACG 57.370 34.615 0.00 0.00 29.61 3.18
3308 6563 7.806180 AGTGGGATTAATTAGAAGCTGTATGT 58.194 34.615 0.00 0.00 0.00 2.29
3309 6564 8.153550 AGAGTGGGATTAATTAGAAGCTGTATG 58.846 37.037 0.00 0.00 0.00 2.39
3366 6621 6.518493 TGTGTTTAGAAGATTGTACCGAAGT 58.482 36.000 0.00 0.00 0.00 3.01
3378 6633 7.279981 CGGGTGATTATTGATGTGTTTAGAAGA 59.720 37.037 0.00 0.00 0.00 2.87
3379 6634 7.409697 CGGGTGATTATTGATGTGTTTAGAAG 58.590 38.462 0.00 0.00 0.00 2.85
3381 6636 5.295787 GCGGGTGATTATTGATGTGTTTAGA 59.704 40.000 0.00 0.00 0.00 2.10
3400 8549 2.973694 TCTAATTTTAGAGCGCGGGT 57.026 45.000 8.83 0.00 34.99 5.28
3424 8573 0.716108 GTCTCGAGTTTGATGCCACG 59.284 55.000 13.13 0.00 0.00 4.94
3449 8598 0.955428 ATCAATGCGCTCACAACCGT 60.955 50.000 9.73 0.00 0.00 4.83
3463 8612 6.096846 GCTGGTTGGTTCTAATGGTTATCAAT 59.903 38.462 0.00 0.00 0.00 2.57
3490 8639 1.860950 GCTGCGTATGTACATCACCAG 59.139 52.381 12.68 16.29 0.00 4.00
3507 8659 5.062308 GTCTAGTTGATAAGAAACCGTGCTG 59.938 44.000 0.00 0.00 0.00 4.41
3511 8663 5.479375 TCCAGTCTAGTTGATAAGAAACCGT 59.521 40.000 0.00 0.00 0.00 4.83
3529 8681 4.634883 TGATCTGTTAGAGTACGTCCAGTC 59.365 45.833 0.00 0.00 0.00 3.51
3531 8683 5.562506 TTGATCTGTTAGAGTACGTCCAG 57.437 43.478 0.00 0.00 0.00 3.86
3536 8688 4.563184 GCTGGTTTGATCTGTTAGAGTACG 59.437 45.833 0.00 0.00 0.00 3.67
3542 8694 4.067896 ACAGTGCTGGTTTGATCTGTTAG 58.932 43.478 4.11 0.00 33.26 2.34
3545 8697 2.645838 ACAGTGCTGGTTTGATCTGT 57.354 45.000 4.11 0.00 34.19 3.41
3549 8701 2.884639 GGTTGTACAGTGCTGGTTTGAT 59.115 45.455 4.11 0.00 34.19 2.57
3603 8755 6.582295 ACTGAAAAACGCATTAGCTACAATTG 59.418 34.615 3.24 3.24 39.10 2.32
3604 8756 6.677913 ACTGAAAAACGCATTAGCTACAATT 58.322 32.000 0.00 0.00 39.10 2.32
3618 8770 4.543658 CGTGCTTTCGAAAACTGAAAAACG 60.544 41.667 12.41 8.37 38.23 3.60
3632 8784 5.368552 TTTGAAAAACATTCGTGCTTTCG 57.631 34.783 0.00 0.00 33.47 3.46
3679 8831 7.609760 AAAATTGTGTTCCCAAAAGAAGTTC 57.390 32.000 0.00 0.00 0.00 3.01
3911 9066 5.190342 GCTCGCAAATTTGAAAAAGTGTTC 58.810 37.500 22.31 0.00 0.00 3.18
3919 9074 7.649370 TCAAATAATGCTCGCAAATTTGAAA 57.351 28.000 26.35 15.21 42.53 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.