Multiple sequence alignment - TraesCS3D01G338900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G338900 chr3D 100.000 3824 0 0 1 3824 452171001 452174824 0.000000e+00 7062.0
1 TraesCS3D01G338900 chr3D 93.082 1113 47 11 671 1764 452022858 452023959 0.000000e+00 1602.0
2 TraesCS3D01G338900 chr3D 91.477 1056 64 17 2271 3313 452024272 452025314 0.000000e+00 1428.0
3 TraesCS3D01G338900 chr3D 87.141 941 77 17 2242 3141 452015969 452016906 0.000000e+00 1027.0
4 TraesCS3D01G338900 chr3D 89.020 592 41 11 730 1314 452006511 452007085 0.000000e+00 712.0
5 TraesCS3D01G338900 chr3D 87.041 463 42 11 1318 1764 452014907 452015367 1.230000e-139 507.0
6 TraesCS3D01G338900 chr3D 89.116 147 13 1 3319 3462 452025345 452025491 3.040000e-41 180.0
7 TraesCS3D01G338900 chr3D 94.068 118 5 1 2087 2204 452024124 452024239 1.090000e-40 178.0
8 TraesCS3D01G338900 chr3D 89.062 128 12 2 738 864 452005214 452005340 1.420000e-34 158.0
9 TraesCS3D01G338900 chr3D 90.816 98 4 4 537 631 452022757 452022852 4.010000e-25 126.0
10 TraesCS3D01G338900 chr3D 80.328 122 12 9 1823 1932 452015355 452015476 8.800000e-12 82.4
11 TraesCS3D01G338900 chr3D 81.651 109 11 8 1823 1922 452023947 452024055 8.800000e-12 82.4
12 TraesCS3D01G338900 chr3B 89.844 1408 52 15 2106 3457 593556765 593558137 0.000000e+00 1724.0
13 TraesCS3D01G338900 chr3B 92.480 1117 56 9 663 1764 593553241 593554344 0.000000e+00 1572.0
14 TraesCS3D01G338900 chr3B 87.879 462 34 11 1932 2388 593554405 593554849 1.220000e-144 523.0
15 TraesCS3D01G338900 chr3B 88.571 385 29 7 3454 3824 593558226 593558609 1.620000e-123 453.0
16 TraesCS3D01G338900 chr3B 88.360 378 38 4 6 379 593552395 593552770 2.100000e-122 449.0
17 TraesCS3D01G338900 chr3B 94.505 91 5 0 2396 2486 593556562 593556652 1.430000e-29 141.0
18 TraesCS3D01G338900 chr3B 93.827 81 4 1 2037 2117 593556667 593556746 1.870000e-23 121.0
19 TraesCS3D01G338900 chr3B 77.143 245 30 15 784 1017 593548421 593548650 6.710000e-23 119.0
20 TraesCS3D01G338900 chr3B 91.463 82 6 1 567 648 593553178 593553258 1.120000e-20 111.0
21 TraesCS3D01G338900 chr3B 83.193 119 11 8 1823 1932 593554332 593554450 2.430000e-17 100.0
22 TraesCS3D01G338900 chr3A 88.394 1077 51 18 692 1756 594514399 594515413 0.000000e+00 1229.0
23 TraesCS3D01G338900 chr3A 88.584 692 57 12 3138 3824 594504354 594505028 0.000000e+00 821.0
24 TraesCS3D01G338900 chr3A 84.578 817 54 12 1932 2715 594515461 594516238 0.000000e+00 745.0
25 TraesCS3D01G338900 chr3A 85.475 537 57 11 1 533 594512502 594513021 1.210000e-149 540.0
26 TraesCS3D01G338900 chr3A 90.761 368 32 2 2711 3077 594518810 594519176 1.230000e-134 490.0
27 TraesCS3D01G338900 chr3A 89.418 378 32 5 3454 3824 594519690 594520066 1.610000e-128 470.0
28 TraesCS3D01G338900 chr3A 91.277 321 21 2 3138 3457 594519291 594519605 7.590000e-117 431.0
29 TraesCS3D01G338900 chr3A 89.209 139 12 3 2619 2756 594498615 594498751 1.830000e-38 171.0
30 TraesCS3D01G338900 chr3A 91.429 105 9 0 1934 2038 589791360 589791256 1.110000e-30 145.0
31 TraesCS3D01G338900 chr3A 76.042 288 40 19 2866 3141 594498790 594499060 5.190000e-24 122.0
32 TraesCS3D01G338900 chr3A 81.416 113 20 1 1277 1389 594497092 594497203 1.460000e-14 91.6
33 TraesCS3D01G338900 chr5B 90.196 204 17 2 133 333 646377955 646377752 2.930000e-66 263.0
34 TraesCS3D01G338900 chr4B 90.196 204 17 2 133 333 60080803 60081006 2.930000e-66 263.0
35 TraesCS3D01G338900 chr2A 90.196 204 17 2 133 333 98897415 98897618 2.930000e-66 263.0
36 TraesCS3D01G338900 chr1D 90.196 204 16 3 133 333 21448387 21448589 2.930000e-66 263.0
37 TraesCS3D01G338900 chr7B 89.806 206 16 4 133 333 31555662 31555867 3.790000e-65 259.0
38 TraesCS3D01G338900 chr5D 88.995 209 19 3 129 333 519704554 519704346 4.900000e-64 255.0
39 TraesCS3D01G338900 chr5D 87.879 99 12 0 1092 1190 519793218 519793316 2.410000e-22 117.0
40 TraesCS3D01G338900 chrUn 88.626 211 20 3 126 333 8098802 8098593 1.760000e-63 254.0
41 TraesCS3D01G338900 chr5A 87.879 99 12 0 1092 1190 646347898 646347996 2.410000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G338900 chr3D 452171001 452174824 3823 False 7062.000000 7062 100.000000 1 3824 1 chr3D.!!$F1 3823
1 TraesCS3D01G338900 chr3D 452022757 452025491 2734 False 599.400000 1602 90.035000 537 3462 6 chr3D.!!$F4 2925
2 TraesCS3D01G338900 chr3D 452014907 452016906 1999 False 538.800000 1027 84.836667 1318 3141 3 chr3D.!!$F3 1823
3 TraesCS3D01G338900 chr3D 452005214 452007085 1871 False 435.000000 712 89.041000 730 1314 2 chr3D.!!$F2 584
4 TraesCS3D01G338900 chr3B 593548421 593558609 10188 False 531.300000 1724 88.726500 6 3824 10 chr3B.!!$F1 3818
5 TraesCS3D01G338900 chr3A 594504354 594505028 674 False 821.000000 821 88.584000 3138 3824 1 chr3A.!!$F1 686
6 TraesCS3D01G338900 chr3A 594512502 594520066 7564 False 650.833333 1229 88.317167 1 3824 6 chr3A.!!$F3 3823

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
391 4368 0.169672 GGAGACATGCATGCACACAC 59.830 55.0 25.37 14.53 0.0 3.82 F
504 4481 0.173708 ACGTTAGCTAGCTGAGGCAC 59.826 55.0 27.68 13.72 41.7 5.01 F
1799 7365 0.034198 TCGGACGTTTGCTGATTGGA 59.966 50.0 0.00 0.00 0.0 3.53 F
2225 7804 0.255890 AGTGGTGTGCTTGTGTTCCT 59.744 50.0 0.00 0.00 0.0 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1780 7346 0.034198 TCCAATCAGCAAACGTCCGA 59.966 50.0 0.0 0.0 0.0 4.55 R
2206 7785 0.255890 AGGAACACAAGCACACCACT 59.744 50.0 0.0 0.0 0.0 4.00 R
2606 10698 0.385029 GCCACATGACACAACAGCAA 59.615 50.0 0.0 0.0 0.0 3.91 R
3568 14531 0.540830 CCTACTCTCTCCCCATCCGG 60.541 65.0 0.0 0.0 0.0 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 3995 6.478673 ACATGATTGCAGCATCAAATACATTG 59.521 34.615 5.21 0.87 40.58 2.82
122 4094 9.117145 CAATACATCGGAATTGGAAAATAATCG 57.883 33.333 0.00 0.00 30.93 3.34
171 4145 7.778470 AACTTCCGATCTATTCATCTTCAAC 57.222 36.000 0.00 0.00 0.00 3.18
291 4268 2.611964 ATCATCACCCCTCCCTCGCT 62.612 60.000 0.00 0.00 0.00 4.93
309 4286 2.146073 CTGGAGCCGGGCAAAACTTG 62.146 60.000 23.09 0.43 0.00 3.16
380 4357 3.313012 TTTCTACCACACGGAGACATG 57.687 47.619 0.00 0.00 35.59 3.21
383 4360 0.901827 TACCACACGGAGACATGCAT 59.098 50.000 0.00 0.00 35.59 3.96
391 4368 0.169672 GGAGACATGCATGCACACAC 59.830 55.000 25.37 14.53 0.00 3.82
394 4371 2.872463 CATGCATGCACACACGCG 60.872 61.111 25.37 3.53 33.35 6.01
410 4387 2.127646 CGCGCATCACACACACAC 60.128 61.111 8.75 0.00 0.00 3.82
412 4389 1.369209 GCGCATCACACACACACAC 60.369 57.895 0.30 0.00 0.00 3.82
414 4391 0.316114 CGCATCACACACACACACAC 60.316 55.000 0.00 0.00 0.00 3.82
417 4394 2.278854 CATCACACACACACACACAGA 58.721 47.619 0.00 0.00 0.00 3.41
418 4395 1.720805 TCACACACACACACACAGAC 58.279 50.000 0.00 0.00 0.00 3.51
419 4396 1.001406 TCACACACACACACACAGACA 59.999 47.619 0.00 0.00 0.00 3.41
420 4397 1.128507 CACACACACACACACAGACAC 59.871 52.381 0.00 0.00 0.00 3.67
421 4398 1.270571 ACACACACACACACAGACACA 60.271 47.619 0.00 0.00 0.00 3.72
422 4399 1.128507 CACACACACACACAGACACAC 59.871 52.381 0.00 0.00 0.00 3.82
423 4400 1.270571 ACACACACACACAGACACACA 60.271 47.619 0.00 0.00 0.00 3.72
424 4401 1.128507 CACACACACACAGACACACAC 59.871 52.381 0.00 0.00 0.00 3.82
425 4402 1.270571 ACACACACACAGACACACACA 60.271 47.619 0.00 0.00 0.00 3.72
426 4403 1.803555 CACACACACAGACACACACAA 59.196 47.619 0.00 0.00 0.00 3.33
427 4404 2.225255 CACACACACAGACACACACAAA 59.775 45.455 0.00 0.00 0.00 2.83
428 4405 2.483877 ACACACACAGACACACACAAAG 59.516 45.455 0.00 0.00 0.00 2.77
429 4406 1.468520 ACACACAGACACACACAAAGC 59.531 47.619 0.00 0.00 0.00 3.51
437 4414 2.158559 ACACACACAAAGCAGAACACA 58.841 42.857 0.00 0.00 0.00 3.72
440 4417 2.556189 ACACACAAAGCAGAACACACAA 59.444 40.909 0.00 0.00 0.00 3.33
444 4421 2.362077 ACAAAGCAGAACACACAATCCC 59.638 45.455 0.00 0.00 0.00 3.85
453 4430 0.667993 CACACAATCCCCACACACAC 59.332 55.000 0.00 0.00 0.00 3.82
466 4443 3.426963 CCACACACACACGTTAGCTTTTT 60.427 43.478 0.00 0.00 0.00 1.94
504 4481 0.173708 ACGTTAGCTAGCTGAGGCAC 59.826 55.000 27.68 13.72 41.70 5.01
554 6053 0.466189 CACACTTCAACCCACTGGCT 60.466 55.000 0.00 0.00 33.59 4.75
556 6055 1.072331 ACACTTCAACCCACTGGCTAG 59.928 52.381 0.00 0.00 33.59 3.42
564 6063 1.524621 CCACTGGCTAGCCGGAATG 60.525 63.158 42.69 31.29 45.10 2.67
565 6064 1.522092 CACTGGCTAGCCGGAATGA 59.478 57.895 42.69 18.56 45.10 2.57
634 6164 2.845019 TGCCAACGCAGAGAATCAG 58.155 52.632 0.00 0.00 41.12 2.90
635 6165 0.321346 TGCCAACGCAGAGAATCAGA 59.679 50.000 0.00 0.00 41.12 3.27
636 6166 0.723981 GCCAACGCAGAGAATCAGAC 59.276 55.000 0.00 0.00 37.82 3.51
637 6167 1.674221 GCCAACGCAGAGAATCAGACT 60.674 52.381 0.00 0.00 37.82 3.24
638 6168 1.998315 CCAACGCAGAGAATCAGACTG 59.002 52.381 0.00 0.00 37.82 3.51
639 6169 2.353109 CCAACGCAGAGAATCAGACTGA 60.353 50.000 7.80 7.80 37.82 3.41
640 6170 3.519579 CAACGCAGAGAATCAGACTGAT 58.480 45.455 12.37 12.37 39.09 2.90
641 6171 4.440663 CCAACGCAGAGAATCAGACTGATA 60.441 45.833 18.24 0.00 35.76 2.15
643 6173 3.951037 ACGCAGAGAATCAGACTGATAGT 59.049 43.478 18.24 8.62 35.76 2.12
644 6174 5.126779 ACGCAGAGAATCAGACTGATAGTA 58.873 41.667 18.24 0.00 35.76 1.82
645 6175 5.238432 ACGCAGAGAATCAGACTGATAGTAG 59.762 44.000 18.24 8.92 35.76 2.57
646 6176 5.468409 CGCAGAGAATCAGACTGATAGTAGA 59.532 44.000 18.24 0.00 35.76 2.59
647 6177 6.017523 CGCAGAGAATCAGACTGATAGTAGAA 60.018 42.308 18.24 0.00 35.76 2.10
648 6178 7.308529 CGCAGAGAATCAGACTGATAGTAGAAT 60.309 40.741 18.24 0.74 35.76 2.40
649 6179 8.359642 GCAGAGAATCAGACTGATAGTAGAATT 58.640 37.037 18.24 0.86 35.76 2.17
650 6180 9.897744 CAGAGAATCAGACTGATAGTAGAATTC 57.102 37.037 18.24 10.16 35.76 2.17
651 6181 9.866655 AGAGAATCAGACTGATAGTAGAATTCT 57.133 33.333 18.24 13.56 35.76 2.40
653 6183 9.639563 AGAATCAGACTGATAGTAGAATTCTCA 57.360 33.333 18.24 2.62 35.76 3.27
799 6332 2.548920 CCTTCGATTAGACCCATCTGCC 60.549 54.545 0.00 0.00 36.29 4.85
1232 6782 2.909006 TCCAAAACTCTCTCCTCATGCT 59.091 45.455 0.00 0.00 0.00 3.79
1269 6820 0.179056 CCGCTGATTATGTCGGGGTT 60.179 55.000 0.00 0.00 42.88 4.11
1270 6821 1.663695 CGCTGATTATGTCGGGGTTT 58.336 50.000 0.00 0.00 40.34 3.27
1271 6822 1.597663 CGCTGATTATGTCGGGGTTTC 59.402 52.381 0.00 0.00 40.34 2.78
1272 6823 2.741878 CGCTGATTATGTCGGGGTTTCT 60.742 50.000 0.00 0.00 40.34 2.52
1273 6824 3.279434 GCTGATTATGTCGGGGTTTCTT 58.721 45.455 0.00 0.00 33.56 2.52
1274 6825 3.065371 GCTGATTATGTCGGGGTTTCTTG 59.935 47.826 0.00 0.00 33.56 3.02
1275 6826 4.513442 CTGATTATGTCGGGGTTTCTTGA 58.487 43.478 0.00 0.00 0.00 3.02
1276 6827 4.258543 TGATTATGTCGGGGTTTCTTGAC 58.741 43.478 0.00 0.00 0.00 3.18
1505 7068 3.132646 CACCTCTTCTCTGATCCTCTTGG 59.867 52.174 0.00 0.00 0.00 3.61
1559 7125 4.869215 TGTGGCATAATTGACAAGTGTTG 58.131 39.130 0.00 0.00 44.33 3.33
1744 7310 2.660236 CGTACGAGTTTCCTTCCTTTCG 59.340 50.000 10.44 0.00 0.00 3.46
1747 7313 3.586892 ACGAGTTTCCTTCCTTTCGATC 58.413 45.455 0.00 0.00 32.81 3.69
1754 7320 6.717084 AGTTTCCTTCCTTTCGATCTTCAATT 59.283 34.615 0.00 0.00 0.00 2.32
1755 7321 6.500684 TTCCTTCCTTTCGATCTTCAATTG 57.499 37.500 0.00 0.00 0.00 2.32
1756 7322 4.943705 TCCTTCCTTTCGATCTTCAATTGG 59.056 41.667 5.42 0.00 0.00 3.16
1757 7323 4.702131 CCTTCCTTTCGATCTTCAATTGGT 59.298 41.667 5.42 0.00 0.00 3.67
1758 7324 5.392380 CCTTCCTTTCGATCTTCAATTGGTG 60.392 44.000 5.42 0.00 0.00 4.17
1759 7325 4.009675 TCCTTTCGATCTTCAATTGGTGG 58.990 43.478 5.42 0.00 0.00 4.61
1760 7326 3.758554 CCTTTCGATCTTCAATTGGTGGT 59.241 43.478 5.42 0.00 0.00 4.16
1761 7327 4.941263 CCTTTCGATCTTCAATTGGTGGTA 59.059 41.667 5.42 0.00 0.00 3.25
1762 7328 5.065218 CCTTTCGATCTTCAATTGGTGGTAG 59.935 44.000 5.42 0.00 0.00 3.18
1763 7329 4.819105 TCGATCTTCAATTGGTGGTAGT 57.181 40.909 5.42 0.00 0.00 2.73
1764 7330 4.503910 TCGATCTTCAATTGGTGGTAGTG 58.496 43.478 5.42 0.00 0.00 2.74
1765 7331 3.063997 CGATCTTCAATTGGTGGTAGTGC 59.936 47.826 5.42 0.00 0.00 4.40
1766 7332 3.788227 TCTTCAATTGGTGGTAGTGCT 57.212 42.857 5.42 0.00 0.00 4.40
1767 7333 3.411446 TCTTCAATTGGTGGTAGTGCTG 58.589 45.455 5.42 0.00 0.00 4.41
1768 7334 1.533625 TCAATTGGTGGTAGTGCTGC 58.466 50.000 5.42 0.00 0.00 5.25
1769 7335 1.073763 TCAATTGGTGGTAGTGCTGCT 59.926 47.619 5.42 0.00 0.00 4.24
1770 7336 1.888512 CAATTGGTGGTAGTGCTGCTT 59.111 47.619 0.00 0.00 0.00 3.91
1771 7337 3.081061 CAATTGGTGGTAGTGCTGCTTA 58.919 45.455 0.00 0.00 0.00 3.09
1772 7338 2.940994 TTGGTGGTAGTGCTGCTTAA 57.059 45.000 0.00 0.00 0.00 1.85
1773 7339 3.433306 TTGGTGGTAGTGCTGCTTAAT 57.567 42.857 0.00 0.00 0.00 1.40
1774 7340 2.985896 TGGTGGTAGTGCTGCTTAATC 58.014 47.619 0.00 0.00 0.00 1.75
1775 7341 2.571653 TGGTGGTAGTGCTGCTTAATCT 59.428 45.455 0.00 0.00 0.00 2.40
1776 7342 3.009033 TGGTGGTAGTGCTGCTTAATCTT 59.991 43.478 0.00 0.00 0.00 2.40
1777 7343 3.623510 GGTGGTAGTGCTGCTTAATCTTC 59.376 47.826 0.00 0.00 0.00 2.87
1778 7344 4.508662 GTGGTAGTGCTGCTTAATCTTCT 58.491 43.478 0.00 0.00 0.00 2.85
1779 7345 4.568760 GTGGTAGTGCTGCTTAATCTTCTC 59.431 45.833 0.00 0.00 0.00 2.87
1780 7346 4.467795 TGGTAGTGCTGCTTAATCTTCTCT 59.532 41.667 0.00 0.00 0.00 3.10
1781 7347 5.047188 GGTAGTGCTGCTTAATCTTCTCTC 58.953 45.833 0.00 0.00 0.00 3.20
1782 7348 3.779759 AGTGCTGCTTAATCTTCTCTCG 58.220 45.455 0.00 0.00 0.00 4.04
1783 7349 2.863137 GTGCTGCTTAATCTTCTCTCGG 59.137 50.000 0.00 0.00 0.00 4.63
1784 7350 2.760650 TGCTGCTTAATCTTCTCTCGGA 59.239 45.455 0.00 0.00 0.00 4.55
1785 7351 3.120041 GCTGCTTAATCTTCTCTCGGAC 58.880 50.000 0.00 0.00 0.00 4.79
1786 7352 3.367607 CTGCTTAATCTTCTCTCGGACG 58.632 50.000 0.00 0.00 0.00 4.79
1787 7353 2.753452 TGCTTAATCTTCTCTCGGACGT 59.247 45.455 0.00 0.00 0.00 4.34
1788 7354 3.192844 TGCTTAATCTTCTCTCGGACGTT 59.807 43.478 0.00 0.00 0.00 3.99
1789 7355 4.174762 GCTTAATCTTCTCTCGGACGTTT 58.825 43.478 0.00 0.00 0.00 3.60
1790 7356 4.031878 GCTTAATCTTCTCTCGGACGTTTG 59.968 45.833 0.00 0.00 0.00 2.93
1791 7357 1.997669 ATCTTCTCTCGGACGTTTGC 58.002 50.000 0.00 0.00 0.00 3.68
1792 7358 0.959553 TCTTCTCTCGGACGTTTGCT 59.040 50.000 0.00 0.00 0.00 3.91
1793 7359 1.063806 CTTCTCTCGGACGTTTGCTG 58.936 55.000 0.00 0.00 0.00 4.41
1794 7360 0.671796 TTCTCTCGGACGTTTGCTGA 59.328 50.000 0.00 0.00 0.00 4.26
1795 7361 0.888619 TCTCTCGGACGTTTGCTGAT 59.111 50.000 0.00 0.00 0.00 2.90
1796 7362 1.272490 TCTCTCGGACGTTTGCTGATT 59.728 47.619 0.00 0.00 0.00 2.57
1797 7363 1.391485 CTCTCGGACGTTTGCTGATTG 59.609 52.381 0.00 0.00 0.00 2.67
1798 7364 0.443869 CTCGGACGTTTGCTGATTGG 59.556 55.000 0.00 0.00 0.00 3.16
1799 7365 0.034198 TCGGACGTTTGCTGATTGGA 59.966 50.000 0.00 0.00 0.00 3.53
1800 7366 0.871722 CGGACGTTTGCTGATTGGAA 59.128 50.000 0.00 0.00 0.00 3.53
1801 7367 1.468520 CGGACGTTTGCTGATTGGAAT 59.531 47.619 0.00 0.00 0.00 3.01
1802 7368 2.728846 CGGACGTTTGCTGATTGGAATG 60.729 50.000 0.00 0.00 0.00 2.67
1803 7369 2.487762 GGACGTTTGCTGATTGGAATGA 59.512 45.455 0.00 0.00 0.00 2.57
1804 7370 3.129287 GGACGTTTGCTGATTGGAATGAT 59.871 43.478 0.00 0.00 0.00 2.45
1805 7371 4.380867 GGACGTTTGCTGATTGGAATGATT 60.381 41.667 0.00 0.00 0.00 2.57
1806 7372 5.138125 ACGTTTGCTGATTGGAATGATTT 57.862 34.783 0.00 0.00 0.00 2.17
1807 7373 4.925054 ACGTTTGCTGATTGGAATGATTTG 59.075 37.500 0.00 0.00 0.00 2.32
1808 7374 4.925054 CGTTTGCTGATTGGAATGATTTGT 59.075 37.500 0.00 0.00 0.00 2.83
1809 7375 5.061311 CGTTTGCTGATTGGAATGATTTGTC 59.939 40.000 0.00 0.00 0.00 3.18
1810 7376 4.359971 TGCTGATTGGAATGATTTGTCG 57.640 40.909 0.00 0.00 0.00 4.35
1811 7377 3.129113 TGCTGATTGGAATGATTTGTCGG 59.871 43.478 0.00 0.00 0.00 4.79
1812 7378 3.699067 CTGATTGGAATGATTTGTCGGC 58.301 45.455 0.00 0.00 0.00 5.54
1813 7379 2.426738 TGATTGGAATGATTTGTCGGCC 59.573 45.455 0.00 0.00 0.00 6.13
1814 7380 0.808125 TTGGAATGATTTGTCGGCCG 59.192 50.000 22.12 22.12 0.00 6.13
1815 7381 1.029408 TGGAATGATTTGTCGGCCGG 61.029 55.000 27.83 6.80 0.00 6.13
1816 7382 1.029947 GGAATGATTTGTCGGCCGGT 61.030 55.000 27.83 6.45 0.00 5.28
1817 7383 0.808755 GAATGATTTGTCGGCCGGTT 59.191 50.000 27.83 5.55 0.00 4.44
1818 7384 0.808755 AATGATTTGTCGGCCGGTTC 59.191 50.000 27.83 16.50 0.00 3.62
1819 7385 1.366111 ATGATTTGTCGGCCGGTTCG 61.366 55.000 27.83 8.27 0.00 3.95
1820 7386 2.030958 GATTTGTCGGCCGGTTCGT 61.031 57.895 27.83 9.29 0.00 3.85
1821 7387 1.571215 GATTTGTCGGCCGGTTCGTT 61.571 55.000 27.83 6.18 0.00 3.85
1822 7388 0.320596 ATTTGTCGGCCGGTTCGTTA 60.321 50.000 27.83 0.00 0.00 3.18
1823 7389 0.320596 TTTGTCGGCCGGTTCGTTAT 60.321 50.000 27.83 0.00 0.00 1.89
1835 7401 4.800471 CCGGTTCGTTATTGGTAGTTAGTC 59.200 45.833 0.00 0.00 0.00 2.59
1872 7438 2.481212 TCCGCATGGATTGTCAAGC 58.519 52.632 0.00 0.00 40.17 4.01
1873 7439 0.322366 TCCGCATGGATTGTCAAGCA 60.322 50.000 2.81 0.00 40.17 3.91
1874 7440 0.742505 CCGCATGGATTGTCAAGCAT 59.257 50.000 2.81 0.00 37.49 3.79
1875 7441 1.535226 CCGCATGGATTGTCAAGCATG 60.535 52.381 2.81 6.12 37.49 4.06
1876 7442 1.133598 CGCATGGATTGTCAAGCATGT 59.866 47.619 2.81 0.00 31.65 3.21
1877 7443 2.536365 GCATGGATTGTCAAGCATGTG 58.464 47.619 2.81 0.00 32.36 3.21
1878 7444 2.094390 GCATGGATTGTCAAGCATGTGT 60.094 45.455 2.81 0.00 32.36 3.72
1879 7445 3.507786 CATGGATTGTCAAGCATGTGTG 58.492 45.455 2.81 0.00 0.00 3.82
1880 7446 2.861274 TGGATTGTCAAGCATGTGTGA 58.139 42.857 2.81 0.00 0.00 3.58
1881 7447 3.220940 TGGATTGTCAAGCATGTGTGAA 58.779 40.909 2.81 0.00 0.00 3.18
1882 7448 3.635836 TGGATTGTCAAGCATGTGTGAAA 59.364 39.130 2.81 0.00 0.00 2.69
1884 7450 4.860907 GGATTGTCAAGCATGTGTGAAATC 59.139 41.667 2.81 16.40 0.00 2.17
1885 7451 4.915158 TTGTCAAGCATGTGTGAAATCA 57.085 36.364 0.00 0.00 0.00 2.57
1887 7453 3.240069 GTCAAGCATGTGTGAAATCAGC 58.760 45.455 0.00 0.00 0.00 4.26
1888 7454 2.885894 TCAAGCATGTGTGAAATCAGCA 59.114 40.909 0.00 0.00 0.00 4.41
1889 7455 3.508402 TCAAGCATGTGTGAAATCAGCAT 59.492 39.130 0.00 0.00 0.00 3.79
1890 7456 3.777465 AGCATGTGTGAAATCAGCATC 57.223 42.857 0.00 0.00 0.00 3.91
1892 7458 4.520179 AGCATGTGTGAAATCAGCATCTA 58.480 39.130 0.00 0.00 0.00 1.98
1893 7459 4.334759 AGCATGTGTGAAATCAGCATCTAC 59.665 41.667 0.00 0.00 0.00 2.59
1894 7460 4.334759 GCATGTGTGAAATCAGCATCTACT 59.665 41.667 0.00 0.00 0.00 2.57
1895 7461 5.163683 GCATGTGTGAAATCAGCATCTACTT 60.164 40.000 0.00 0.00 0.00 2.24
1896 7462 6.484540 CATGTGTGAAATCAGCATCTACTTC 58.515 40.000 0.00 0.00 0.00 3.01
1897 7463 5.798132 TGTGTGAAATCAGCATCTACTTCT 58.202 37.500 0.00 0.00 0.00 2.85
1898 7464 6.233434 TGTGTGAAATCAGCATCTACTTCTT 58.767 36.000 0.00 0.00 0.00 2.52
1899 7465 6.369890 TGTGTGAAATCAGCATCTACTTCTTC 59.630 38.462 0.00 0.00 0.00 2.87
1900 7466 6.369890 GTGTGAAATCAGCATCTACTTCTTCA 59.630 38.462 0.00 0.00 0.00 3.02
1901 7467 7.065563 GTGTGAAATCAGCATCTACTTCTTCAT 59.934 37.037 0.00 0.00 0.00 2.57
1902 7468 7.065443 TGTGAAATCAGCATCTACTTCTTCATG 59.935 37.037 0.00 0.00 0.00 3.07
1903 7469 7.279536 GTGAAATCAGCATCTACTTCTTCATGA 59.720 37.037 0.00 0.00 0.00 3.07
1904 7470 7.825761 TGAAATCAGCATCTACTTCTTCATGAA 59.174 33.333 8.12 8.12 0.00 2.57
1905 7471 7.551035 AATCAGCATCTACTTCTTCATGAAC 57.449 36.000 3.38 0.00 0.00 3.18
1906 7472 6.291648 TCAGCATCTACTTCTTCATGAACT 57.708 37.500 3.38 0.00 0.00 3.01
1907 7473 6.336566 TCAGCATCTACTTCTTCATGAACTC 58.663 40.000 3.38 0.00 0.00 3.01
1908 7474 6.154192 TCAGCATCTACTTCTTCATGAACTCT 59.846 38.462 3.38 0.00 0.00 3.24
1909 7475 6.256104 CAGCATCTACTTCTTCATGAACTCTG 59.744 42.308 3.38 0.00 0.00 3.35
1910 7476 6.154192 AGCATCTACTTCTTCATGAACTCTGA 59.846 38.462 3.38 0.00 0.00 3.27
1911 7477 6.815641 GCATCTACTTCTTCATGAACTCTGAA 59.184 38.462 3.38 5.91 0.00 3.02
1913 7479 7.531857 TCTACTTCTTCATGAACTCTGAAGT 57.468 36.000 28.96 28.96 46.27 3.01
1914 7480 7.374272 TCTACTTCTTCATGAACTCTGAAGTG 58.626 38.462 31.38 24.61 46.27 3.16
1915 7481 4.754114 ACTTCTTCATGAACTCTGAAGTGC 59.246 41.667 27.16 0.00 46.27 4.40
1916 7482 4.613925 TCTTCATGAACTCTGAAGTGCT 57.386 40.909 3.38 0.00 46.27 4.40
1917 7483 4.313282 TCTTCATGAACTCTGAAGTGCTG 58.687 43.478 3.38 0.00 46.27 4.41
1918 7484 4.039609 TCTTCATGAACTCTGAAGTGCTGA 59.960 41.667 3.38 0.00 46.27 4.26
1919 7485 4.341366 TCATGAACTCTGAAGTGCTGAA 57.659 40.909 0.00 0.00 35.36 3.02
1920 7486 4.903054 TCATGAACTCTGAAGTGCTGAAT 58.097 39.130 0.00 0.00 35.36 2.57
1921 7487 6.041423 TCATGAACTCTGAAGTGCTGAATA 57.959 37.500 0.00 0.00 35.36 1.75
1922 7488 5.871524 TCATGAACTCTGAAGTGCTGAATAC 59.128 40.000 0.00 0.00 35.36 1.89
1923 7489 5.474578 TGAACTCTGAAGTGCTGAATACT 57.525 39.130 0.00 0.00 35.36 2.12
1924 7490 5.858381 TGAACTCTGAAGTGCTGAATACTT 58.142 37.500 0.00 0.00 40.84 2.24
1925 7491 5.698089 TGAACTCTGAAGTGCTGAATACTTG 59.302 40.000 0.00 0.00 38.42 3.16
1926 7492 5.220710 ACTCTGAAGTGCTGAATACTTGT 57.779 39.130 0.00 0.00 38.42 3.16
1927 7493 5.233988 ACTCTGAAGTGCTGAATACTTGTC 58.766 41.667 0.00 0.00 38.42 3.18
1928 7494 5.213891 TCTGAAGTGCTGAATACTTGTCA 57.786 39.130 0.00 0.00 38.42 3.58
1929 7495 5.610398 TCTGAAGTGCTGAATACTTGTCAA 58.390 37.500 0.00 0.00 38.42 3.18
1930 7496 5.698089 TCTGAAGTGCTGAATACTTGTCAAG 59.302 40.000 11.17 11.17 38.42 3.02
1997 7566 9.243637 TCAAGCATGTTGTTTTATTTTAGTGAC 57.756 29.630 0.00 0.00 0.00 3.67
2087 7658 6.183361 TGTGTAGGTTGAATTGGTCCTTAAGA 60.183 38.462 3.36 0.00 0.00 2.10
2091 7662 5.185828 AGGTTGAATTGGTCCTTAAGATTGC 59.814 40.000 3.36 0.00 0.00 3.56
2092 7663 5.410924 GTTGAATTGGTCCTTAAGATTGCC 58.589 41.667 3.36 1.17 0.00 4.52
2165 7744 3.199071 TGCCGTGTAATATCTCCCTTGTT 59.801 43.478 0.00 0.00 0.00 2.83
2188 7767 2.514803 AGGGGTTTGTATGCAGTGAAC 58.485 47.619 0.00 0.00 0.00 3.18
2204 7783 3.324846 AGTGAACTGTTCATGCTAGTGGA 59.675 43.478 24.44 0.00 42.47 4.02
2205 7784 3.433615 GTGAACTGTTCATGCTAGTGGAC 59.566 47.826 24.44 5.73 42.47 4.02
2206 7785 3.070878 TGAACTGTTCATGCTAGTGGACA 59.929 43.478 18.69 0.00 35.26 4.02
2208 7787 3.325293 CTGTTCATGCTAGTGGACAGT 57.675 47.619 11.88 0.00 46.25 3.55
2209 7788 2.998670 CTGTTCATGCTAGTGGACAGTG 59.001 50.000 11.88 0.00 46.25 3.66
2210 7789 2.289631 TGTTCATGCTAGTGGACAGTGG 60.290 50.000 0.00 0.00 32.72 4.00
2214 7793 0.392706 TGCTAGTGGACAGTGGTGTG 59.607 55.000 0.00 0.00 36.88 3.82
2217 7796 1.070758 CTAGTGGACAGTGGTGTGCTT 59.929 52.381 0.00 0.00 45.01 3.91
2225 7804 0.255890 AGTGGTGTGCTTGTGTTCCT 59.744 50.000 0.00 0.00 0.00 3.36
2236 8080 0.923358 TGTGTTCCTTGACAGGGGTT 59.077 50.000 3.41 0.00 41.25 4.11
2238 8082 2.158726 TGTGTTCCTTGACAGGGGTTAC 60.159 50.000 3.41 1.56 41.25 2.50
2239 8083 1.422402 TGTTCCTTGACAGGGGTTACC 59.578 52.381 3.41 0.00 41.25 2.85
2241 8085 1.822425 TCCTTGACAGGGGTTACCAA 58.178 50.000 2.98 0.00 43.89 3.67
2242 8086 2.136863 TCCTTGACAGGGGTTACCAAA 58.863 47.619 2.98 0.00 43.89 3.28
2243 8087 2.514582 TCCTTGACAGGGGTTACCAAAA 59.485 45.455 2.98 0.00 43.89 2.44
2244 8088 3.052793 TCCTTGACAGGGGTTACCAAAAA 60.053 43.478 2.98 0.00 43.89 1.94
2254 8098 3.131400 GGGTTACCAAAAACAAGCAGTCA 59.869 43.478 2.98 0.00 36.50 3.41
2606 10698 4.660303 TGTGATTTCTACCATCTGGCCTAT 59.340 41.667 3.32 0.00 39.32 2.57
2921 13682 2.091541 ACATGGCCGTATGGTTTCTTG 58.908 47.619 0.00 4.59 37.67 3.02
2925 13686 0.733150 GCCGTATGGTTTCTTGCTCC 59.267 55.000 2.17 0.00 37.67 4.70
2950 13711 1.546476 ACTTTGACCGCCTAGAGTGAG 59.454 52.381 0.00 0.00 0.00 3.51
3064 13853 6.970043 CGTAGAAGATTCTGTTAAGAGACCAG 59.030 42.308 1.00 0.00 38.19 4.00
3312 14138 3.244181 GCAATCCAAATTGTTGTCCACCT 60.244 43.478 0.00 0.00 43.54 4.00
3313 14139 4.021544 GCAATCCAAATTGTTGTCCACCTA 60.022 41.667 0.00 0.00 43.54 3.08
3314 14140 5.713025 CAATCCAAATTGTTGTCCACCTAG 58.287 41.667 0.00 0.00 37.97 3.02
3315 14141 4.447138 TCCAAATTGTTGTCCACCTAGT 57.553 40.909 0.00 0.00 32.40 2.57
3316 14142 5.570205 TCCAAATTGTTGTCCACCTAGTA 57.430 39.130 0.00 0.00 32.40 1.82
3317 14143 5.556915 TCCAAATTGTTGTCCACCTAGTAG 58.443 41.667 0.00 0.00 32.40 2.57
3352 14209 1.748122 CTGCTCATCACCAGGTGCC 60.748 63.158 15.64 1.32 32.98 5.01
3359 14216 0.983378 ATCACCAGGTGCCCCTACTC 60.983 60.000 15.64 0.00 39.89 2.59
3390 14248 3.317711 TGTCTGCCATGTACTGTTTTTGG 59.682 43.478 0.00 0.00 0.00 3.28
3443 14304 2.945668 GACTCTTACCCATGCAATCCAC 59.054 50.000 0.00 0.00 0.00 4.02
3451 14312 3.716353 ACCCATGCAATCCACATCTACTA 59.284 43.478 0.00 0.00 0.00 1.82
3466 14429 9.319143 CCACATCTACTAAAGTATCTTTGAAGG 57.681 37.037 5.19 0.00 0.00 3.46
3504 14467 8.306761 GGAATTGTGGAGAACTTTGTATTTGAT 58.693 33.333 0.00 0.00 0.00 2.57
3584 14547 2.444895 GCCGGATGGGGAGAGAGT 60.445 66.667 5.05 0.00 35.78 3.24
3589 14554 0.105453 GGATGGGGAGAGAGTAGGCA 60.105 60.000 0.00 0.00 0.00 4.75
3593 14558 1.078823 TGGGGAGAGAGTAGGCAAAGA 59.921 52.381 0.00 0.00 0.00 2.52
3658 14624 3.375299 GGAAGATCCACAACTGATTTCGG 59.625 47.826 0.00 0.00 36.28 4.30
3721 14693 7.845622 GCCAATAATTTTCACATTTGAATACGC 59.154 33.333 0.00 0.00 41.50 4.42
3735 14707 6.905544 TTGAATACGCGATAATACAAACCA 57.094 33.333 15.93 0.00 0.00 3.67
3737 14709 4.985044 ATACGCGATAATACAAACCAGC 57.015 40.909 15.93 0.00 0.00 4.85
3778 14750 7.280876 GTCCATGCAACTTATGTTAGAATCTGA 59.719 37.037 0.00 0.00 34.60 3.27
3819 14795 7.865706 TTTAAAGCTTCACAAGTTTCTCTCT 57.134 32.000 0.00 0.00 30.19 3.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
105 4077 5.299279 TGAGAGGCGATTATTTTCCAATTCC 59.701 40.000 0.00 0.00 0.00 3.01
107 4079 6.774656 AGATGAGAGGCGATTATTTTCCAATT 59.225 34.615 0.00 0.00 0.00 2.32
108 4080 6.302269 AGATGAGAGGCGATTATTTTCCAAT 58.698 36.000 0.00 0.00 0.00 3.16
139 4111 4.701651 ATAGATCGGAAGTTTTACCCCC 57.298 45.455 0.00 0.00 0.00 5.40
140 4112 5.677567 TGAATAGATCGGAAGTTTTACCCC 58.322 41.667 0.00 0.00 0.00 4.95
141 4113 7.217906 AGATGAATAGATCGGAAGTTTTACCC 58.782 38.462 0.00 0.00 0.00 3.69
152 4126 5.410746 CCATGGTTGAAGATGAATAGATCGG 59.589 44.000 2.57 0.00 0.00 4.18
154 4128 8.153550 ACTACCATGGTTGAAGATGAATAGATC 58.846 37.037 29.56 0.00 0.00 2.75
171 4145 4.445452 AGTGTACGTTGTACTACCATGG 57.555 45.455 11.19 11.19 0.00 3.66
213 4187 2.613133 GTCGCTAGATTCTACAGACCGT 59.387 50.000 0.00 0.00 0.00 4.83
215 4189 2.871022 TCGTCGCTAGATTCTACAGACC 59.129 50.000 13.74 3.03 0.00 3.85
217 4191 3.794717 AGTCGTCGCTAGATTCTACAGA 58.205 45.455 0.00 0.00 0.00 3.41
220 4194 5.401033 TTGTAGTCGTCGCTAGATTCTAC 57.599 43.478 0.00 0.00 32.69 2.59
221 4195 4.025061 GCTTGTAGTCGTCGCTAGATTCTA 60.025 45.833 0.00 0.00 0.00 2.10
222 4196 3.242804 GCTTGTAGTCGTCGCTAGATTCT 60.243 47.826 0.00 0.00 0.00 2.40
223 4197 3.037324 GCTTGTAGTCGTCGCTAGATTC 58.963 50.000 0.00 0.00 0.00 2.52
224 4198 2.422479 TGCTTGTAGTCGTCGCTAGATT 59.578 45.455 0.00 0.00 0.00 2.40
226 4200 1.129998 GTGCTTGTAGTCGTCGCTAGA 59.870 52.381 0.00 0.00 0.00 2.43
268 4245 0.268869 AGGGAGGGGTGATGATAGCA 59.731 55.000 0.00 0.00 0.00 3.49
291 4268 2.197324 AAGTTTTGCCCGGCTCCA 59.803 55.556 11.61 0.00 0.00 3.86
309 4286 5.474189 AGACTTCCTGACTGTCTACTACAAC 59.526 44.000 9.51 0.00 39.02 3.32
394 4371 1.369209 GTGTGTGTGTGTGATGCGC 60.369 57.895 0.00 0.00 0.00 6.09
396 4373 0.731994 TGTGTGTGTGTGTGTGATGC 59.268 50.000 0.00 0.00 0.00 3.91
408 4385 2.728846 GCTTTGTGTGTGTCTGTGTGTG 60.729 50.000 0.00 0.00 0.00 3.82
410 4387 1.468127 TGCTTTGTGTGTGTCTGTGTG 59.532 47.619 0.00 0.00 0.00 3.82
412 4389 2.009051 TCTGCTTTGTGTGTGTCTGTG 58.991 47.619 0.00 0.00 0.00 3.66
414 4391 2.419673 TGTTCTGCTTTGTGTGTGTCTG 59.580 45.455 0.00 0.00 0.00 3.51
417 4394 2.095263 GTGTGTTCTGCTTTGTGTGTGT 60.095 45.455 0.00 0.00 0.00 3.72
418 4395 2.095314 TGTGTGTTCTGCTTTGTGTGTG 60.095 45.455 0.00 0.00 0.00 3.82
419 4396 2.158559 TGTGTGTTCTGCTTTGTGTGT 58.841 42.857 0.00 0.00 0.00 3.72
420 4397 2.917701 TGTGTGTTCTGCTTTGTGTG 57.082 45.000 0.00 0.00 0.00 3.82
421 4398 3.181487 GGATTGTGTGTTCTGCTTTGTGT 60.181 43.478 0.00 0.00 0.00 3.72
422 4399 3.374745 GGATTGTGTGTTCTGCTTTGTG 58.625 45.455 0.00 0.00 0.00 3.33
423 4400 2.362077 GGGATTGTGTGTTCTGCTTTGT 59.638 45.455 0.00 0.00 0.00 2.83
424 4401 2.288395 GGGGATTGTGTGTTCTGCTTTG 60.288 50.000 0.00 0.00 0.00 2.77
425 4402 1.963515 GGGGATTGTGTGTTCTGCTTT 59.036 47.619 0.00 0.00 0.00 3.51
426 4403 1.133513 TGGGGATTGTGTGTTCTGCTT 60.134 47.619 0.00 0.00 0.00 3.91
427 4404 0.478072 TGGGGATTGTGTGTTCTGCT 59.522 50.000 0.00 0.00 0.00 4.24
428 4405 0.598065 GTGGGGATTGTGTGTTCTGC 59.402 55.000 0.00 0.00 0.00 4.26
429 4406 1.608590 GTGTGGGGATTGTGTGTTCTG 59.391 52.381 0.00 0.00 0.00 3.02
437 4414 0.817634 CGTGTGTGTGTGGGGATTGT 60.818 55.000 0.00 0.00 0.00 2.71
440 4417 0.759959 TAACGTGTGTGTGTGGGGAT 59.240 50.000 0.00 0.00 0.00 3.85
444 4421 1.295792 AAGCTAACGTGTGTGTGTGG 58.704 50.000 0.00 0.00 0.00 4.17
469 4446 5.352016 AGCTAACGTGTGTGTTTGACTTAAA 59.648 36.000 0.00 0.00 33.32 1.52
470 4447 4.871557 AGCTAACGTGTGTGTTTGACTTAA 59.128 37.500 0.00 0.00 33.32 1.85
472 4449 3.267483 AGCTAACGTGTGTGTTTGACTT 58.733 40.909 0.00 0.00 33.32 3.01
473 4450 2.901249 AGCTAACGTGTGTGTTTGACT 58.099 42.857 0.00 0.00 33.32 3.41
474 4451 3.362693 GCTAGCTAACGTGTGTGTTTGAC 60.363 47.826 7.70 0.00 33.32 3.18
475 4452 2.798283 GCTAGCTAACGTGTGTGTTTGA 59.202 45.455 7.70 0.00 33.32 2.69
476 4453 2.800544 AGCTAGCTAACGTGTGTGTTTG 59.199 45.455 17.69 0.00 33.32 2.93
477 4454 2.800544 CAGCTAGCTAACGTGTGTGTTT 59.199 45.455 18.86 0.00 33.32 2.83
504 4481 1.575922 CCCTCAATGTGCGTGTGTG 59.424 57.895 0.00 0.00 0.00 3.82
554 6053 0.178068 GCAACCTCTCATTCCGGCTA 59.822 55.000 0.00 0.00 0.00 3.93
556 6055 2.464459 CGCAACCTCTCATTCCGGC 61.464 63.158 0.00 0.00 0.00 6.13
589 6088 2.356535 GGGCCTGAGAAATCATCACACT 60.357 50.000 0.84 0.00 0.00 3.55
817 6350 2.552585 TTCGTTCCTGGATCGACGGC 62.553 60.000 25.02 0.00 34.26 5.68
1251 6802 1.597663 GAAACCCCGACATAATCAGCG 59.402 52.381 0.00 0.00 0.00 5.18
1252 6803 2.919228 AGAAACCCCGACATAATCAGC 58.081 47.619 0.00 0.00 0.00 4.26
1253 6804 4.332819 GTCAAGAAACCCCGACATAATCAG 59.667 45.833 0.00 0.00 0.00 2.90
1269 6820 3.644966 ACCACCACAAGAAGTCAAGAA 57.355 42.857 0.00 0.00 0.00 2.52
1270 6821 3.054728 TGAACCACCACAAGAAGTCAAGA 60.055 43.478 0.00 0.00 0.00 3.02
1271 6822 3.278574 TGAACCACCACAAGAAGTCAAG 58.721 45.455 0.00 0.00 0.00 3.02
1272 6823 3.278574 CTGAACCACCACAAGAAGTCAA 58.721 45.455 0.00 0.00 0.00 3.18
1273 6824 2.421388 CCTGAACCACCACAAGAAGTCA 60.421 50.000 0.00 0.00 0.00 3.41
1274 6825 2.158813 TCCTGAACCACCACAAGAAGTC 60.159 50.000 0.00 0.00 0.00 3.01
1275 6826 1.843851 TCCTGAACCACCACAAGAAGT 59.156 47.619 0.00 0.00 0.00 3.01
1276 6827 2.222027 GTCCTGAACCACCACAAGAAG 58.778 52.381 0.00 0.00 0.00 2.85
1505 7068 4.246458 AGAGTTCACGCATTTCTAACTCC 58.754 43.478 9.28 0.00 44.50 3.85
1559 7125 1.732259 CAGATGGTAACCTGCAACGAC 59.268 52.381 0.00 0.00 0.00 4.34
1707 7273 2.096069 CGTACGAGTCAAAGACGAGGAA 60.096 50.000 10.44 0.00 37.67 3.36
1734 7300 4.702131 ACCAATTGAAGATCGAAAGGAAGG 59.298 41.667 7.12 0.00 0.00 3.46
1737 7303 4.009675 CCACCAATTGAAGATCGAAAGGA 58.990 43.478 7.12 0.00 0.00 3.36
1738 7304 3.758554 ACCACCAATTGAAGATCGAAAGG 59.241 43.478 7.12 0.00 0.00 3.11
1739 7305 5.643777 ACTACCACCAATTGAAGATCGAAAG 59.356 40.000 7.12 0.00 0.00 2.62
1744 7310 4.095483 CAGCACTACCACCAATTGAAGATC 59.905 45.833 7.12 0.00 0.00 2.75
1747 7313 2.095059 GCAGCACTACCACCAATTGAAG 60.095 50.000 7.12 0.00 0.00 3.02
1754 7320 2.571653 AGATTAAGCAGCACTACCACCA 59.428 45.455 0.00 0.00 0.00 4.17
1755 7321 3.268023 AGATTAAGCAGCACTACCACC 57.732 47.619 0.00 0.00 0.00 4.61
1756 7322 4.508662 AGAAGATTAAGCAGCACTACCAC 58.491 43.478 0.00 0.00 0.00 4.16
1757 7323 4.467795 AGAGAAGATTAAGCAGCACTACCA 59.532 41.667 0.00 0.00 0.00 3.25
1758 7324 5.017294 AGAGAAGATTAAGCAGCACTACC 57.983 43.478 0.00 0.00 0.00 3.18
1759 7325 4.737765 CGAGAGAAGATTAAGCAGCACTAC 59.262 45.833 0.00 0.00 0.00 2.73
1760 7326 4.202060 CCGAGAGAAGATTAAGCAGCACTA 60.202 45.833 0.00 0.00 0.00 2.74
1761 7327 3.430098 CCGAGAGAAGATTAAGCAGCACT 60.430 47.826 0.00 0.00 0.00 4.40
1762 7328 2.863137 CCGAGAGAAGATTAAGCAGCAC 59.137 50.000 0.00 0.00 0.00 4.40
1763 7329 2.760650 TCCGAGAGAAGATTAAGCAGCA 59.239 45.455 0.00 0.00 0.00 4.41
1764 7330 3.120041 GTCCGAGAGAAGATTAAGCAGC 58.880 50.000 0.00 0.00 0.00 5.25
1765 7331 3.181495 ACGTCCGAGAGAAGATTAAGCAG 60.181 47.826 0.00 0.00 0.00 4.24
1766 7332 2.753452 ACGTCCGAGAGAAGATTAAGCA 59.247 45.455 0.00 0.00 0.00 3.91
1767 7333 3.423996 ACGTCCGAGAGAAGATTAAGC 57.576 47.619 0.00 0.00 0.00 3.09
1768 7334 4.031878 GCAAACGTCCGAGAGAAGATTAAG 59.968 45.833 0.00 0.00 0.00 1.85
1769 7335 3.924686 GCAAACGTCCGAGAGAAGATTAA 59.075 43.478 0.00 0.00 0.00 1.40
1770 7336 3.192844 AGCAAACGTCCGAGAGAAGATTA 59.807 43.478 0.00 0.00 0.00 1.75
1771 7337 2.028930 AGCAAACGTCCGAGAGAAGATT 60.029 45.455 0.00 0.00 0.00 2.40
1772 7338 1.546476 AGCAAACGTCCGAGAGAAGAT 59.454 47.619 0.00 0.00 0.00 2.40
1773 7339 0.959553 AGCAAACGTCCGAGAGAAGA 59.040 50.000 0.00 0.00 0.00 2.87
1774 7340 1.063806 CAGCAAACGTCCGAGAGAAG 58.936 55.000 0.00 0.00 0.00 2.85
1775 7341 0.671796 TCAGCAAACGTCCGAGAGAA 59.328 50.000 0.00 0.00 0.00 2.87
1776 7342 0.888619 ATCAGCAAACGTCCGAGAGA 59.111 50.000 0.00 0.00 0.00 3.10
1777 7343 1.391485 CAATCAGCAAACGTCCGAGAG 59.609 52.381 0.00 0.00 0.00 3.20
1778 7344 1.428448 CAATCAGCAAACGTCCGAGA 58.572 50.000 0.00 0.00 0.00 4.04
1779 7345 0.443869 CCAATCAGCAAACGTCCGAG 59.556 55.000 0.00 0.00 0.00 4.63
1780 7346 0.034198 TCCAATCAGCAAACGTCCGA 59.966 50.000 0.00 0.00 0.00 4.55
1781 7347 0.871722 TTCCAATCAGCAAACGTCCG 59.128 50.000 0.00 0.00 0.00 4.79
1782 7348 2.487762 TCATTCCAATCAGCAAACGTCC 59.512 45.455 0.00 0.00 0.00 4.79
1783 7349 3.829886 TCATTCCAATCAGCAAACGTC 57.170 42.857 0.00 0.00 0.00 4.34
1784 7350 4.789012 AATCATTCCAATCAGCAAACGT 57.211 36.364 0.00 0.00 0.00 3.99
1785 7351 4.925054 ACAAATCATTCCAATCAGCAAACG 59.075 37.500 0.00 0.00 0.00 3.60
1786 7352 5.061311 CGACAAATCATTCCAATCAGCAAAC 59.939 40.000 0.00 0.00 0.00 2.93
1787 7353 5.162794 CGACAAATCATTCCAATCAGCAAA 58.837 37.500 0.00 0.00 0.00 3.68
1788 7354 4.380761 CCGACAAATCATTCCAATCAGCAA 60.381 41.667 0.00 0.00 0.00 3.91
1789 7355 3.129113 CCGACAAATCATTCCAATCAGCA 59.871 43.478 0.00 0.00 0.00 4.41
1790 7356 3.699067 CCGACAAATCATTCCAATCAGC 58.301 45.455 0.00 0.00 0.00 4.26
1791 7357 3.489738 GGCCGACAAATCATTCCAATCAG 60.490 47.826 0.00 0.00 0.00 2.90
1792 7358 2.426738 GGCCGACAAATCATTCCAATCA 59.573 45.455 0.00 0.00 0.00 2.57
1793 7359 2.541588 CGGCCGACAAATCATTCCAATC 60.542 50.000 24.07 0.00 0.00 2.67
1794 7360 1.405105 CGGCCGACAAATCATTCCAAT 59.595 47.619 24.07 0.00 0.00 3.16
1795 7361 0.808125 CGGCCGACAAATCATTCCAA 59.192 50.000 24.07 0.00 0.00 3.53
1796 7362 1.029408 CCGGCCGACAAATCATTCCA 61.029 55.000 30.73 0.00 0.00 3.53
1797 7363 1.029947 ACCGGCCGACAAATCATTCC 61.030 55.000 30.73 0.00 0.00 3.01
1798 7364 0.808755 AACCGGCCGACAAATCATTC 59.191 50.000 30.73 0.00 0.00 2.67
1799 7365 0.808755 GAACCGGCCGACAAATCATT 59.191 50.000 30.73 7.14 0.00 2.57
1800 7366 1.366111 CGAACCGGCCGACAAATCAT 61.366 55.000 30.73 2.38 0.00 2.45
1801 7367 2.030401 CGAACCGGCCGACAAATCA 61.030 57.895 30.73 0.00 0.00 2.57
1802 7368 1.571215 AACGAACCGGCCGACAAATC 61.571 55.000 30.73 15.42 0.00 2.17
1803 7369 0.320596 TAACGAACCGGCCGACAAAT 60.321 50.000 30.73 10.68 0.00 2.32
1804 7370 0.320596 ATAACGAACCGGCCGACAAA 60.321 50.000 30.73 5.23 0.00 2.83
1805 7371 0.320596 AATAACGAACCGGCCGACAA 60.321 50.000 30.73 4.61 0.00 3.18
1806 7372 1.015085 CAATAACGAACCGGCCGACA 61.015 55.000 30.73 3.00 0.00 4.35
1807 7373 1.698714 CCAATAACGAACCGGCCGAC 61.699 60.000 30.73 16.52 0.00 4.79
1808 7374 1.448189 CCAATAACGAACCGGCCGA 60.448 57.895 30.73 4.34 0.00 5.54
1809 7375 0.459934 TACCAATAACGAACCGGCCG 60.460 55.000 21.04 21.04 0.00 6.13
1810 7376 1.292992 CTACCAATAACGAACCGGCC 58.707 55.000 0.00 0.00 0.00 6.13
1811 7377 2.014335 ACTACCAATAACGAACCGGC 57.986 50.000 0.00 0.00 0.00 6.13
1812 7378 4.747810 ACTAACTACCAATAACGAACCGG 58.252 43.478 0.00 0.00 0.00 5.28
1813 7379 4.496895 CGACTAACTACCAATAACGAACCG 59.503 45.833 0.00 0.00 0.00 4.44
1814 7380 5.402398 ACGACTAACTACCAATAACGAACC 58.598 41.667 0.00 0.00 0.00 3.62
1815 7381 8.125448 AGATACGACTAACTACCAATAACGAAC 58.875 37.037 0.00 0.00 0.00 3.95
1816 7382 8.213518 AGATACGACTAACTACCAATAACGAA 57.786 34.615 0.00 0.00 0.00 3.85
1817 7383 7.792374 AGATACGACTAACTACCAATAACGA 57.208 36.000 0.00 0.00 0.00 3.85
1818 7384 7.589221 GGAAGATACGACTAACTACCAATAACG 59.411 40.741 0.00 0.00 0.00 3.18
1819 7385 8.628280 AGGAAGATACGACTAACTACCAATAAC 58.372 37.037 0.00 0.00 0.00 1.89
1820 7386 8.757982 AGGAAGATACGACTAACTACCAATAA 57.242 34.615 0.00 0.00 0.00 1.40
1821 7387 8.627403 CAAGGAAGATACGACTAACTACCAATA 58.373 37.037 0.00 0.00 0.00 1.90
1822 7388 7.490000 CAAGGAAGATACGACTAACTACCAAT 58.510 38.462 0.00 0.00 0.00 3.16
1823 7389 6.626623 GCAAGGAAGATACGACTAACTACCAA 60.627 42.308 0.00 0.00 0.00 3.67
1835 7401 3.242413 CGGATGTTTGCAAGGAAGATACG 60.242 47.826 0.00 0.00 29.50 3.06
1865 7431 3.304861 GCTGATTTCACACATGCTTGACA 60.305 43.478 6.60 0.00 0.00 3.58
1866 7432 3.240069 GCTGATTTCACACATGCTTGAC 58.760 45.455 6.60 0.00 0.00 3.18
1867 7433 2.885894 TGCTGATTTCACACATGCTTGA 59.114 40.909 6.60 0.00 0.00 3.02
1869 7435 3.762288 AGATGCTGATTTCACACATGCTT 59.238 39.130 0.00 0.00 0.00 3.91
1870 7436 3.353557 AGATGCTGATTTCACACATGCT 58.646 40.909 0.00 0.00 0.00 3.79
1871 7437 3.777465 AGATGCTGATTTCACACATGC 57.223 42.857 0.00 0.00 0.00 4.06
1872 7438 6.315642 AGAAGTAGATGCTGATTTCACACATG 59.684 38.462 0.00 0.00 0.00 3.21
1873 7439 6.413052 AGAAGTAGATGCTGATTTCACACAT 58.587 36.000 0.00 0.00 0.00 3.21
1874 7440 5.798132 AGAAGTAGATGCTGATTTCACACA 58.202 37.500 0.00 0.00 0.00 3.72
1875 7441 6.369890 TGAAGAAGTAGATGCTGATTTCACAC 59.630 38.462 0.00 0.00 0.00 3.82
1876 7442 6.466812 TGAAGAAGTAGATGCTGATTTCACA 58.533 36.000 0.00 0.00 0.00 3.58
1877 7443 6.974932 TGAAGAAGTAGATGCTGATTTCAC 57.025 37.500 0.00 0.00 0.00 3.18
1878 7444 7.333323 TCATGAAGAAGTAGATGCTGATTTCA 58.667 34.615 0.00 0.00 0.00 2.69
1879 7445 7.783090 TCATGAAGAAGTAGATGCTGATTTC 57.217 36.000 0.00 0.00 0.00 2.17
1880 7446 7.828223 AGTTCATGAAGAAGTAGATGCTGATTT 59.172 33.333 8.80 0.00 38.12 2.17
1881 7447 7.337167 AGTTCATGAAGAAGTAGATGCTGATT 58.663 34.615 8.80 0.00 38.12 2.57
1882 7448 6.887013 AGTTCATGAAGAAGTAGATGCTGAT 58.113 36.000 8.80 0.00 38.12 2.90
1884 7450 6.256104 CAGAGTTCATGAAGAAGTAGATGCTG 59.744 42.308 8.80 1.41 39.98 4.41
1885 7451 6.154192 TCAGAGTTCATGAAGAAGTAGATGCT 59.846 38.462 8.80 0.00 39.98 3.79
1897 7463 4.341366 TCAGCACTTCAGAGTTCATGAA 57.659 40.909 3.38 3.38 32.54 2.57
1898 7464 4.341366 TTCAGCACTTCAGAGTTCATGA 57.659 40.909 0.00 0.00 32.54 3.07
1899 7465 5.873712 AGTATTCAGCACTTCAGAGTTCATG 59.126 40.000 0.00 0.00 32.54 3.07
1900 7466 6.047511 AGTATTCAGCACTTCAGAGTTCAT 57.952 37.500 0.00 0.00 32.54 2.57
1901 7467 5.474578 AGTATTCAGCACTTCAGAGTTCA 57.525 39.130 0.00 0.00 32.54 3.18
1902 7468 5.698545 ACAAGTATTCAGCACTTCAGAGTTC 59.301 40.000 0.00 0.00 33.99 3.01
1903 7469 5.615289 ACAAGTATTCAGCACTTCAGAGTT 58.385 37.500 0.00 0.00 33.99 3.01
1904 7470 5.220710 ACAAGTATTCAGCACTTCAGAGT 57.779 39.130 0.00 0.00 33.99 3.24
1905 7471 5.233225 TGACAAGTATTCAGCACTTCAGAG 58.767 41.667 0.00 0.00 33.99 3.35
1906 7472 5.213891 TGACAAGTATTCAGCACTTCAGA 57.786 39.130 0.00 0.00 33.99 3.27
1907 7473 5.616424 GCTTGACAAGTATTCAGCACTTCAG 60.616 44.000 16.39 0.00 33.99 3.02
1908 7474 4.214119 GCTTGACAAGTATTCAGCACTTCA 59.786 41.667 16.39 0.00 33.99 3.02
1909 7475 4.378874 GGCTTGACAAGTATTCAGCACTTC 60.379 45.833 16.39 0.00 33.99 3.01
1910 7476 3.503748 GGCTTGACAAGTATTCAGCACTT 59.496 43.478 16.39 0.00 36.68 3.16
1911 7477 3.077359 GGCTTGACAAGTATTCAGCACT 58.923 45.455 16.39 0.00 0.00 4.40
1912 7478 2.813754 TGGCTTGACAAGTATTCAGCAC 59.186 45.455 16.39 0.00 0.00 4.40
1913 7479 3.138884 TGGCTTGACAAGTATTCAGCA 57.861 42.857 16.39 0.00 0.00 4.41
1914 7480 3.944015 AGATGGCTTGACAAGTATTCAGC 59.056 43.478 16.39 11.91 0.00 4.26
1915 7481 6.344500 AGTAGATGGCTTGACAAGTATTCAG 58.656 40.000 16.39 0.00 0.00 3.02
1916 7482 6.299805 AGTAGATGGCTTGACAAGTATTCA 57.700 37.500 16.39 10.17 0.00 2.57
1917 7483 7.044798 AGAAGTAGATGGCTTGACAAGTATTC 58.955 38.462 16.39 10.26 0.00 1.75
1918 7484 6.951971 AGAAGTAGATGGCTTGACAAGTATT 58.048 36.000 16.39 1.77 0.00 1.89
1919 7485 6.552445 AGAAGTAGATGGCTTGACAAGTAT 57.448 37.500 16.39 11.10 0.00 2.12
1920 7486 6.014584 TGAAGAAGTAGATGGCTTGACAAGTA 60.015 38.462 16.39 6.87 0.00 2.24
1921 7487 4.899352 AGAAGTAGATGGCTTGACAAGT 57.101 40.909 16.39 0.00 0.00 3.16
1922 7488 5.240891 TGAAGAAGTAGATGGCTTGACAAG 58.759 41.667 11.02 11.02 0.00 3.16
1923 7489 5.227569 TGAAGAAGTAGATGGCTTGACAA 57.772 39.130 0.00 0.00 0.00 3.18
1924 7490 4.890158 TGAAGAAGTAGATGGCTTGACA 57.110 40.909 0.00 0.00 0.00 3.58
1925 7491 5.423015 TCATGAAGAAGTAGATGGCTTGAC 58.577 41.667 0.00 0.00 0.00 3.18
1926 7492 5.682234 TCATGAAGAAGTAGATGGCTTGA 57.318 39.130 0.00 0.00 0.00 3.02
1927 7493 5.879223 AGTTCATGAAGAAGTAGATGGCTTG 59.121 40.000 8.80 0.00 38.12 4.01
1928 7494 5.879223 CAGTTCATGAAGAAGTAGATGGCTT 59.121 40.000 8.80 0.00 37.81 4.35
1929 7495 5.046014 ACAGTTCATGAAGAAGTAGATGGCT 60.046 40.000 8.80 0.00 37.81 4.75
1930 7496 5.064452 CACAGTTCATGAAGAAGTAGATGGC 59.936 44.000 8.80 0.00 37.81 4.40
1997 7566 1.060713 CGAGGCACGTCAGTTACTTG 58.939 55.000 0.00 0.00 37.22 3.16
2009 7578 1.689273 AGTCCAAGGATATCGAGGCAC 59.311 52.381 0.00 0.49 0.00 5.01
2087 7658 8.752187 ACTATCTTCACATAAACATTTGGCAAT 58.248 29.630 0.00 0.00 0.00 3.56
2123 7702 7.328249 CACGGCAAACACATGAAAAGTAAATAT 59.672 33.333 0.00 0.00 0.00 1.28
2165 7744 4.374689 TCACTGCATACAAACCCCTTAA 57.625 40.909 0.00 0.00 0.00 1.85
2188 7767 2.998670 CACTGTCCACTAGCATGAACAG 59.001 50.000 0.00 0.00 0.00 3.16
2204 7783 1.094785 GAACACAAGCACACCACTGT 58.905 50.000 0.00 0.00 0.00 3.55
2205 7784 0.381801 GGAACACAAGCACACCACTG 59.618 55.000 0.00 0.00 0.00 3.66
2206 7785 0.255890 AGGAACACAAGCACACCACT 59.744 50.000 0.00 0.00 0.00 4.00
2207 7786 1.102978 AAGGAACACAAGCACACCAC 58.897 50.000 0.00 0.00 0.00 4.16
2208 7787 1.102154 CAAGGAACACAAGCACACCA 58.898 50.000 0.00 0.00 0.00 4.17
2209 7788 1.065551 GTCAAGGAACACAAGCACACC 59.934 52.381 0.00 0.00 0.00 4.16
2210 7789 1.742831 TGTCAAGGAACACAAGCACAC 59.257 47.619 0.00 0.00 0.00 3.82
2225 7804 3.709587 TGTTTTTGGTAACCCCTGTCAA 58.290 40.909 0.00 0.00 0.00 3.18
2254 8098 5.643379 TTCAAAAGGCTAAATCTCGCAAT 57.357 34.783 0.00 0.00 0.00 3.56
2299 10347 2.574006 TCTGCACTTCAGCCTTCAAT 57.426 45.000 0.00 0.00 42.56 2.57
2533 10599 4.574674 ATGTGGTATGGATCACACAACT 57.425 40.909 0.00 0.00 45.65 3.16
2606 10698 0.385029 GCCACATGACACAACAGCAA 59.615 50.000 0.00 0.00 0.00 3.91
2921 13682 1.576421 CGGTCAAAGTGCAAGGAGC 59.424 57.895 0.00 0.00 45.96 4.70
2925 13686 0.798776 CTAGGCGGTCAAAGTGCAAG 59.201 55.000 0.00 0.00 0.00 4.01
2950 13711 0.664166 CCAAACGAGCAACACATGGC 60.664 55.000 0.00 0.00 0.00 4.40
2964 13725 7.046292 AGTGTTTACCAGGAAAATACCAAAC 57.954 36.000 0.00 0.00 30.74 2.93
3102 13892 5.380043 AGATAGCCATGTTCAAATCCGATT 58.620 37.500 0.00 0.00 0.00 3.34
3177 14000 1.164313 ATCCCCTCATTCATGGGCAT 58.836 50.000 0.00 0.00 42.03 4.40
3312 14138 4.141228 AGACAGGCTGCCATACTACTACTA 60.141 45.833 22.65 0.00 0.00 1.82
3313 14139 2.959707 GACAGGCTGCCATACTACTACT 59.040 50.000 22.65 0.00 0.00 2.57
3314 14140 2.959707 AGACAGGCTGCCATACTACTAC 59.040 50.000 22.65 1.70 0.00 2.73
3315 14141 2.959030 CAGACAGGCTGCCATACTACTA 59.041 50.000 22.65 0.00 37.90 1.82
3316 14142 1.759445 CAGACAGGCTGCCATACTACT 59.241 52.381 22.65 8.09 37.90 2.57
3317 14143 2.231215 CAGACAGGCTGCCATACTAC 57.769 55.000 22.65 5.89 37.90 2.73
3359 14216 1.030488 CATGGCAGACAAGCTCCCAG 61.030 60.000 0.00 0.00 34.17 4.45
3376 14233 5.596361 TGACAATCCACCAAAAACAGTACAT 59.404 36.000 0.00 0.00 0.00 2.29
3390 14248 2.543653 GCACAACACCTTGACAATCCAC 60.544 50.000 0.00 0.00 0.00 4.02
3451 14312 9.793259 TCTAATGTTCACCTTCAAAGATACTTT 57.207 29.630 0.00 0.00 0.00 2.66
3466 14429 6.173339 TCTCCACAATTCCTCTAATGTTCAC 58.827 40.000 0.00 0.00 0.00 3.18
3473 14436 6.601332 ACAAAGTTCTCCACAATTCCTCTAA 58.399 36.000 0.00 0.00 0.00 2.10
3504 14467 6.252233 TCTCTTTCTCTCCTTTCTCTGATCA 58.748 40.000 0.00 0.00 0.00 2.92
3537 14500 1.065709 AGTCCGCGTAAACCATCCATT 60.066 47.619 4.92 0.00 0.00 3.16
3568 14531 0.540830 CCTACTCTCTCCCCATCCGG 60.541 65.000 0.00 0.00 0.00 5.14
3584 14547 8.458843 GTTACTATTTTTGCATCTCTTTGCCTA 58.541 33.333 0.00 0.00 42.06 3.93
3593 14558 8.237267 GCAGTTACAGTTACTATTTTTGCATCT 58.763 33.333 0.00 0.00 0.00 2.90
3651 14617 2.096496 CACCAATCTCAGTGCCGAAATC 59.904 50.000 0.00 0.00 0.00 2.17
3721 14693 4.188462 TCCACAGCTGGTTTGTATTATCG 58.812 43.478 19.93 0.00 38.90 2.92
3735 14707 0.835941 GACATGAGGGATCCACAGCT 59.164 55.000 15.23 0.16 0.00 4.24
3737 14709 1.206878 TGGACATGAGGGATCCACAG 58.793 55.000 15.23 9.38 37.60 3.66
3778 14750 0.690762 AAATGCCACGGTACTCCACT 59.309 50.000 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.