Multiple sequence alignment - TraesCS3D01G338700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G338700 chr3D 100.000 3139 0 0 1 3139 451888661 451891799 0.000000e+00 5797.0
1 TraesCS3D01G338700 chr3D 93.958 331 19 1 2733 3063 151107643 151107314 1.680000e-137 499.0
2 TraesCS3D01G338700 chr3D 93.958 331 19 1 2733 3063 252398496 252398167 1.680000e-137 499.0
3 TraesCS3D01G338700 chr3D 93.958 331 19 1 2733 3063 307003569 307003240 1.680000e-137 499.0
4 TraesCS3D01G338700 chr3D 80.172 232 29 12 73 294 536978904 536979128 1.170000e-34 158.0
5 TraesCS3D01G338700 chr3A 90.317 599 37 8 795 1385 594496627 594497212 0.000000e+00 765.0
6 TraesCS3D01G338700 chr3A 88.344 489 28 11 1992 2458 594498614 594499095 7.600000e-156 560.0
7 TraesCS3D01G338700 chr3A 89.046 283 13 10 1503 1785 594498334 594498598 5.020000e-88 335.0
8 TraesCS3D01G338700 chr3A 90.498 221 11 2 2461 2677 594499379 594499593 1.840000e-72 283.0
9 TraesCS3D01G338700 chr3A 78.696 230 33 12 73 294 672209987 672210208 4.220000e-29 139.0
10 TraesCS3D01G338700 chr3A 81.457 151 21 3 627 772 594496498 594496646 1.980000e-22 117.0
11 TraesCS3D01G338700 chr3B 85.000 600 59 16 96 685 593547762 593548340 5.840000e-162 580.0
12 TraesCS3D01G338700 chr3B 89.607 356 21 9 700 1043 593548324 593548675 3.720000e-119 438.0
13 TraesCS3D01G338700 chr3B 91.810 232 15 1 1008 1239 593548676 593548903 1.400000e-83 320.0
14 TraesCS3D01G338700 chr5A 94.207 328 17 2 2733 3060 288953591 288953916 1.680000e-137 499.0
15 TraesCS3D01G338700 chr5A 93.902 328 18 2 2733 3060 288956834 288957159 7.820000e-136 494.0
16 TraesCS3D01G338700 chr2D 93.656 331 19 2 2731 3060 145926822 145927151 7.820000e-136 494.0
17 TraesCS3D01G338700 chr6D 93.353 331 21 1 2733 3063 129021402 129021073 3.640000e-134 488.0
18 TraesCS3D01G338700 chr1D 93.598 328 20 1 2733 3060 235336472 235336798 3.640000e-134 488.0
19 TraesCS3D01G338700 chr4A 92.128 343 24 3 2733 3075 39444718 39444379 6.090000e-132 481.0
20 TraesCS3D01G338700 chr7A 90.909 44 4 0 68 111 19099758 19099801 3.380000e-05 60.2
21 TraesCS3D01G338700 chr1B 94.595 37 2 0 3103 3139 360805071 360805035 1.220000e-04 58.4
22 TraesCS3D01G338700 chr1A 100.000 28 0 0 2432 2459 242805393 242805420 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G338700 chr3D 451888661 451891799 3138 False 5797.0 5797 100.000000 1 3139 1 chr3D.!!$F1 3138
1 TraesCS3D01G338700 chr3A 594496498 594499593 3095 False 412.0 765 87.932400 627 2677 5 chr3A.!!$F2 2050
2 TraesCS3D01G338700 chr3B 593547762 593548903 1141 False 446.0 580 88.805667 96 1239 3 chr3B.!!$F1 1143
3 TraesCS3D01G338700 chr5A 288953591 288957159 3568 False 496.5 499 94.054500 2733 3060 2 chr5A.!!$F1 327

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
322 326 0.322456 GGAAATTGCTTTTGGGGCCC 60.322 55.0 18.17 18.17 0.00 5.80 F
327 331 0.411452 TTGCTTTTGGGGCCCAGATA 59.589 50.0 27.05 8.66 33.81 1.98 F
1446 2469 0.093026 CGCCGATCGAACTGTTTGTC 59.907 55.0 18.66 4.51 41.67 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1427 2450 0.093026 GACAAACAGTTCGATCGGCG 59.907 55.0 16.41 0.0 42.69 6.46 R
1500 2523 0.171455 ATCACGAGCTCGACACTTCC 59.829 55.0 40.58 0.0 43.02 3.46 R
2528 3937 0.179113 CGGCTTGCTTCTCTCTCCTC 60.179 60.0 0.00 0.0 0.00 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 9.921637 AATTTTAATGATGAAATACACCGTTGT 57.078 25.926 0.00 0.00 40.02 3.32
36 37 9.921637 ATTTTAATGATGAAATACACCGTTGTT 57.078 25.926 0.00 0.00 37.15 2.83
37 38 8.958175 TTTAATGATGAAATACACCGTTGTTC 57.042 30.769 0.00 0.00 37.15 3.18
38 39 6.567687 AATGATGAAATACACCGTTGTTCA 57.432 33.333 0.00 0.00 37.15 3.18
39 40 6.567687 ATGATGAAATACACCGTTGTTCAA 57.432 33.333 0.00 0.00 37.15 2.69
40 41 6.567687 TGATGAAATACACCGTTGTTCAAT 57.432 33.333 0.00 0.00 37.15 2.57
41 42 6.607689 TGATGAAATACACCGTTGTTCAATC 58.392 36.000 0.00 0.00 37.15 2.67
42 43 6.429692 TGATGAAATACACCGTTGTTCAATCT 59.570 34.615 0.00 0.00 37.15 2.40
43 44 7.604545 TGATGAAATACACCGTTGTTCAATCTA 59.395 33.333 0.00 0.00 37.15 1.98
44 45 7.124347 TGAAATACACCGTTGTTCAATCTAC 57.876 36.000 0.00 0.00 37.15 2.59
45 46 6.932400 TGAAATACACCGTTGTTCAATCTACT 59.068 34.615 0.00 0.00 37.15 2.57
46 47 8.089597 TGAAATACACCGTTGTTCAATCTACTA 58.910 33.333 0.00 0.00 37.15 1.82
47 48 8.836268 AAATACACCGTTGTTCAATCTACTAA 57.164 30.769 0.00 0.00 37.15 2.24
48 49 8.836268 AATACACCGTTGTTCAATCTACTAAA 57.164 30.769 0.00 0.00 37.15 1.85
49 50 9.444600 AATACACCGTTGTTCAATCTACTAAAT 57.555 29.630 0.00 0.00 37.15 1.40
52 53 9.444600 ACACCGTTGTTCAATCTACTAAATATT 57.555 29.630 0.00 0.00 28.43 1.28
84 85 7.873739 ACAGCTCAAATTATGTTTTTGTAGC 57.126 32.000 0.00 0.00 37.42 3.58
85 86 7.432869 ACAGCTCAAATTATGTTTTTGTAGCA 58.567 30.769 15.82 0.00 38.38 3.49
86 87 7.382218 ACAGCTCAAATTATGTTTTTGTAGCAC 59.618 33.333 15.82 0.00 38.38 4.40
87 88 7.381948 CAGCTCAAATTATGTTTTTGTAGCACA 59.618 33.333 15.82 0.00 38.38 4.57
88 89 8.090214 AGCTCAAATTATGTTTTTGTAGCACAT 58.910 29.630 15.82 0.00 38.38 3.21
89 90 8.164153 GCTCAAATTATGTTTTTGTAGCACATG 58.836 33.333 0.00 0.00 37.28 3.21
90 91 8.016497 TCAAATTATGTTTTTGTAGCACATGC 57.984 30.769 0.00 0.00 37.07 4.06
91 92 7.654923 TCAAATTATGTTTTTGTAGCACATGCA 59.345 29.630 6.64 0.00 38.08 3.96
92 93 8.444715 CAAATTATGTTTTTGTAGCACATGCAT 58.555 29.630 6.64 0.00 35.19 3.96
93 94 8.550710 AATTATGTTTTTGTAGCACATGCATT 57.449 26.923 6.64 0.00 45.16 3.56
94 95 9.650539 AATTATGTTTTTGTAGCACATGCATTA 57.349 25.926 6.64 0.00 45.16 1.90
95 96 9.820725 ATTATGTTTTTGTAGCACATGCATTAT 57.179 25.926 6.64 0.00 45.16 1.28
96 97 9.650539 TTATGTTTTTGTAGCACATGCATTATT 57.349 25.926 6.64 0.00 45.16 1.40
97 98 7.579589 TGTTTTTGTAGCACATGCATTATTC 57.420 32.000 6.64 0.00 45.16 1.75
98 99 7.150640 TGTTTTTGTAGCACATGCATTATTCA 58.849 30.769 6.64 0.00 45.16 2.57
99 100 7.116090 TGTTTTTGTAGCACATGCATTATTCAC 59.884 33.333 6.64 0.00 45.16 3.18
100 101 6.513806 TTTGTAGCACATGCATTATTCACT 57.486 33.333 6.64 0.00 45.16 3.41
101 102 7.622893 TTTGTAGCACATGCATTATTCACTA 57.377 32.000 6.64 0.00 45.16 2.74
102 103 7.806409 TTGTAGCACATGCATTATTCACTAT 57.194 32.000 6.64 0.00 45.16 2.12
103 104 8.900983 TTGTAGCACATGCATTATTCACTATA 57.099 30.769 6.64 0.00 45.16 1.31
183 184 8.511465 TGAAACTTTTCACAGTCGTAGTATAC 57.489 34.615 0.07 0.00 41.88 1.47
242 246 9.921637 TCTGAAACTTTAAATTGTGTTTTCTGT 57.078 25.926 5.17 0.00 33.49 3.41
272 276 3.320610 AGTAGGGCTTCATAGAGCTCA 57.679 47.619 17.77 2.09 45.78 4.26
302 306 3.550437 AATCCACTCTCCAGCACATAC 57.450 47.619 0.00 0.00 0.00 2.39
318 322 3.925913 CACATACGGAAATTGCTTTTGGG 59.074 43.478 0.00 0.00 0.00 4.12
322 326 0.322456 GGAAATTGCTTTTGGGGCCC 60.322 55.000 18.17 18.17 0.00 5.80
327 331 0.411452 TTGCTTTTGGGGCCCAGATA 59.589 50.000 27.05 8.66 33.81 1.98
333 337 4.516323 CTTTTGGGGCCCAGATATTTTTG 58.484 43.478 27.05 5.99 33.81 2.44
334 338 2.173126 TGGGGCCCAGATATTTTTGG 57.827 50.000 24.76 0.00 0.00 3.28
413 418 4.884744 CCTAGGGATGATACTACATCTCCG 59.115 50.000 0.00 0.00 45.68 4.63
417 422 5.946972 AGGGATGATACTACATCTCCGTAAG 59.053 44.000 0.00 0.00 45.68 2.34
465 470 8.147642 ACTTCAAACTACAGAGAAAAGACATG 57.852 34.615 0.00 0.00 0.00 3.21
470 475 9.956720 CAAACTACAGAGAAAAGACATGATTTT 57.043 29.630 0.00 6.41 32.68 1.82
472 477 8.682936 ACTACAGAGAAAAGACATGATTTTGT 57.317 30.769 15.00 12.08 30.22 2.83
473 478 9.125026 ACTACAGAGAAAAGACATGATTTTGTT 57.875 29.630 15.00 6.31 30.22 2.83
474 479 9.956720 CTACAGAGAAAAGACATGATTTTGTTT 57.043 29.630 15.00 6.67 30.22 2.83
674 718 5.116180 CCATTATACCTTGAAGCACTTCGA 58.884 41.667 5.95 3.25 42.28 3.71
675 719 5.584649 CCATTATACCTTGAAGCACTTCGAA 59.415 40.000 0.00 0.00 42.28 3.71
676 720 6.456988 CCATTATACCTTGAAGCACTTCGAAC 60.457 42.308 5.95 0.00 42.28 3.95
677 721 2.622064 ACCTTGAAGCACTTCGAACT 57.378 45.000 5.95 0.00 42.28 3.01
678 722 2.213499 ACCTTGAAGCACTTCGAACTG 58.787 47.619 5.95 0.00 42.28 3.16
679 723 1.532868 CCTTGAAGCACTTCGAACTGG 59.467 52.381 5.95 0.00 42.28 4.00
680 724 2.213499 CTTGAAGCACTTCGAACTGGT 58.787 47.619 5.95 4.00 42.28 4.00
681 725 2.325583 TGAAGCACTTCGAACTGGTT 57.674 45.000 18.14 18.14 42.28 3.67
682 726 1.939934 TGAAGCACTTCGAACTGGTTG 59.060 47.619 21.57 3.04 42.28 3.77
683 727 2.210116 GAAGCACTTCGAACTGGTTGA 58.790 47.619 21.57 0.00 0.00 3.18
684 728 2.325583 AGCACTTCGAACTGGTTGAA 57.674 45.000 4.00 0.00 0.00 2.69
685 729 2.851195 AGCACTTCGAACTGGTTGAAT 58.149 42.857 4.00 0.00 0.00 2.57
686 730 3.214328 AGCACTTCGAACTGGTTGAATT 58.786 40.909 4.00 0.00 0.00 2.17
687 731 3.003689 AGCACTTCGAACTGGTTGAATTG 59.996 43.478 8.29 8.29 0.00 2.32
688 732 3.243068 GCACTTCGAACTGGTTGAATTGT 60.243 43.478 12.82 0.00 0.00 2.71
689 733 4.527564 CACTTCGAACTGGTTGAATTGTC 58.472 43.478 5.17 0.00 0.00 3.18
690 734 4.273480 CACTTCGAACTGGTTGAATTGTCT 59.727 41.667 5.17 0.00 0.00 3.41
691 735 5.465390 CACTTCGAACTGGTTGAATTGTCTA 59.535 40.000 5.17 0.00 0.00 2.59
692 736 6.018262 CACTTCGAACTGGTTGAATTGTCTAA 60.018 38.462 5.17 0.00 0.00 2.10
693 737 6.540914 ACTTCGAACTGGTTGAATTGTCTAAA 59.459 34.615 0.00 0.00 0.00 1.85
694 738 6.928979 TCGAACTGGTTGAATTGTCTAAAA 57.071 33.333 0.00 0.00 0.00 1.52
695 739 7.323049 TCGAACTGGTTGAATTGTCTAAAAA 57.677 32.000 0.00 0.00 0.00 1.94
734 778 0.465460 AGAGTGCCAAAGCGGAAACA 60.465 50.000 0.00 0.00 44.31 2.83
769 813 4.509600 CCTTCGATTAGACCAATCTGCTTC 59.490 45.833 0.00 0.00 40.89 3.86
770 814 4.060038 TCGATTAGACCAATCTGCTTCC 57.940 45.455 0.00 0.00 40.89 3.46
771 815 3.134458 CGATTAGACCAATCTGCTTCCC 58.866 50.000 0.00 0.00 40.89 3.97
772 816 3.481453 GATTAGACCAATCTGCTTCCCC 58.519 50.000 0.00 0.00 40.06 4.81
861 908 2.356278 GGACAGCCAGGATGCCAA 59.644 61.111 4.01 0.00 31.97 4.52
899 946 5.491982 CACTGATTATATAAGGACCAGGGC 58.508 45.833 15.32 0.00 0.00 5.19
944 991 2.405594 CGGAGACTTCGGAGCTCG 59.594 66.667 7.83 3.33 40.90 5.03
1024 1080 1.179814 AAGAGCCTCGTCGTCACCTT 61.180 55.000 0.00 0.00 0.00 3.50
1056 1148 1.302033 CGGCTATCCCATGCAGGTC 60.302 63.158 0.00 0.00 34.66 3.85
1196 1288 1.673168 CAAGGTAAGCTGGATCCTGC 58.327 55.000 30.59 30.59 40.49 4.85
1221 1313 1.724973 CGCTGCATCAATCGATCATGC 60.725 52.381 25.20 25.20 42.81 4.06
1239 1331 0.822121 GCCGTCCTTGTCCAAAACCT 60.822 55.000 0.00 0.00 0.00 3.50
1240 1332 1.543871 GCCGTCCTTGTCCAAAACCTA 60.544 52.381 0.00 0.00 0.00 3.08
1241 1333 2.878526 GCCGTCCTTGTCCAAAACCTAT 60.879 50.000 0.00 0.00 0.00 2.57
1242 1334 3.007635 CCGTCCTTGTCCAAAACCTATC 58.992 50.000 0.00 0.00 0.00 2.08
1244 1336 3.307480 CGTCCTTGTCCAAAACCTATCCT 60.307 47.826 0.00 0.00 0.00 3.24
1246 1338 4.700692 GTCCTTGTCCAAAACCTATCCTTC 59.299 45.833 0.00 0.00 0.00 3.46
1247 1339 4.601857 TCCTTGTCCAAAACCTATCCTTCT 59.398 41.667 0.00 0.00 0.00 2.85
1248 1340 4.702131 CCTTGTCCAAAACCTATCCTTCTG 59.298 45.833 0.00 0.00 0.00 3.02
1250 1342 5.319043 TGTCCAAAACCTATCCTTCTGTT 57.681 39.130 0.00 0.00 0.00 3.16
1251 1343 5.070001 TGTCCAAAACCTATCCTTCTGTTG 58.930 41.667 0.00 0.00 0.00 3.33
1252 1344 5.163141 TGTCCAAAACCTATCCTTCTGTTGA 60.163 40.000 0.00 0.00 0.00 3.18
1253 1345 5.946377 GTCCAAAACCTATCCTTCTGTTGAT 59.054 40.000 0.00 0.00 0.00 2.57
1254 1346 6.434340 GTCCAAAACCTATCCTTCTGTTGATT 59.566 38.462 0.00 0.00 0.00 2.57
1257 1349 7.414098 CCAAAACCTATCCTTCTGTTGATTACG 60.414 40.741 0.00 0.00 0.00 3.18
1259 1351 4.406003 ACCTATCCTTCTGTTGATTACGCT 59.594 41.667 0.00 0.00 0.00 5.07
1260 1352 4.747108 CCTATCCTTCTGTTGATTACGCTG 59.253 45.833 0.00 0.00 0.00 5.18
1262 1354 2.009774 CCTTCTGTTGATTACGCTGGG 58.990 52.381 0.00 0.00 0.00 4.45
1263 1355 2.009774 CTTCTGTTGATTACGCTGGGG 58.990 52.381 0.00 0.00 0.00 4.96
1292 1390 1.066430 GTGGTTCAGGACAAGGCGATA 60.066 52.381 0.00 0.00 0.00 2.92
1325 1423 1.191489 TGAGGAACATCGTGGAGGCA 61.191 55.000 0.00 0.00 0.00 4.75
1386 2406 0.536460 TGCGGTTTTGGTTCCTCCTC 60.536 55.000 0.00 0.00 37.07 3.71
1398 2418 4.905456 TGGTTCCTCCTCTGTTTTCTTCTA 59.095 41.667 0.00 0.00 37.07 2.10
1416 2439 6.395629 TCTTCTATCCGGTTCTTAACTGTTG 58.604 40.000 0.00 0.00 35.99 3.33
1443 2466 4.979204 TCGCCGATCGAACTGTTT 57.021 50.000 18.66 0.00 45.36 2.83
1444 2467 2.441023 TCGCCGATCGAACTGTTTG 58.559 52.632 18.66 1.14 45.36 2.93
1446 2469 0.093026 CGCCGATCGAACTGTTTGTC 59.907 55.000 18.66 4.51 41.67 3.18
1447 2470 1.429463 GCCGATCGAACTGTTTGTCT 58.571 50.000 18.66 0.00 0.00 3.41
1449 2472 2.411547 GCCGATCGAACTGTTTGTCTTG 60.412 50.000 18.66 0.00 0.00 3.02
1450 2473 2.411547 CCGATCGAACTGTTTGTCTTGC 60.412 50.000 18.66 0.00 0.00 4.01
1452 2475 3.303066 CGATCGAACTGTTTGTCTTGCAA 60.303 43.478 10.26 0.00 34.87 4.08
1453 2476 3.673746 TCGAACTGTTTGTCTTGCAAG 57.326 42.857 20.81 20.81 38.47 4.01
1454 2477 2.354510 TCGAACTGTTTGTCTTGCAAGG 59.645 45.455 25.73 10.54 38.47 3.61
1455 2478 2.463876 GAACTGTTTGTCTTGCAAGGC 58.536 47.619 24.15 24.15 38.47 4.35
1456 2479 0.381801 ACTGTTTGTCTTGCAAGGCG 59.618 50.000 24.99 13.27 38.47 5.52
1457 2480 0.662619 CTGTTTGTCTTGCAAGGCGA 59.337 50.000 24.99 21.31 38.47 5.54
1458 2481 1.065401 CTGTTTGTCTTGCAAGGCGAA 59.935 47.619 26.36 26.36 38.47 4.70
1459 2482 1.474478 TGTTTGTCTTGCAAGGCGAAA 59.526 42.857 30.46 23.76 35.89 3.46
1460 2483 2.094494 TGTTTGTCTTGCAAGGCGAAAA 60.094 40.909 30.46 24.58 35.89 2.29
1461 2484 3.123050 GTTTGTCTTGCAAGGCGAAAAT 58.877 40.909 30.46 0.00 35.89 1.82
1464 2487 3.791245 TGTCTTGCAAGGCGAAAATTTT 58.209 36.364 24.99 2.28 31.96 1.82
1469 2492 7.816995 TGTCTTGCAAGGCGAAAATTTTAATAT 59.183 29.630 24.99 0.00 31.96 1.28
1470 2493 8.321005 GTCTTGCAAGGCGAAAATTTTAATATC 58.679 33.333 25.73 0.00 0.00 1.63
1480 2503 8.258047 CGAAAATTTTAATATCGCACCTCTTC 57.742 34.615 2.75 0.00 0.00 2.87
1487 2510 5.543507 AATATCGCACCTCTTCTCTGATT 57.456 39.130 0.00 0.00 0.00 2.57
1491 2514 1.933247 CACCTCTTCTCTGATTCGCC 58.067 55.000 0.00 0.00 0.00 5.54
1492 2515 1.205655 CACCTCTTCTCTGATTCGCCA 59.794 52.381 0.00 0.00 0.00 5.69
1500 2523 1.998315 CTCTGATTCGCCAGTGAGTTG 59.002 52.381 0.00 0.00 35.71 3.16
1501 2524 1.081892 CTGATTCGCCAGTGAGTTGG 58.918 55.000 0.00 0.00 41.35 3.77
1511 2618 2.398498 CAGTGAGTTGGAAGTGTCGAG 58.602 52.381 0.00 0.00 0.00 4.04
1520 2627 1.402984 GGAAGTGTCGAGCTCGTGATT 60.403 52.381 33.33 22.96 40.80 2.57
1521 2628 2.329379 GAAGTGTCGAGCTCGTGATTT 58.671 47.619 33.33 22.63 40.80 2.17
1532 2639 3.797256 AGCTCGTGATTTGCGTAATAGAC 59.203 43.478 0.00 0.00 0.00 2.59
1632 2739 2.543687 ATCAAGTCCGTGTCCGCTCG 62.544 60.000 0.00 0.00 0.00 5.03
1698 2805 3.589988 CTTCAAGGTACGCTTCAGACAT 58.410 45.455 0.00 0.00 0.00 3.06
1712 2819 4.451629 TCAGACATACGAGTTTCCTTCC 57.548 45.455 0.00 0.00 0.00 3.46
1713 2820 4.087182 TCAGACATACGAGTTTCCTTCCT 58.913 43.478 0.00 0.00 0.00 3.36
1714 2821 4.527038 TCAGACATACGAGTTTCCTTCCTT 59.473 41.667 0.00 0.00 0.00 3.36
1715 2822 5.011738 TCAGACATACGAGTTTCCTTCCTTT 59.988 40.000 0.00 0.00 0.00 3.11
1716 2823 5.348997 CAGACATACGAGTTTCCTTCCTTTC 59.651 44.000 0.00 0.00 0.00 2.62
1717 2824 5.246429 AGACATACGAGTTTCCTTCCTTTCT 59.754 40.000 0.00 0.00 0.00 2.52
1718 2825 6.436532 AGACATACGAGTTTCCTTCCTTTCTA 59.563 38.462 0.00 0.00 0.00 2.10
1719 2826 6.396450 ACATACGAGTTTCCTTCCTTTCTAC 58.604 40.000 0.00 0.00 0.00 2.59
1720 2827 6.210984 ACATACGAGTTTCCTTCCTTTCTACT 59.789 38.462 0.00 0.00 0.00 2.57
1721 2828 7.395489 ACATACGAGTTTCCTTCCTTTCTACTA 59.605 37.037 0.00 0.00 0.00 1.82
1724 2831 6.210984 ACGAGTTTCCTTCCTTTCTACTATGT 59.789 38.462 0.00 0.00 0.00 2.29
1727 2834 7.974504 AGTTTCCTTCCTTTCTACTATGTTCA 58.025 34.615 0.00 0.00 0.00 3.18
1733 2840 7.611855 CCTTCCTTTCTACTATGTTCAATTGGT 59.388 37.037 5.42 0.00 0.00 3.67
1734 2841 7.921786 TCCTTTCTACTATGTTCAATTGGTG 57.078 36.000 5.42 0.00 0.00 4.17
1748 2855 1.164411 TTGGTGGTGCTGCTTAATCG 58.836 50.000 0.00 0.00 0.00 3.34
1750 2857 1.429423 GTGGTGCTGCTTAATCGGC 59.571 57.895 3.10 3.10 38.78 5.54
1767 2874 1.662629 CGGCAGCATGTAGTCAAAGAG 59.337 52.381 0.00 0.00 39.31 2.85
1774 2881 5.120830 CAGCATGTAGTCAAAGAGTTGGTAC 59.879 44.000 0.00 0.00 35.29 3.34
1789 2896 6.294361 AGTTGGTACTCATACTGTATGCAA 57.706 37.500 20.37 15.32 36.14 4.08
1790 2897 6.889198 AGTTGGTACTCATACTGTATGCAAT 58.111 36.000 20.37 11.62 36.14 3.56
1792 2899 6.731292 TGGTACTCATACTGTATGCAATCT 57.269 37.500 20.37 5.65 36.14 2.40
1793 2900 7.124573 TGGTACTCATACTGTATGCAATCTT 57.875 36.000 20.37 5.71 36.14 2.40
1794 2901 8.245195 TGGTACTCATACTGTATGCAATCTTA 57.755 34.615 20.37 3.49 36.14 2.10
1795 2902 8.700973 TGGTACTCATACTGTATGCAATCTTAA 58.299 33.333 20.37 2.85 36.14 1.85
1796 2903 9.712305 GGTACTCATACTGTATGCAATCTTAAT 57.288 33.333 20.37 0.00 36.14 1.40
1799 2906 9.265901 ACTCATACTGTATGCAATCTTAATCAC 57.734 33.333 20.37 0.00 36.14 3.06
1800 2907 9.486497 CTCATACTGTATGCAATCTTAATCACT 57.514 33.333 20.37 0.00 36.14 3.41
1801 2908 9.836864 TCATACTGTATGCAATCTTAATCACTT 57.163 29.630 20.37 0.00 36.14 3.16
1805 2912 9.890629 ACTGTATGCAATCTTAATCACTTTAGA 57.109 29.630 0.00 0.00 0.00 2.10
1807 2914 8.830580 TGTATGCAATCTTAATCACTTTAGAGC 58.169 33.333 0.00 0.00 0.00 4.09
1808 2915 6.349973 TGCAATCTTAATCACTTTAGAGCG 57.650 37.500 0.00 0.00 0.00 5.03
1809 2916 5.874810 TGCAATCTTAATCACTTTAGAGCGT 59.125 36.000 0.00 0.00 0.00 5.07
1810 2917 6.371548 TGCAATCTTAATCACTTTAGAGCGTT 59.628 34.615 0.00 0.00 0.00 4.84
1811 2918 6.684555 GCAATCTTAATCACTTTAGAGCGTTG 59.315 38.462 0.00 0.00 0.00 4.10
1812 2919 6.910536 ATCTTAATCACTTTAGAGCGTTGG 57.089 37.500 0.00 0.00 0.00 3.77
1813 2920 5.790593 TCTTAATCACTTTAGAGCGTTGGT 58.209 37.500 0.00 0.00 0.00 3.67
1814 2921 6.927416 TCTTAATCACTTTAGAGCGTTGGTA 58.073 36.000 0.00 0.00 0.00 3.25
1815 2922 7.033791 TCTTAATCACTTTAGAGCGTTGGTAG 58.966 38.462 0.00 0.00 0.00 3.18
1816 2923 4.803098 ATCACTTTAGAGCGTTGGTAGT 57.197 40.909 0.00 0.00 0.00 2.73
1817 2924 5.909621 ATCACTTTAGAGCGTTGGTAGTA 57.090 39.130 0.00 0.00 0.00 1.82
1818 2925 5.909621 TCACTTTAGAGCGTTGGTAGTAT 57.090 39.130 0.00 0.00 0.00 2.12
1819 2926 7.578310 ATCACTTTAGAGCGTTGGTAGTATA 57.422 36.000 0.00 0.00 0.00 1.47
1820 2927 7.578310 TCACTTTAGAGCGTTGGTAGTATAT 57.422 36.000 0.00 0.00 0.00 0.86
1821 2928 8.681486 TCACTTTAGAGCGTTGGTAGTATATA 57.319 34.615 0.00 0.00 0.00 0.86
1822 2929 9.293404 TCACTTTAGAGCGTTGGTAGTATATAT 57.707 33.333 0.00 0.00 0.00 0.86
1823 2930 9.343103 CACTTTAGAGCGTTGGTAGTATATATG 57.657 37.037 0.00 0.00 0.00 1.78
1824 2931 9.075678 ACTTTAGAGCGTTGGTAGTATATATGT 57.924 33.333 0.00 0.00 0.00 2.29
1829 2936 9.676861 AGAGCGTTGGTAGTATATATGTATACA 57.323 33.333 18.50 8.27 43.32 2.29
1858 2965 8.697846 AAAACATGAATCTTCATACAAGCATG 57.302 30.769 0.00 0.00 45.62 4.06
1859 2966 7.634671 AACATGAATCTTCATACAAGCATGA 57.365 32.000 0.00 0.00 45.62 3.07
1860 2967 7.634671 ACATGAATCTTCATACAAGCATGAA 57.365 32.000 0.00 0.00 45.62 2.57
1861 2968 8.234136 ACATGAATCTTCATACAAGCATGAAT 57.766 30.769 0.00 0.00 45.62 2.57
1862 2969 8.350722 ACATGAATCTTCATACAAGCATGAATC 58.649 33.333 0.00 0.00 45.62 2.52
1863 2970 8.568794 CATGAATCTTCATACAAGCATGAATCT 58.431 33.333 5.16 0.00 45.62 2.40
1864 2971 8.515695 TGAATCTTCATACAAGCATGAATCTT 57.484 30.769 0.00 0.00 42.49 2.40
1865 2972 8.618677 TGAATCTTCATACAAGCATGAATCTTC 58.381 33.333 0.00 4.58 42.49 2.87
1866 2973 8.749026 AATCTTCATACAAGCATGAATCTTCT 57.251 30.769 0.00 0.00 42.49 2.85
1867 2974 8.749026 ATCTTCATACAAGCATGAATCTTCTT 57.251 30.769 0.00 0.00 42.49 2.52
1868 2975 9.842775 ATCTTCATACAAGCATGAATCTTCTTA 57.157 29.630 0.00 0.00 42.49 2.10
1869 2976 9.102757 TCTTCATACAAGCATGAATCTTCTTAC 57.897 33.333 0.00 0.00 42.49 2.34
1870 2977 8.791327 TTCATACAAGCATGAATCTTCTTACA 57.209 30.769 0.00 0.00 39.43 2.41
1871 2978 8.791327 TCATACAAGCATGAATCTTCTTACAA 57.209 30.769 0.00 0.00 32.01 2.41
1872 2979 9.399797 TCATACAAGCATGAATCTTCTTACAAT 57.600 29.630 0.00 0.00 32.01 2.71
1875 2982 7.688372 ACAAGCATGAATCTTCTTACAATACG 58.312 34.615 0.00 0.00 0.00 3.06
1876 2983 7.334421 ACAAGCATGAATCTTCTTACAATACGT 59.666 33.333 0.00 0.00 0.00 3.57
1877 2984 7.470289 AGCATGAATCTTCTTACAATACGTC 57.530 36.000 0.00 0.00 0.00 4.34
1878 2985 7.268586 AGCATGAATCTTCTTACAATACGTCT 58.731 34.615 0.00 0.00 0.00 4.18
1879 2986 7.766278 AGCATGAATCTTCTTACAATACGTCTT 59.234 33.333 0.00 0.00 0.00 3.01
1880 2987 9.031360 GCATGAATCTTCTTACAATACGTCTTA 57.969 33.333 0.00 0.00 0.00 2.10
1911 3018 7.201145 TGAGACGAGGAAGTAATATTTAGTGC 58.799 38.462 0.00 0.00 0.00 4.40
1912 3019 7.108841 AGACGAGGAAGTAATATTTAGTGCA 57.891 36.000 0.00 0.00 0.00 4.57
1913 3020 7.553334 AGACGAGGAAGTAATATTTAGTGCAA 58.447 34.615 0.00 0.00 0.00 4.08
1914 3021 8.038944 AGACGAGGAAGTAATATTTAGTGCAAA 58.961 33.333 0.00 0.00 0.00 3.68
1915 3022 7.971455 ACGAGGAAGTAATATTTAGTGCAAAC 58.029 34.615 0.00 0.00 0.00 2.93
1916 3023 7.117454 CGAGGAAGTAATATTTAGTGCAAACG 58.883 38.462 0.00 0.00 0.00 3.60
1917 3024 7.009815 CGAGGAAGTAATATTTAGTGCAAACGA 59.990 37.037 0.00 0.00 0.00 3.85
1918 3025 8.732746 AGGAAGTAATATTTAGTGCAAACGAT 57.267 30.769 0.00 0.00 0.00 3.73
1919 3026 8.827677 AGGAAGTAATATTTAGTGCAAACGATC 58.172 33.333 0.00 0.00 0.00 3.69
1920 3027 8.068380 GGAAGTAATATTTAGTGCAAACGATCC 58.932 37.037 0.00 0.00 0.00 3.36
1921 3028 8.500753 AAGTAATATTTAGTGCAAACGATCCA 57.499 30.769 0.00 0.00 0.00 3.41
1922 3029 8.500753 AGTAATATTTAGTGCAAACGATCCAA 57.499 30.769 0.00 0.00 0.00 3.53
1923 3030 8.952278 AGTAATATTTAGTGCAAACGATCCAAA 58.048 29.630 0.00 0.00 0.00 3.28
1924 3031 9.006215 GTAATATTTAGTGCAAACGATCCAAAC 57.994 33.333 0.00 0.00 0.00 2.93
1925 3032 3.907894 TTAGTGCAAACGATCCAAACC 57.092 42.857 0.00 0.00 0.00 3.27
1926 3033 1.981256 AGTGCAAACGATCCAAACCT 58.019 45.000 0.00 0.00 0.00 3.50
1927 3034 1.880027 AGTGCAAACGATCCAAACCTC 59.120 47.619 0.00 0.00 0.00 3.85
1928 3035 1.606668 GTGCAAACGATCCAAACCTCA 59.393 47.619 0.00 0.00 0.00 3.86
1929 3036 1.606668 TGCAAACGATCCAAACCTCAC 59.393 47.619 0.00 0.00 0.00 3.51
1930 3037 1.880027 GCAAACGATCCAAACCTCACT 59.120 47.619 0.00 0.00 0.00 3.41
1931 3038 2.293399 GCAAACGATCCAAACCTCACTT 59.707 45.455 0.00 0.00 0.00 3.16
1932 3039 3.243401 GCAAACGATCCAAACCTCACTTT 60.243 43.478 0.00 0.00 0.00 2.66
1933 3040 4.023536 GCAAACGATCCAAACCTCACTTTA 60.024 41.667 0.00 0.00 0.00 1.85
1934 3041 5.449304 CAAACGATCCAAACCTCACTTTAC 58.551 41.667 0.00 0.00 0.00 2.01
1935 3042 3.671716 ACGATCCAAACCTCACTTTACC 58.328 45.455 0.00 0.00 0.00 2.85
1936 3043 3.326880 ACGATCCAAACCTCACTTTACCT 59.673 43.478 0.00 0.00 0.00 3.08
1937 3044 4.202430 ACGATCCAAACCTCACTTTACCTT 60.202 41.667 0.00 0.00 0.00 3.50
1938 3045 4.760204 CGATCCAAACCTCACTTTACCTTT 59.240 41.667 0.00 0.00 0.00 3.11
1939 3046 5.240844 CGATCCAAACCTCACTTTACCTTTT 59.759 40.000 0.00 0.00 0.00 2.27
1940 3047 6.238925 CGATCCAAACCTCACTTTACCTTTTT 60.239 38.462 0.00 0.00 0.00 1.94
1941 3048 6.215495 TCCAAACCTCACTTTACCTTTTTG 57.785 37.500 0.00 0.00 0.00 2.44
1942 3049 4.808895 CCAAACCTCACTTTACCTTTTTGC 59.191 41.667 0.00 0.00 0.00 3.68
1943 3050 5.395214 CCAAACCTCACTTTACCTTTTTGCT 60.395 40.000 0.00 0.00 0.00 3.91
1944 3051 4.918810 ACCTCACTTTACCTTTTTGCTG 57.081 40.909 0.00 0.00 0.00 4.41
1945 3052 4.532834 ACCTCACTTTACCTTTTTGCTGA 58.467 39.130 0.00 0.00 0.00 4.26
1946 3053 4.953579 ACCTCACTTTACCTTTTTGCTGAA 59.046 37.500 0.00 0.00 0.00 3.02
1947 3054 5.163550 ACCTCACTTTACCTTTTTGCTGAAC 60.164 40.000 0.00 0.00 0.00 3.18
1948 3055 5.163561 CCTCACTTTACCTTTTTGCTGAACA 60.164 40.000 0.00 0.00 0.00 3.18
1949 3056 6.461509 CCTCACTTTACCTTTTTGCTGAACAT 60.462 38.462 0.00 0.00 0.00 2.71
1950 3057 6.872920 TCACTTTACCTTTTTGCTGAACATT 58.127 32.000 0.00 0.00 0.00 2.71
1951 3058 7.327214 TCACTTTACCTTTTTGCTGAACATTT 58.673 30.769 0.00 0.00 0.00 2.32
1952 3059 7.821846 TCACTTTACCTTTTTGCTGAACATTTT 59.178 29.630 0.00 0.00 0.00 1.82
1953 3060 9.092876 CACTTTACCTTTTTGCTGAACATTTTA 57.907 29.630 0.00 0.00 0.00 1.52
1954 3061 9.830975 ACTTTACCTTTTTGCTGAACATTTTAT 57.169 25.926 0.00 0.00 0.00 1.40
1958 3065 8.504812 ACCTTTTTGCTGAACATTTTATTTGT 57.495 26.923 0.00 0.00 0.00 2.83
1959 3066 8.397148 ACCTTTTTGCTGAACATTTTATTTGTG 58.603 29.630 0.00 0.00 0.00 3.33
1960 3067 7.376601 CCTTTTTGCTGAACATTTTATTTGTGC 59.623 33.333 0.00 0.00 0.00 4.57
1961 3068 5.573296 TTGCTGAACATTTTATTTGTGCG 57.427 34.783 0.00 0.00 0.00 5.34
1962 3069 4.864633 TGCTGAACATTTTATTTGTGCGA 58.135 34.783 0.00 0.00 0.00 5.10
1963 3070 5.468592 TGCTGAACATTTTATTTGTGCGAT 58.531 33.333 0.00 0.00 0.00 4.58
1964 3071 5.925397 TGCTGAACATTTTATTTGTGCGATT 59.075 32.000 0.00 0.00 0.00 3.34
1965 3072 6.423302 TGCTGAACATTTTATTTGTGCGATTT 59.577 30.769 0.00 0.00 0.00 2.17
1966 3073 6.949877 GCTGAACATTTTATTTGTGCGATTTC 59.050 34.615 0.00 0.00 0.00 2.17
1967 3074 7.148755 GCTGAACATTTTATTTGTGCGATTTCT 60.149 33.333 0.00 0.00 0.00 2.52
1968 3075 9.340695 CTGAACATTTTATTTGTGCGATTTCTA 57.659 29.630 0.00 0.00 0.00 2.10
1969 3076 9.123709 TGAACATTTTATTTGTGCGATTTCTAC 57.876 29.630 0.00 0.00 0.00 2.59
1970 3077 9.123709 GAACATTTTATTTGTGCGATTTCTACA 57.876 29.630 0.00 0.00 0.00 2.74
1971 3078 9.469807 AACATTTTATTTGTGCGATTTCTACAA 57.530 25.926 0.00 0.00 32.93 2.41
1972 3079 9.638239 ACATTTTATTTGTGCGATTTCTACAAT 57.362 25.926 0.00 0.00 34.63 2.71
1975 3082 9.906660 TTTTATTTGTGCGATTTCTACAATCTT 57.093 25.926 0.00 0.00 34.63 2.40
1976 3083 9.906660 TTTATTTGTGCGATTTCTACAATCTTT 57.093 25.926 0.00 0.00 34.63 2.52
2016 3123 6.992123 CCATGTGGCTGATCTGTAGTTTTATA 59.008 38.462 1.27 0.00 0.00 0.98
2017 3124 7.663081 CCATGTGGCTGATCTGTAGTTTTATAT 59.337 37.037 1.27 0.00 0.00 0.86
2018 3125 8.715998 CATGTGGCTGATCTGTAGTTTTATATC 58.284 37.037 1.27 0.00 0.00 1.63
2051 3158 3.333219 CCTGAGGGCCAAGCTCCA 61.333 66.667 6.18 0.00 0.00 3.86
2071 3178 3.845259 TCCTGGTGGTATCGGCGC 61.845 66.667 0.00 0.00 34.23 6.53
2109 3237 4.309950 GTGGTCTCGGCACCGGTT 62.310 66.667 2.97 0.00 39.62 4.44
2126 3254 0.670854 GTTCTCCAGCTCCCAACGTC 60.671 60.000 0.00 0.00 0.00 4.34
2140 3268 1.524863 AACGTCGCTAGCACCTGACT 61.525 55.000 16.45 1.78 0.00 3.41
2142 3270 1.073216 CGTCGCTAGCACCTGACTTG 61.073 60.000 16.45 0.00 0.00 3.16
2165 3293 3.661944 CTTCCTAGCATGATGCCAGTAG 58.338 50.000 14.72 9.32 46.52 2.57
2166 3294 2.682594 TCCTAGCATGATGCCAGTAGT 58.317 47.619 14.72 0.00 46.52 2.73
2167 3295 3.844640 TCCTAGCATGATGCCAGTAGTA 58.155 45.455 14.72 0.00 46.52 1.82
2189 3317 4.399219 ACGATGATCTAGCTAGGCTTACA 58.601 43.478 20.58 13.05 40.44 2.41
2216 3344 4.523813 CGTATGGTTTCATATTCGTTGCC 58.476 43.478 0.00 0.00 38.06 4.52
2232 3360 2.134092 GCCCTAGGCCGAACTATGT 58.866 57.895 2.05 0.00 44.06 2.29
2263 3391 6.812160 TCTTCTAGCATTTTCCTCGTAAACTC 59.188 38.462 0.00 0.00 0.00 3.01
2282 3410 1.063867 TCTAGACTCCAGCTGGTACCC 60.064 57.143 31.58 18.47 36.34 3.69
2304 3432 5.701290 CCCGATGAGTTCTCTACTTTTGTTT 59.299 40.000 1.53 0.00 37.17 2.83
2358 3486 8.922058 ATTAACATGTCAAATGCTGATCTTTC 57.078 30.769 0.00 0.00 36.14 2.62
2360 3488 6.525578 ACATGTCAAATGCTGATCTTTCAT 57.474 33.333 0.00 0.00 36.14 2.57
2366 3494 6.317140 GTCAAATGCTGATCTTTCATGTAGGA 59.683 38.462 0.00 0.00 36.14 2.94
2403 3531 2.872370 GCATCAGCTTTGAACATGGTC 58.128 47.619 2.98 2.98 37.91 4.02
2405 3533 2.957402 TCAGCTTTGAACATGGTCCT 57.043 45.000 8.62 0.00 0.00 3.85
2406 3534 2.507484 TCAGCTTTGAACATGGTCCTG 58.493 47.619 8.62 8.30 0.00 3.86
2407 3535 1.068055 CAGCTTTGAACATGGTCCTGC 60.068 52.381 8.62 9.76 0.00 4.85
2408 3536 1.202976 AGCTTTGAACATGGTCCTGCT 60.203 47.619 8.62 11.92 0.00 4.24
2409 3537 2.040278 AGCTTTGAACATGGTCCTGCTA 59.960 45.455 16.98 0.00 0.00 3.49
2410 3538 3.019564 GCTTTGAACATGGTCCTGCTAT 58.980 45.455 8.62 0.00 0.00 2.97
2411 3539 3.065925 GCTTTGAACATGGTCCTGCTATC 59.934 47.826 8.62 0.00 0.00 2.08
2413 3541 5.674525 CTTTGAACATGGTCCTGCTATCTA 58.325 41.667 8.62 0.00 0.00 1.98
2414 3542 5.894298 TTGAACATGGTCCTGCTATCTAT 57.106 39.130 8.62 0.00 0.00 1.98
2415 3543 5.219343 TGAACATGGTCCTGCTATCTATG 57.781 43.478 8.62 0.00 0.00 2.23
2416 3544 4.901250 TGAACATGGTCCTGCTATCTATGA 59.099 41.667 8.62 0.00 0.00 2.15
2418 3546 6.043590 TGAACATGGTCCTGCTATCTATGAAT 59.956 38.462 8.62 0.00 0.00 2.57
2449 3577 5.371115 TGCAGTTTTACTAAAGCACATCC 57.629 39.130 0.00 0.00 0.00 3.51
2454 3582 7.246311 CAGTTTTACTAAAGCACATCCAGATG 58.754 38.462 6.09 6.09 44.15 2.90
2473 3882 6.493802 CCAGATGTGCCCTAAGAGTAAGTATA 59.506 42.308 0.00 0.00 0.00 1.47
2474 3883 7.015292 CCAGATGTGCCCTAAGAGTAAGTATAA 59.985 40.741 0.00 0.00 0.00 0.98
2489 3898 9.628746 GAGTAAGTATAATAAAGCCTAGTCAGC 57.371 37.037 0.00 0.00 0.00 4.26
2490 3899 9.144298 AGTAAGTATAATAAAGCCTAGTCAGCA 57.856 33.333 0.00 0.00 0.00 4.41
2491 3900 9.413048 GTAAGTATAATAAAGCCTAGTCAGCAG 57.587 37.037 0.00 0.00 0.00 4.24
2514 3923 6.370994 CAGGCTATAGCATCTTTCATGTAAGG 59.629 42.308 25.53 0.00 44.36 2.69
2528 3937 9.793252 CTTTCATGTAAGGAAAATCATAGTTGG 57.207 33.333 4.25 0.00 46.72 3.77
2567 3976 5.097529 GCCGGGCTATAAAACACTTTTAAC 58.902 41.667 12.87 0.00 38.48 2.01
2616 4025 2.104928 CGAGCGATACAGCAGGCA 59.895 61.111 0.00 0.00 40.15 4.75
2635 4048 2.224402 GCATTTAGCTCCTCCTACCCAG 60.224 54.545 0.00 0.00 41.15 4.45
2654 4067 1.615392 AGTCATGTGCCTTTCCTTTGC 59.385 47.619 0.00 0.00 0.00 3.68
2660 4073 0.188342 TGCCTTTCCTTTGCCTCCTT 59.812 50.000 0.00 0.00 0.00 3.36
2677 4090 4.400251 CCTCCTTCAGCATGCAAGAATTAA 59.600 41.667 21.98 10.19 34.76 1.40
2678 4091 5.105635 CCTCCTTCAGCATGCAAGAATTAAA 60.106 40.000 21.98 8.07 34.76 1.52
2679 4092 6.406624 CCTCCTTCAGCATGCAAGAATTAAAT 60.407 38.462 21.98 0.00 34.76 1.40
2680 4093 6.334989 TCCTTCAGCATGCAAGAATTAAATG 58.665 36.000 21.98 9.88 34.76 2.32
2681 4094 5.522460 CCTTCAGCATGCAAGAATTAAATGG 59.478 40.000 21.98 14.50 34.76 3.16
2682 4095 5.918426 TCAGCATGCAAGAATTAAATGGA 57.082 34.783 21.98 0.00 34.76 3.41
2683 4096 6.474140 TCAGCATGCAAGAATTAAATGGAT 57.526 33.333 21.98 0.00 34.76 3.41
2684 4097 7.585579 TCAGCATGCAAGAATTAAATGGATA 57.414 32.000 21.98 0.00 34.76 2.59
2685 4098 7.654568 TCAGCATGCAAGAATTAAATGGATAG 58.345 34.615 21.98 0.00 34.76 2.08
2686 4099 6.365247 CAGCATGCAAGAATTAAATGGATAGC 59.635 38.462 21.98 0.00 0.00 2.97
2687 4100 5.636543 GCATGCAAGAATTAAATGGATAGCC 59.363 40.000 14.21 0.00 0.00 3.93
2699 4112 3.423539 TGGATAGCCAATGATACAGCC 57.576 47.619 0.00 0.00 42.49 4.85
2700 4113 2.710471 TGGATAGCCAATGATACAGCCA 59.290 45.455 0.00 0.00 42.49 4.75
2701 4114 3.331591 TGGATAGCCAATGATACAGCCAT 59.668 43.478 0.00 0.00 42.49 4.40
2702 4115 4.202599 TGGATAGCCAATGATACAGCCATT 60.203 41.667 0.00 0.00 42.49 3.16
2703 4116 4.397417 GGATAGCCAATGATACAGCCATTC 59.603 45.833 0.00 0.00 32.40 2.67
2704 4117 3.589951 AGCCAATGATACAGCCATTCT 57.410 42.857 0.00 0.00 32.40 2.40
2705 4118 4.712051 AGCCAATGATACAGCCATTCTA 57.288 40.909 0.00 0.00 32.40 2.10
2706 4119 4.649692 AGCCAATGATACAGCCATTCTAG 58.350 43.478 0.00 0.00 32.40 2.43
2707 4120 4.103785 AGCCAATGATACAGCCATTCTAGT 59.896 41.667 0.00 0.00 32.40 2.57
2708 4121 5.307976 AGCCAATGATACAGCCATTCTAGTA 59.692 40.000 0.00 0.00 32.40 1.82
2709 4122 6.013032 AGCCAATGATACAGCCATTCTAGTAT 60.013 38.462 0.00 0.00 32.40 2.12
2710 4123 6.656693 GCCAATGATACAGCCATTCTAGTATT 59.343 38.462 0.00 0.00 32.40 1.89
2711 4124 7.824289 GCCAATGATACAGCCATTCTAGTATTA 59.176 37.037 0.00 0.00 32.40 0.98
2712 4125 9.896645 CCAATGATACAGCCATTCTAGTATTAT 57.103 33.333 0.00 0.00 32.40 1.28
2719 4132 7.560368 ACAGCCATTCTAGTATTATATGAGCC 58.440 38.462 0.00 0.00 0.00 4.70
2720 4133 7.401493 ACAGCCATTCTAGTATTATATGAGCCT 59.599 37.037 0.00 0.00 0.00 4.58
2721 4134 8.918116 CAGCCATTCTAGTATTATATGAGCCTA 58.082 37.037 0.00 0.00 0.00 3.93
2722 4135 8.919145 AGCCATTCTAGTATTATATGAGCCTAC 58.081 37.037 0.00 0.00 0.00 3.18
2723 4136 8.696374 GCCATTCTAGTATTATATGAGCCTACA 58.304 37.037 0.00 0.00 0.00 2.74
2742 4155 5.952347 CCTACATATGGGCTATACTCACTCA 59.048 44.000 7.80 0.00 0.00 3.41
2772 4185 6.530181 CGGTTTATAGGGCTCAATTCAAAAAC 59.470 38.462 0.00 0.00 0.00 2.43
2811 4224 8.643324 GGTAGATGGTGAGTGATAGAATACTTT 58.357 37.037 0.00 0.00 0.00 2.66
2851 4264 7.637631 ACACCCAATTAATGCTTTTGTTTTT 57.362 28.000 0.00 0.00 0.00 1.94
2852 4265 8.738645 ACACCCAATTAATGCTTTTGTTTTTA 57.261 26.923 0.00 0.00 0.00 1.52
2909 4322 9.247126 TGCAATACATGAATGCATAAAATACAC 57.753 29.630 16.73 0.00 44.52 2.90
2982 4395 2.954318 GGAATCTGAACATGTGATGGGG 59.046 50.000 0.00 0.00 33.60 4.96
2994 4407 2.632028 TGTGATGGGGAACAACCAAATG 59.368 45.455 0.00 0.00 42.17 2.32
3009 4422 7.917003 ACAACCAAATGGAGCCTTATAAAATT 58.083 30.769 6.42 0.00 38.94 1.82
3060 4473 3.697619 AAACCGGAAAGGAAGGAGTAG 57.302 47.619 9.46 0.00 45.00 2.57
3063 4476 2.766828 ACCGGAAAGGAAGGAGTAGATG 59.233 50.000 9.46 0.00 45.00 2.90
3064 4477 3.031736 CCGGAAAGGAAGGAGTAGATGA 58.968 50.000 0.00 0.00 45.00 2.92
3065 4478 3.181474 CCGGAAAGGAAGGAGTAGATGAC 60.181 52.174 0.00 0.00 45.00 3.06
3066 4479 3.447586 CGGAAAGGAAGGAGTAGATGACA 59.552 47.826 0.00 0.00 0.00 3.58
3067 4480 4.100189 CGGAAAGGAAGGAGTAGATGACAT 59.900 45.833 0.00 0.00 0.00 3.06
3068 4481 5.363939 GGAAAGGAAGGAGTAGATGACATG 58.636 45.833 0.00 0.00 0.00 3.21
3070 4483 2.703007 AGGAAGGAGTAGATGACATGGC 59.297 50.000 0.00 0.00 0.00 4.40
3071 4484 2.435805 GGAAGGAGTAGATGACATGGCA 59.564 50.000 2.18 2.18 0.00 4.92
3072 4485 3.462021 GAAGGAGTAGATGACATGGCAC 58.538 50.000 1.45 0.00 0.00 5.01
3073 4486 2.756907 AGGAGTAGATGACATGGCACT 58.243 47.619 1.45 6.11 0.00 4.40
3074 4487 3.916035 AGGAGTAGATGACATGGCACTA 58.084 45.455 1.45 4.99 0.00 2.74
3075 4488 3.639094 AGGAGTAGATGACATGGCACTAC 59.361 47.826 23.18 23.18 35.23 2.73
3076 4489 3.639094 GGAGTAGATGACATGGCACTACT 59.361 47.826 28.88 28.88 43.86 2.57
3077 4490 4.827835 GGAGTAGATGACATGGCACTACTA 59.172 45.833 28.69 19.47 42.11 1.82
3078 4491 5.278561 GGAGTAGATGACATGGCACTACTAC 60.279 48.000 28.69 26.96 42.11 2.73
3079 4492 5.201243 AGTAGATGACATGGCACTACTACA 58.799 41.667 28.06 6.40 40.88 2.74
3080 4493 4.662468 AGATGACATGGCACTACTACAG 57.338 45.455 1.45 0.00 0.00 2.74
3082 4495 5.201243 AGATGACATGGCACTACTACAGTA 58.799 41.667 1.45 0.00 34.98 2.74
3084 4497 5.068234 TGACATGGCACTACTACAGTAAC 57.932 43.478 0.00 0.00 34.98 2.50
3085 4498 4.525100 TGACATGGCACTACTACAGTAACA 59.475 41.667 0.00 0.00 34.98 2.41
3087 4500 4.527038 ACATGGCACTACTACAGTAACAGT 59.473 41.667 0.00 0.00 34.98 3.55
3090 7333 4.831155 TGGCACTACTACAGTAACAGTCTT 59.169 41.667 0.00 0.00 34.98 3.01
3093 7336 6.805760 GGCACTACTACAGTAACAGTCTTTAC 59.194 42.308 0.00 0.00 34.98 2.01
3109 7352 7.124298 ACAGTCTTTACTATTGACCATGCTCTA 59.876 37.037 0.00 0.00 33.48 2.43
3113 7356 9.197306 TCTTTACTATTGACCATGCTCTAAGTA 57.803 33.333 0.00 0.00 0.00 2.24
3114 7357 9.988815 CTTTACTATTGACCATGCTCTAAGTAT 57.011 33.333 0.00 0.00 0.00 2.12
3117 7360 6.708054 ACTATTGACCATGCTCTAAGTATTGC 59.292 38.462 0.00 0.00 0.00 3.56
3119 7362 4.191544 TGACCATGCTCTAAGTATTGCAC 58.808 43.478 0.00 0.00 38.29 4.57
3120 7363 4.191544 GACCATGCTCTAAGTATTGCACA 58.808 43.478 0.00 0.00 38.29 4.57
3121 7364 4.785301 ACCATGCTCTAAGTATTGCACAT 58.215 39.130 0.00 0.00 38.29 3.21
3123 7366 6.537355 ACCATGCTCTAAGTATTGCACATAT 58.463 36.000 0.00 0.00 38.29 1.78
3124 7367 7.679783 ACCATGCTCTAAGTATTGCACATATA 58.320 34.615 0.00 0.00 38.29 0.86
3126 7369 8.663025 CCATGCTCTAAGTATTGCACATATAAG 58.337 37.037 0.00 0.00 38.29 1.73
3127 7370 9.212641 CATGCTCTAAGTATTGCACATATAAGT 57.787 33.333 0.00 0.00 38.29 2.24
3128 7371 8.818141 TGCTCTAAGTATTGCACATATAAGTC 57.182 34.615 0.00 0.00 0.00 3.01
3130 7373 8.091449 GCTCTAAGTATTGCACATATAAGTCCT 58.909 37.037 0.00 0.00 0.00 3.85
3134 7377 8.553459 AAGTATTGCACATATAAGTCCTATGC 57.447 34.615 0.00 0.00 31.12 3.14
3136 7379 4.972751 TGCACATATAAGTCCTATGCCA 57.027 40.909 0.00 0.00 31.12 4.92
3137 7380 5.503634 TGCACATATAAGTCCTATGCCAT 57.496 39.130 0.00 0.00 31.12 4.40
3138 7381 5.879763 TGCACATATAAGTCCTATGCCATT 58.120 37.500 0.00 0.00 31.12 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 9.921637 ACAACGGTGTATTTCATCATTAAAATT 57.078 25.926 2.99 0.00 35.72 1.82
10 11 9.921637 AACAACGGTGTATTTCATCATTAAAAT 57.078 25.926 6.49 0.00 36.80 1.82
11 12 9.400638 GAACAACGGTGTATTTCATCATTAAAA 57.599 29.630 6.49 0.00 36.80 1.52
12 13 8.568794 TGAACAACGGTGTATTTCATCATTAAA 58.431 29.630 6.49 0.00 36.80 1.52
13 14 8.100508 TGAACAACGGTGTATTTCATCATTAA 57.899 30.769 6.49 0.00 36.80 1.40
14 15 7.674471 TGAACAACGGTGTATTTCATCATTA 57.326 32.000 6.49 0.00 36.80 1.90
15 16 6.567687 TGAACAACGGTGTATTTCATCATT 57.432 33.333 6.49 0.00 36.80 2.57
16 17 6.567687 TTGAACAACGGTGTATTTCATCAT 57.432 33.333 6.49 0.00 36.80 2.45
17 18 6.429692 AGATTGAACAACGGTGTATTTCATCA 59.570 34.615 6.49 2.23 36.80 3.07
18 19 6.842163 AGATTGAACAACGGTGTATTTCATC 58.158 36.000 6.49 7.22 36.80 2.92
19 20 6.817765 AGATTGAACAACGGTGTATTTCAT 57.182 33.333 6.49 0.00 36.80 2.57
20 21 6.932400 AGTAGATTGAACAACGGTGTATTTCA 59.068 34.615 6.49 4.03 36.80 2.69
21 22 7.360575 AGTAGATTGAACAACGGTGTATTTC 57.639 36.000 6.49 0.64 36.80 2.17
22 23 8.836268 TTAGTAGATTGAACAACGGTGTATTT 57.164 30.769 6.49 0.00 36.80 1.40
23 24 8.836268 TTTAGTAGATTGAACAACGGTGTATT 57.164 30.769 6.49 0.00 36.80 1.89
26 27 9.444600 AATATTTAGTAGATTGAACAACGGTGT 57.555 29.630 0.00 0.00 40.75 4.16
58 59 9.573133 GCTACAAAAACATAATTTGAGCTGTAT 57.427 29.630 0.00 0.00 39.56 2.29
59 60 8.572185 TGCTACAAAAACATAATTTGAGCTGTA 58.428 29.630 16.56 0.00 39.56 2.74
60 61 7.382218 GTGCTACAAAAACATAATTTGAGCTGT 59.618 33.333 16.56 0.00 39.56 4.40
61 62 7.381948 TGTGCTACAAAAACATAATTTGAGCTG 59.618 33.333 16.56 0.00 39.56 4.24
62 63 7.432869 TGTGCTACAAAAACATAATTTGAGCT 58.567 30.769 16.56 0.00 39.56 4.09
63 64 7.636259 TGTGCTACAAAAACATAATTTGAGC 57.364 32.000 6.05 9.92 39.56 4.26
64 65 8.164153 GCATGTGCTACAAAAACATAATTTGAG 58.836 33.333 6.05 1.55 38.27 3.02
65 66 7.654923 TGCATGTGCTACAAAAACATAATTTGA 59.345 29.630 6.55 0.00 39.60 2.69
66 67 7.794880 TGCATGTGCTACAAAAACATAATTTG 58.205 30.769 6.55 0.00 41.18 2.32
67 68 7.959689 TGCATGTGCTACAAAAACATAATTT 57.040 28.000 6.55 0.00 42.66 1.82
68 69 8.550710 AATGCATGTGCTACAAAAACATAATT 57.449 26.923 0.00 0.00 42.66 1.40
69 70 9.820725 ATAATGCATGTGCTACAAAAACATAAT 57.179 25.926 0.00 0.00 42.66 1.28
70 71 9.650539 AATAATGCATGTGCTACAAAAACATAA 57.349 25.926 0.00 0.00 42.66 1.90
71 72 9.299963 GAATAATGCATGTGCTACAAAAACATA 57.700 29.630 0.00 0.00 42.66 2.29
72 73 7.818446 TGAATAATGCATGTGCTACAAAAACAT 59.182 29.630 0.00 0.00 42.66 2.71
73 74 7.116090 GTGAATAATGCATGTGCTACAAAAACA 59.884 33.333 0.00 0.00 42.66 2.83
74 75 7.329226 AGTGAATAATGCATGTGCTACAAAAAC 59.671 33.333 0.00 0.00 42.66 2.43
75 76 7.377398 AGTGAATAATGCATGTGCTACAAAAA 58.623 30.769 0.00 0.00 42.66 1.94
76 77 6.923012 AGTGAATAATGCATGTGCTACAAAA 58.077 32.000 0.00 0.00 42.66 2.44
77 78 6.513806 AGTGAATAATGCATGTGCTACAAA 57.486 33.333 0.00 0.00 42.66 2.83
78 79 7.806409 ATAGTGAATAATGCATGTGCTACAA 57.194 32.000 0.00 0.00 42.66 2.41
79 80 8.900983 TTATAGTGAATAATGCATGTGCTACA 57.099 30.769 0.00 0.00 42.66 2.74
82 83 8.906867 ACTTTTATAGTGAATAATGCATGTGCT 58.093 29.630 0.00 0.00 37.58 4.40
83 84 9.173939 GACTTTTATAGTGAATAATGCATGTGC 57.826 33.333 0.00 0.00 37.17 4.57
121 122 9.979578 TGCTTTGATTTGAGCTTTATAGAAAAA 57.020 25.926 0.00 0.00 39.60 1.94
131 132 8.255206 TGATGAAATATGCTTTGATTTGAGCTT 58.745 29.630 0.00 0.00 39.60 3.74
162 163 7.040892 TGAGTGTATACTACGACTGTGAAAAGT 60.041 37.037 4.17 0.00 37.25 2.66
167 168 6.806388 TTTGAGTGTATACTACGACTGTGA 57.194 37.500 4.17 0.00 37.25 3.58
172 173 8.532341 CATGAACATTTGAGTGTATACTACGAC 58.468 37.037 4.17 0.00 37.25 4.34
173 174 8.248253 ACATGAACATTTGAGTGTATACTACGA 58.752 33.333 0.00 0.00 37.25 3.43
175 176 9.151471 ACACATGAACATTTGAGTGTATACTAC 57.849 33.333 0.00 1.23 38.32 2.73
269 273 3.055240 AGAGTGGATTTCTTGCTCCTGAG 60.055 47.826 0.00 0.00 32.47 3.35
270 274 2.909006 AGAGTGGATTTCTTGCTCCTGA 59.091 45.455 0.00 0.00 32.47 3.86
271 275 3.269178 GAGAGTGGATTTCTTGCTCCTG 58.731 50.000 0.00 0.00 32.47 3.86
272 276 2.238395 GGAGAGTGGATTTCTTGCTCCT 59.762 50.000 0.00 0.00 37.91 3.69
302 306 0.673333 GGCCCCAAAAGCAATTTCCG 60.673 55.000 0.00 0.00 0.00 4.30
384 388 9.261035 AGATGTAGTATCATCCCTAGGTTTATG 57.739 37.037 8.29 8.66 43.46 1.90
403 408 9.529325 TTATCATGAAAACTTACGGAGATGTAG 57.471 33.333 0.00 0.00 0.00 2.74
441 446 8.370493 TCATGTCTTTTCTCTGTAGTTTGAAG 57.630 34.615 0.00 0.00 0.00 3.02
448 453 9.956720 AAACAAAATCATGTCTTTTCTCTGTAG 57.043 29.630 0.00 0.00 31.81 2.74
487 492 7.841915 TCATGCTTGAATACGATTTTCTGTA 57.158 32.000 0.00 0.00 0.00 2.74
529 534 6.691754 ACACATGAACATTGAGTTGTGTAA 57.308 33.333 0.00 0.00 43.98 2.41
605 612 2.026822 TCTCTCATGGAGCCCTGTTTTC 60.027 50.000 6.38 0.00 41.60 2.29
702 746 1.305201 GCACTCTTCAACCGGTTTGA 58.695 50.000 19.55 15.72 42.83 2.69
703 747 0.310854 GGCACTCTTCAACCGGTTTG 59.689 55.000 19.55 13.69 36.42 2.93
704 748 0.106918 TGGCACTCTTCAACCGGTTT 60.107 50.000 19.55 0.00 0.00 3.27
734 778 5.975939 GTCTAATCGAAGGCGTATTTACTGT 59.024 40.000 0.00 0.00 38.98 3.55
788 835 9.610104 TGGGTAGCAGATAGGTCTAATATTTTA 57.390 33.333 0.00 0.00 32.09 1.52
793 840 7.178628 GTGAATGGGTAGCAGATAGGTCTAATA 59.821 40.741 0.00 0.00 32.09 0.98
802 849 5.185454 CAAGTTGTGAATGGGTAGCAGATA 58.815 41.667 0.00 0.00 0.00 1.98
838 885 3.665675 ATCCTGGCTGTCCGTTCGC 62.666 63.158 0.00 0.00 34.14 4.70
921 968 3.823330 CCGAAGTCTCCGGGTCCG 61.823 72.222 0.00 1.86 43.05 4.79
942 989 3.506096 AGCGGCGTCTTCGATCGA 61.506 61.111 15.15 15.15 39.71 3.59
943 990 3.315521 CAGCGGCGTCTTCGATCG 61.316 66.667 9.36 9.36 39.71 3.69
944 991 3.621394 GCAGCGGCGTCTTCGATC 61.621 66.667 9.37 0.00 39.71 3.69
1056 1148 3.309388 CAGAGCGATAATGGTTAGACGG 58.691 50.000 0.00 0.00 0.00 4.79
1085 1177 2.125673 GCGGCGCTTGAAGGTCTA 60.126 61.111 26.86 0.00 0.00 2.59
1196 1288 0.881600 TCGATTGATGCAGCGGGATG 60.882 55.000 0.00 0.00 0.00 3.51
1221 1313 2.554370 TAGGTTTTGGACAAGGACGG 57.446 50.000 0.00 0.00 0.00 4.79
1239 1331 4.442893 CCCAGCGTAATCAACAGAAGGATA 60.443 45.833 0.00 0.00 0.00 2.59
1240 1332 3.535561 CCAGCGTAATCAACAGAAGGAT 58.464 45.455 0.00 0.00 0.00 3.24
1241 1333 2.354704 CCCAGCGTAATCAACAGAAGGA 60.355 50.000 0.00 0.00 0.00 3.36
1242 1334 2.009774 CCCAGCGTAATCAACAGAAGG 58.990 52.381 0.00 0.00 0.00 3.46
1244 1336 1.349688 ACCCCAGCGTAATCAACAGAA 59.650 47.619 0.00 0.00 0.00 3.02
1246 1338 1.821216 AACCCCAGCGTAATCAACAG 58.179 50.000 0.00 0.00 0.00 3.16
1247 1339 2.156098 GAAACCCCAGCGTAATCAACA 58.844 47.619 0.00 0.00 0.00 3.33
1248 1340 2.433436 AGAAACCCCAGCGTAATCAAC 58.567 47.619 0.00 0.00 0.00 3.18
1250 1342 2.817258 CAAAGAAACCCCAGCGTAATCA 59.183 45.455 0.00 0.00 0.00 2.57
1251 1343 2.163613 CCAAAGAAACCCCAGCGTAATC 59.836 50.000 0.00 0.00 0.00 1.75
1252 1344 2.167662 CCAAAGAAACCCCAGCGTAAT 58.832 47.619 0.00 0.00 0.00 1.89
1253 1345 1.133730 ACCAAAGAAACCCCAGCGTAA 60.134 47.619 0.00 0.00 0.00 3.18
1254 1346 0.475044 ACCAAAGAAACCCCAGCGTA 59.525 50.000 0.00 0.00 0.00 4.42
1257 1349 0.759060 ACCACCAAAGAAACCCCAGC 60.759 55.000 0.00 0.00 0.00 4.85
1259 1351 1.007238 TGAACCACCAAAGAAACCCCA 59.993 47.619 0.00 0.00 0.00 4.96
1260 1352 1.686587 CTGAACCACCAAAGAAACCCC 59.313 52.381 0.00 0.00 0.00 4.95
1262 1354 2.361119 GTCCTGAACCACCAAAGAAACC 59.639 50.000 0.00 0.00 0.00 3.27
1263 1355 3.020984 TGTCCTGAACCACCAAAGAAAC 58.979 45.455 0.00 0.00 0.00 2.78
1292 1390 3.202151 TGTTCCTCACCTTGAACCTCTTT 59.798 43.478 0.00 0.00 40.06 2.52
1325 1423 3.008157 CCTTGATATCTCTCATGCCTGCT 59.992 47.826 3.98 0.00 0.00 4.24
1386 2406 7.603024 AGTTAAGAACCGGATAGAAGAAAACAG 59.397 37.037 9.46 0.00 0.00 3.16
1398 2418 3.868754 GCTCCAACAGTTAAGAACCGGAT 60.869 47.826 9.46 0.00 0.00 4.18
1416 2439 1.663074 GATCGGCGATCACTGCTCC 60.663 63.158 37.19 14.22 38.77 4.70
1427 2450 0.093026 GACAAACAGTTCGATCGGCG 59.907 55.000 16.41 0.00 42.69 6.46
1436 2459 1.202290 CGCCTTGCAAGACAAACAGTT 60.202 47.619 28.05 0.00 37.96 3.16
1437 2460 0.381801 CGCCTTGCAAGACAAACAGT 59.618 50.000 28.05 0.00 37.96 3.55
1438 2461 0.662619 TCGCCTTGCAAGACAAACAG 59.337 50.000 28.05 10.00 37.96 3.16
1439 2462 1.098869 TTCGCCTTGCAAGACAAACA 58.901 45.000 28.05 3.60 37.96 2.83
1440 2463 2.202295 TTTCGCCTTGCAAGACAAAC 57.798 45.000 28.05 10.15 37.96 2.93
1441 2464 2.949451 TTTTCGCCTTGCAAGACAAA 57.051 40.000 28.05 18.15 37.96 2.83
1442 2465 3.451141 AATTTTCGCCTTGCAAGACAA 57.549 38.095 28.05 13.47 36.62 3.18
1443 2466 3.451141 AAATTTTCGCCTTGCAAGACA 57.549 38.095 28.05 7.91 0.00 3.41
1444 2467 5.898630 TTAAAATTTTCGCCTTGCAAGAC 57.101 34.783 28.05 15.94 0.00 3.01
1446 2469 7.329582 CGATATTAAAATTTTCGCCTTGCAAG 58.670 34.615 19.93 19.93 0.00 4.01
1447 2470 6.237701 GCGATATTAAAATTTTCGCCTTGCAA 60.238 34.615 18.81 0.00 38.91 4.08
1449 2472 5.231147 TGCGATATTAAAATTTTCGCCTTGC 59.769 36.000 23.88 15.77 43.32 4.01
1450 2473 6.291585 GGTGCGATATTAAAATTTTCGCCTTG 60.292 38.462 23.88 8.18 43.32 3.61
1452 2475 5.067283 AGGTGCGATATTAAAATTTTCGCCT 59.933 36.000 23.88 17.57 43.32 5.52
1453 2476 5.278604 AGGTGCGATATTAAAATTTTCGCC 58.721 37.500 23.88 16.02 43.32 5.54
1454 2477 6.199393 AGAGGTGCGATATTAAAATTTTCGC 58.801 36.000 21.44 21.44 44.08 4.70
1455 2478 8.122952 AGAAGAGGTGCGATATTAAAATTTTCG 58.877 33.333 6.72 5.78 0.00 3.46
1456 2479 9.439537 GAGAAGAGGTGCGATATTAAAATTTTC 57.560 33.333 6.72 0.00 0.00 2.29
1457 2480 9.178758 AGAGAAGAGGTGCGATATTAAAATTTT 57.821 29.630 8.75 8.75 0.00 1.82
1458 2481 8.616076 CAGAGAAGAGGTGCGATATTAAAATTT 58.384 33.333 0.00 0.00 0.00 1.82
1459 2482 7.987458 TCAGAGAAGAGGTGCGATATTAAAATT 59.013 33.333 0.00 0.00 0.00 1.82
1460 2483 7.500992 TCAGAGAAGAGGTGCGATATTAAAAT 58.499 34.615 0.00 0.00 0.00 1.82
1461 2484 6.873997 TCAGAGAAGAGGTGCGATATTAAAA 58.126 36.000 0.00 0.00 0.00 1.52
1464 2487 6.568653 CGAATCAGAGAAGAGGTGCGATATTA 60.569 42.308 0.00 0.00 0.00 0.98
1469 2492 1.133216 CGAATCAGAGAAGAGGTGCGA 59.867 52.381 0.00 0.00 0.00 5.10
1470 2493 1.554392 CGAATCAGAGAAGAGGTGCG 58.446 55.000 0.00 0.00 0.00 5.34
1480 2503 1.998315 CAACTCACTGGCGAATCAGAG 59.002 52.381 7.65 0.00 38.11 3.35
1487 2510 0.249868 CACTTCCAACTCACTGGCGA 60.250 55.000 0.00 0.00 36.32 5.54
1491 2514 2.398498 CTCGACACTTCCAACTCACTG 58.602 52.381 0.00 0.00 0.00 3.66
1492 2515 1.269831 GCTCGACACTTCCAACTCACT 60.270 52.381 0.00 0.00 0.00 3.41
1500 2523 0.171455 ATCACGAGCTCGACACTTCC 59.829 55.000 40.58 0.00 43.02 3.46
1501 2524 1.983972 AATCACGAGCTCGACACTTC 58.016 50.000 40.58 0.00 43.02 3.01
1511 2618 3.360765 CGTCTATTACGCAAATCACGAGC 60.361 47.826 0.00 0.00 46.10 5.03
1532 2639 0.738389 ACCTGCAACCAAAACACTCG 59.262 50.000 0.00 0.00 0.00 4.18
1533 2640 2.959507 AACCTGCAACCAAAACACTC 57.040 45.000 0.00 0.00 0.00 3.51
1541 2648 1.588674 CAGAACGTAACCTGCAACCA 58.411 50.000 0.00 0.00 0.00 3.67
1563 2670 8.457261 CAATAATGCTCCAGGATATAAAGCTTC 58.543 37.037 0.00 0.00 34.11 3.86
1632 2739 1.289800 GGTTCTTCCGGTTCTCACGC 61.290 60.000 0.00 0.00 0.00 5.34
1698 2805 7.395489 ACATAGTAGAAAGGAAGGAAACTCGTA 59.605 37.037 0.00 0.00 42.68 3.43
1712 2819 7.530010 CACCACCAATTGAACATAGTAGAAAG 58.470 38.462 7.12 0.00 0.00 2.62
1713 2820 6.072175 GCACCACCAATTGAACATAGTAGAAA 60.072 38.462 7.12 0.00 0.00 2.52
1714 2821 5.414454 GCACCACCAATTGAACATAGTAGAA 59.586 40.000 7.12 0.00 0.00 2.10
1715 2822 4.941263 GCACCACCAATTGAACATAGTAGA 59.059 41.667 7.12 0.00 0.00 2.59
1716 2823 4.943705 AGCACCACCAATTGAACATAGTAG 59.056 41.667 7.12 0.00 0.00 2.57
1717 2824 4.699735 CAGCACCACCAATTGAACATAGTA 59.300 41.667 7.12 0.00 0.00 1.82
1718 2825 3.507233 CAGCACCACCAATTGAACATAGT 59.493 43.478 7.12 0.00 0.00 2.12
1719 2826 3.674138 GCAGCACCACCAATTGAACATAG 60.674 47.826 7.12 0.00 0.00 2.23
1720 2827 2.230992 GCAGCACCACCAATTGAACATA 59.769 45.455 7.12 0.00 0.00 2.29
1721 2828 1.001181 GCAGCACCACCAATTGAACAT 59.999 47.619 7.12 0.00 0.00 2.71
1724 2831 1.412079 AAGCAGCACCACCAATTGAA 58.588 45.000 7.12 0.00 0.00 2.69
1727 2834 2.164219 CGATTAAGCAGCACCACCAATT 59.836 45.455 0.00 0.00 0.00 2.32
1733 2840 1.002746 TGCCGATTAAGCAGCACCA 60.003 52.632 0.00 0.00 34.69 4.17
1734 2841 3.903783 TGCCGATTAAGCAGCACC 58.096 55.556 0.00 0.00 34.69 5.01
1748 2855 2.704572 ACTCTTTGACTACATGCTGCC 58.295 47.619 0.00 0.00 0.00 4.85
1750 2857 4.067896 ACCAACTCTTTGACTACATGCTG 58.932 43.478 0.00 0.00 34.24 4.41
1752 2859 5.238583 AGTACCAACTCTTTGACTACATGC 58.761 41.667 0.00 0.00 34.24 4.06
1767 2874 6.986817 AGATTGCATACAGTATGAGTACCAAC 59.013 38.462 22.72 11.27 39.69 3.77
1774 2881 9.486497 AGTGATTAAGATTGCATACAGTATGAG 57.514 33.333 22.72 0.00 39.69 2.90
1785 2892 5.874810 ACGCTCTAAAGTGATTAAGATTGCA 59.125 36.000 0.00 0.00 36.80 4.08
1787 2894 7.148407 ACCAACGCTCTAAAGTGATTAAGATTG 60.148 37.037 0.00 0.00 36.80 2.67
1789 2896 6.407202 ACCAACGCTCTAAAGTGATTAAGAT 58.593 36.000 0.00 0.00 36.80 2.40
1790 2897 5.790593 ACCAACGCTCTAAAGTGATTAAGA 58.209 37.500 0.00 0.00 36.80 2.10
1792 2899 6.694447 ACTACCAACGCTCTAAAGTGATTAA 58.306 36.000 0.00 0.00 36.80 1.40
1793 2900 6.276832 ACTACCAACGCTCTAAAGTGATTA 57.723 37.500 0.00 0.00 36.80 1.75
1794 2901 5.148651 ACTACCAACGCTCTAAAGTGATT 57.851 39.130 0.00 0.00 36.80 2.57
1795 2902 4.803098 ACTACCAACGCTCTAAAGTGAT 57.197 40.909 0.00 0.00 36.80 3.06
1796 2903 5.909621 ATACTACCAACGCTCTAAAGTGA 57.090 39.130 0.00 0.00 36.80 3.41
1797 2904 9.343103 CATATATACTACCAACGCTCTAAAGTG 57.657 37.037 0.00 0.00 39.02 3.16
1798 2905 9.075678 ACATATATACTACCAACGCTCTAAAGT 57.924 33.333 0.00 0.00 0.00 2.66
1803 2910 9.676861 TGTATACATATATACTACCAACGCTCT 57.323 33.333 0.08 0.00 42.57 4.09
1832 2939 9.791820 CATGCTTGTATGAAGATTCATGTTTTA 57.208 29.630 16.49 0.00 46.68 1.52
1833 2940 8.525316 TCATGCTTGTATGAAGATTCATGTTTT 58.475 29.630 16.49 0.00 46.68 2.43
1834 2941 8.058667 TCATGCTTGTATGAAGATTCATGTTT 57.941 30.769 16.49 0.00 46.68 2.83
1835 2942 7.634671 TCATGCTTGTATGAAGATTCATGTT 57.365 32.000 16.49 0.00 46.68 2.71
1836 2943 7.634671 TTCATGCTTGTATGAAGATTCATGT 57.365 32.000 16.49 0.00 46.68 3.21
1837 2944 8.568794 AGATTCATGCTTGTATGAAGATTCATG 58.431 33.333 16.49 2.98 46.70 3.07
1838 2945 8.693120 AGATTCATGCTTGTATGAAGATTCAT 57.307 30.769 16.53 12.40 46.70 2.57
1839 2946 8.515695 AAGATTCATGCTTGTATGAAGATTCA 57.484 30.769 16.53 0.00 46.70 2.57
1840 2947 8.838365 AGAAGATTCATGCTTGTATGAAGATTC 58.162 33.333 20.39 20.39 46.70 2.52
1841 2948 8.749026 AGAAGATTCATGCTTGTATGAAGATT 57.251 30.769 16.53 13.52 46.70 2.40
1842 2949 8.749026 AAGAAGATTCATGCTTGTATGAAGAT 57.251 30.769 16.53 7.48 46.70 2.40
1843 2950 9.102757 GTAAGAAGATTCATGCTTGTATGAAGA 57.897 33.333 16.53 0.00 46.70 2.87
1844 2951 8.886719 TGTAAGAAGATTCATGCTTGTATGAAG 58.113 33.333 16.53 0.00 46.70 3.02
1846 2953 8.791327 TTGTAAGAAGATTCATGCTTGTATGA 57.209 30.769 0.00 0.00 35.38 2.15
1849 2956 8.817100 CGTATTGTAAGAAGATTCATGCTTGTA 58.183 33.333 0.00 0.00 0.00 2.41
1850 2957 7.334421 ACGTATTGTAAGAAGATTCATGCTTGT 59.666 33.333 0.00 0.00 0.00 3.16
1851 2958 7.688372 ACGTATTGTAAGAAGATTCATGCTTG 58.312 34.615 0.00 0.00 0.00 4.01
1852 2959 7.766278 AGACGTATTGTAAGAAGATTCATGCTT 59.234 33.333 0.00 0.00 0.00 3.91
1853 2960 7.268586 AGACGTATTGTAAGAAGATTCATGCT 58.731 34.615 0.00 0.00 0.00 3.79
1854 2961 7.470289 AGACGTATTGTAAGAAGATTCATGC 57.530 36.000 0.00 0.00 0.00 4.06
1885 2992 7.868415 GCACTAAATATTACTTCCTCGTCTCAT 59.132 37.037 0.00 0.00 0.00 2.90
1886 2993 7.147966 TGCACTAAATATTACTTCCTCGTCTCA 60.148 37.037 0.00 0.00 0.00 3.27
1887 2994 7.201145 TGCACTAAATATTACTTCCTCGTCTC 58.799 38.462 0.00 0.00 0.00 3.36
1888 2995 7.108841 TGCACTAAATATTACTTCCTCGTCT 57.891 36.000 0.00 0.00 0.00 4.18
1889 2996 7.766219 TTGCACTAAATATTACTTCCTCGTC 57.234 36.000 0.00 0.00 0.00 4.20
1890 2997 7.201496 CGTTTGCACTAAATATTACTTCCTCGT 60.201 37.037 0.00 0.00 0.00 4.18
1891 2998 7.009815 TCGTTTGCACTAAATATTACTTCCTCG 59.990 37.037 0.00 0.00 0.00 4.63
1892 2999 8.193250 TCGTTTGCACTAAATATTACTTCCTC 57.807 34.615 0.00 0.00 0.00 3.71
1893 3000 8.732746 ATCGTTTGCACTAAATATTACTTCCT 57.267 30.769 0.00 0.00 0.00 3.36
1894 3001 8.068380 GGATCGTTTGCACTAAATATTACTTCC 58.932 37.037 0.00 0.00 0.00 3.46
1895 3002 8.609176 TGGATCGTTTGCACTAAATATTACTTC 58.391 33.333 0.00 0.00 0.00 3.01
1896 3003 8.500753 TGGATCGTTTGCACTAAATATTACTT 57.499 30.769 0.00 0.00 0.00 2.24
1897 3004 8.500753 TTGGATCGTTTGCACTAAATATTACT 57.499 30.769 0.00 0.00 0.00 2.24
1898 3005 9.006215 GTTTGGATCGTTTGCACTAAATATTAC 57.994 33.333 0.00 0.00 0.00 1.89
1899 3006 8.185505 GGTTTGGATCGTTTGCACTAAATATTA 58.814 33.333 0.00 0.00 0.00 0.98
1900 3007 7.033185 GGTTTGGATCGTTTGCACTAAATATT 58.967 34.615 0.00 0.00 0.00 1.28
1901 3008 6.377146 AGGTTTGGATCGTTTGCACTAAATAT 59.623 34.615 0.00 0.00 0.00 1.28
1902 3009 5.708230 AGGTTTGGATCGTTTGCACTAAATA 59.292 36.000 0.00 0.00 0.00 1.40
1903 3010 4.522789 AGGTTTGGATCGTTTGCACTAAAT 59.477 37.500 0.00 0.00 0.00 1.40
1904 3011 3.886505 AGGTTTGGATCGTTTGCACTAAA 59.113 39.130 0.00 0.00 0.00 1.85
1905 3012 3.482436 AGGTTTGGATCGTTTGCACTAA 58.518 40.909 0.00 0.00 0.00 2.24
1906 3013 3.071479 GAGGTTTGGATCGTTTGCACTA 58.929 45.455 0.00 0.00 0.00 2.74
1907 3014 1.880027 GAGGTTTGGATCGTTTGCACT 59.120 47.619 0.00 0.00 0.00 4.40
1908 3015 1.606668 TGAGGTTTGGATCGTTTGCAC 59.393 47.619 0.00 0.00 0.00 4.57
1909 3016 1.606668 GTGAGGTTTGGATCGTTTGCA 59.393 47.619 0.00 0.00 0.00 4.08
1910 3017 1.880027 AGTGAGGTTTGGATCGTTTGC 59.120 47.619 0.00 0.00 0.00 3.68
1911 3018 4.568152 AAAGTGAGGTTTGGATCGTTTG 57.432 40.909 0.00 0.00 0.00 2.93
1912 3019 4.517832 GGTAAAGTGAGGTTTGGATCGTTT 59.482 41.667 0.00 0.00 0.00 3.60
1913 3020 4.070009 GGTAAAGTGAGGTTTGGATCGTT 58.930 43.478 0.00 0.00 0.00 3.85
1914 3021 3.326880 AGGTAAAGTGAGGTTTGGATCGT 59.673 43.478 0.00 0.00 0.00 3.73
1915 3022 3.939066 AGGTAAAGTGAGGTTTGGATCG 58.061 45.455 0.00 0.00 0.00 3.69
1916 3023 6.650427 AAAAGGTAAAGTGAGGTTTGGATC 57.350 37.500 0.00 0.00 0.00 3.36
1917 3024 6.685368 GCAAAAAGGTAAAGTGAGGTTTGGAT 60.685 38.462 0.00 0.00 0.00 3.41
1918 3025 5.394773 GCAAAAAGGTAAAGTGAGGTTTGGA 60.395 40.000 0.00 0.00 0.00 3.53
1919 3026 4.808895 GCAAAAAGGTAAAGTGAGGTTTGG 59.191 41.667 0.00 0.00 0.00 3.28
1920 3027 5.519927 CAGCAAAAAGGTAAAGTGAGGTTTG 59.480 40.000 0.00 0.00 0.00 2.93
1921 3028 5.420739 TCAGCAAAAAGGTAAAGTGAGGTTT 59.579 36.000 0.00 0.00 0.00 3.27
1922 3029 4.953579 TCAGCAAAAAGGTAAAGTGAGGTT 59.046 37.500 0.00 0.00 0.00 3.50
1923 3030 4.532834 TCAGCAAAAAGGTAAAGTGAGGT 58.467 39.130 0.00 0.00 0.00 3.85
1924 3031 5.163561 TGTTCAGCAAAAAGGTAAAGTGAGG 60.164 40.000 0.00 0.00 0.00 3.86
1925 3032 5.890334 TGTTCAGCAAAAAGGTAAAGTGAG 58.110 37.500 0.00 0.00 0.00 3.51
1926 3033 5.906113 TGTTCAGCAAAAAGGTAAAGTGA 57.094 34.783 0.00 0.00 0.00 3.41
1927 3034 7.538303 AAATGTTCAGCAAAAAGGTAAAGTG 57.462 32.000 0.00 0.00 0.00 3.16
1928 3035 9.830975 ATAAAATGTTCAGCAAAAAGGTAAAGT 57.169 25.926 0.00 0.00 0.00 2.66
1932 3039 9.606631 ACAAATAAAATGTTCAGCAAAAAGGTA 57.393 25.926 0.00 0.00 0.00 3.08
1933 3040 8.397148 CACAAATAAAATGTTCAGCAAAAAGGT 58.603 29.630 0.00 0.00 0.00 3.50
1934 3041 7.376601 GCACAAATAAAATGTTCAGCAAAAAGG 59.623 33.333 0.00 0.00 0.00 3.11
1935 3042 7.110490 CGCACAAATAAAATGTTCAGCAAAAAG 59.890 33.333 0.00 0.00 0.00 2.27
1936 3043 6.904011 CGCACAAATAAAATGTTCAGCAAAAA 59.096 30.769 0.00 0.00 0.00 1.94
1937 3044 6.256539 TCGCACAAATAAAATGTTCAGCAAAA 59.743 30.769 0.00 0.00 0.00 2.44
1938 3045 5.750547 TCGCACAAATAAAATGTTCAGCAAA 59.249 32.000 0.00 0.00 0.00 3.68
1939 3046 5.284864 TCGCACAAATAAAATGTTCAGCAA 58.715 33.333 0.00 0.00 0.00 3.91
1940 3047 4.864633 TCGCACAAATAAAATGTTCAGCA 58.135 34.783 0.00 0.00 0.00 4.41
1941 3048 6.393720 AATCGCACAAATAAAATGTTCAGC 57.606 33.333 0.00 0.00 0.00 4.26
1942 3049 8.231304 AGAAATCGCACAAATAAAATGTTCAG 57.769 30.769 0.00 0.00 0.00 3.02
1943 3050 9.123709 GTAGAAATCGCACAAATAAAATGTTCA 57.876 29.630 0.00 0.00 0.00 3.18
1944 3051 9.123709 TGTAGAAATCGCACAAATAAAATGTTC 57.876 29.630 0.00 0.00 0.00 3.18
1945 3052 9.469807 TTGTAGAAATCGCACAAATAAAATGTT 57.530 25.926 2.45 0.00 0.00 2.71
1946 3053 9.638239 ATTGTAGAAATCGCACAAATAAAATGT 57.362 25.926 7.42 0.00 35.91 2.71
1949 3056 9.906660 AAGATTGTAGAAATCGCACAAATAAAA 57.093 25.926 7.42 0.00 35.91 1.52
1950 3057 9.906660 AAAGATTGTAGAAATCGCACAAATAAA 57.093 25.926 7.42 0.00 35.91 1.40
1966 3073 9.289303 GGCACAACAACATTATAAAGATTGTAG 57.711 33.333 10.87 7.24 33.27 2.74
1967 3074 8.797438 TGGCACAACAACATTATAAAGATTGTA 58.203 29.630 10.87 0.00 33.27 2.41
1968 3075 7.665690 TGGCACAACAACATTATAAAGATTGT 58.334 30.769 6.56 6.56 35.05 2.71
2051 3158 2.718073 GCCGATACCACCAGGACGT 61.718 63.158 0.00 0.00 38.69 4.34
2071 3178 4.704833 CAGCACCACCAGGACCCG 62.705 72.222 0.00 0.00 38.69 5.28
2109 3237 2.636412 CGACGTTGGGAGCTGGAGA 61.636 63.158 0.00 0.00 0.00 3.71
2126 3254 2.103042 GCCAAGTCAGGTGCTAGCG 61.103 63.158 10.77 0.00 0.00 4.26
2142 3270 2.152082 CTGGCATCATGCTAGGAAGCC 61.152 57.143 15.13 11.62 46.50 4.35
2165 3293 5.411977 TGTAAGCCTAGCTAGATCATCGTAC 59.588 44.000 22.70 15.48 38.25 3.67
2166 3294 5.557866 TGTAAGCCTAGCTAGATCATCGTA 58.442 41.667 22.70 5.63 38.25 3.43
2167 3295 4.399219 TGTAAGCCTAGCTAGATCATCGT 58.601 43.478 22.70 6.49 38.25 3.73
2216 3344 2.550978 CAACACATAGTTCGGCCTAGG 58.449 52.381 3.67 3.67 38.74 3.02
2282 3410 8.522178 ACTAAACAAAAGTAGAGAACTCATCG 57.478 34.615 4.64 0.00 37.50 3.84
2340 3468 5.970317 ACATGAAAGATCAGCATTTGACA 57.030 34.783 0.00 0.00 39.39 3.58
2342 3470 6.317140 GTCCTACATGAAAGATCAGCATTTGA 59.683 38.462 0.00 0.00 39.39 2.69
2349 3477 5.600484 AGGTAGGTCCTACATGAAAGATCAG 59.400 44.000 26.86 0.00 46.10 2.90
2366 3494 5.491982 CTGATGCTCAAAAAGTAGGTAGGT 58.508 41.667 0.00 0.00 0.00 3.08
2449 3577 4.744795 ACTTACTCTTAGGGCACATCTG 57.255 45.455 0.00 0.00 0.00 2.90
2454 3582 9.205719 GCTTTATTATACTTACTCTTAGGGCAC 57.794 37.037 0.00 0.00 0.00 5.01
2486 3895 3.736720 TGAAAGATGCTATAGCCTGCTG 58.263 45.455 21.84 0.00 41.18 4.41
2487 3896 4.202440 ACATGAAAGATGCTATAGCCTGCT 60.202 41.667 21.84 12.87 41.18 4.24
2488 3897 4.070716 ACATGAAAGATGCTATAGCCTGC 58.929 43.478 21.84 10.85 41.18 4.85
2489 3898 6.370994 CCTTACATGAAAGATGCTATAGCCTG 59.629 42.308 21.84 8.64 41.18 4.85
2490 3899 6.270927 TCCTTACATGAAAGATGCTATAGCCT 59.729 38.462 21.84 12.45 41.18 4.58
2491 3900 6.467677 TCCTTACATGAAAGATGCTATAGCC 58.532 40.000 21.84 7.55 41.18 3.93
2514 3923 7.118496 TCTCTCTCCTCCAACTATGATTTTC 57.882 40.000 0.00 0.00 0.00 2.29
2528 3937 0.179113 CGGCTTGCTTCTCTCTCCTC 60.179 60.000 0.00 0.00 0.00 3.71
2567 3976 3.329743 CATCCATGCTGCTTTTACTCG 57.670 47.619 0.00 0.00 0.00 4.18
2597 4006 2.104928 CCTGCTGTATCGCTCGCA 59.895 61.111 0.00 0.00 0.00 5.10
2616 4025 3.310193 GACTGGGTAGGAGGAGCTAAAT 58.690 50.000 0.00 0.00 0.00 1.40
2635 4048 1.337167 GGCAAAGGAAAGGCACATGAC 60.337 52.381 0.00 0.00 0.00 3.06
2654 4067 1.830279 TTCTTGCATGCTGAAGGAGG 58.170 50.000 20.33 0.00 0.00 4.30
2660 4073 5.918426 TCCATTTAATTCTTGCATGCTGA 57.082 34.783 20.33 14.11 0.00 4.26
2677 4090 4.202599 TGGCTGTATCATTGGCTATCCATT 60.203 41.667 0.00 0.00 43.05 3.16
2678 4091 3.331591 TGGCTGTATCATTGGCTATCCAT 59.668 43.478 0.00 0.00 43.05 3.41
2679 4092 2.710471 TGGCTGTATCATTGGCTATCCA 59.290 45.455 0.00 0.00 41.55 3.41
2680 4093 3.423539 TGGCTGTATCATTGGCTATCC 57.576 47.619 0.00 0.00 0.00 2.59
2681 4094 5.251764 AGAATGGCTGTATCATTGGCTATC 58.748 41.667 0.00 0.00 35.26 2.08
2682 4095 5.252586 AGAATGGCTGTATCATTGGCTAT 57.747 39.130 0.00 0.00 35.26 2.97
2683 4096 4.712051 AGAATGGCTGTATCATTGGCTA 57.288 40.909 0.00 0.00 35.26 3.93
2684 4097 3.589951 AGAATGGCTGTATCATTGGCT 57.410 42.857 0.00 0.00 35.26 4.75
2685 4098 4.392940 ACTAGAATGGCTGTATCATTGGC 58.607 43.478 0.00 0.00 35.26 4.52
2686 4099 9.896645 ATAATACTAGAATGGCTGTATCATTGG 57.103 33.333 0.00 0.00 35.26 3.16
2693 4106 8.696374 GGCTCATATAATACTAGAATGGCTGTA 58.304 37.037 0.00 0.00 0.00 2.74
2694 4107 7.401493 AGGCTCATATAATACTAGAATGGCTGT 59.599 37.037 0.00 0.00 0.00 4.40
2695 4108 7.790027 AGGCTCATATAATACTAGAATGGCTG 58.210 38.462 0.00 0.00 0.00 4.85
2696 4109 7.986553 AGGCTCATATAATACTAGAATGGCT 57.013 36.000 0.00 0.00 0.00 4.75
2697 4110 8.696374 TGTAGGCTCATATAATACTAGAATGGC 58.304 37.037 0.00 0.00 0.00 4.40
2704 4117 9.090103 GCCCATATGTAGGCTCATATAATACTA 57.910 37.037 13.94 0.00 46.14 1.82
2705 4118 7.967908 GCCCATATGTAGGCTCATATAATACT 58.032 38.462 13.94 0.00 46.14 2.12
2718 4131 5.952347 TGAGTGAGTATAGCCCATATGTAGG 59.048 44.000 1.24 0.00 0.00 3.18
2719 4132 7.652524 ATGAGTGAGTATAGCCCATATGTAG 57.347 40.000 1.24 0.00 0.00 2.74
2720 4133 8.435931 AAATGAGTGAGTATAGCCCATATGTA 57.564 34.615 1.24 0.00 0.00 2.29
2721 4134 6.942163 AATGAGTGAGTATAGCCCATATGT 57.058 37.500 1.24 0.00 0.00 2.29
2722 4135 7.063898 CGAAAATGAGTGAGTATAGCCCATATG 59.936 40.741 0.00 0.00 0.00 1.78
2723 4136 7.099764 CGAAAATGAGTGAGTATAGCCCATAT 58.900 38.462 0.00 0.00 0.00 1.78
2724 4137 6.455647 CGAAAATGAGTGAGTATAGCCCATA 58.544 40.000 0.00 0.00 0.00 2.74
2725 4138 5.300752 CGAAAATGAGTGAGTATAGCCCAT 58.699 41.667 0.00 0.00 0.00 4.00
2726 4139 4.442893 CCGAAAATGAGTGAGTATAGCCCA 60.443 45.833 0.00 0.00 0.00 5.36
2727 4140 4.058817 CCGAAAATGAGTGAGTATAGCCC 58.941 47.826 0.00 0.00 0.00 5.19
2728 4141 4.694339 ACCGAAAATGAGTGAGTATAGCC 58.306 43.478 0.00 0.00 0.00 3.93
2729 4142 6.663944 AAACCGAAAATGAGTGAGTATAGC 57.336 37.500 0.00 0.00 0.00 2.97
2731 4144 9.976511 CCTATAAACCGAAAATGAGTGAGTATA 57.023 33.333 0.00 0.00 0.00 1.47
2738 4151 5.112129 AGCCCTATAAACCGAAAATGAGT 57.888 39.130 0.00 0.00 0.00 3.41
2742 4155 6.605594 TGAATTGAGCCCTATAAACCGAAAAT 59.394 34.615 0.00 0.00 0.00 1.82
2772 4185 2.356125 CCATCTACCTTGGTTGGTGAGG 60.356 54.545 14.37 3.73 41.05 3.86
2822 4235 8.738645 ACAAAAGCATTAATTGGGTGTTTTTA 57.261 26.923 11.03 0.00 35.19 1.52
2904 4317 5.415701 AGAGAAAATTGACCAATGCGTGTAT 59.584 36.000 0.00 0.00 0.00 2.29
2909 4322 8.184192 AGTATTAAGAGAAAATTGACCAATGCG 58.816 33.333 0.00 0.00 0.00 4.73
2938 4351 7.498443 TCCAATGTGCATTAAATCATTGCATA 58.502 30.769 16.13 2.39 46.90 3.14
2958 4371 4.647853 CCCATCACATGTTCAGATTCCAAT 59.352 41.667 0.00 0.00 0.00 3.16
2982 4395 6.524101 TTATAAGGCTCCATTTGGTTGTTC 57.476 37.500 0.00 0.00 36.34 3.18
3034 4447 3.457012 TCCTTCCTTTCCGGTTTATAGGG 59.543 47.826 0.00 0.00 0.00 3.53
3060 4473 4.392921 ACTGTAGTAGTGCCATGTCATC 57.607 45.455 0.00 0.00 38.49 2.92
3063 4476 5.068234 TGTTACTGTAGTAGTGCCATGTC 57.932 43.478 0.00 0.00 40.65 3.06
3064 4477 4.527038 ACTGTTACTGTAGTAGTGCCATGT 59.473 41.667 5.57 0.00 40.65 3.21
3065 4478 5.073311 ACTGTTACTGTAGTAGTGCCATG 57.927 43.478 5.57 0.00 40.65 3.66
3066 4479 5.017490 AGACTGTTACTGTAGTAGTGCCAT 58.983 41.667 9.75 0.00 40.65 4.40
3067 4480 4.404640 AGACTGTTACTGTAGTAGTGCCA 58.595 43.478 9.75 0.00 40.65 4.92
3068 4481 5.388408 AAGACTGTTACTGTAGTAGTGCC 57.612 43.478 9.75 0.02 40.65 5.01
3075 4488 9.570488 GGTCAATAGTAAAGACTGTTACTGTAG 57.430 37.037 14.91 8.21 42.82 2.74
3076 4489 9.081204 TGGTCAATAGTAAAGACTGTTACTGTA 57.919 33.333 14.91 0.00 42.82 2.74
3077 4490 7.959175 TGGTCAATAGTAAAGACTGTTACTGT 58.041 34.615 14.91 0.00 42.82 3.55
3078 4491 8.873830 CATGGTCAATAGTAAAGACTGTTACTG 58.126 37.037 14.91 0.00 42.82 2.74
3079 4492 7.549488 GCATGGTCAATAGTAAAGACTGTTACT 59.451 37.037 11.97 11.97 44.57 2.24
3080 4493 7.549488 AGCATGGTCAATAGTAAAGACTGTTAC 59.451 37.037 0.00 0.00 35.03 2.50
3082 4495 6.476378 AGCATGGTCAATAGTAAAGACTGTT 58.524 36.000 0.00 0.00 37.49 3.16
3084 4497 6.344500 AGAGCATGGTCAATAGTAAAGACTG 58.656 40.000 25.71 0.19 36.28 3.51
3085 4498 6.552445 AGAGCATGGTCAATAGTAAAGACT 57.448 37.500 25.71 0.00 39.92 3.24
3087 4500 8.079211 ACTTAGAGCATGGTCAATAGTAAAGA 57.921 34.615 25.71 0.00 0.00 2.52
3090 7333 9.764363 CAATACTTAGAGCATGGTCAATAGTAA 57.236 33.333 25.71 13.89 0.00 2.24
3093 7336 6.707608 TGCAATACTTAGAGCATGGTCAATAG 59.292 38.462 25.71 19.63 31.05 1.73
3098 7341 4.191544 TGTGCAATACTTAGAGCATGGTC 58.808 43.478 17.19 17.19 39.43 4.02
3109 7352 7.607991 GGCATAGGACTTATATGTGCAATACTT 59.392 37.037 11.91 0.00 33.90 2.24
3113 7356 5.879763 TGGCATAGGACTTATATGTGCAAT 58.120 37.500 11.91 0.00 33.90 3.56
3114 7357 5.303259 TGGCATAGGACTTATATGTGCAA 57.697 39.130 11.91 0.00 33.90 4.08
3115 7358 4.972751 TGGCATAGGACTTATATGTGCA 57.027 40.909 11.91 0.00 33.90 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.