Multiple sequence alignment - TraesCS3D01G339600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G339600 chr3D 100.000 3463 0 0 608 4070 452619953 452616491 0.000000e+00 6396.0
1 TraesCS3D01G339600 chr3D 100.000 120 0 0 1 120 452620560 452620441 5.290000e-54 222.0
2 TraesCS3D01G339600 chr3B 93.223 2848 105 37 608 3437 594745784 594743007 0.000000e+00 4109.0
3 TraesCS3D01G339600 chr3B 93.715 1416 57 9 1254 2657 680235317 680233922 0.000000e+00 2093.0
4 TraesCS3D01G339600 chr3B 88.960 625 32 15 3450 4051 594739885 594739275 0.000000e+00 737.0
5 TraesCS3D01G339600 chr3B 95.000 120 5 1 1 119 594745952 594745833 1.930000e-43 187.0
6 TraesCS3D01G339600 chr3A 92.942 2706 101 32 608 3269 595061963 595059304 0.000000e+00 3856.0
7 TraesCS3D01G339600 chr3A 90.705 624 28 13 3453 4051 595059206 595058588 0.000000e+00 804.0
8 TraesCS3D01G339600 chr3A 90.164 122 7 4 1 120 595062112 595061994 1.960000e-33 154.0
9 TraesCS3D01G339600 chr3A 93.750 64 4 0 3334 3397 595059286 595059223 3.350000e-16 97.1
10 TraesCS3D01G339600 chr5B 93.644 1416 58 9 1254 2657 411026787 411025392 0.000000e+00 2087.0
11 TraesCS3D01G339600 chr1B 93.503 1416 60 9 1254 2657 353273958 353272563 0.000000e+00 2076.0
12 TraesCS3D01G339600 chr1B 82.359 1916 311 21 1092 2995 532693355 532695255 0.000000e+00 1640.0
13 TraesCS3D01G339600 chr7A 93.542 1409 61 9 1254 2652 608482219 608483607 0.000000e+00 2071.0
14 TraesCS3D01G339600 chr6B 93.471 1409 62 7 1254 2652 424069782 424071170 0.000000e+00 2065.0
15 TraesCS3D01G339600 chr1D 82.706 1914 308 18 1092 2995 397285115 397287015 0.000000e+00 1679.0
16 TraesCS3D01G339600 chr1A 82.316 1917 313 22 1092 2995 494799607 494801510 0.000000e+00 1639.0
17 TraesCS3D01G339600 chr4B 92.507 734 31 10 1934 2657 396524267 396523548 0.000000e+00 1029.0
18 TraesCS3D01G339600 chrUn 93.944 677 27 7 1976 2652 363668711 363669373 0.000000e+00 1011.0
19 TraesCS3D01G339600 chr7D 99.773 440 1 0 2334 2773 236582801 236582362 0.000000e+00 808.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G339600 chr3D 452616491 452620560 4069 True 3309.000000 6396 100.000000 1 4070 2 chr3D.!!$R1 4069
1 TraesCS3D01G339600 chr3B 680233922 680235317 1395 True 2093.000000 2093 93.715000 1254 2657 1 chr3B.!!$R1 1403
2 TraesCS3D01G339600 chr3B 594739275 594745952 6677 True 1677.666667 4109 92.394333 1 4051 3 chr3B.!!$R2 4050
3 TraesCS3D01G339600 chr3A 595058588 595062112 3524 True 1227.775000 3856 91.890250 1 4051 4 chr3A.!!$R1 4050
4 TraesCS3D01G339600 chr5B 411025392 411026787 1395 True 2087.000000 2087 93.644000 1254 2657 1 chr5B.!!$R1 1403
5 TraesCS3D01G339600 chr1B 353272563 353273958 1395 True 2076.000000 2076 93.503000 1254 2657 1 chr1B.!!$R1 1403
6 TraesCS3D01G339600 chr1B 532693355 532695255 1900 False 1640.000000 1640 82.359000 1092 2995 1 chr1B.!!$F1 1903
7 TraesCS3D01G339600 chr7A 608482219 608483607 1388 False 2071.000000 2071 93.542000 1254 2652 1 chr7A.!!$F1 1398
8 TraesCS3D01G339600 chr6B 424069782 424071170 1388 False 2065.000000 2065 93.471000 1254 2652 1 chr6B.!!$F1 1398
9 TraesCS3D01G339600 chr1D 397285115 397287015 1900 False 1679.000000 1679 82.706000 1092 2995 1 chr1D.!!$F1 1903
10 TraesCS3D01G339600 chr1A 494799607 494801510 1903 False 1639.000000 1639 82.316000 1092 2995 1 chr1A.!!$F1 1903
11 TraesCS3D01G339600 chr4B 396523548 396524267 719 True 1029.000000 1029 92.507000 1934 2657 1 chr4B.!!$R1 723
12 TraesCS3D01G339600 chrUn 363668711 363669373 662 False 1011.000000 1011 93.944000 1976 2652 1 chrUn.!!$F1 676

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
829 845 1.152546 AAAGTCCCACCCAACCAGC 60.153 57.895 0.0 0.0 0.0 4.85 F
830 846 1.943730 AAAGTCCCACCCAACCAGCA 61.944 55.000 0.0 0.0 0.0 4.41 F
2184 2231 0.603569 TGAAGAAGCTCTCCGTGTCC 59.396 55.000 0.0 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2022 2069 3.262915 ACTTGGAGATGAGGTTCTTGAGG 59.737 47.826 0.0 0.0 0.00 3.86 R
3066 3113 6.926272 AGAAGAGCGTGATTAATTCATCCTAC 59.074 38.462 0.0 0.0 36.54 3.18 R
3158 3205 0.104120 TCAACACCACTCACTCACCG 59.896 55.000 0.0 0.0 0.00 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
114 115 2.039298 TGGACTGACCCAACCCCA 60.039 61.111 0.00 0.00 38.00 4.96
115 116 1.465188 TGGACTGACCCAACCCCAT 60.465 57.895 0.00 0.00 38.00 4.00
116 117 1.303282 GGACTGACCCAACCCCATC 59.697 63.158 0.00 0.00 0.00 3.51
644 645 2.171027 TCTTCCCGGGCGTAATAACAAT 59.829 45.455 18.49 0.00 0.00 2.71
649 650 3.135225 CCGGGCGTAATAACAATGATCA 58.865 45.455 0.00 0.00 0.00 2.92
653 654 5.454232 CGGGCGTAATAACAATGATCAAAAC 59.546 40.000 0.00 0.00 0.00 2.43
655 656 5.454232 GGCGTAATAACAATGATCAAAACCG 59.546 40.000 0.00 0.00 0.00 4.44
656 657 6.025280 GCGTAATAACAATGATCAAAACCGT 58.975 36.000 0.00 0.00 0.00 4.83
684 689 4.328983 ACATCATCATCACCGTCGTTAAAC 59.671 41.667 0.00 0.00 0.00 2.01
722 727 9.660180 TGCATACATACTAACAATCACAACTAA 57.340 29.630 0.00 0.00 0.00 2.24
758 763 4.264380 CGTGATACGACATTCACAAATCGA 59.736 41.667 0.00 0.00 46.05 3.59
759 764 5.051708 CGTGATACGACATTCACAAATCGAT 60.052 40.000 0.00 0.00 46.05 3.59
760 765 6.141685 CGTGATACGACATTCACAAATCGATA 59.858 38.462 0.00 0.00 46.05 2.92
761 766 7.305763 CGTGATACGACATTCACAAATCGATAA 60.306 37.037 0.00 0.00 46.05 1.75
829 845 1.152546 AAAGTCCCACCCAACCAGC 60.153 57.895 0.00 0.00 0.00 4.85
830 846 1.943730 AAAGTCCCACCCAACCAGCA 61.944 55.000 0.00 0.00 0.00 4.41
831 847 2.282462 GTCCCACCCAACCAGCAG 60.282 66.667 0.00 0.00 0.00 4.24
832 848 4.284550 TCCCACCCAACCAGCAGC 62.285 66.667 0.00 0.00 0.00 5.25
834 850 4.601794 CCACCCAACCAGCAGCCA 62.602 66.667 0.00 0.00 0.00 4.75
835 851 3.297620 CACCCAACCAGCAGCCAC 61.298 66.667 0.00 0.00 0.00 5.01
836 852 4.954970 ACCCAACCAGCAGCCACG 62.955 66.667 0.00 0.00 0.00 4.94
867 883 4.380531 CCACCAGCTTATTACATCATCGT 58.619 43.478 0.00 0.00 0.00 3.73
911 933 2.270047 CTCCGTCGCCCGTTTATAAAA 58.730 47.619 0.00 0.00 33.66 1.52
2022 2069 2.564721 GCTGGTGCCCAACAAGTCC 61.565 63.158 0.00 0.00 31.64 3.85
2184 2231 0.603569 TGAAGAAGCTCTCCGTGTCC 59.396 55.000 0.00 0.00 0.00 4.02
3129 3176 1.148157 CGATTAGGCAGGCTGTGTCG 61.148 60.000 17.16 13.99 35.13 4.35
3157 3204 5.586339 TCTTTGATGCGAGAGAGATAACAG 58.414 41.667 0.00 0.00 0.00 3.16
3158 3205 3.361794 TGATGCGAGAGAGATAACAGC 57.638 47.619 0.00 0.00 0.00 4.40
3159 3206 2.287248 TGATGCGAGAGAGATAACAGCG 60.287 50.000 0.00 0.00 0.00 5.18
3202 3254 3.090037 ACAACTGTGTATACGGAGCTCT 58.910 45.455 14.64 0.00 35.72 4.09
3220 3279 2.203294 GGCCGGCCCGATGTAATT 60.203 61.111 36.64 0.00 0.00 1.40
3223 3282 1.450211 CCGGCCCGATGTAATTCCT 59.550 57.895 3.71 0.00 0.00 3.36
3239 3300 5.447624 AATTCCTTCCGTTTGTACCAAAG 57.552 39.130 0.00 0.00 0.00 2.77
3245 3306 6.376581 TCCTTCCGTTTGTACCAAAGTTTTAA 59.623 34.615 0.00 0.00 0.00 1.52
3269 3337 7.596749 ACCTTTCTTGACACGAAATATACAG 57.403 36.000 7.49 0.00 30.75 2.74
3272 3340 8.383619 CCTTTCTTGACACGAAATATACAGAAG 58.616 37.037 7.49 0.00 30.75 2.85
3311 3389 0.796491 CGTGTTGTGTTGTGGTGTGC 60.796 55.000 0.00 0.00 0.00 4.57
3382 3460 4.823442 TCTGAGCTACCGGTATTCGATTTA 59.177 41.667 16.25 0.00 42.43 1.40
3406 3484 2.209273 GGGAAAGCAACGCATTTGTTT 58.791 42.857 0.00 0.00 40.11 2.83
3410 3488 2.138596 AGCAACGCATTTGTTTGGAG 57.861 45.000 0.00 0.00 37.54 3.86
3411 3489 1.680735 AGCAACGCATTTGTTTGGAGA 59.319 42.857 0.00 0.00 37.54 3.71
3412 3490 1.786579 GCAACGCATTTGTTTGGAGAC 59.213 47.619 0.00 0.00 37.54 3.36
3413 3491 2.043411 CAACGCATTTGTTTGGAGACG 58.957 47.619 0.00 0.00 0.00 4.18
3414 3492 0.591170 ACGCATTTGTTTGGAGACGG 59.409 50.000 0.00 0.00 0.00 4.79
3415 3493 0.871722 CGCATTTGTTTGGAGACGGA 59.128 50.000 0.00 0.00 0.00 4.69
3418 3496 1.200020 CATTTGTTTGGAGACGGAGGC 59.800 52.381 0.00 0.00 0.00 4.70
3420 3498 2.046217 GTTTGGAGACGGAGGCCC 60.046 66.667 0.00 0.00 0.00 5.80
3430 3508 4.593864 GGAGGCCCGATCTGCGTC 62.594 72.222 14.73 14.73 41.57 5.19
3431 3509 4.593864 GAGGCCCGATCTGCGTCC 62.594 72.222 0.00 0.00 37.59 4.79
3449 3527 1.169661 CCTCTCCTCTCCGTGATCCG 61.170 65.000 0.00 0.00 0.00 4.18
3479 6671 0.962356 CGGAAGCAAGCAACTGGGAT 60.962 55.000 0.00 0.00 0.00 3.85
3561 6758 4.421515 CCTGGCTGGCTGGACCTG 62.422 72.222 20.36 0.00 40.22 4.00
3651 6852 1.689959 GTCCAGGTTGTGTACGTACG 58.310 55.000 20.18 15.01 0.00 3.67
3652 6853 1.001378 GTCCAGGTTGTGTACGTACGT 60.001 52.381 25.98 25.98 0.00 3.57
3653 6854 1.001487 TCCAGGTTGTGTACGTACGTG 60.001 52.381 30.25 10.27 0.00 4.49
3900 7119 0.455815 GTTGAAATGGATGGCCGTCC 59.544 55.000 33.84 33.84 38.81 4.79
4046 7274 1.003580 TGGGCACAGACTGGAAAGATC 59.996 52.381 7.51 0.00 0.00 2.75
4051 7279 3.364366 GCACAGACTGGAAAGATCGTTTG 60.364 47.826 7.51 0.00 0.00 2.93
4052 7280 3.187227 CACAGACTGGAAAGATCGTTTGG 59.813 47.826 7.51 0.00 0.00 3.28
4053 7281 2.744202 CAGACTGGAAAGATCGTTTGGG 59.256 50.000 0.00 0.00 0.00 4.12
4054 7282 2.637872 AGACTGGAAAGATCGTTTGGGA 59.362 45.455 0.00 0.00 0.00 4.37
4055 7283 3.072476 AGACTGGAAAGATCGTTTGGGAA 59.928 43.478 0.00 0.00 0.00 3.97
4056 7284 4.010349 GACTGGAAAGATCGTTTGGGAAT 58.990 43.478 0.00 0.00 0.00 3.01
4057 7285 4.407365 ACTGGAAAGATCGTTTGGGAATT 58.593 39.130 0.00 0.00 0.00 2.17
4058 7286 4.832823 ACTGGAAAGATCGTTTGGGAATTT 59.167 37.500 0.00 0.00 0.00 1.82
4059 7287 5.132897 TGGAAAGATCGTTTGGGAATTTG 57.867 39.130 0.00 0.00 0.00 2.32
4060 7288 4.830046 TGGAAAGATCGTTTGGGAATTTGA 59.170 37.500 0.00 0.00 0.00 2.69
4061 7289 5.303078 TGGAAAGATCGTTTGGGAATTTGAA 59.697 36.000 0.00 0.00 0.00 2.69
4062 7290 5.863935 GGAAAGATCGTTTGGGAATTTGAAG 59.136 40.000 0.00 0.00 0.00 3.02
4063 7291 6.405278 AAAGATCGTTTGGGAATTTGAAGT 57.595 33.333 0.00 0.00 0.00 3.01
4064 7292 5.376854 AGATCGTTTGGGAATTTGAAGTG 57.623 39.130 0.00 0.00 0.00 3.16
4065 7293 5.070001 AGATCGTTTGGGAATTTGAAGTGA 58.930 37.500 0.00 0.00 0.00 3.41
4066 7294 5.534654 AGATCGTTTGGGAATTTGAAGTGAA 59.465 36.000 0.00 0.00 0.00 3.18
4067 7295 5.181690 TCGTTTGGGAATTTGAAGTGAAG 57.818 39.130 0.00 0.00 0.00 3.02
4068 7296 4.037446 TCGTTTGGGAATTTGAAGTGAAGG 59.963 41.667 0.00 0.00 0.00 3.46
4069 7297 4.037446 CGTTTGGGAATTTGAAGTGAAGGA 59.963 41.667 0.00 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 4.266070 ATCGGATCGTGTCGCGGG 62.266 66.667 6.13 0.00 41.72 6.13
635 636 8.270080 TGCTACGGTTTTGATCATTGTTATTA 57.730 30.769 0.00 0.00 0.00 0.98
644 645 4.068599 TGATGTTGCTACGGTTTTGATCA 58.931 39.130 0.00 0.00 0.00 2.92
649 650 4.699735 TGATGATGATGTTGCTACGGTTTT 59.300 37.500 0.00 0.00 0.00 2.43
653 654 2.545526 GGTGATGATGATGTTGCTACGG 59.454 50.000 0.00 0.00 0.00 4.02
655 656 3.198068 ACGGTGATGATGATGTTGCTAC 58.802 45.455 0.00 0.00 0.00 3.58
656 657 3.457234 GACGGTGATGATGATGTTGCTA 58.543 45.455 0.00 0.00 0.00 3.49
722 727 8.882415 ATGTCGTATCACGGAAATTACTTATT 57.118 30.769 0.00 0.00 42.81 1.40
723 728 8.882415 AATGTCGTATCACGGAAATTACTTAT 57.118 30.769 0.00 0.00 42.81 1.73
727 732 6.035220 TGTGAATGTCGTATCACGGAAATTAC 59.965 38.462 0.00 0.00 46.99 1.89
758 763 8.832521 TCGCGGTGTTGATCTTATTTTATTTAT 58.167 29.630 6.13 0.00 0.00 1.40
759 764 8.117988 GTCGCGGTGTTGATCTTATTTTATTTA 58.882 33.333 6.13 0.00 0.00 1.40
760 765 6.964934 GTCGCGGTGTTGATCTTATTTTATTT 59.035 34.615 6.13 0.00 0.00 1.40
761 766 6.092944 TGTCGCGGTGTTGATCTTATTTTATT 59.907 34.615 6.13 0.00 0.00 1.40
838 854 2.837031 AATAAGCTGGTGGGCCGTGG 62.837 60.000 0.00 0.00 37.67 4.94
839 855 0.107410 TAATAAGCTGGTGGGCCGTG 60.107 55.000 0.00 0.00 37.67 4.94
840 856 0.107361 GTAATAAGCTGGTGGGCCGT 60.107 55.000 0.00 0.00 37.67 5.68
867 883 8.918202 AGTGGAGTGAGATTTTTGTTATTACA 57.082 30.769 0.00 0.00 0.00 2.41
1431 1465 4.154347 GGCAGGAGGTCGAGCAGG 62.154 72.222 18.15 4.03 0.00 4.85
2022 2069 3.262915 ACTTGGAGATGAGGTTCTTGAGG 59.737 47.826 0.00 0.00 0.00 3.86
3066 3113 6.926272 AGAAGAGCGTGATTAATTCATCCTAC 59.074 38.462 0.00 0.00 36.54 3.18
3129 3176 2.196749 TCTCTCGCATCAAAGAATCGC 58.803 47.619 0.00 0.00 0.00 4.58
3157 3204 1.227556 AACACCACTCACTCACCGC 60.228 57.895 0.00 0.00 0.00 5.68
3158 3205 0.104120 TCAACACCACTCACTCACCG 59.896 55.000 0.00 0.00 0.00 4.94
3159 3206 2.224281 TGATCAACACCACTCACTCACC 60.224 50.000 0.00 0.00 0.00 4.02
3202 3254 2.951475 GAATTACATCGGGCCGGCCA 62.951 60.000 44.46 28.13 37.98 5.36
3210 3262 3.687698 ACAAACGGAAGGAATTACATCGG 59.312 43.478 0.00 0.00 0.00 4.18
3213 3265 5.562635 TGGTACAAACGGAAGGAATTACAT 58.437 37.500 0.00 0.00 31.92 2.29
3214 3266 4.970711 TGGTACAAACGGAAGGAATTACA 58.029 39.130 0.00 0.00 31.92 2.41
3239 3300 7.980742 ATTTCGTGTCAAGAAAGGTTAAAAC 57.019 32.000 17.10 0.00 40.39 2.43
3245 3306 7.383687 TCTGTATATTTCGTGTCAAGAAAGGT 58.616 34.615 17.10 11.35 40.39 3.50
3269 3337 5.444745 CGAGCTAACCGATTTCACTTTCTTC 60.445 44.000 0.00 0.00 0.00 2.87
3272 3340 3.678548 ACGAGCTAACCGATTTCACTTTC 59.321 43.478 0.00 0.00 0.00 2.62
3282 3355 0.386476 ACACAACACGAGCTAACCGA 59.614 50.000 0.00 0.00 0.00 4.69
3288 3361 0.392461 ACCACAACACAACACGAGCT 60.392 50.000 0.00 0.00 0.00 4.09
3328 3406 1.402107 TAAGGCGGACCGGTTATCCC 61.402 60.000 17.22 3.79 42.76 3.85
3382 3460 3.860930 ATGCGTTGCTTTCCCCCGT 62.861 57.895 0.00 0.00 0.00 5.28
3413 3491 4.593864 GACGCAGATCGGGCCTCC 62.594 72.222 0.84 0.00 43.86 4.30
3414 3492 4.593864 GGACGCAGATCGGGCCTC 62.594 72.222 0.84 0.00 43.86 4.70
3418 3496 2.725008 GAGAGGACGCAGATCGGG 59.275 66.667 0.00 0.00 43.86 5.14
3420 3498 0.817634 AGAGGAGAGGACGCAGATCG 60.818 60.000 0.00 0.00 45.38 3.69
3421 3499 0.951558 GAGAGGAGAGGACGCAGATC 59.048 60.000 0.00 0.00 0.00 2.75
3422 3500 0.467290 GGAGAGGAGAGGACGCAGAT 60.467 60.000 0.00 0.00 0.00 2.90
3423 3501 1.077357 GGAGAGGAGAGGACGCAGA 60.077 63.158 0.00 0.00 0.00 4.26
3424 3502 2.477176 CGGAGAGGAGAGGACGCAG 61.477 68.421 0.00 0.00 0.00 5.18
3425 3503 2.438614 CGGAGAGGAGAGGACGCA 60.439 66.667 0.00 0.00 0.00 5.24
3426 3504 2.438795 ACGGAGAGGAGAGGACGC 60.439 66.667 0.00 0.00 0.00 5.19
3427 3505 0.464735 ATCACGGAGAGGAGAGGACG 60.465 60.000 0.00 0.00 0.00 4.79
3428 3506 1.314730 GATCACGGAGAGGAGAGGAC 58.685 60.000 0.00 0.00 0.00 3.85
3429 3507 0.183971 GGATCACGGAGAGGAGAGGA 59.816 60.000 0.00 0.00 0.00 3.71
3430 3508 1.169661 CGGATCACGGAGAGGAGAGG 61.170 65.000 0.00 0.00 39.42 3.69
3431 3509 0.179043 TCGGATCACGGAGAGGAGAG 60.179 60.000 0.00 0.00 44.45 3.20
3449 3527 5.291293 TGCTTGCTTCCGTTAAATAACTC 57.709 39.130 2.18 0.00 34.12 3.01
3479 6671 1.534336 AACCATGAAGCGCCAATGCA 61.534 50.000 2.29 0.00 37.32 3.96
3551 6748 1.908340 ATCACTCTGCAGGTCCAGCC 61.908 60.000 15.13 0.00 32.87 4.85
3553 6750 1.735386 CAATCACTCTGCAGGTCCAG 58.265 55.000 15.13 6.22 0.00 3.86
3554 6751 0.321919 GCAATCACTCTGCAGGTCCA 60.322 55.000 15.13 0.32 39.69 4.02
3557 6754 0.390866 CTCGCAATCACTCTGCAGGT 60.391 55.000 15.13 7.99 39.91 4.00
3559 6756 1.714414 GCTCGCAATCACTCTGCAG 59.286 57.895 7.63 7.63 39.91 4.41
3560 6757 2.096442 CGCTCGCAATCACTCTGCA 61.096 57.895 0.00 0.00 39.91 4.41
3561 6758 1.150567 ATCGCTCGCAATCACTCTGC 61.151 55.000 0.00 0.00 36.41 4.26
3562 6759 0.575859 CATCGCTCGCAATCACTCTG 59.424 55.000 0.00 0.00 0.00 3.35
3603 6804 2.821810 GAGGGCAGAGCGAAAGGC 60.822 66.667 0.00 0.00 44.05 4.35
3604 6805 0.813210 GATGAGGGCAGAGCGAAAGG 60.813 60.000 0.00 0.00 0.00 3.11
3605 6806 0.177604 AGATGAGGGCAGAGCGAAAG 59.822 55.000 0.00 0.00 0.00 2.62
3651 6852 3.044305 GTGGAGTGGAGCACGCAC 61.044 66.667 0.00 0.00 39.64 5.34
3652 6853 4.662961 CGTGGAGTGGAGCACGCA 62.663 66.667 0.00 0.00 39.64 5.24
3653 6854 4.664677 ACGTGGAGTGGAGCACGC 62.665 66.667 0.00 0.00 43.84 5.34
3887 7106 2.911143 GACAGGACGGCCATCCAT 59.089 61.111 22.17 7.61 41.73 3.41
3900 7119 2.207229 TCCACAGGTGACCCGACAG 61.207 63.158 0.00 0.00 35.12 3.51
4009 7237 1.408822 CCCAGATAGTCCCACTTTGGC 60.409 57.143 0.00 0.00 35.79 4.52
4046 7274 4.037446 TCCTTCACTTCAAATTCCCAAACG 59.963 41.667 0.00 0.00 0.00 3.60


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.