Multiple sequence alignment - TraesCS3D01G339500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G339500 chr3D 100.000 2384 0 0 1 2384 452484808 452487191 0.000000e+00 4403.0
1 TraesCS3D01G339500 chr3D 94.167 120 7 0 2265 2384 24569710 24569591 1.460000e-42 183.0
2 TraesCS3D01G339500 chr3D 98.214 56 1 0 1757 1812 150339723 150339778 5.420000e-17 99.0
3 TraesCS3D01G339500 chr3D 96.610 59 2 0 1757 1815 168719116 168719058 5.420000e-17 99.0
4 TraesCS3D01G339500 chr3B 92.239 1804 70 27 5 1758 594441008 594442791 0.000000e+00 2492.0
5 TraesCS3D01G339500 chr3B 97.561 123 3 0 2078 2200 594443226 594443348 6.680000e-51 211.0
6 TraesCS3D01G339500 chr3B 90.426 94 6 3 1956 2047 594443062 594443154 1.160000e-23 121.0
7 TraesCS3D01G339500 chr3B 95.652 69 3 0 2198 2266 594443458 594443526 6.970000e-21 111.0
8 TraesCS3D01G339500 chr3B 85.577 104 9 6 1945 2047 3634388 3634486 1.170000e-18 104.0
9 TraesCS3D01G339500 chr3B 85.577 104 9 6 1945 2047 5202161 5202063 1.170000e-18 104.0
10 TraesCS3D01G339500 chr3A 90.829 1712 100 22 10 1683 594797649 594799341 0.000000e+00 2239.0
11 TraesCS3D01G339500 chr3A 96.186 236 7 2 2033 2266 594799785 594800020 3.720000e-103 385.0
12 TraesCS3D01G339500 chr3A 94.118 119 7 0 2266 2384 163893466 163893584 5.230000e-42 182.0
13 TraesCS3D01G339500 chr3A 88.189 127 13 2 1813 1938 589193800 589193925 1.480000e-32 150.0
14 TraesCS3D01G339500 chr4A 96.667 120 4 0 2265 2384 578378873 578378992 1.450000e-47 200.0
15 TraesCS3D01G339500 chr4A 81.818 99 14 4 1946 2042 4286045 4285949 1.960000e-11 80.5
16 TraesCS3D01G339500 chr6D 95.833 120 5 0 2265 2384 454064140 454064259 6.720000e-46 195.0
17 TraesCS3D01G339500 chr6D 98.214 56 1 0 1757 1812 160314785 160314840 5.420000e-17 99.0
18 TraesCS3D01G339500 chr6D 96.610 59 2 0 1757 1815 411828889 411828831 5.420000e-17 99.0
19 TraesCS3D01G339500 chr4D 95.763 118 5 0 2267 2384 449386834 449386717 8.700000e-45 191.0
20 TraesCS3D01G339500 chr4D 85.859 99 10 4 1946 2042 466298321 466298417 4.190000e-18 102.0
21 TraesCS3D01G339500 chr4D 98.214 56 1 0 1757 1812 278810125 278810180 5.420000e-17 99.0
22 TraesCS3D01G339500 chr4D 83.673 98 13 3 1946 2042 466381584 466381679 3.260000e-14 89.8
23 TraesCS3D01G339500 chr4D 83.019 106 11 6 1946 2047 487376652 487376550 3.260000e-14 89.8
24 TraesCS3D01G339500 chr1D 95.000 120 6 0 2265 2384 466407125 466407006 3.130000e-44 189.0
25 TraesCS3D01G339500 chr1D 85.859 99 7 6 1949 2042 62576695 62576791 5.420000e-17 99.0
26 TraesCS3D01G339500 chr1D 98.214 56 1 0 1757 1812 268076045 268076100 5.420000e-17 99.0
27 TraesCS3D01G339500 chr1D 84.946 93 10 4 1667 1758 41820465 41820554 9.070000e-15 91.6
28 TraesCS3D01G339500 chr7D 94.167 120 7 0 2265 2384 475155397 475155278 1.460000e-42 183.0
29 TraesCS3D01G339500 chr7D 78.761 113 20 4 1830 1941 268331108 268330999 3.290000e-09 73.1
30 TraesCS3D01G339500 chr6B 94.167 120 7 0 2265 2384 114966761 114966880 1.460000e-42 183.0
31 TraesCS3D01G339500 chr7A 94.118 119 7 0 2266 2384 239188925 239188807 5.230000e-42 182.0
32 TraesCS3D01G339500 chr7A 85.039 127 16 3 1813 1938 609576383 609576507 2.490000e-25 126.0
33 TraesCS3D01G339500 chr7A 86.957 115 7 3 1822 1936 64475106 64475000 3.220000e-24 122.0
34 TraesCS3D01G339500 chr7A 86.765 68 8 1 1665 1732 538339305 538339371 9.140000e-10 75.0
35 TraesCS3D01G339500 chr2A 89.764 127 12 1 1813 1938 624445979 624446105 6.820000e-36 161.0
36 TraesCS3D01G339500 chr2A 84.921 126 10 3 1813 1938 764320654 764320770 4.160000e-23 119.0
37 TraesCS3D01G339500 chr4B 87.597 129 14 2 1809 1936 662780694 662780567 5.310000e-32 148.0
38 TraesCS3D01G339500 chr4B 82.677 127 21 1 1813 1938 288928024 288928150 6.970000e-21 111.0
39 TraesCS3D01G339500 chrUn 96.610 59 2 0 1757 1815 320245690 320245632 5.420000e-17 99.0
40 TraesCS3D01G339500 chr5D 98.214 56 1 0 1757 1812 54613317 54613372 5.420000e-17 99.0
41 TraesCS3D01G339500 chr7B 89.189 74 6 2 1757 1829 556428489 556428417 9.070000e-15 91.6
42 TraesCS3D01G339500 chr2D 90.000 70 7 0 1669 1738 413788409 413788478 9.070000e-15 91.6
43 TraesCS3D01G339500 chr5B 83.505 97 11 5 1953 2047 554593761 554593668 4.220000e-13 86.1
44 TraesCS3D01G339500 chr2B 79.487 117 16 7 1830 1941 31057538 31057425 2.540000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G339500 chr3D 452484808 452487191 2383 False 4403.00 4403 100.0000 1 2384 1 chr3D.!!$F2 2383
1 TraesCS3D01G339500 chr3B 594441008 594443526 2518 False 733.75 2492 93.9695 5 2266 4 chr3B.!!$F2 2261
2 TraesCS3D01G339500 chr3A 594797649 594800020 2371 False 1312.00 2239 93.5075 10 2266 2 chr3A.!!$F3 2256

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
544 552 0.713883 AGCGCTCGTGATTAACAACG 59.286 50.0 2.64 5.6 0.0 4.1 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1819 1899 0.108585 GAGGCGGGGCTCATAATTGA 59.891 55.0 16.39 0.0 0.0 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
214 219 3.074390 AGATTGGGGTTCAGTGTCATTCA 59.926 43.478 0.00 0.00 0.00 2.57
288 294 6.192234 AGATCTCTTTAGCGACTCGTTTTA 57.808 37.500 0.00 0.00 0.00 1.52
444 450 2.158841 ACCAACGTGCTTATACTTTGCG 59.841 45.455 0.00 0.00 30.89 4.85
464 470 4.212636 TGCGGAACTAAAGCTTCTGTAAAC 59.787 41.667 0.00 0.00 0.00 2.01
522 530 3.555956 GCATGGTCTACGTGTAAATCCAG 59.444 47.826 0.00 0.00 38.39 3.86
544 552 0.713883 AGCGCTCGTGATTAACAACG 59.286 50.000 2.64 5.60 0.00 4.10
555 563 5.281376 CGTGATTAACAACGCAAAATCTCAG 59.719 40.000 0.00 0.00 31.16 3.35
644 652 1.219522 GCAGGCAACGTACGTGAACT 61.220 55.000 23.57 16.52 46.39 3.01
726 746 2.628106 CCGATTGCGCTGGATTCG 59.372 61.111 9.73 9.76 35.83 3.34
780 803 4.968181 CACACGTACAGTACTTATCCGATG 59.032 45.833 9.10 0.00 0.00 3.84
786 809 2.365617 CAGTACTTATCCGATGCTGGGT 59.634 50.000 0.00 0.00 0.00 4.51
798 821 1.125093 TGCTGGGTTCCTTTCCTCGA 61.125 55.000 0.00 0.00 0.00 4.04
875 904 4.450082 ACAACAACAAACTTCTTGGACC 57.550 40.909 0.00 0.00 0.00 4.46
1392 1436 2.125912 ATCGTGTGAGCCGTCTGC 60.126 61.111 0.00 0.00 41.71 4.26
1473 1517 2.811317 GTCCTTCTGCAGTCCGCG 60.811 66.667 14.67 0.00 46.97 6.46
1474 1518 3.303135 TCCTTCTGCAGTCCGCGT 61.303 61.111 14.67 0.00 46.97 6.01
1477 1521 1.080772 CTTCTGCAGTCCGCGTACA 60.081 57.895 14.67 0.00 46.97 2.90
1528 1596 2.247358 GGGGAATTTTGCTCCTGACAA 58.753 47.619 0.00 0.00 33.11 3.18
1598 1670 2.923605 TTTGTTTCGTTGGTTCGCTT 57.076 40.000 0.00 0.00 0.00 4.68
1632 1704 5.314923 AGGATACGTACGAGCACTTTTTA 57.685 39.130 24.41 0.04 46.39 1.52
1633 1705 5.098211 AGGATACGTACGAGCACTTTTTAC 58.902 41.667 24.41 0.00 46.39 2.01
1634 1706 5.098211 GGATACGTACGAGCACTTTTTACT 58.902 41.667 24.41 0.00 0.00 2.24
1635 1707 5.574443 GGATACGTACGAGCACTTTTTACTT 59.426 40.000 24.41 0.00 0.00 2.24
1711 1791 7.707624 TCAGATTTTTAGACATGCCAAATCT 57.292 32.000 10.25 10.25 42.36 2.40
1758 1838 5.895636 TGGTGTGATGATGACCAATTTAC 57.104 39.130 0.00 0.00 36.81 2.01
1759 1839 5.569355 TGGTGTGATGATGACCAATTTACT 58.431 37.500 0.00 0.00 36.81 2.24
1761 1841 5.066505 GGTGTGATGATGACCAATTTACTCC 59.933 44.000 0.00 0.00 0.00 3.85
1762 1842 5.066505 GTGTGATGATGACCAATTTACTCCC 59.933 44.000 0.00 0.00 0.00 4.30
1763 1843 5.044919 TGTGATGATGACCAATTTACTCCCT 60.045 40.000 0.00 0.00 0.00 4.20
1764 1844 5.529060 GTGATGATGACCAATTTACTCCCTC 59.471 44.000 0.00 0.00 0.00 4.30
1765 1845 4.503714 TGATGACCAATTTACTCCCTCC 57.496 45.455 0.00 0.00 0.00 4.30
1767 1847 2.262637 TGACCAATTTACTCCCTCCGT 58.737 47.619 0.00 0.00 0.00 4.69
1768 1848 2.640826 TGACCAATTTACTCCCTCCGTT 59.359 45.455 0.00 0.00 0.00 4.44
1772 1852 3.560453 CCAATTTACTCCCTCCGTTCCAA 60.560 47.826 0.00 0.00 0.00 3.53
1776 1856 5.502089 TTTACTCCCTCCGTTCCAAAATA 57.498 39.130 0.00 0.00 0.00 1.40
1777 1857 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
1778 1858 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
1779 1859 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
1780 1860 4.966805 ACTCCCTCCGTTCCAAAATAGATA 59.033 41.667 0.00 0.00 0.00 1.98
1781 1861 5.427481 ACTCCCTCCGTTCCAAAATAGATAA 59.573 40.000 0.00 0.00 0.00 1.75
1782 1862 5.677567 TCCCTCCGTTCCAAAATAGATAAC 58.322 41.667 0.00 0.00 0.00 1.89
1783 1863 5.427481 TCCCTCCGTTCCAAAATAGATAACT 59.573 40.000 0.00 0.00 0.00 2.24
1784 1864 5.758784 CCCTCCGTTCCAAAATAGATAACTC 59.241 44.000 0.00 0.00 0.00 3.01
1785 1865 6.346096 CCTCCGTTCCAAAATAGATAACTCA 58.654 40.000 0.00 0.00 0.00 3.41
1786 1866 6.821665 CCTCCGTTCCAAAATAGATAACTCAA 59.178 38.462 0.00 0.00 0.00 3.02
1787 1867 7.201617 CCTCCGTTCCAAAATAGATAACTCAAC 60.202 40.741 0.00 0.00 0.00 3.18
1788 1868 7.391620 TCCGTTCCAAAATAGATAACTCAACT 58.608 34.615 0.00 0.00 0.00 3.16
1789 1869 7.881232 TCCGTTCCAAAATAGATAACTCAACTT 59.119 33.333 0.00 0.00 0.00 2.66
1790 1870 8.512138 CCGTTCCAAAATAGATAACTCAACTTT 58.488 33.333 0.00 0.00 0.00 2.66
1791 1871 9.329913 CGTTCCAAAATAGATAACTCAACTTTG 57.670 33.333 0.00 0.00 0.00 2.77
1832 1912 7.440523 AAGTCGAATATTCAATTATGAGCCC 57.559 36.000 15.57 0.00 36.78 5.19
1833 1913 5.940470 AGTCGAATATTCAATTATGAGCCCC 59.060 40.000 15.57 0.00 36.78 5.80
1834 1914 4.935205 TCGAATATTCAATTATGAGCCCCG 59.065 41.667 15.57 0.00 36.78 5.73
1835 1915 4.437390 CGAATATTCAATTATGAGCCCCGC 60.437 45.833 15.57 0.00 36.78 6.13
1836 1916 1.620822 ATTCAATTATGAGCCCCGCC 58.379 50.000 0.00 0.00 36.78 6.13
1837 1917 0.550914 TTCAATTATGAGCCCCGCCT 59.449 50.000 0.00 0.00 36.78 5.52
1838 1918 0.108585 TCAATTATGAGCCCCGCCTC 59.891 55.000 0.00 0.00 0.00 4.70
1839 1919 1.071471 AATTATGAGCCCCGCCTCG 59.929 57.895 0.00 0.00 34.56 4.63
1840 1920 1.696097 AATTATGAGCCCCGCCTCGT 61.696 55.000 0.00 0.00 34.56 4.18
1841 1921 2.100879 ATTATGAGCCCCGCCTCGTC 62.101 60.000 0.00 0.00 34.56 4.20
1842 1922 3.733507 TATGAGCCCCGCCTCGTCT 62.734 63.158 0.00 0.00 34.56 4.18
1852 1932 4.436998 CCTCGTCTGCACCCGGTC 62.437 72.222 0.00 0.00 0.00 4.79
1853 1933 3.680786 CTCGTCTGCACCCGGTCA 61.681 66.667 0.00 0.00 0.00 4.02
1854 1934 3.220999 CTCGTCTGCACCCGGTCAA 62.221 63.158 0.00 0.00 0.00 3.18
1855 1935 2.738521 CGTCTGCACCCGGTCAAG 60.739 66.667 0.00 0.00 0.00 3.02
1856 1936 2.741092 GTCTGCACCCGGTCAAGA 59.259 61.111 0.00 0.00 0.00 3.02
1857 1937 1.070786 GTCTGCACCCGGTCAAGAA 59.929 57.895 0.00 0.00 0.00 2.52
1858 1938 0.534203 GTCTGCACCCGGTCAAGAAA 60.534 55.000 0.00 0.00 0.00 2.52
1859 1939 0.400213 TCTGCACCCGGTCAAGAAAT 59.600 50.000 0.00 0.00 0.00 2.17
1860 1940 1.626321 TCTGCACCCGGTCAAGAAATA 59.374 47.619 0.00 0.00 0.00 1.40
1861 1941 2.039216 TCTGCACCCGGTCAAGAAATAA 59.961 45.455 0.00 0.00 0.00 1.40
1862 1942 3.016736 CTGCACCCGGTCAAGAAATAAT 58.983 45.455 0.00 0.00 0.00 1.28
1863 1943 3.426615 TGCACCCGGTCAAGAAATAATT 58.573 40.909 0.00 0.00 0.00 1.40
1864 1944 3.442273 TGCACCCGGTCAAGAAATAATTC 59.558 43.478 0.00 0.00 35.70 2.17
1865 1945 3.442273 GCACCCGGTCAAGAAATAATTCA 59.558 43.478 0.00 0.00 38.06 2.57
1866 1946 4.097892 GCACCCGGTCAAGAAATAATTCAT 59.902 41.667 0.00 0.00 38.06 2.57
1925 2146 5.833406 TGTGCATGGTAGATAATTTGGTG 57.167 39.130 0.00 0.00 0.00 4.17
1926 2147 5.260424 TGTGCATGGTAGATAATTTGGTGT 58.740 37.500 0.00 0.00 0.00 4.16
1927 2148 5.125257 TGTGCATGGTAGATAATTTGGTGTG 59.875 40.000 0.00 0.00 0.00 3.82
1929 2150 5.125257 TGCATGGTAGATAATTTGGTGTGTG 59.875 40.000 0.00 0.00 0.00 3.82
1930 2151 5.356751 GCATGGTAGATAATTTGGTGTGTGA 59.643 40.000 0.00 0.00 0.00 3.58
1931 2152 6.458751 GCATGGTAGATAATTTGGTGTGTGAG 60.459 42.308 0.00 0.00 0.00 3.51
1933 2154 5.013704 TGGTAGATAATTTGGTGTGTGAGGT 59.986 40.000 0.00 0.00 0.00 3.85
1934 2155 5.354234 GGTAGATAATTTGGTGTGTGAGGTG 59.646 44.000 0.00 0.00 0.00 4.00
1936 2157 0.667993 AATTTGGTGTGTGAGGTGCG 59.332 50.000 0.00 0.00 0.00 5.34
1937 2158 1.795170 ATTTGGTGTGTGAGGTGCGC 61.795 55.000 0.00 0.00 0.00 6.09
1938 2159 3.689002 TTGGTGTGTGAGGTGCGCA 62.689 57.895 5.66 5.66 33.90 6.09
1949 2202 4.302154 GTGCGCACCTCACAAAAC 57.698 55.556 30.12 0.00 34.73 2.43
1968 2221 4.436113 AACAAACAAAAATCCAGCCCAT 57.564 36.364 0.00 0.00 0.00 4.00
1972 2225 6.360618 ACAAACAAAAATCCAGCCCATAAAA 58.639 32.000 0.00 0.00 0.00 1.52
1973 2226 6.262049 ACAAACAAAAATCCAGCCCATAAAAC 59.738 34.615 0.00 0.00 0.00 2.43
2025 2279 8.755018 CATATTTGTCTTTTCTTTGAACACCAC 58.245 33.333 0.00 0.00 0.00 4.16
2033 2287 2.675844 TCTTTGAACACCACGTGTGAAG 59.324 45.455 15.65 11.43 46.79 3.02
2034 2288 2.102070 TTGAACACCACGTGTGAAGT 57.898 45.000 15.65 1.65 46.79 3.01
2035 2289 2.963548 TGAACACCACGTGTGAAGTA 57.036 45.000 15.65 0.00 46.79 2.24
2093 2389 3.281341 TGCGCTGTAGAAAATGGTTTG 57.719 42.857 9.73 0.00 0.00 2.93
2288 2696 4.561735 TTTTTGCGAGAAAACTTCCGAT 57.438 36.364 0.00 0.00 0.00 4.18
2289 2697 3.806316 TTTGCGAGAAAACTTCCGATC 57.194 42.857 0.00 0.00 0.00 3.69
2290 2698 2.743636 TGCGAGAAAACTTCCGATCT 57.256 45.000 0.00 0.00 0.00 2.75
2291 2699 3.861276 TGCGAGAAAACTTCCGATCTA 57.139 42.857 0.00 0.00 0.00 1.98
2292 2700 4.386867 TGCGAGAAAACTTCCGATCTAT 57.613 40.909 0.00 0.00 0.00 1.98
2293 2701 4.755411 TGCGAGAAAACTTCCGATCTATT 58.245 39.130 0.00 0.00 0.00 1.73
2294 2702 4.804139 TGCGAGAAAACTTCCGATCTATTC 59.196 41.667 0.00 0.00 0.00 1.75
2295 2703 4.804139 GCGAGAAAACTTCCGATCTATTCA 59.196 41.667 0.00 0.00 0.00 2.57
2296 2704 5.463724 GCGAGAAAACTTCCGATCTATTCAT 59.536 40.000 0.00 0.00 0.00 2.57
2297 2705 6.346199 GCGAGAAAACTTCCGATCTATTCATC 60.346 42.308 0.00 0.00 0.00 2.92
2298 2706 6.697455 CGAGAAAACTTCCGATCTATTCATCA 59.303 38.462 0.00 0.00 0.00 3.07
2299 2707 7.222805 CGAGAAAACTTCCGATCTATTCATCAA 59.777 37.037 0.00 0.00 0.00 2.57
2300 2708 8.202745 AGAAAACTTCCGATCTATTCATCAAC 57.797 34.615 0.00 0.00 0.00 3.18
2301 2709 8.043710 AGAAAACTTCCGATCTATTCATCAACT 58.956 33.333 0.00 0.00 0.00 3.16
2302 2710 7.545362 AAACTTCCGATCTATTCATCAACTG 57.455 36.000 0.00 0.00 0.00 3.16
2303 2711 6.227298 ACTTCCGATCTATTCATCAACTGT 57.773 37.500 0.00 0.00 0.00 3.55
2304 2712 6.644347 ACTTCCGATCTATTCATCAACTGTT 58.356 36.000 0.00 0.00 0.00 3.16
2305 2713 7.782049 ACTTCCGATCTATTCATCAACTGTTA 58.218 34.615 0.00 0.00 0.00 2.41
2306 2714 8.258007 ACTTCCGATCTATTCATCAACTGTTAA 58.742 33.333 0.00 0.00 0.00 2.01
2307 2715 8.648557 TTCCGATCTATTCATCAACTGTTAAG 57.351 34.615 0.00 0.00 0.00 1.85
2308 2716 7.210174 TCCGATCTATTCATCAACTGTTAAGG 58.790 38.462 0.00 0.00 0.00 2.69
2309 2717 6.986817 CCGATCTATTCATCAACTGTTAAGGT 59.013 38.462 0.00 0.00 0.00 3.50
2310 2718 8.141909 CCGATCTATTCATCAACTGTTAAGGTA 58.858 37.037 0.00 0.00 0.00 3.08
2311 2719 9.186323 CGATCTATTCATCAACTGTTAAGGTAG 57.814 37.037 0.00 0.00 0.00 3.18
2317 2725 9.787435 ATTCATCAACTGTTAAGGTAGTACAAA 57.213 29.630 2.06 0.00 0.00 2.83
2318 2726 8.827177 TCATCAACTGTTAAGGTAGTACAAAG 57.173 34.615 2.06 0.00 0.00 2.77
2319 2727 8.644216 TCATCAACTGTTAAGGTAGTACAAAGA 58.356 33.333 2.06 0.00 0.00 2.52
2320 2728 9.268268 CATCAACTGTTAAGGTAGTACAAAGAA 57.732 33.333 2.06 0.00 0.00 2.52
2321 2729 8.652810 TCAACTGTTAAGGTAGTACAAAGAAC 57.347 34.615 2.06 1.82 0.00 3.01
2322 2730 8.259411 TCAACTGTTAAGGTAGTACAAAGAACA 58.741 33.333 2.06 6.00 0.00 3.18
2323 2731 8.333186 CAACTGTTAAGGTAGTACAAAGAACAC 58.667 37.037 2.06 0.00 0.00 3.32
2324 2732 7.789026 ACTGTTAAGGTAGTACAAAGAACACT 58.211 34.615 2.06 0.00 0.00 3.55
2325 2733 8.917088 ACTGTTAAGGTAGTACAAAGAACACTA 58.083 33.333 2.06 0.00 0.00 2.74
2326 2734 9.408069 CTGTTAAGGTAGTACAAAGAACACTAG 57.592 37.037 2.06 0.00 0.00 2.57
2327 2735 9.135189 TGTTAAGGTAGTACAAAGAACACTAGA 57.865 33.333 2.06 0.00 0.00 2.43
2328 2736 9.971922 GTTAAGGTAGTACAAAGAACACTAGAA 57.028 33.333 2.06 0.00 0.00 2.10
2330 2738 7.836479 AGGTAGTACAAAGAACACTAGAAGT 57.164 36.000 2.06 0.00 0.00 3.01
2331 2739 8.930846 AGGTAGTACAAAGAACACTAGAAGTA 57.069 34.615 2.06 0.00 0.00 2.24
2332 2740 9.359653 AGGTAGTACAAAGAACACTAGAAGTAA 57.640 33.333 2.06 0.00 0.00 2.24
2333 2741 9.971922 GGTAGTACAAAGAACACTAGAAGTAAA 57.028 33.333 2.06 0.00 0.00 2.01
2351 2759 9.449719 AGAAGTAAAATTTACATTCAGATCCGT 57.550 29.630 17.00 0.59 0.00 4.69
2356 2764 7.787725 AAATTTACATTCAGATCCGTAGACC 57.212 36.000 0.00 0.00 0.00 3.85
2357 2765 5.925506 TTTACATTCAGATCCGTAGACCA 57.074 39.130 0.00 0.00 0.00 4.02
2358 2766 3.802948 ACATTCAGATCCGTAGACCAC 57.197 47.619 0.00 0.00 0.00 4.16
2359 2767 2.431057 ACATTCAGATCCGTAGACCACC 59.569 50.000 0.00 0.00 0.00 4.61
2360 2768 2.526888 TTCAGATCCGTAGACCACCT 57.473 50.000 0.00 0.00 0.00 4.00
2361 2769 3.657398 TTCAGATCCGTAGACCACCTA 57.343 47.619 0.00 0.00 0.00 3.08
2362 2770 3.210232 TCAGATCCGTAGACCACCTAG 57.790 52.381 0.00 0.00 0.00 3.02
2363 2771 1.609555 CAGATCCGTAGACCACCTAGC 59.390 57.143 0.00 0.00 0.00 3.42
2364 2772 0.592148 GATCCGTAGACCACCTAGCG 59.408 60.000 0.00 0.00 0.00 4.26
2365 2773 0.182061 ATCCGTAGACCACCTAGCGA 59.818 55.000 0.00 0.00 0.00 4.93
2366 2774 0.745845 TCCGTAGACCACCTAGCGAC 60.746 60.000 0.00 0.00 0.00 5.19
2367 2775 1.351012 CGTAGACCACCTAGCGACG 59.649 63.158 0.00 0.00 0.00 5.12
2368 2776 1.086067 CGTAGACCACCTAGCGACGA 61.086 60.000 0.00 0.00 0.00 4.20
2369 2777 0.376502 GTAGACCACCTAGCGACGAC 59.623 60.000 0.00 0.00 0.00 4.34
2370 2778 0.251354 TAGACCACCTAGCGACGACT 59.749 55.000 0.00 0.00 0.00 4.18
2371 2779 0.251354 AGACCACCTAGCGACGACTA 59.749 55.000 0.00 0.00 0.00 2.59
2372 2780 0.376502 GACCACCTAGCGACGACTAC 59.623 60.000 0.00 0.00 0.00 2.73
2373 2781 0.321919 ACCACCTAGCGACGACTACA 60.322 55.000 0.00 0.00 0.00 2.74
2374 2782 0.806868 CCACCTAGCGACGACTACAA 59.193 55.000 0.00 0.00 0.00 2.41
2375 2783 1.200716 CCACCTAGCGACGACTACAAA 59.799 52.381 0.00 0.00 0.00 2.83
2376 2784 2.248487 CACCTAGCGACGACTACAAAC 58.752 52.381 0.00 0.00 0.00 2.93
2377 2785 1.881973 ACCTAGCGACGACTACAAACA 59.118 47.619 0.00 0.00 0.00 2.83
2378 2786 2.248487 CCTAGCGACGACTACAAACAC 58.752 52.381 0.00 0.00 0.00 3.32
2379 2787 2.095364 CCTAGCGACGACTACAAACACT 60.095 50.000 0.00 0.00 0.00 3.55
2380 2788 1.767289 AGCGACGACTACAAACACTG 58.233 50.000 0.00 0.00 0.00 3.66
2381 2789 0.782384 GCGACGACTACAAACACTGG 59.218 55.000 0.00 0.00 0.00 4.00
2382 2790 1.601162 GCGACGACTACAAACACTGGA 60.601 52.381 0.00 0.00 0.00 3.86
2383 2791 2.316792 CGACGACTACAAACACTGGAG 58.683 52.381 0.00 0.00 42.47 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.733556 ATTTTGAAGTTTTAGGTTTTGAAGGTT 57.266 25.926 0.00 0.00 0.00 3.50
1 2 9.733556 AATTTTGAAGTTTTAGGTTTTGAAGGT 57.266 25.926 0.00 0.00 0.00 3.50
25 26 3.669344 CGCACGGGGCACACAAAT 61.669 61.111 1.92 0.00 45.17 2.32
86 89 2.887568 CGCATGAGCCCAGTCGTC 60.888 66.667 0.00 0.00 37.52 4.20
98 101 0.108804 AACTCGTAGGGACACGCATG 60.109 55.000 0.00 0.00 41.67 4.06
288 294 4.280819 AGTATGCATGGGTTAAGCACAAT 58.719 39.130 10.16 0.00 41.60 2.71
444 450 8.349983 TGAATTGTTTACAGAAGCTTTAGTTCC 58.650 33.333 0.00 0.00 0.00 3.62
464 470 4.506758 CTTTGCCCCCAAATACTGAATTG 58.493 43.478 0.00 0.00 39.98 2.32
522 530 1.348594 GTTAATCACGAGCGCTGGC 59.651 57.895 18.48 0.00 40.37 4.85
644 652 3.129109 AGAAGATCGATCGTGCTACGTA 58.871 45.455 18.77 0.00 43.14 3.57
726 746 0.039527 CCCAAACAAACTACCGCAGC 60.040 55.000 0.00 0.00 0.00 5.25
728 748 2.634815 TACCCAAACAAACTACCGCA 57.365 45.000 0.00 0.00 0.00 5.69
780 803 0.391793 CTCGAGGAAAGGAACCCAGC 60.392 60.000 3.91 0.00 0.00 4.85
786 809 2.126071 CGCGCTCGAGGAAAGGAA 60.126 61.111 15.58 0.00 38.10 3.36
798 821 1.153549 GAGGAAACAGATCCGCGCT 60.154 57.895 5.56 0.00 44.60 5.92
1020 1061 1.299468 GACCACGCCGAGAGCTATG 60.299 63.158 0.00 0.00 40.39 2.23
1179 1220 2.676822 TCCTCGCGCTTGGTCTCT 60.677 61.111 5.56 0.00 0.00 3.10
1347 1391 3.338126 GATGTCCGTCCGCGACAGT 62.338 63.158 8.23 0.00 41.33 3.55
1477 1521 3.771160 GGATGAGGACACGGCCGT 61.771 66.667 28.70 28.70 0.00 5.68
1528 1596 8.648693 ACACAAAACTACTAGTATGTCTTCCTT 58.351 33.333 2.33 0.00 29.40 3.36
1643 1723 6.535150 TCCGTAAGATAATGCTTGTCAGAAAG 59.465 38.462 0.00 0.00 43.02 2.62
1647 1727 6.092122 TGTTTCCGTAAGATAATGCTTGTCAG 59.908 38.462 0.00 0.00 43.02 3.51
1704 1784 8.712285 ATTGTCATGAAAAATGCTAGATTTGG 57.288 30.769 1.55 0.00 0.00 3.28
1758 1838 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
1759 1839 5.427481 AGTTATCTATTTTGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
1761 1841 6.346096 TGAGTTATCTATTTTGGAACGGAGG 58.654 40.000 0.00 0.00 0.00 4.30
1762 1842 7.549488 AGTTGAGTTATCTATTTTGGAACGGAG 59.451 37.037 0.00 0.00 0.00 4.63
1763 1843 7.391620 AGTTGAGTTATCTATTTTGGAACGGA 58.608 34.615 0.00 0.00 0.00 4.69
1764 1844 7.611213 AGTTGAGTTATCTATTTTGGAACGG 57.389 36.000 0.00 0.00 0.00 4.44
1765 1845 9.329913 CAAAGTTGAGTTATCTATTTTGGAACG 57.670 33.333 0.00 0.00 35.65 3.95
1806 1886 8.999431 GGGCTCATAATTGAATATTCGACTTTA 58.001 33.333 7.58 4.67 0.00 1.85
1807 1887 7.040409 GGGGCTCATAATTGAATATTCGACTTT 60.040 37.037 7.58 2.60 0.00 2.66
1808 1888 6.431234 GGGGCTCATAATTGAATATTCGACTT 59.569 38.462 7.58 5.13 0.00 3.01
1809 1889 5.940470 GGGGCTCATAATTGAATATTCGACT 59.060 40.000 7.58 0.00 0.00 4.18
1810 1890 5.163854 CGGGGCTCATAATTGAATATTCGAC 60.164 44.000 7.58 0.00 0.00 4.20
1811 1891 4.935205 CGGGGCTCATAATTGAATATTCGA 59.065 41.667 7.86 7.86 0.00 3.71
1812 1892 4.437390 GCGGGGCTCATAATTGAATATTCG 60.437 45.833 10.80 0.00 0.00 3.34
1813 1893 4.142381 GGCGGGGCTCATAATTGAATATTC 60.142 45.833 8.60 8.60 0.00 1.75
1814 1894 3.763897 GGCGGGGCTCATAATTGAATATT 59.236 43.478 0.00 0.00 0.00 1.28
1815 1895 3.010584 AGGCGGGGCTCATAATTGAATAT 59.989 43.478 0.00 0.00 0.00 1.28
1816 1896 2.375174 AGGCGGGGCTCATAATTGAATA 59.625 45.455 0.00 0.00 0.00 1.75
1817 1897 1.145738 AGGCGGGGCTCATAATTGAAT 59.854 47.619 0.00 0.00 0.00 2.57
1818 1898 0.550914 AGGCGGGGCTCATAATTGAA 59.449 50.000 0.00 0.00 0.00 2.69
1819 1899 0.108585 GAGGCGGGGCTCATAATTGA 59.891 55.000 16.39 0.00 0.00 2.57
1820 1900 1.230635 CGAGGCGGGGCTCATAATTG 61.231 60.000 20.30 1.31 0.00 2.32
1821 1901 1.071471 CGAGGCGGGGCTCATAATT 59.929 57.895 20.30 0.00 0.00 1.40
1822 1902 2.100879 GACGAGGCGGGGCTCATAAT 62.101 60.000 20.30 4.41 0.00 1.28
1823 1903 2.762459 ACGAGGCGGGGCTCATAA 60.762 61.111 20.30 0.00 0.00 1.90
1824 1904 3.224324 GACGAGGCGGGGCTCATA 61.224 66.667 20.30 0.00 0.00 2.15
1835 1915 4.436998 GACCGGGTGCAGACGAGG 62.437 72.222 3.30 5.88 0.00 4.63
1836 1916 3.220999 TTGACCGGGTGCAGACGAG 62.221 63.158 3.30 4.65 0.00 4.18
1837 1917 3.220999 CTTGACCGGGTGCAGACGA 62.221 63.158 3.30 0.00 0.00 4.20
1838 1918 2.709125 TTCTTGACCGGGTGCAGACG 62.709 60.000 3.30 3.14 0.00 4.18
1839 1919 0.534203 TTTCTTGACCGGGTGCAGAC 60.534 55.000 3.30 0.00 0.00 3.51
1840 1920 0.400213 ATTTCTTGACCGGGTGCAGA 59.600 50.000 3.30 2.16 0.00 4.26
1841 1921 2.107950 TATTTCTTGACCGGGTGCAG 57.892 50.000 3.30 0.00 0.00 4.41
1842 1922 2.570415 TTATTTCTTGACCGGGTGCA 57.430 45.000 3.30 0.00 0.00 4.57
1843 1923 3.442273 TGAATTATTTCTTGACCGGGTGC 59.558 43.478 3.30 0.00 32.78 5.01
1844 1924 5.835113 ATGAATTATTTCTTGACCGGGTG 57.165 39.130 3.30 0.00 32.78 4.61
1845 1925 7.948034 TTTATGAATTATTTCTTGACCGGGT 57.052 32.000 6.32 0.00 32.78 5.28
1899 2120 7.601886 CACCAAATTATCTACCATGCACAAAAA 59.398 33.333 0.00 0.00 0.00 1.94
1900 2121 7.095910 CACCAAATTATCTACCATGCACAAAA 58.904 34.615 0.00 0.00 0.00 2.44
1901 2122 6.210385 ACACCAAATTATCTACCATGCACAAA 59.790 34.615 0.00 0.00 0.00 2.83
1904 2125 5.125417 ACACACCAAATTATCTACCATGCAC 59.875 40.000 0.00 0.00 0.00 4.57
1907 2128 6.038603 CCTCACACACCAAATTATCTACCATG 59.961 42.308 0.00 0.00 0.00 3.66
1908 2129 6.122277 CCTCACACACCAAATTATCTACCAT 58.878 40.000 0.00 0.00 0.00 3.55
1909 2130 5.013704 ACCTCACACACCAAATTATCTACCA 59.986 40.000 0.00 0.00 0.00 3.25
1910 2131 5.354234 CACCTCACACACCAAATTATCTACC 59.646 44.000 0.00 0.00 0.00 3.18
1911 2132 5.163754 GCACCTCACACACCAAATTATCTAC 60.164 44.000 0.00 0.00 0.00 2.59
1912 2133 4.941263 GCACCTCACACACCAAATTATCTA 59.059 41.667 0.00 0.00 0.00 1.98
1913 2134 3.758554 GCACCTCACACACCAAATTATCT 59.241 43.478 0.00 0.00 0.00 1.98
1914 2135 3.426159 CGCACCTCACACACCAAATTATC 60.426 47.826 0.00 0.00 0.00 1.75
1915 2136 2.487762 CGCACCTCACACACCAAATTAT 59.512 45.455 0.00 0.00 0.00 1.28
1917 2138 0.667993 CGCACCTCACACACCAAATT 59.332 50.000 0.00 0.00 0.00 1.82
1920 2141 2.899838 GCGCACCTCACACACCAA 60.900 61.111 0.30 0.00 0.00 3.67
1933 2154 0.528017 TTTGTTTTGTGAGGTGCGCA 59.472 45.000 5.66 5.66 34.64 6.09
1934 2155 0.920664 GTTTGTTTTGTGAGGTGCGC 59.079 50.000 0.00 0.00 0.00 6.09
1936 2157 4.999751 TTTTGTTTGTTTTGTGAGGTGC 57.000 36.364 0.00 0.00 0.00 5.01
1937 2158 6.148480 TGGATTTTTGTTTGTTTTGTGAGGTG 59.852 34.615 0.00 0.00 0.00 4.00
1938 2159 6.234177 TGGATTTTTGTTTGTTTTGTGAGGT 58.766 32.000 0.00 0.00 0.00 3.85
1939 2160 6.675244 GCTGGATTTTTGTTTGTTTTGTGAGG 60.675 38.462 0.00 0.00 0.00 3.86
1940 2161 6.250089 GCTGGATTTTTGTTTGTTTTGTGAG 58.750 36.000 0.00 0.00 0.00 3.51
1941 2162 5.123027 GGCTGGATTTTTGTTTGTTTTGTGA 59.877 36.000 0.00 0.00 0.00 3.58
1942 2163 5.331098 GGCTGGATTTTTGTTTGTTTTGTG 58.669 37.500 0.00 0.00 0.00 3.33
1943 2164 4.397730 GGGCTGGATTTTTGTTTGTTTTGT 59.602 37.500 0.00 0.00 0.00 2.83
1944 2165 4.397417 TGGGCTGGATTTTTGTTTGTTTTG 59.603 37.500 0.00 0.00 0.00 2.44
1945 2166 4.593956 TGGGCTGGATTTTTGTTTGTTTT 58.406 34.783 0.00 0.00 0.00 2.43
1949 2202 6.261826 TGTTTTATGGGCTGGATTTTTGTTTG 59.738 34.615 0.00 0.00 0.00 2.93
2025 2279 3.723764 GCACACACATTTTACTTCACACG 59.276 43.478 0.00 0.00 0.00 4.49
2033 2287 5.029014 TGTAAACACGCACACACATTTTAC 58.971 37.500 0.00 0.00 0.00 2.01
2034 2288 5.064834 TCTGTAAACACGCACACACATTTTA 59.935 36.000 0.00 0.00 0.00 1.52
2035 2289 4.098055 TGTAAACACGCACACACATTTT 57.902 36.364 0.00 0.00 0.00 1.82
2064 2356 6.400303 CCATTTTCTACAGCGCAAAAGAATTG 60.400 38.462 11.47 13.95 0.00 2.32
2093 2389 0.319469 CCATGGTGGCCGTTTCAAAC 60.319 55.000 2.57 0.00 0.00 2.93
2267 2675 4.274950 AGATCGGAAGTTTTCTCGCAAAAA 59.725 37.500 0.00 0.00 0.00 1.94
2268 2676 3.813166 AGATCGGAAGTTTTCTCGCAAAA 59.187 39.130 0.00 0.00 0.00 2.44
2269 2677 3.399330 AGATCGGAAGTTTTCTCGCAAA 58.601 40.909 0.00 0.00 0.00 3.68
2270 2678 3.040147 AGATCGGAAGTTTTCTCGCAA 57.960 42.857 0.00 0.00 0.00 4.85
2271 2679 2.743636 AGATCGGAAGTTTTCTCGCA 57.256 45.000 0.00 0.00 0.00 5.10
2272 2680 4.804139 TGAATAGATCGGAAGTTTTCTCGC 59.196 41.667 0.00 0.00 0.00 5.03
2273 2681 6.697455 TGATGAATAGATCGGAAGTTTTCTCG 59.303 38.462 0.00 0.00 0.00 4.04
2274 2682 8.331742 GTTGATGAATAGATCGGAAGTTTTCTC 58.668 37.037 0.00 0.00 0.00 2.87
2275 2683 8.043710 AGTTGATGAATAGATCGGAAGTTTTCT 58.956 33.333 0.00 0.00 0.00 2.52
2276 2684 8.119226 CAGTTGATGAATAGATCGGAAGTTTTC 58.881 37.037 0.00 0.00 0.00 2.29
2277 2685 7.607991 ACAGTTGATGAATAGATCGGAAGTTTT 59.392 33.333 0.00 0.00 0.00 2.43
2278 2686 7.106239 ACAGTTGATGAATAGATCGGAAGTTT 58.894 34.615 0.00 0.00 0.00 2.66
2279 2687 6.644347 ACAGTTGATGAATAGATCGGAAGTT 58.356 36.000 0.00 0.00 0.00 2.66
2280 2688 6.227298 ACAGTTGATGAATAGATCGGAAGT 57.773 37.500 0.00 0.00 0.00 3.01
2281 2689 8.648557 TTAACAGTTGATGAATAGATCGGAAG 57.351 34.615 0.00 0.00 0.00 3.46
2282 2690 7.710907 CCTTAACAGTTGATGAATAGATCGGAA 59.289 37.037 0.00 0.00 0.00 4.30
2283 2691 7.147724 ACCTTAACAGTTGATGAATAGATCGGA 60.148 37.037 0.00 0.00 0.00 4.55
2284 2692 6.986817 ACCTTAACAGTTGATGAATAGATCGG 59.013 38.462 0.00 0.00 0.00 4.18
2285 2693 9.186323 CTACCTTAACAGTTGATGAATAGATCG 57.814 37.037 0.00 0.00 0.00 3.69
2291 2699 9.787435 TTTGTACTACCTTAACAGTTGATGAAT 57.213 29.630 0.00 0.00 0.00 2.57
2292 2700 9.268268 CTTTGTACTACCTTAACAGTTGATGAA 57.732 33.333 0.00 0.00 0.00 2.57
2293 2701 8.644216 TCTTTGTACTACCTTAACAGTTGATGA 58.356 33.333 0.00 0.00 0.00 2.92
2294 2702 8.827177 TCTTTGTACTACCTTAACAGTTGATG 57.173 34.615 0.00 0.00 0.00 3.07
2295 2703 9.269453 GTTCTTTGTACTACCTTAACAGTTGAT 57.731 33.333 0.00 0.00 0.00 2.57
2296 2704 8.259411 TGTTCTTTGTACTACCTTAACAGTTGA 58.741 33.333 0.00 0.00 0.00 3.18
2297 2705 8.333186 GTGTTCTTTGTACTACCTTAACAGTTG 58.667 37.037 0.00 0.00 0.00 3.16
2298 2706 8.262933 AGTGTTCTTTGTACTACCTTAACAGTT 58.737 33.333 0.00 0.00 0.00 3.16
2299 2707 7.789026 AGTGTTCTTTGTACTACCTTAACAGT 58.211 34.615 0.00 0.00 0.00 3.55
2300 2708 9.408069 CTAGTGTTCTTTGTACTACCTTAACAG 57.592 37.037 0.00 0.00 0.00 3.16
2301 2709 9.135189 TCTAGTGTTCTTTGTACTACCTTAACA 57.865 33.333 0.00 0.00 0.00 2.41
2302 2710 9.971922 TTCTAGTGTTCTTTGTACTACCTTAAC 57.028 33.333 0.00 0.00 0.00 2.01
2304 2712 9.359653 ACTTCTAGTGTTCTTTGTACTACCTTA 57.640 33.333 0.00 0.00 0.00 2.69
2305 2713 8.247666 ACTTCTAGTGTTCTTTGTACTACCTT 57.752 34.615 0.00 0.00 0.00 3.50
2306 2714 7.836479 ACTTCTAGTGTTCTTTGTACTACCT 57.164 36.000 0.00 0.00 0.00 3.08
2307 2715 9.971922 TTTACTTCTAGTGTTCTTTGTACTACC 57.028 33.333 0.00 0.00 0.00 3.18
2325 2733 9.449719 ACGGATCTGAATGTAAATTTTACTTCT 57.550 29.630 17.70 4.94 0.00 2.85
2330 2738 9.321562 GGTCTACGGATCTGAATGTAAATTTTA 57.678 33.333 9.00 0.00 0.00 1.52
2331 2739 7.827236 TGGTCTACGGATCTGAATGTAAATTTT 59.173 33.333 9.00 0.00 0.00 1.82
2332 2740 7.280205 GTGGTCTACGGATCTGAATGTAAATTT 59.720 37.037 9.00 0.00 0.00 1.82
2333 2741 6.761714 GTGGTCTACGGATCTGAATGTAAATT 59.238 38.462 9.00 0.00 0.00 1.82
2334 2742 6.281405 GTGGTCTACGGATCTGAATGTAAAT 58.719 40.000 9.00 0.00 0.00 1.40
2335 2743 5.394883 GGTGGTCTACGGATCTGAATGTAAA 60.395 44.000 9.00 0.00 0.00 2.01
2336 2744 4.098960 GGTGGTCTACGGATCTGAATGTAA 59.901 45.833 9.00 0.00 0.00 2.41
2337 2745 3.635373 GGTGGTCTACGGATCTGAATGTA 59.365 47.826 9.00 0.00 0.00 2.29
2338 2746 2.431057 GGTGGTCTACGGATCTGAATGT 59.569 50.000 9.00 0.00 0.00 2.71
2339 2747 2.695666 AGGTGGTCTACGGATCTGAATG 59.304 50.000 9.00 0.00 0.00 2.67
2340 2748 3.033659 AGGTGGTCTACGGATCTGAAT 57.966 47.619 9.00 0.00 0.00 2.57
2341 2749 2.526888 AGGTGGTCTACGGATCTGAA 57.473 50.000 9.00 0.00 0.00 3.02
2342 2750 2.748798 GCTAGGTGGTCTACGGATCTGA 60.749 54.545 9.00 0.00 0.00 3.27
2343 2751 1.609555 GCTAGGTGGTCTACGGATCTG 59.390 57.143 0.00 0.00 0.00 2.90
2344 2752 1.814634 CGCTAGGTGGTCTACGGATCT 60.815 57.143 0.00 0.00 0.00 2.75
2345 2753 0.592148 CGCTAGGTGGTCTACGGATC 59.408 60.000 0.00 0.00 0.00 3.36
2346 2754 0.182061 TCGCTAGGTGGTCTACGGAT 59.818 55.000 0.00 0.00 0.00 4.18
2347 2755 0.745845 GTCGCTAGGTGGTCTACGGA 60.746 60.000 0.00 0.00 0.00 4.69
2348 2756 1.726265 GTCGCTAGGTGGTCTACGG 59.274 63.158 0.00 0.00 0.00 4.02
2349 2757 1.086067 TCGTCGCTAGGTGGTCTACG 61.086 60.000 0.00 0.00 0.00 3.51
2350 2758 0.376502 GTCGTCGCTAGGTGGTCTAC 59.623 60.000 0.00 0.00 0.00 2.59
2351 2759 0.251354 AGTCGTCGCTAGGTGGTCTA 59.749 55.000 0.00 0.00 0.00 2.59
2352 2760 0.251354 TAGTCGTCGCTAGGTGGTCT 59.749 55.000 0.00 0.00 0.00 3.85
2353 2761 0.376502 GTAGTCGTCGCTAGGTGGTC 59.623 60.000 0.00 0.00 0.00 4.02
2354 2762 0.321919 TGTAGTCGTCGCTAGGTGGT 60.322 55.000 0.00 0.00 0.00 4.16
2355 2763 0.806868 TTGTAGTCGTCGCTAGGTGG 59.193 55.000 0.00 0.00 0.00 4.61
2356 2764 2.248487 GTTTGTAGTCGTCGCTAGGTG 58.752 52.381 0.00 0.00 0.00 4.00
2357 2765 1.881973 TGTTTGTAGTCGTCGCTAGGT 59.118 47.619 0.00 0.00 0.00 3.08
2358 2766 2.095364 AGTGTTTGTAGTCGTCGCTAGG 60.095 50.000 0.00 0.00 0.00 3.02
2359 2767 2.909244 CAGTGTTTGTAGTCGTCGCTAG 59.091 50.000 0.00 0.00 0.00 3.42
2360 2768 2.351060 CCAGTGTTTGTAGTCGTCGCTA 60.351 50.000 0.00 0.00 0.00 4.26
2361 2769 1.602165 CCAGTGTTTGTAGTCGTCGCT 60.602 52.381 0.00 0.00 0.00 4.93
2362 2770 0.782384 CCAGTGTTTGTAGTCGTCGC 59.218 55.000 0.00 0.00 0.00 5.19
2363 2771 2.316792 CTCCAGTGTTTGTAGTCGTCG 58.683 52.381 0.00 0.00 0.00 5.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.