Multiple sequence alignment - TraesCS3D01G338500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G338500 chr3D 100.000 2462 0 0 1 2462 451862211 451864672 0.000000e+00 4547
1 TraesCS3D01G338500 chr3D 96.203 79 3 0 2384 2462 389443116 389443194 1.990000e-26 130
2 TraesCS3D01G338500 chr5D 96.535 1905 40 6 109 1987 483802818 483804722 0.000000e+00 3129
3 TraesCS3D01G338500 chr5D 94.509 1038 21 11 109 1121 6219242 6220268 0.000000e+00 1568
4 TraesCS3D01G338500 chr5D 91.111 180 2 2 108 273 499314629 499314450 5.290000e-57 231
5 TraesCS3D01G338500 chr5D 93.976 83 4 1 2380 2462 282783851 282783932 9.240000e-25 124
6 TraesCS3D01G338500 chr5D 94.805 77 4 0 1 77 118979262 118979338 1.200000e-23 121
7 TraesCS3D01G338500 chr2D 96.534 1904 40 7 109 1987 643858299 643856397 0.000000e+00 3127
8 TraesCS3D01G338500 chr2D 96.378 1905 43 6 109 1987 359629936 359631840 0.000000e+00 3112
9 TraesCS3D01G338500 chr2D 96.252 1601 36 6 108 1685 628291554 628293153 0.000000e+00 2603
10 TraesCS3D01G338500 chr2B 95.899 1902 56 5 108 1987 474939806 474937905 0.000000e+00 3061
11 TraesCS3D01G338500 chr2B 89.423 312 21 4 1685 1987 66521635 66521943 1.380000e-102 383
12 TraesCS3D01G338500 chr1D 95.750 1906 51 9 109 1987 254481936 254480034 0.000000e+00 3044
13 TraesCS3D01G338500 chr1D 99.213 127 1 0 108 234 446749078 446749204 1.900000e-56 230
14 TraesCS3D01G338500 chr3B 95.686 1901 61 5 108 1987 201497957 201496057 0.000000e+00 3037
15 TraesCS3D01G338500 chr3B 98.630 73 1 0 2390 2462 652545441 652545369 1.990000e-26 130
16 TraesCS3D01G338500 chr4A 94.572 1824 74 9 108 1907 309271073 309272895 0.000000e+00 2796
17 TraesCS3D01G338500 chr4A 94.398 357 19 1 2059 2414 565846336 565845980 4.630000e-152 547
18 TraesCS3D01G338500 chr4A 98.667 75 1 0 1985 2059 571043625 571043551 1.540000e-27 134
19 TraesCS3D01G338500 chr4A 97.333 75 2 0 1985 2059 12387211 12387137 7.150000e-26 128
20 TraesCS3D01G338500 chr4A 94.805 77 4 0 1 77 90230121 90230197 1.200000e-23 121
21 TraesCS3D01G338500 chr4A 94.805 77 4 0 1 77 242677693 242677769 1.200000e-23 121
22 TraesCS3D01G338500 chr4A 94.805 77 4 0 1 77 247041511 247041587 1.200000e-23 121
23 TraesCS3D01G338500 chr7A 92.804 1598 103 5 397 1987 352292166 352293758 0.000000e+00 2303
24 TraesCS3D01G338500 chr7A 93.956 364 19 3 2059 2420 712687358 712687720 4.630000e-152 547
25 TraesCS3D01G338500 chr7A 93.407 364 20 4 2059 2420 413257802 413257441 1.000000e-148 536
26 TraesCS3D01G338500 chr7A 98.667 75 1 0 1985 2059 404567009 404567083 1.540000e-27 134
27 TraesCS3D01G338500 chr7A 96.104 77 3 0 1 77 188672177 188672101 2.570000e-25 126
28 TraesCS3D01G338500 chr7A 93.976 83 4 1 1 83 10159996 10160077 9.240000e-25 124
29 TraesCS3D01G338500 chrUn 95.506 890 18 4 108 975 65424306 65423417 0.000000e+00 1402
30 TraesCS3D01G338500 chr1A 95.504 823 16 4 108 909 554473636 554474458 0.000000e+00 1295
31 TraesCS3D01G338500 chr5A 96.501 343 12 0 2059 2401 605603737 605603395 3.550000e-158 568
32 TraesCS3D01G338500 chr5A 95.170 352 16 1 2059 2409 37693410 37693761 2.770000e-154 555
33 TraesCS3D01G338500 chr5A 95.000 80 3 1 2383 2462 606990351 606990429 9.240000e-25 124
34 TraesCS3D01G338500 chr5B 94.780 364 16 3 2059 2420 60942430 60942792 4.600000e-157 564
35 TraesCS3D01G338500 chr5B 93.407 364 21 3 2059 2420 583197072 583197434 1.000000e-148 536
36 TraesCS3D01G338500 chr3A 94.505 364 17 3 2059 2420 25851271 25851633 2.140000e-155 558
37 TraesCS3D01G338500 chr3A 98.667 75 1 0 1985 2059 560747311 560747237 1.540000e-27 134
38 TraesCS3D01G338500 chr3A 93.258 89 4 2 2374 2462 109666133 109666219 1.990000e-26 130
39 TraesCS3D01G338500 chr3A 92.941 85 4 2 1 85 454995782 454995864 3.320000e-24 122
40 TraesCS3D01G338500 chr6D 94.505 364 14 6 2059 2420 229355469 229355828 7.690000e-155 556
41 TraesCS3D01G338500 chr6D 100.000 71 0 0 2391 2461 386743601 386743531 5.520000e-27 132
42 TraesCS3D01G338500 chr6D 96.203 79 1 2 2384 2462 109367176 109367252 7.150000e-26 128
43 TraesCS3D01G338500 chr2A 100.000 81 0 0 1907 1987 393118552 393118632 1.530000e-32 150
44 TraesCS3D01G338500 chr7D 97.403 77 2 0 2386 2462 276977147 276977223 5.520000e-27 132
45 TraesCS3D01G338500 chr7D 97.403 77 2 0 2386 2462 323362290 323362366 5.520000e-27 132
46 TraesCS3D01G338500 chr6A 97.368 76 2 0 1985 2060 3395705 3395780 1.990000e-26 130
47 TraesCS3D01G338500 chr6A 97.333 75 2 0 1985 2059 276258045 276257971 7.150000e-26 128
48 TraesCS3D01G338500 chr6A 97.333 75 2 0 1985 2059 447838601 447838527 7.150000e-26 128
49 TraesCS3D01G338500 chr6A 97.333 75 2 0 1985 2059 559715592 559715518 7.150000e-26 128
50 TraesCS3D01G338500 chr6A 97.333 75 2 0 1985 2059 614144784 614144858 7.150000e-26 128
51 TraesCS3D01G338500 chr6A 94.805 77 4 0 1 77 3395686 3395762 1.200000e-23 121
52 TraesCS3D01G338500 chr6A 94.805 77 4 0 1 77 276258064 276257988 1.200000e-23 121


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G338500 chr3D 451862211 451864672 2461 False 4547 4547 100.000 1 2462 1 chr3D.!!$F2 2461
1 TraesCS3D01G338500 chr5D 483802818 483804722 1904 False 3129 3129 96.535 109 1987 1 chr5D.!!$F4 1878
2 TraesCS3D01G338500 chr5D 6219242 6220268 1026 False 1568 1568 94.509 109 1121 1 chr5D.!!$F1 1012
3 TraesCS3D01G338500 chr2D 643856397 643858299 1902 True 3127 3127 96.534 109 1987 1 chr2D.!!$R1 1878
4 TraesCS3D01G338500 chr2D 359629936 359631840 1904 False 3112 3112 96.378 109 1987 1 chr2D.!!$F1 1878
5 TraesCS3D01G338500 chr2D 628291554 628293153 1599 False 2603 2603 96.252 108 1685 1 chr2D.!!$F2 1577
6 TraesCS3D01G338500 chr2B 474937905 474939806 1901 True 3061 3061 95.899 108 1987 1 chr2B.!!$R1 1879
7 TraesCS3D01G338500 chr1D 254480034 254481936 1902 True 3044 3044 95.750 109 1987 1 chr1D.!!$R1 1878
8 TraesCS3D01G338500 chr3B 201496057 201497957 1900 True 3037 3037 95.686 108 1987 1 chr3B.!!$R1 1879
9 TraesCS3D01G338500 chr4A 309271073 309272895 1822 False 2796 2796 94.572 108 1907 1 chr4A.!!$F4 1799
10 TraesCS3D01G338500 chr7A 352292166 352293758 1592 False 2303 2303 92.804 397 1987 1 chr7A.!!$F2 1590
11 TraesCS3D01G338500 chrUn 65423417 65424306 889 True 1402 1402 95.506 108 975 1 chrUn.!!$R1 867
12 TraesCS3D01G338500 chr1A 554473636 554474458 822 False 1295 1295 95.504 108 909 1 chr1A.!!$F1 801

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
106 107 1.071605 AGATTTTGAGTCTCGCGTGC 58.928 50.000 5.77 0.0 0.00 5.34 F
625 645 3.027292 TTCGCTTGGGCAACGAAC 58.973 55.556 0.00 0.0 40.56 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1052 1083 1.187087 GACCGGAACACTGAGAGGAT 58.813 55.0 9.46 0.0 0.00 3.24 R
2219 2255 0.901827 ACATGTATGTGTCCTCGGCA 59.098 50.0 0.00 0.0 40.03 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 6.780706 TTTTTAAAACTTTTGCACCGTTGA 57.219 29.167 0.00 0.00 0.00 3.18
51 52 6.780706 TTTTAAAACTTTTGCACCGTTGAA 57.219 29.167 0.00 0.00 0.00 2.69
52 53 6.780706 TTTAAAACTTTTGCACCGTTGAAA 57.219 29.167 0.00 0.00 0.00 2.69
53 54 4.655440 AAAACTTTTGCACCGTTGAAAC 57.345 36.364 0.00 0.00 0.00 2.78
54 55 2.287393 ACTTTTGCACCGTTGAAACC 57.713 45.000 0.00 0.00 0.00 3.27
55 56 1.134936 ACTTTTGCACCGTTGAAACCC 60.135 47.619 0.00 0.00 0.00 4.11
56 57 1.136110 CTTTTGCACCGTTGAAACCCT 59.864 47.619 0.00 0.00 0.00 4.34
57 58 1.187087 TTTGCACCGTTGAAACCCTT 58.813 45.000 0.00 0.00 0.00 3.95
58 59 2.054232 TTGCACCGTTGAAACCCTTA 57.946 45.000 0.00 0.00 0.00 2.69
59 60 2.054232 TGCACCGTTGAAACCCTTAA 57.946 45.000 0.00 0.00 0.00 1.85
60 61 1.677052 TGCACCGTTGAAACCCTTAAC 59.323 47.619 0.00 0.00 0.00 2.01
61 62 1.951602 GCACCGTTGAAACCCTTAACT 59.048 47.619 0.00 0.00 0.00 2.24
62 63 3.140623 GCACCGTTGAAACCCTTAACTA 58.859 45.455 0.00 0.00 0.00 2.24
63 64 3.187842 GCACCGTTGAAACCCTTAACTAG 59.812 47.826 0.00 0.00 0.00 2.57
64 65 4.383173 CACCGTTGAAACCCTTAACTAGT 58.617 43.478 0.00 0.00 0.00 2.57
65 66 4.818005 CACCGTTGAAACCCTTAACTAGTT 59.182 41.667 13.68 13.68 0.00 2.24
66 67 5.049886 CACCGTTGAAACCCTTAACTAGTTC 60.050 44.000 12.39 0.00 0.00 3.01
67 68 5.163269 ACCGTTGAAACCCTTAACTAGTTCT 60.163 40.000 12.39 0.00 0.00 3.01
68 69 5.178809 CCGTTGAAACCCTTAACTAGTTCTG 59.821 44.000 12.39 6.11 0.00 3.02
69 70 5.756833 CGTTGAAACCCTTAACTAGTTCTGT 59.243 40.000 12.39 2.55 0.00 3.41
70 71 6.292703 CGTTGAAACCCTTAACTAGTTCTGTG 60.293 42.308 12.39 2.63 0.00 3.66
71 72 5.617252 TGAAACCCTTAACTAGTTCTGTGG 58.383 41.667 12.39 11.06 0.00 4.17
72 73 4.635699 AACCCTTAACTAGTTCTGTGGG 57.364 45.455 22.72 22.72 39.26 4.61
73 74 3.865571 ACCCTTAACTAGTTCTGTGGGA 58.134 45.455 27.41 5.33 37.25 4.37
74 75 4.237018 ACCCTTAACTAGTTCTGTGGGAA 58.763 43.478 27.41 11.45 37.25 3.97
75 76 4.286291 ACCCTTAACTAGTTCTGTGGGAAG 59.714 45.833 27.41 17.85 37.25 3.46
76 77 4.254492 CCTTAACTAGTTCTGTGGGAAGC 58.746 47.826 12.39 0.00 34.23 3.86
77 78 4.020128 CCTTAACTAGTTCTGTGGGAAGCT 60.020 45.833 12.39 0.00 34.23 3.74
78 79 3.686916 AACTAGTTCTGTGGGAAGCTC 57.313 47.619 1.12 0.00 34.23 4.09
79 80 2.609747 ACTAGTTCTGTGGGAAGCTCA 58.390 47.619 0.00 0.00 34.23 4.26
80 81 3.177228 ACTAGTTCTGTGGGAAGCTCAT 58.823 45.455 0.00 0.00 34.23 2.90
81 82 3.584848 ACTAGTTCTGTGGGAAGCTCATT 59.415 43.478 0.00 0.00 34.23 2.57
82 83 2.787994 AGTTCTGTGGGAAGCTCATTG 58.212 47.619 0.00 0.00 34.23 2.82
83 84 2.373169 AGTTCTGTGGGAAGCTCATTGA 59.627 45.455 0.00 0.00 34.23 2.57
84 85 3.149196 GTTCTGTGGGAAGCTCATTGAA 58.851 45.455 0.00 0.00 34.23 2.69
85 86 3.726557 TCTGTGGGAAGCTCATTGAAT 57.273 42.857 0.00 0.00 0.00 2.57
86 87 4.038271 TCTGTGGGAAGCTCATTGAATT 57.962 40.909 0.00 0.00 0.00 2.17
87 88 5.178096 TCTGTGGGAAGCTCATTGAATTA 57.822 39.130 0.00 0.00 0.00 1.40
88 89 5.188434 TCTGTGGGAAGCTCATTGAATTAG 58.812 41.667 0.00 0.00 0.00 1.73
89 90 5.045651 TCTGTGGGAAGCTCATTGAATTAGA 60.046 40.000 0.00 0.00 0.00 2.10
90 91 5.759059 TGTGGGAAGCTCATTGAATTAGAT 58.241 37.500 0.00 0.00 0.00 1.98
91 92 6.189859 TGTGGGAAGCTCATTGAATTAGATT 58.810 36.000 0.00 0.00 0.00 2.40
92 93 6.664816 TGTGGGAAGCTCATTGAATTAGATTT 59.335 34.615 0.00 0.00 0.00 2.17
93 94 7.178983 TGTGGGAAGCTCATTGAATTAGATTTT 59.821 33.333 0.00 0.00 0.00 1.82
94 95 7.490402 GTGGGAAGCTCATTGAATTAGATTTTG 59.510 37.037 0.00 0.00 0.00 2.44
95 96 7.396907 TGGGAAGCTCATTGAATTAGATTTTGA 59.603 33.333 0.00 0.00 0.00 2.69
96 97 7.919621 GGGAAGCTCATTGAATTAGATTTTGAG 59.080 37.037 0.00 0.00 33.86 3.02
97 98 8.465201 GGAAGCTCATTGAATTAGATTTTGAGT 58.535 33.333 0.00 0.00 33.40 3.41
98 99 9.500864 GAAGCTCATTGAATTAGATTTTGAGTC 57.499 33.333 0.00 0.00 33.40 3.36
99 100 8.804912 AGCTCATTGAATTAGATTTTGAGTCT 57.195 30.769 0.00 0.00 33.40 3.24
100 101 8.891720 AGCTCATTGAATTAGATTTTGAGTCTC 58.108 33.333 0.00 0.00 33.40 3.36
101 102 7.850003 GCTCATTGAATTAGATTTTGAGTCTCG 59.150 37.037 0.00 0.00 33.40 4.04
102 103 7.688372 TCATTGAATTAGATTTTGAGTCTCGC 58.312 34.615 0.00 0.00 0.00 5.03
103 104 5.702622 TGAATTAGATTTTGAGTCTCGCG 57.297 39.130 0.00 0.00 0.00 5.87
104 105 5.168569 TGAATTAGATTTTGAGTCTCGCGT 58.831 37.500 5.77 0.00 0.00 6.01
105 106 5.062183 TGAATTAGATTTTGAGTCTCGCGTG 59.938 40.000 5.77 3.13 0.00 5.34
106 107 1.071605 AGATTTTGAGTCTCGCGTGC 58.928 50.000 5.77 0.00 0.00 5.34
358 373 3.951775 AGCGCAACCCAAATTAATTCA 57.048 38.095 11.47 0.00 0.00 2.57
625 645 3.027292 TTCGCTTGGGCAACGAAC 58.973 55.556 0.00 0.00 40.56 3.95
654 674 3.198853 CCTGGTCCCCTTTTCTCTCTTAG 59.801 52.174 0.00 0.00 0.00 2.18
937 968 3.878103 GAGTAGAGACACTGCCGATAAGA 59.122 47.826 0.00 0.00 31.60 2.10
1102 1133 3.724374 ACTCTCGGACGAATTTTCAACA 58.276 40.909 0.00 0.00 0.00 3.33
1158 1189 2.167900 AGATAGTAGTGCAACGTTCCCC 59.832 50.000 0.00 0.00 45.86 4.81
1253 1284 5.298527 TCGTCGATCTTTTAGCTCCTTATCA 59.701 40.000 0.00 0.00 0.00 2.15
1264 1295 3.444703 CTCCTTATCAACGTGGAGGAG 57.555 52.381 11.26 11.26 45.23 3.69
1357 1392 2.818169 GCTCATGGGGGCGTATCCA 61.818 63.158 0.00 0.00 37.46 3.41
1558 1594 9.167311 GGCGGAATATTTCTGAGATGTTAATAT 57.833 33.333 0.30 0.00 38.34 1.28
1606 1642 9.967245 CGATAATATCTTTCGTTTTGTTCAAGA 57.033 29.630 0.00 0.00 0.00 3.02
1810 1846 4.751060 ACATTTGCACATTTGGATGCTAG 58.249 39.130 0.00 0.00 42.55 3.42
1876 1912 7.071698 TCCAGCAGTAGATCCTTTAGATTCAAT 59.928 37.037 0.00 0.00 34.42 2.57
1880 1916 8.147058 GCAGTAGATCCTTTAGATTCAATCTCA 58.853 37.037 2.18 0.00 40.76 3.27
1987 2023 5.185454 ACTTCAGGACATTATCGCAATTCA 58.815 37.500 0.00 0.00 0.00 2.57
1988 2024 5.295292 ACTTCAGGACATTATCGCAATTCAG 59.705 40.000 0.00 0.00 0.00 3.02
1989 2025 5.022282 TCAGGACATTATCGCAATTCAGA 57.978 39.130 0.00 0.00 0.00 3.27
1990 2026 5.427378 TCAGGACATTATCGCAATTCAGAA 58.573 37.500 0.00 0.00 0.00 3.02
1991 2027 6.057533 TCAGGACATTATCGCAATTCAGAAT 58.942 36.000 0.00 0.00 0.00 2.40
1992 2028 6.543465 TCAGGACATTATCGCAATTCAGAATT 59.457 34.615 2.20 2.20 0.00 2.17
1993 2029 7.067372 TCAGGACATTATCGCAATTCAGAATTT 59.933 33.333 5.58 0.00 0.00 1.82
1994 2030 7.703621 CAGGACATTATCGCAATTCAGAATTTT 59.296 33.333 5.58 0.00 0.00 1.82
1995 2031 8.253113 AGGACATTATCGCAATTCAGAATTTTT 58.747 29.630 5.58 0.00 0.00 1.94
1996 2032 8.323140 GGACATTATCGCAATTCAGAATTTTTG 58.677 33.333 5.58 0.00 0.00 2.44
1997 2033 8.984891 ACATTATCGCAATTCAGAATTTTTGA 57.015 26.923 5.58 5.03 0.00 2.69
1998 2034 9.421806 ACATTATCGCAATTCAGAATTTTTGAA 57.578 25.926 5.58 4.99 38.76 2.69
2002 2038 7.769272 TCGCAATTCAGAATTTTTGAAAACT 57.231 28.000 5.58 0.00 38.01 2.66
2003 2039 8.195617 TCGCAATTCAGAATTTTTGAAAACTT 57.804 26.923 5.58 0.00 38.01 2.66
2004 2040 8.663911 TCGCAATTCAGAATTTTTGAAAACTTT 58.336 25.926 5.58 0.00 38.01 2.66
2005 2041 9.276397 CGCAATTCAGAATTTTTGAAAACTTTT 57.724 25.926 5.58 0.00 38.01 2.27
2009 2045 8.947304 TTCAGAATTTTTGAAAACTTTTGCAC 57.053 26.923 6.45 0.00 31.98 4.57
2010 2046 7.525759 TCAGAATTTTTGAAAACTTTTGCACC 58.474 30.769 6.45 0.00 0.00 5.01
2011 2047 7.173907 TCAGAATTTTTGAAAACTTTTGCACCA 59.826 29.630 6.45 0.00 0.00 4.17
2012 2048 7.969508 CAGAATTTTTGAAAACTTTTGCACCAT 59.030 29.630 0.00 0.00 0.00 3.55
2013 2049 8.522003 AGAATTTTTGAAAACTTTTGCACCATT 58.478 25.926 0.00 0.00 0.00 3.16
2014 2050 8.463456 AATTTTTGAAAACTTTTGCACCATTG 57.537 26.923 0.00 0.00 0.00 2.82
2015 2051 6.808008 TTTTGAAAACTTTTGCACCATTGA 57.192 29.167 0.00 0.00 0.00 2.57
2016 2052 6.808008 TTTGAAAACTTTTGCACCATTGAA 57.192 29.167 0.00 0.00 0.00 2.69
2017 2053 6.808008 TTGAAAACTTTTGCACCATTGAAA 57.192 29.167 0.00 0.00 0.00 2.69
2018 2054 6.175712 TGAAAACTTTTGCACCATTGAAAC 57.824 33.333 0.00 0.00 0.00 2.78
2019 2055 5.123027 TGAAAACTTTTGCACCATTGAAACC 59.877 36.000 0.00 0.00 0.00 3.27
2020 2056 3.192541 ACTTTTGCACCATTGAAACCC 57.807 42.857 0.00 0.00 0.00 4.11
2021 2057 2.771372 ACTTTTGCACCATTGAAACCCT 59.229 40.909 0.00 0.00 0.00 4.34
2022 2058 3.199727 ACTTTTGCACCATTGAAACCCTT 59.800 39.130 0.00 0.00 0.00 3.95
2023 2059 4.407296 ACTTTTGCACCATTGAAACCCTTA 59.593 37.500 0.00 0.00 0.00 2.69
2024 2060 5.104735 ACTTTTGCACCATTGAAACCCTTAA 60.105 36.000 0.00 0.00 0.00 1.85
2025 2061 4.329462 TTGCACCATTGAAACCCTTAAC 57.671 40.909 0.00 0.00 0.00 2.01
2026 2062 3.571590 TGCACCATTGAAACCCTTAACT 58.428 40.909 0.00 0.00 0.00 2.24
2027 2063 4.730966 TGCACCATTGAAACCCTTAACTA 58.269 39.130 0.00 0.00 0.00 2.24
2028 2064 4.764823 TGCACCATTGAAACCCTTAACTAG 59.235 41.667 0.00 0.00 0.00 2.57
2029 2065 4.765339 GCACCATTGAAACCCTTAACTAGT 59.235 41.667 0.00 0.00 0.00 2.57
2030 2066 5.243060 GCACCATTGAAACCCTTAACTAGTT 59.757 40.000 13.68 13.68 0.00 2.24
2031 2067 6.569801 GCACCATTGAAACCCTTAACTAGTTC 60.570 42.308 12.39 0.00 0.00 3.01
2032 2068 6.715264 CACCATTGAAACCCTTAACTAGTTCT 59.285 38.462 12.39 0.00 0.00 3.01
2033 2069 6.715264 ACCATTGAAACCCTTAACTAGTTCTG 59.285 38.462 12.39 6.11 0.00 3.02
2034 2070 6.715264 CCATTGAAACCCTTAACTAGTTCTGT 59.285 38.462 12.39 2.55 0.00 3.41
2035 2071 7.308589 CCATTGAAACCCTTAACTAGTTCTGTG 60.309 40.741 12.39 2.63 0.00 3.66
2036 2072 5.617252 TGAAACCCTTAACTAGTTCTGTGG 58.383 41.667 12.39 11.06 0.00 4.17
2037 2073 3.697619 ACCCTTAACTAGTTCTGTGGC 57.302 47.619 12.39 0.00 0.00 5.01
2038 2074 2.976882 ACCCTTAACTAGTTCTGTGGCA 59.023 45.455 12.39 0.00 0.00 4.92
2039 2075 3.393278 ACCCTTAACTAGTTCTGTGGCAA 59.607 43.478 12.39 0.00 0.00 4.52
2040 2076 4.003648 CCCTTAACTAGTTCTGTGGCAAG 58.996 47.826 12.39 8.12 0.00 4.01
2041 2077 3.437049 CCTTAACTAGTTCTGTGGCAAGC 59.563 47.826 12.39 0.00 0.00 4.01
2042 2078 2.638480 AACTAGTTCTGTGGCAAGCA 57.362 45.000 1.12 0.00 0.00 3.91
2043 2079 1.884235 ACTAGTTCTGTGGCAAGCAC 58.116 50.000 0.00 0.00 0.00 4.40
2044 2080 1.417890 ACTAGTTCTGTGGCAAGCACT 59.582 47.619 0.00 0.00 0.00 4.40
2045 2081 2.158755 ACTAGTTCTGTGGCAAGCACTT 60.159 45.455 7.12 0.00 0.00 3.16
2046 2082 1.027357 AGTTCTGTGGCAAGCACTTG 58.973 50.000 6.01 6.01 43.14 3.16
2047 2083 0.740737 GTTCTGTGGCAAGCACTTGT 59.259 50.000 11.77 0.00 42.31 3.16
2048 2084 1.946768 GTTCTGTGGCAAGCACTTGTA 59.053 47.619 11.77 0.00 42.31 2.41
2049 2085 1.882912 TCTGTGGCAAGCACTTGTAG 58.117 50.000 11.77 6.14 42.31 2.74
2050 2086 1.416030 TCTGTGGCAAGCACTTGTAGA 59.584 47.619 11.77 8.02 42.31 2.59
2051 2087 2.158827 TCTGTGGCAAGCACTTGTAGAA 60.159 45.455 11.77 0.00 42.31 2.10
2052 2088 2.618241 CTGTGGCAAGCACTTGTAGAAA 59.382 45.455 11.77 0.00 42.31 2.52
2053 2089 3.020274 TGTGGCAAGCACTTGTAGAAAA 58.980 40.909 11.77 0.00 42.31 2.29
2054 2090 3.636300 TGTGGCAAGCACTTGTAGAAAAT 59.364 39.130 11.77 0.00 42.31 1.82
2055 2091 4.229876 GTGGCAAGCACTTGTAGAAAATC 58.770 43.478 11.77 0.00 42.31 2.17
2056 2092 3.255642 TGGCAAGCACTTGTAGAAAATCC 59.744 43.478 11.77 3.01 42.31 3.01
2057 2093 3.507622 GGCAAGCACTTGTAGAAAATCCT 59.492 43.478 11.77 0.00 42.31 3.24
2058 2094 4.700213 GGCAAGCACTTGTAGAAAATCCTA 59.300 41.667 11.77 0.00 42.31 2.94
2059 2095 5.183140 GGCAAGCACTTGTAGAAAATCCTAA 59.817 40.000 11.77 0.00 42.31 2.69
2060 2096 6.317857 GCAAGCACTTGTAGAAAATCCTAAG 58.682 40.000 11.77 0.00 42.31 2.18
2061 2097 6.072452 GCAAGCACTTGTAGAAAATCCTAAGT 60.072 38.462 11.77 0.00 42.31 2.24
2062 2098 7.522236 GCAAGCACTTGTAGAAAATCCTAAGTT 60.522 37.037 11.77 0.00 42.31 2.66
2063 2099 8.352942 CAAGCACTTGTAGAAAATCCTAAGTTT 58.647 33.333 2.12 0.00 35.92 2.66
2064 2100 8.465273 AGCACTTGTAGAAAATCCTAAGTTTT 57.535 30.769 0.00 0.00 0.00 2.43
2065 2101 8.568794 AGCACTTGTAGAAAATCCTAAGTTTTC 58.431 33.333 3.78 3.78 42.84 2.29
2066 2102 8.349983 GCACTTGTAGAAAATCCTAAGTTTTCA 58.650 33.333 12.23 0.00 44.19 2.69
2121 2157 9.653287 ACACCTATAATATAACATGATCCAACG 57.347 33.333 0.00 0.00 0.00 4.10
2122 2158 9.098355 CACCTATAATATAACATGATCCAACGG 57.902 37.037 0.00 0.00 0.00 4.44
2123 2159 9.042450 ACCTATAATATAACATGATCCAACGGA 57.958 33.333 0.00 0.00 35.55 4.69
2124 2160 9.534565 CCTATAATATAACATGATCCAACGGAG 57.465 37.037 0.00 0.00 34.05 4.63
2125 2161 9.534565 CTATAATATAACATGATCCAACGGAGG 57.465 37.037 0.00 0.00 34.05 4.30
2126 2162 3.492102 ATAACATGATCCAACGGAGGG 57.508 47.619 0.00 0.00 34.05 4.30
2127 2163 1.285280 AACATGATCCAACGGAGGGA 58.715 50.000 0.00 0.00 39.14 4.20
2129 2165 1.846439 ACATGATCCAACGGAGGGATT 59.154 47.619 0.00 0.00 45.05 3.01
2130 2166 3.045634 ACATGATCCAACGGAGGGATTA 58.954 45.455 0.00 3.33 45.05 1.75
2131 2167 3.458118 ACATGATCCAACGGAGGGATTAA 59.542 43.478 0.00 0.35 45.05 1.40
2132 2168 4.080015 ACATGATCCAACGGAGGGATTAAA 60.080 41.667 0.00 0.00 45.05 1.52
2133 2169 4.577988 TGATCCAACGGAGGGATTAAAA 57.422 40.909 6.27 0.00 45.05 1.52
2134 2170 4.924625 TGATCCAACGGAGGGATTAAAAA 58.075 39.130 6.27 0.00 45.05 1.94
2155 2191 6.721571 AAAAATACGACTGTATGTGTCCTG 57.278 37.500 0.00 0.00 40.42 3.86
2156 2192 4.386867 AATACGACTGTATGTGTCCTGG 57.613 45.455 0.00 0.00 40.42 4.45
2157 2193 1.919240 ACGACTGTATGTGTCCTGGA 58.081 50.000 0.00 0.00 0.00 3.86
2158 2194 1.544691 ACGACTGTATGTGTCCTGGAC 59.455 52.381 19.96 19.96 0.00 4.02
2159 2195 1.544246 CGACTGTATGTGTCCTGGACA 59.456 52.381 25.12 25.12 40.50 4.02
2160 2196 2.029380 CGACTGTATGTGTCCTGGACAA 60.029 50.000 29.84 19.75 44.49 3.18
2161 2197 3.554129 CGACTGTATGTGTCCTGGACAAA 60.554 47.826 29.84 25.70 44.49 2.83
2162 2198 4.385825 GACTGTATGTGTCCTGGACAAAA 58.614 43.478 29.84 21.17 44.49 2.44
2163 2199 4.787551 ACTGTATGTGTCCTGGACAAAAA 58.212 39.130 29.84 18.76 44.49 1.94
2200 2236 9.208022 TCAGTATATATTTATGTTGCAGTGAGC 57.792 33.333 0.00 0.00 45.96 4.26
2201 2237 9.212641 CAGTATATATTTATGTTGCAGTGAGCT 57.787 33.333 0.00 0.00 45.94 4.09
2202 2238 9.212641 AGTATATATTTATGTTGCAGTGAGCTG 57.787 33.333 0.00 0.00 45.94 4.24
2203 2239 9.208022 GTATATATTTATGTTGCAGTGAGCTGA 57.792 33.333 0.00 0.00 45.28 4.26
2204 2240 8.681486 ATATATTTATGTTGCAGTGAGCTGAA 57.319 30.769 0.00 0.00 45.28 3.02
2205 2241 5.710513 ATTTATGTTGCAGTGAGCTGAAA 57.289 34.783 0.00 0.00 45.28 2.69
2206 2242 5.710513 TTTATGTTGCAGTGAGCTGAAAT 57.289 34.783 0.00 0.00 41.92 2.17
2207 2243 3.570926 ATGTTGCAGTGAGCTGAAATG 57.429 42.857 0.00 0.00 41.92 2.32
2208 2244 1.001048 TGTTGCAGTGAGCTGAAATGC 60.001 47.619 10.63 10.63 41.92 3.56
2209 2245 1.268899 GTTGCAGTGAGCTGAAATGCT 59.731 47.619 16.60 0.00 41.92 3.79
2210 2246 1.612676 TGCAGTGAGCTGAAATGCTT 58.387 45.000 16.60 0.00 45.28 3.91
2211 2247 2.781923 TGCAGTGAGCTGAAATGCTTA 58.218 42.857 16.60 0.00 45.28 3.09
2212 2248 3.349927 TGCAGTGAGCTGAAATGCTTAT 58.650 40.909 16.60 0.00 45.28 1.73
2213 2249 3.760151 TGCAGTGAGCTGAAATGCTTATT 59.240 39.130 16.60 0.00 45.28 1.40
2214 2250 4.943093 TGCAGTGAGCTGAAATGCTTATTA 59.057 37.500 16.60 0.00 45.28 0.98
2215 2251 5.591472 TGCAGTGAGCTGAAATGCTTATTAT 59.409 36.000 16.60 0.00 45.28 1.28
2216 2252 6.095860 TGCAGTGAGCTGAAATGCTTATTATT 59.904 34.615 16.60 0.00 45.28 1.40
2217 2253 6.976925 GCAGTGAGCTGAAATGCTTATTATTT 59.023 34.615 10.35 0.00 45.28 1.40
2218 2254 7.490402 GCAGTGAGCTGAAATGCTTATTATTTT 59.510 33.333 10.35 0.00 45.28 1.82
2219 2255 9.362539 CAGTGAGCTGAAATGCTTATTATTTTT 57.637 29.630 0.00 0.00 45.28 1.94
2220 2256 9.362539 AGTGAGCTGAAATGCTTATTATTTTTG 57.637 29.630 0.00 0.00 44.17 2.44
2221 2257 8.112449 GTGAGCTGAAATGCTTATTATTTTTGC 58.888 33.333 0.00 0.00 44.17 3.68
2222 2258 7.278424 TGAGCTGAAATGCTTATTATTTTTGCC 59.722 33.333 0.00 0.00 44.17 4.52
2223 2259 6.256321 AGCTGAAATGCTTATTATTTTTGCCG 59.744 34.615 0.00 0.00 40.93 5.69
2224 2260 6.255453 GCTGAAATGCTTATTATTTTTGCCGA 59.745 34.615 0.00 0.00 0.00 5.54
2225 2261 7.515684 GCTGAAATGCTTATTATTTTTGCCGAG 60.516 37.037 0.00 0.00 0.00 4.63
2226 2262 6.756074 TGAAATGCTTATTATTTTTGCCGAGG 59.244 34.615 0.00 0.00 0.00 4.63
2227 2263 6.463995 AATGCTTATTATTTTTGCCGAGGA 57.536 33.333 0.00 0.00 0.00 3.71
2228 2264 5.243426 TGCTTATTATTTTTGCCGAGGAC 57.757 39.130 0.00 0.00 0.00 3.85
2229 2265 4.702612 TGCTTATTATTTTTGCCGAGGACA 59.297 37.500 0.00 0.00 0.00 4.02
2230 2266 5.034797 GCTTATTATTTTTGCCGAGGACAC 58.965 41.667 0.00 0.00 0.00 3.67
2231 2267 5.392595 GCTTATTATTTTTGCCGAGGACACA 60.393 40.000 0.00 0.00 0.00 3.72
2232 2268 6.680378 GCTTATTATTTTTGCCGAGGACACAT 60.680 38.462 0.00 0.00 0.00 3.21
2233 2269 7.468084 GCTTATTATTTTTGCCGAGGACACATA 60.468 37.037 0.00 0.00 0.00 2.29
2234 2270 5.554822 TTATTTTTGCCGAGGACACATAC 57.445 39.130 0.00 0.00 0.00 2.39
2235 2271 2.552599 TTTTGCCGAGGACACATACA 57.447 45.000 0.00 0.00 0.00 2.29
2236 2272 2.779755 TTTGCCGAGGACACATACAT 57.220 45.000 0.00 0.00 0.00 2.29
2237 2273 2.022764 TTGCCGAGGACACATACATG 57.977 50.000 0.00 0.00 0.00 3.21
2238 2274 0.901827 TGCCGAGGACACATACATGT 59.098 50.000 2.69 2.69 42.84 3.21
2239 2275 2.104170 TGCCGAGGACACATACATGTA 58.896 47.619 8.27 8.27 39.39 2.29
2240 2276 2.698274 TGCCGAGGACACATACATGTAT 59.302 45.455 12.75 12.75 39.39 2.29
2241 2277 3.892588 TGCCGAGGACACATACATGTATA 59.107 43.478 17.86 0.00 39.39 1.47
2242 2278 4.526650 TGCCGAGGACACATACATGTATAT 59.473 41.667 17.86 4.18 39.39 0.86
2243 2279 5.011635 TGCCGAGGACACATACATGTATATT 59.988 40.000 17.86 5.75 39.39 1.28
2244 2280 5.932303 GCCGAGGACACATACATGTATATTT 59.068 40.000 17.86 0.00 39.39 1.40
2245 2281 6.426937 GCCGAGGACACATACATGTATATTTT 59.573 38.462 17.86 3.41 39.39 1.82
2246 2282 7.571244 GCCGAGGACACATACATGTATATTTTG 60.571 40.741 17.86 14.04 39.39 2.44
2247 2283 7.655732 CCGAGGACACATACATGTATATTTTGA 59.344 37.037 17.86 0.00 39.39 2.69
2248 2284 8.487970 CGAGGACACATACATGTATATTTTGAC 58.512 37.037 17.86 12.03 39.39 3.18
2249 2285 9.325198 GAGGACACATACATGTATATTTTGACA 57.675 33.333 17.86 0.00 39.39 3.58
2250 2286 9.679661 AGGACACATACATGTATATTTTGACAA 57.320 29.630 17.86 0.00 39.39 3.18
2254 2290 9.897744 CACATACATGTATATTTTGACAATCCC 57.102 33.333 17.86 0.00 39.39 3.85
2255 2291 9.866655 ACATACATGTATATTTTGACAATCCCT 57.133 29.630 17.86 0.00 39.68 4.20
2257 2293 7.823745 ACATGTATATTTTGACAATCCCTCC 57.176 36.000 0.00 0.00 0.00 4.30
2258 2294 6.486657 ACATGTATATTTTGACAATCCCTCCG 59.513 38.462 0.00 0.00 0.00 4.63
2259 2295 5.996644 TGTATATTTTGACAATCCCTCCGT 58.003 37.500 0.00 0.00 0.00 4.69
2260 2296 6.419791 TGTATATTTTGACAATCCCTCCGTT 58.580 36.000 0.00 0.00 0.00 4.44
2261 2297 5.835113 ATATTTTGACAATCCCTCCGTTG 57.165 39.130 0.00 0.00 0.00 4.10
2262 2298 1.904287 TTTGACAATCCCTCCGTTGG 58.096 50.000 0.00 0.00 0.00 3.77
2263 2299 1.060729 TTGACAATCCCTCCGTTGGA 58.939 50.000 0.00 0.00 36.05 3.53
2264 2300 1.285280 TGACAATCCCTCCGTTGGAT 58.715 50.000 0.00 0.00 44.55 3.41
2265 2301 1.209504 TGACAATCCCTCCGTTGGATC 59.790 52.381 0.00 0.00 41.80 3.36
2266 2302 1.209504 GACAATCCCTCCGTTGGATCA 59.790 52.381 0.00 0.00 41.80 2.92
2267 2303 1.846439 ACAATCCCTCCGTTGGATCAT 59.154 47.619 0.00 0.00 41.80 2.45
2268 2304 2.158755 ACAATCCCTCCGTTGGATCATC 60.159 50.000 0.00 0.00 41.80 2.92
2269 2305 2.105477 CAATCCCTCCGTTGGATCATCT 59.895 50.000 0.00 0.00 41.80 2.90
2270 2306 1.879575 TCCCTCCGTTGGATCATCTT 58.120 50.000 0.00 0.00 0.00 2.40
2271 2307 3.040655 TCCCTCCGTTGGATCATCTTA 57.959 47.619 0.00 0.00 0.00 2.10
2272 2308 3.587498 TCCCTCCGTTGGATCATCTTAT 58.413 45.455 0.00 0.00 0.00 1.73
2273 2309 3.973973 TCCCTCCGTTGGATCATCTTATT 59.026 43.478 0.00 0.00 0.00 1.40
2274 2310 5.152193 TCCCTCCGTTGGATCATCTTATTA 58.848 41.667 0.00 0.00 0.00 0.98
2275 2311 5.011738 TCCCTCCGTTGGATCATCTTATTAC 59.988 44.000 0.00 0.00 0.00 1.89
2276 2312 5.221641 CCCTCCGTTGGATCATCTTATTACA 60.222 44.000 0.00 0.00 0.00 2.41
2277 2313 6.467677 CCTCCGTTGGATCATCTTATTACAT 58.532 40.000 0.00 0.00 0.00 2.29
2278 2314 6.936900 CCTCCGTTGGATCATCTTATTACATT 59.063 38.462 0.00 0.00 0.00 2.71
2279 2315 8.094548 CCTCCGTTGGATCATCTTATTACATTA 58.905 37.037 0.00 0.00 0.00 1.90
2280 2316 9.144747 CTCCGTTGGATCATCTTATTACATTAG 57.855 37.037 0.00 0.00 0.00 1.73
2281 2317 8.866093 TCCGTTGGATCATCTTATTACATTAGA 58.134 33.333 0.00 0.00 0.00 2.10
2282 2318 9.144747 CCGTTGGATCATCTTATTACATTAGAG 57.855 37.037 0.00 0.00 0.00 2.43
2283 2319 9.914131 CGTTGGATCATCTTATTACATTAGAGA 57.086 33.333 0.00 0.00 0.00 3.10
2291 2327 9.585099 CATCTTATTACATTAGAGAGATGCTCC 57.415 37.037 0.00 0.00 45.10 4.70
2292 2328 8.128322 TCTTATTACATTAGAGAGATGCTCCC 57.872 38.462 0.00 0.00 45.10 4.30
2293 2329 7.730332 TCTTATTACATTAGAGAGATGCTCCCA 59.270 37.037 0.00 0.00 45.10 4.37
2294 2330 6.949117 ATTACATTAGAGAGATGCTCCCAT 57.051 37.500 0.00 0.00 45.10 4.00
2295 2331 9.547279 TTATTACATTAGAGAGATGCTCCCATA 57.453 33.333 0.00 0.00 45.10 2.74
2296 2332 8.621126 ATTACATTAGAGAGATGCTCCCATAT 57.379 34.615 0.00 0.00 45.10 1.78
2297 2333 6.949117 ACATTAGAGAGATGCTCCCATATT 57.051 37.500 0.00 0.00 45.10 1.28
2298 2334 7.327064 ACATTAGAGAGATGCTCCCATATTT 57.673 36.000 0.00 0.00 45.10 1.40
2299 2335 8.441311 ACATTAGAGAGATGCTCCCATATTTA 57.559 34.615 0.00 0.00 45.10 1.40
2300 2336 9.055689 ACATTAGAGAGATGCTCCCATATTTAT 57.944 33.333 0.00 0.00 45.10 1.40
2301 2337 9.902684 CATTAGAGAGATGCTCCCATATTTATT 57.097 33.333 0.00 0.00 45.10 1.40
2303 2339 9.950496 TTAGAGAGATGCTCCCATATTTATTTC 57.050 33.333 0.00 0.00 45.10 2.17
2304 2340 7.982252 AGAGAGATGCTCCCATATTTATTTCA 58.018 34.615 0.00 0.00 45.10 2.69
2305 2341 8.613034 AGAGAGATGCTCCCATATTTATTTCAT 58.387 33.333 0.00 0.00 45.10 2.57
2306 2342 9.896645 GAGAGATGCTCCCATATTTATTTCATA 57.103 33.333 0.00 0.00 37.69 2.15
2344 2380 7.890879 TTTAAACCGTTAAAAGTTTAGCGAC 57.109 32.000 18.00 0.00 45.95 5.19
2345 2381 4.472691 AACCGTTAAAAGTTTAGCGACC 57.527 40.909 18.00 0.00 45.95 4.79
2346 2382 2.807967 ACCGTTAAAAGTTTAGCGACCC 59.192 45.455 18.00 0.00 45.95 4.46
2347 2383 3.069289 CCGTTAAAAGTTTAGCGACCCT 58.931 45.455 18.00 0.00 45.95 4.34
2348 2384 3.499537 CCGTTAAAAGTTTAGCGACCCTT 59.500 43.478 18.00 0.00 45.95 3.95
2349 2385 4.690280 CCGTTAAAAGTTTAGCGACCCTTA 59.310 41.667 18.00 0.00 45.95 2.69
2350 2386 5.179182 CCGTTAAAAGTTTAGCGACCCTTAA 59.821 40.000 18.00 0.00 45.95 1.85
2351 2387 6.073369 CGTTAAAAGTTTAGCGACCCTTAAC 58.927 40.000 12.88 0.00 45.95 2.01
2352 2388 6.073602 CGTTAAAAGTTTAGCGACCCTTAACT 60.074 38.462 12.88 0.00 45.95 2.24
2353 2389 7.116233 CGTTAAAAGTTTAGCGACCCTTAACTA 59.884 37.037 12.88 0.00 45.95 2.24
2354 2390 8.438513 GTTAAAAGTTTAGCGACCCTTAACTAG 58.561 37.037 0.00 0.00 41.23 2.57
2355 2391 5.735285 AAGTTTAGCGACCCTTAACTAGT 57.265 39.130 0.00 0.00 41.23 2.57
2356 2392 5.735285 AGTTTAGCGACCCTTAACTAGTT 57.265 39.130 13.68 13.68 40.54 2.24
2357 2393 5.718146 AGTTTAGCGACCCTTAACTAGTTC 58.282 41.667 12.39 0.00 40.54 3.01
2358 2394 5.479724 AGTTTAGCGACCCTTAACTAGTTCT 59.520 40.000 12.39 2.95 40.54 3.01
2359 2395 3.870633 AGCGACCCTTAACTAGTTCTG 57.129 47.619 12.39 6.11 0.00 3.02
2360 2396 3.163467 AGCGACCCTTAACTAGTTCTGT 58.837 45.455 12.39 5.23 0.00 3.41
2361 2397 3.056749 AGCGACCCTTAACTAGTTCTGTG 60.057 47.826 12.39 2.63 0.00 3.66
2362 2398 3.057033 GCGACCCTTAACTAGTTCTGTGA 60.057 47.826 12.39 0.00 0.00 3.58
2363 2399 4.483311 CGACCCTTAACTAGTTCTGTGAC 58.517 47.826 12.39 0.99 0.00 3.67
2364 2400 4.022589 CGACCCTTAACTAGTTCTGTGACA 60.023 45.833 12.39 0.00 0.00 3.58
2365 2401 5.470047 ACCCTTAACTAGTTCTGTGACAG 57.530 43.478 12.39 6.18 0.00 3.51
2366 2402 4.283722 ACCCTTAACTAGTTCTGTGACAGG 59.716 45.833 12.39 7.14 31.51 4.00
2367 2403 4.246458 CCTTAACTAGTTCTGTGACAGGC 58.754 47.826 12.39 6.37 31.51 4.85
2368 2404 4.021016 CCTTAACTAGTTCTGTGACAGGCT 60.021 45.833 12.39 13.27 31.51 4.58
2369 2405 5.185249 CCTTAACTAGTTCTGTGACAGGCTA 59.815 44.000 12.39 13.66 31.51 3.93
2370 2406 6.127310 CCTTAACTAGTTCTGTGACAGGCTAT 60.127 42.308 12.39 4.98 31.51 2.97
2371 2407 4.727507 ACTAGTTCTGTGACAGGCTATG 57.272 45.455 13.33 11.06 31.51 2.23
2372 2408 3.449018 ACTAGTTCTGTGACAGGCTATGG 59.551 47.826 13.33 7.53 31.51 2.74
2373 2409 2.260822 AGTTCTGTGACAGGCTATGGT 58.739 47.619 13.33 0.00 31.51 3.55
2374 2410 3.441101 AGTTCTGTGACAGGCTATGGTA 58.559 45.455 13.33 0.00 31.51 3.25
2375 2411 3.449018 AGTTCTGTGACAGGCTATGGTAG 59.551 47.826 13.33 0.00 31.51 3.18
2376 2412 3.382083 TCTGTGACAGGCTATGGTAGA 57.618 47.619 13.33 0.00 31.51 2.59
2377 2413 3.024547 TCTGTGACAGGCTATGGTAGAC 58.975 50.000 13.33 0.00 31.51 2.59
2378 2414 2.760650 CTGTGACAGGCTATGGTAGACA 59.239 50.000 4.28 0.00 35.81 3.41
2379 2415 2.496070 TGTGACAGGCTATGGTAGACAC 59.504 50.000 0.00 0.00 35.81 3.67
2380 2416 2.496070 GTGACAGGCTATGGTAGACACA 59.504 50.000 0.00 0.00 35.81 3.72
2381 2417 2.760650 TGACAGGCTATGGTAGACACAG 59.239 50.000 0.00 0.00 35.81 3.66
2382 2418 2.761208 GACAGGCTATGGTAGACACAGT 59.239 50.000 0.00 0.00 35.81 3.55
2383 2419 3.173965 ACAGGCTATGGTAGACACAGTT 58.826 45.455 0.00 0.00 35.81 3.16
2384 2420 3.583086 ACAGGCTATGGTAGACACAGTTT 59.417 43.478 0.00 0.00 35.81 2.66
2385 2421 4.041691 ACAGGCTATGGTAGACACAGTTTT 59.958 41.667 0.00 0.00 35.81 2.43
2386 2422 5.247564 ACAGGCTATGGTAGACACAGTTTTA 59.752 40.000 0.00 0.00 35.81 1.52
2387 2423 5.581085 CAGGCTATGGTAGACACAGTTTTAC 59.419 44.000 0.00 0.00 35.81 2.01
2388 2424 4.874396 GGCTATGGTAGACACAGTTTTACC 59.126 45.833 0.00 0.00 36.84 2.85
2389 2425 5.338137 GGCTATGGTAGACACAGTTTTACCT 60.338 44.000 10.87 0.00 37.15 3.08
2390 2426 6.127253 GGCTATGGTAGACACAGTTTTACCTA 60.127 42.308 10.87 0.00 37.15 3.08
2391 2427 7.418712 GGCTATGGTAGACACAGTTTTACCTAT 60.419 40.741 10.87 7.21 37.15 2.57
2392 2428 8.636213 GCTATGGTAGACACAGTTTTACCTATA 58.364 37.037 10.87 7.68 37.15 1.31
2443 2479 9.790344 ATACGTGATGATACTTAACTACTAGGT 57.210 33.333 0.00 0.00 0.00 3.08
2445 2481 9.050601 ACGTGATGATACTTAACTACTAGGTAC 57.949 37.037 0.00 0.00 0.00 3.34
2446 2482 9.049523 CGTGATGATACTTAACTACTAGGTACA 57.950 37.037 0.00 0.00 0.00 2.90
2451 2487 9.192642 TGATACTTAACTACTAGGTACAATGCA 57.807 33.333 0.00 0.00 0.00 3.96
2460 2496 9.899661 ACTACTAGGTACAATGCATAAAATTGA 57.100 29.630 0.00 0.00 38.21 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 6.780706 TCAACGGTGCAAAAGTTTTAAAAA 57.219 29.167 1.31 0.00 0.00 1.94
28 29 6.780706 TTCAACGGTGCAAAAGTTTTAAAA 57.219 29.167 0.00 0.00 0.00 1.52
29 30 6.347483 GGTTTCAACGGTGCAAAAGTTTTAAA 60.347 34.615 0.00 0.00 0.00 1.52
30 31 5.120363 GGTTTCAACGGTGCAAAAGTTTTAA 59.880 36.000 0.00 0.00 0.00 1.52
31 32 4.626172 GGTTTCAACGGTGCAAAAGTTTTA 59.374 37.500 0.00 0.00 0.00 1.52
32 33 3.433957 GGTTTCAACGGTGCAAAAGTTTT 59.566 39.130 0.00 0.00 0.00 2.43
33 34 2.997303 GGTTTCAACGGTGCAAAAGTTT 59.003 40.909 0.00 0.00 0.00 2.66
34 35 2.612604 GGTTTCAACGGTGCAAAAGTT 58.387 42.857 0.00 0.00 0.00 2.66
35 36 1.134936 GGGTTTCAACGGTGCAAAAGT 60.135 47.619 0.00 0.00 0.00 2.66
36 37 1.136110 AGGGTTTCAACGGTGCAAAAG 59.864 47.619 0.00 0.00 0.00 2.27
37 38 1.187087 AGGGTTTCAACGGTGCAAAA 58.813 45.000 0.00 0.00 0.00 2.44
38 39 1.187087 AAGGGTTTCAACGGTGCAAA 58.813 45.000 0.00 0.00 0.00 3.68
39 40 2.054232 TAAGGGTTTCAACGGTGCAA 57.946 45.000 0.00 0.00 0.00 4.08
40 41 1.677052 GTTAAGGGTTTCAACGGTGCA 59.323 47.619 0.00 0.00 0.00 4.57
41 42 1.951602 AGTTAAGGGTTTCAACGGTGC 59.048 47.619 0.00 0.00 0.00 5.01
42 43 4.383173 ACTAGTTAAGGGTTTCAACGGTG 58.617 43.478 0.00 0.00 0.00 4.94
43 44 4.694760 ACTAGTTAAGGGTTTCAACGGT 57.305 40.909 0.00 0.00 0.00 4.83
44 45 5.178809 CAGAACTAGTTAAGGGTTTCAACGG 59.821 44.000 8.42 0.00 0.00 4.44
45 46 5.756833 ACAGAACTAGTTAAGGGTTTCAACG 59.243 40.000 8.42 0.00 0.00 4.10
46 47 6.017357 CCACAGAACTAGTTAAGGGTTTCAAC 60.017 42.308 8.42 0.00 0.00 3.18
47 48 6.059484 CCACAGAACTAGTTAAGGGTTTCAA 58.941 40.000 8.42 0.00 0.00 2.69
48 49 5.455612 CCCACAGAACTAGTTAAGGGTTTCA 60.456 44.000 18.91 0.00 0.00 2.69
49 50 5.001874 CCCACAGAACTAGTTAAGGGTTTC 58.998 45.833 18.91 3.24 0.00 2.78
50 51 4.661709 TCCCACAGAACTAGTTAAGGGTTT 59.338 41.667 23.06 0.00 36.45 3.27
51 52 4.237018 TCCCACAGAACTAGTTAAGGGTT 58.763 43.478 23.06 0.00 36.45 4.11
52 53 3.865571 TCCCACAGAACTAGTTAAGGGT 58.134 45.455 23.06 12.08 36.45 4.34
53 54 4.833390 CTTCCCACAGAACTAGTTAAGGG 58.167 47.826 20.23 20.23 36.38 3.95
54 55 4.020128 AGCTTCCCACAGAACTAGTTAAGG 60.020 45.833 8.42 7.97 0.00 2.69
55 56 5.153950 AGCTTCCCACAGAACTAGTTAAG 57.846 43.478 8.42 7.80 0.00 1.85
56 57 4.591498 TGAGCTTCCCACAGAACTAGTTAA 59.409 41.667 8.42 0.00 0.00 2.01
57 58 4.157246 TGAGCTTCCCACAGAACTAGTTA 58.843 43.478 8.42 0.00 0.00 2.24
58 59 2.972713 TGAGCTTCCCACAGAACTAGTT 59.027 45.455 8.13 8.13 0.00 2.24
59 60 2.609747 TGAGCTTCCCACAGAACTAGT 58.390 47.619 0.00 0.00 0.00 2.57
60 61 3.902881 ATGAGCTTCCCACAGAACTAG 57.097 47.619 0.00 0.00 0.00 2.57
61 62 3.582647 TCAATGAGCTTCCCACAGAACTA 59.417 43.478 0.00 0.00 0.00 2.24
62 63 2.373169 TCAATGAGCTTCCCACAGAACT 59.627 45.455 0.00 0.00 0.00 3.01
63 64 2.783135 TCAATGAGCTTCCCACAGAAC 58.217 47.619 0.00 0.00 0.00 3.01
64 65 3.507162 TTCAATGAGCTTCCCACAGAA 57.493 42.857 0.00 0.00 0.00 3.02
65 66 3.726557 ATTCAATGAGCTTCCCACAGA 57.273 42.857 0.00 0.00 0.00 3.41
66 67 5.188434 TCTAATTCAATGAGCTTCCCACAG 58.812 41.667 0.00 0.00 0.00 3.66
67 68 5.178096 TCTAATTCAATGAGCTTCCCACA 57.822 39.130 0.00 0.00 0.00 4.17
68 69 6.705863 AATCTAATTCAATGAGCTTCCCAC 57.294 37.500 0.00 0.00 0.00 4.61
69 70 7.396907 TCAAAATCTAATTCAATGAGCTTCCCA 59.603 33.333 0.00 0.00 0.00 4.37
70 71 7.775120 TCAAAATCTAATTCAATGAGCTTCCC 58.225 34.615 0.00 0.00 0.00 3.97
71 72 8.465201 ACTCAAAATCTAATTCAATGAGCTTCC 58.535 33.333 0.00 0.00 37.03 3.46
72 73 9.500864 GACTCAAAATCTAATTCAATGAGCTTC 57.499 33.333 0.00 0.00 37.03 3.86
73 74 9.240734 AGACTCAAAATCTAATTCAATGAGCTT 57.759 29.630 0.00 0.00 37.03 3.74
74 75 8.804912 AGACTCAAAATCTAATTCAATGAGCT 57.195 30.769 0.00 0.00 37.03 4.09
75 76 7.850003 CGAGACTCAAAATCTAATTCAATGAGC 59.150 37.037 2.82 0.00 37.03 4.26
76 77 7.850003 GCGAGACTCAAAATCTAATTCAATGAG 59.150 37.037 2.82 0.00 38.91 2.90
77 78 7.464577 CGCGAGACTCAAAATCTAATTCAATGA 60.465 37.037 0.00 0.00 0.00 2.57
78 79 6.626488 CGCGAGACTCAAAATCTAATTCAATG 59.374 38.462 0.00 0.00 0.00 2.82
79 80 6.313905 ACGCGAGACTCAAAATCTAATTCAAT 59.686 34.615 15.93 0.00 0.00 2.57
80 81 5.637810 ACGCGAGACTCAAAATCTAATTCAA 59.362 36.000 15.93 0.00 0.00 2.69
81 82 5.062183 CACGCGAGACTCAAAATCTAATTCA 59.938 40.000 15.93 0.00 0.00 2.57
82 83 5.484958 CACGCGAGACTCAAAATCTAATTC 58.515 41.667 15.93 0.00 0.00 2.17
83 84 4.201724 GCACGCGAGACTCAAAATCTAATT 60.202 41.667 15.93 0.00 0.00 1.40
84 85 3.307242 GCACGCGAGACTCAAAATCTAAT 59.693 43.478 15.93 0.00 0.00 1.73
85 86 2.666508 GCACGCGAGACTCAAAATCTAA 59.333 45.455 15.93 0.00 0.00 2.10
86 87 2.259618 GCACGCGAGACTCAAAATCTA 58.740 47.619 15.93 0.00 0.00 1.98
87 88 1.071605 GCACGCGAGACTCAAAATCT 58.928 50.000 15.93 0.00 0.00 2.40
88 89 0.095417 GGCACGCGAGACTCAAAATC 59.905 55.000 15.93 0.00 0.00 2.17
89 90 0.602638 TGGCACGCGAGACTCAAAAT 60.603 50.000 15.93 0.00 0.00 1.82
90 91 0.812014 TTGGCACGCGAGACTCAAAA 60.812 50.000 15.93 0.00 0.00 2.44
91 92 0.812014 TTTGGCACGCGAGACTCAAA 60.812 50.000 15.93 13.80 0.00 2.69
92 93 0.812014 TTTTGGCACGCGAGACTCAA 60.812 50.000 15.93 8.19 0.00 3.02
93 94 0.812014 TTTTTGGCACGCGAGACTCA 60.812 50.000 15.93 1.40 0.00 3.41
94 95 0.110644 CTTTTTGGCACGCGAGACTC 60.111 55.000 15.93 0.00 0.00 3.36
95 96 1.507141 CCTTTTTGGCACGCGAGACT 61.507 55.000 15.93 0.00 0.00 3.24
96 97 1.082104 CCTTTTTGGCACGCGAGAC 60.082 57.895 15.93 8.23 0.00 3.36
97 98 0.605319 ATCCTTTTTGGCACGCGAGA 60.605 50.000 15.93 0.00 35.26 4.04
98 99 1.083489 TATCCTTTTTGGCACGCGAG 58.917 50.000 15.93 5.97 35.26 5.03
99 100 1.745232 ATATCCTTTTTGGCACGCGA 58.255 45.000 15.93 0.00 35.26 5.87
100 101 2.159448 TGAATATCCTTTTTGGCACGCG 60.159 45.455 3.53 3.53 35.26 6.01
101 102 3.502191 TGAATATCCTTTTTGGCACGC 57.498 42.857 0.00 0.00 35.26 5.34
102 103 8.647143 ATTAATTGAATATCCTTTTTGGCACG 57.353 30.769 0.00 0.00 35.26 5.34
138 139 6.594937 GCATGCCCTCAATTTTCTTTAATGAA 59.405 34.615 6.36 0.00 0.00 2.57
234 249 7.888021 ACCATAACAACAACTCAATTCCTATCA 59.112 33.333 0.00 0.00 0.00 2.15
598 618 0.740737 CCCAAGCGAATCCCATTCAC 59.259 55.000 0.00 0.00 39.22 3.18
826 857 7.390440 GGGTCCAATAATTTGATCGATATGACA 59.610 37.037 0.00 0.00 34.60 3.58
913 944 3.562343 ATCGGCAGTGTCTCTACTCTA 57.438 47.619 0.00 0.00 0.00 2.43
937 968 8.458573 TGTACCTCACAAGTCACATTAATTTT 57.541 30.769 0.00 0.00 32.95 1.82
994 1025 2.484651 CGTCCGTAGCACTCATAGCTAT 59.515 50.000 0.00 0.00 45.38 2.97
1052 1083 1.187087 GACCGGAACACTGAGAGGAT 58.813 55.000 9.46 0.00 0.00 3.24
1102 1133 2.852449 TGTCAATAGGCTCCCCAAGAAT 59.148 45.455 0.00 0.00 0.00 2.40
1158 1189 2.812591 GGCAGGTGCAGATCTATGAATG 59.187 50.000 4.01 0.00 44.36 2.67
1253 1284 3.442076 AGTCCTATTTCTCCTCCACGTT 58.558 45.455 0.00 0.00 0.00 3.99
1327 1362 2.360165 CCCCATGAGCTTTAGCAATGTC 59.640 50.000 4.33 0.00 45.16 3.06
1357 1392 2.970640 GTTCCCCTACTCCACCGAATAT 59.029 50.000 0.00 0.00 0.00 1.28
1606 1642 2.390225 AGCGGATACCTCTGATCCTT 57.610 50.000 0.52 0.00 40.77 3.36
1682 1718 5.532557 GCAATTCTTTCTTGCAAAGTACCT 58.467 37.500 0.00 0.00 46.34 3.08
1810 1846 6.042208 AGCTAATCCTCTGGAAAGTATGGTAC 59.958 42.308 0.00 0.00 34.34 3.34
1876 1912 3.130516 CCGAGGCTGTAACATAGTTGAGA 59.869 47.826 0.00 0.00 0.00 3.27
1880 1916 3.243434 CGATCCGAGGCTGTAACATAGTT 60.243 47.826 0.00 0.00 0.00 2.24
1987 2023 7.446001 TGGTGCAAAAGTTTTCAAAAATTCT 57.554 28.000 0.00 0.00 0.00 2.40
1988 2024 8.585436 CAATGGTGCAAAAGTTTTCAAAAATTC 58.415 29.630 0.00 0.00 0.00 2.17
1989 2025 8.302438 TCAATGGTGCAAAAGTTTTCAAAAATT 58.698 25.926 0.00 0.00 0.00 1.82
1990 2026 7.824672 TCAATGGTGCAAAAGTTTTCAAAAAT 58.175 26.923 0.00 0.00 0.00 1.82
1991 2027 7.206981 TCAATGGTGCAAAAGTTTTCAAAAA 57.793 28.000 0.00 0.00 0.00 1.94
1992 2028 6.808008 TCAATGGTGCAAAAGTTTTCAAAA 57.192 29.167 0.00 0.00 0.00 2.44
1993 2029 6.808008 TTCAATGGTGCAAAAGTTTTCAAA 57.192 29.167 0.00 0.00 0.00 2.69
1994 2030 6.348868 GGTTTCAATGGTGCAAAAGTTTTCAA 60.349 34.615 0.00 0.00 0.00 2.69
1995 2031 5.123027 GGTTTCAATGGTGCAAAAGTTTTCA 59.877 36.000 0.00 0.00 0.00 2.69
1996 2032 5.448496 GGGTTTCAATGGTGCAAAAGTTTTC 60.448 40.000 0.00 0.00 0.00 2.29
1997 2033 4.397730 GGGTTTCAATGGTGCAAAAGTTTT 59.602 37.500 0.00 0.00 0.00 2.43
1998 2034 3.944650 GGGTTTCAATGGTGCAAAAGTTT 59.055 39.130 0.00 0.00 0.00 2.66
1999 2035 3.199727 AGGGTTTCAATGGTGCAAAAGTT 59.800 39.130 0.00 0.00 0.00 2.66
2000 2036 2.771372 AGGGTTTCAATGGTGCAAAAGT 59.229 40.909 0.00 0.00 0.00 2.66
2001 2037 3.473923 AGGGTTTCAATGGTGCAAAAG 57.526 42.857 0.00 0.00 0.00 2.27
2002 2038 3.922171 AAGGGTTTCAATGGTGCAAAA 57.078 38.095 0.00 0.00 0.00 2.44
2003 2039 4.407296 AGTTAAGGGTTTCAATGGTGCAAA 59.593 37.500 0.00 0.00 0.00 3.68
2004 2040 3.964031 AGTTAAGGGTTTCAATGGTGCAA 59.036 39.130 0.00 0.00 0.00 4.08
2005 2041 3.571590 AGTTAAGGGTTTCAATGGTGCA 58.428 40.909 0.00 0.00 0.00 4.57
2006 2042 4.765339 ACTAGTTAAGGGTTTCAATGGTGC 59.235 41.667 0.00 0.00 0.00 5.01
2007 2043 6.715264 AGAACTAGTTAAGGGTTTCAATGGTG 59.285 38.462 8.42 0.00 0.00 4.17
2008 2044 6.715264 CAGAACTAGTTAAGGGTTTCAATGGT 59.285 38.462 8.42 0.00 0.00 3.55
2009 2045 6.715264 ACAGAACTAGTTAAGGGTTTCAATGG 59.285 38.462 8.42 0.00 0.00 3.16
2010 2046 7.308589 CCACAGAACTAGTTAAGGGTTTCAATG 60.309 40.741 8.42 0.00 0.00 2.82
2011 2047 6.715264 CCACAGAACTAGTTAAGGGTTTCAAT 59.285 38.462 8.42 0.00 0.00 2.57
2012 2048 6.059484 CCACAGAACTAGTTAAGGGTTTCAA 58.941 40.000 8.42 0.00 0.00 2.69
2013 2049 5.617252 CCACAGAACTAGTTAAGGGTTTCA 58.383 41.667 8.42 0.00 0.00 2.69
2014 2050 4.454847 GCCACAGAACTAGTTAAGGGTTTC 59.545 45.833 8.42 0.00 0.00 2.78
2015 2051 4.141344 TGCCACAGAACTAGTTAAGGGTTT 60.141 41.667 8.42 0.00 0.00 3.27
2016 2052 3.393278 TGCCACAGAACTAGTTAAGGGTT 59.607 43.478 8.42 0.00 0.00 4.11
2017 2053 2.976882 TGCCACAGAACTAGTTAAGGGT 59.023 45.455 8.42 1.77 0.00 4.34
2018 2054 3.695830 TGCCACAGAACTAGTTAAGGG 57.304 47.619 8.42 9.13 0.00 3.95
2019 2055 3.437049 GCTTGCCACAGAACTAGTTAAGG 59.563 47.826 8.42 9.13 0.00 2.69
2020 2056 4.065088 TGCTTGCCACAGAACTAGTTAAG 58.935 43.478 8.42 7.80 0.00 1.85
2021 2057 3.813166 GTGCTTGCCACAGAACTAGTTAA 59.187 43.478 8.42 0.00 44.06 2.01
2022 2058 3.399330 GTGCTTGCCACAGAACTAGTTA 58.601 45.455 8.42 0.00 44.06 2.24
2023 2059 2.222027 GTGCTTGCCACAGAACTAGTT 58.778 47.619 8.13 8.13 44.06 2.24
2024 2060 1.884235 GTGCTTGCCACAGAACTAGT 58.116 50.000 0.00 0.00 44.06 2.57
2033 2069 3.708563 TTTTCTACAAGTGCTTGCCAC 57.291 42.857 11.43 0.00 44.03 5.01
2034 2070 3.255642 GGATTTTCTACAAGTGCTTGCCA 59.744 43.478 11.43 0.18 44.03 4.92
2035 2071 3.507622 AGGATTTTCTACAAGTGCTTGCC 59.492 43.478 11.43 3.05 44.03 4.52
2036 2072 4.773323 AGGATTTTCTACAAGTGCTTGC 57.227 40.909 11.43 0.00 44.03 4.01
2037 2073 7.440523 ACTTAGGATTTTCTACAAGTGCTTG 57.559 36.000 10.09 10.09 45.58 4.01
2038 2074 8.465273 AAACTTAGGATTTTCTACAAGTGCTT 57.535 30.769 0.00 0.00 0.00 3.91
2039 2075 8.465273 AAAACTTAGGATTTTCTACAAGTGCT 57.535 30.769 0.00 0.00 0.00 4.40
2040 2076 8.349983 TGAAAACTTAGGATTTTCTACAAGTGC 58.650 33.333 10.56 0.00 43.47 4.40
2095 2131 9.653287 CGTTGGATCATGTTATATTATAGGTGT 57.347 33.333 0.00 0.00 0.00 4.16
2096 2132 9.098355 CCGTTGGATCATGTTATATTATAGGTG 57.902 37.037 0.00 0.00 0.00 4.00
2097 2133 9.042450 TCCGTTGGATCATGTTATATTATAGGT 57.958 33.333 0.00 0.00 0.00 3.08
2098 2134 9.534565 CTCCGTTGGATCATGTTATATTATAGG 57.465 37.037 0.00 0.00 0.00 2.57
2099 2135 9.534565 CCTCCGTTGGATCATGTTATATTATAG 57.465 37.037 0.00 0.00 0.00 1.31
2100 2136 8.482943 CCCTCCGTTGGATCATGTTATATTATA 58.517 37.037 0.00 0.00 0.00 0.98
2101 2137 7.182026 TCCCTCCGTTGGATCATGTTATATTAT 59.818 37.037 0.00 0.00 0.00 1.28
2102 2138 6.499000 TCCCTCCGTTGGATCATGTTATATTA 59.501 38.462 0.00 0.00 0.00 0.98
2103 2139 5.309543 TCCCTCCGTTGGATCATGTTATATT 59.690 40.000 0.00 0.00 0.00 1.28
2104 2140 4.844085 TCCCTCCGTTGGATCATGTTATAT 59.156 41.667 0.00 0.00 0.00 0.86
2105 2141 4.228010 TCCCTCCGTTGGATCATGTTATA 58.772 43.478 0.00 0.00 0.00 0.98
2106 2142 3.045634 TCCCTCCGTTGGATCATGTTAT 58.954 45.455 0.00 0.00 0.00 1.89
2107 2143 2.473070 TCCCTCCGTTGGATCATGTTA 58.527 47.619 0.00 0.00 0.00 2.41
2108 2144 1.285280 TCCCTCCGTTGGATCATGTT 58.715 50.000 0.00 0.00 0.00 2.71
2109 2145 1.511613 ATCCCTCCGTTGGATCATGT 58.488 50.000 0.00 0.00 38.20 3.21
2110 2146 2.645838 AATCCCTCCGTTGGATCATG 57.354 50.000 0.00 0.00 41.80 3.07
2111 2147 4.788925 TTTAATCCCTCCGTTGGATCAT 57.211 40.909 0.00 0.00 41.80 2.45
2112 2148 4.577988 TTTTAATCCCTCCGTTGGATCA 57.422 40.909 0.00 0.00 41.80 2.92
2132 2168 5.642063 CCAGGACACATACAGTCGTATTTTT 59.358 40.000 0.00 0.00 36.11 1.94
2133 2169 5.046878 TCCAGGACACATACAGTCGTATTTT 60.047 40.000 0.00 0.00 36.11 1.82
2134 2170 4.464951 TCCAGGACACATACAGTCGTATTT 59.535 41.667 0.00 0.00 36.11 1.40
2135 2171 4.021229 TCCAGGACACATACAGTCGTATT 58.979 43.478 0.00 0.00 36.11 1.89
2136 2172 3.380637 GTCCAGGACACATACAGTCGTAT 59.619 47.826 15.43 0.00 36.87 3.06
2137 2173 2.751259 GTCCAGGACACATACAGTCGTA 59.249 50.000 15.43 0.00 36.87 3.43
2138 2174 1.544691 GTCCAGGACACATACAGTCGT 59.455 52.381 15.43 0.00 36.87 4.34
2139 2175 1.544246 TGTCCAGGACACATACAGTCG 59.456 52.381 19.21 0.00 37.67 4.18
2140 2176 3.678056 TTGTCCAGGACACATACAGTC 57.322 47.619 22.87 0.00 42.60 3.51
2141 2177 4.431416 TTTTGTCCAGGACACATACAGT 57.569 40.909 22.87 0.00 42.60 3.55
2174 2210 9.208022 GCTCACTGCAACATAAATATATACTGA 57.792 33.333 0.00 0.00 42.31 3.41
2175 2211 9.212641 AGCTCACTGCAACATAAATATATACTG 57.787 33.333 0.00 0.00 45.94 2.74
2176 2212 9.212641 CAGCTCACTGCAACATAAATATATACT 57.787 33.333 0.00 0.00 45.94 2.12
2177 2213 9.208022 TCAGCTCACTGCAACATAAATATATAC 57.792 33.333 0.00 0.00 44.10 1.47
2178 2214 9.777297 TTCAGCTCACTGCAACATAAATATATA 57.223 29.630 0.00 0.00 44.10 0.86
2179 2215 8.681486 TTCAGCTCACTGCAACATAAATATAT 57.319 30.769 0.00 0.00 44.10 0.86
2180 2216 8.504812 TTTCAGCTCACTGCAACATAAATATA 57.495 30.769 0.00 0.00 44.10 0.86
2181 2217 7.395190 TTTCAGCTCACTGCAACATAAATAT 57.605 32.000 0.00 0.00 44.10 1.28
2182 2218 6.816134 TTTCAGCTCACTGCAACATAAATA 57.184 33.333 0.00 0.00 44.10 1.40
2183 2219 5.710513 TTTCAGCTCACTGCAACATAAAT 57.289 34.783 0.00 0.00 44.10 1.40
2184 2220 5.463286 CATTTCAGCTCACTGCAACATAAA 58.537 37.500 0.00 0.00 44.10 1.40
2185 2221 4.616604 GCATTTCAGCTCACTGCAACATAA 60.617 41.667 0.00 0.00 44.10 1.90
2186 2222 3.119743 GCATTTCAGCTCACTGCAACATA 60.120 43.478 0.00 0.00 44.10 2.29
2187 2223 2.352421 GCATTTCAGCTCACTGCAACAT 60.352 45.455 0.00 0.00 44.10 2.71
2188 2224 1.001048 GCATTTCAGCTCACTGCAACA 60.001 47.619 0.00 0.00 44.10 3.33
2189 2225 1.268899 AGCATTTCAGCTCACTGCAAC 59.731 47.619 7.33 0.00 42.18 4.17
2190 2226 1.612676 AGCATTTCAGCTCACTGCAA 58.387 45.000 7.33 0.00 42.18 4.08
2191 2227 1.612676 AAGCATTTCAGCTCACTGCA 58.387 45.000 7.33 0.00 45.89 4.41
2192 2228 4.367386 AATAAGCATTTCAGCTCACTGC 57.633 40.909 0.00 0.00 45.89 4.40
2193 2229 8.922058 AAAATAATAAGCATTTCAGCTCACTG 57.078 30.769 0.00 0.00 45.89 3.66
2194 2230 9.362539 CAAAAATAATAAGCATTTCAGCTCACT 57.637 29.630 0.00 0.00 45.89 3.41
2195 2231 8.112449 GCAAAAATAATAAGCATTTCAGCTCAC 58.888 33.333 0.00 0.00 45.89 3.51
2196 2232 7.278424 GGCAAAAATAATAAGCATTTCAGCTCA 59.722 33.333 0.00 0.00 45.89 4.26
2197 2233 7.515684 CGGCAAAAATAATAAGCATTTCAGCTC 60.516 37.037 0.00 0.00 45.89 4.09
2199 2235 6.255453 TCGGCAAAAATAATAAGCATTTCAGC 59.745 34.615 0.00 0.00 0.00 4.26
2200 2236 7.043192 CCTCGGCAAAAATAATAAGCATTTCAG 60.043 37.037 0.00 0.00 0.00 3.02
2201 2237 6.756074 CCTCGGCAAAAATAATAAGCATTTCA 59.244 34.615 0.00 0.00 0.00 2.69
2202 2238 6.978080 TCCTCGGCAAAAATAATAAGCATTTC 59.022 34.615 0.00 0.00 0.00 2.17
2203 2239 6.756542 GTCCTCGGCAAAAATAATAAGCATTT 59.243 34.615 0.00 0.00 0.00 2.32
2204 2240 6.127479 TGTCCTCGGCAAAAATAATAAGCATT 60.127 34.615 0.00 0.00 0.00 3.56
2205 2241 5.359576 TGTCCTCGGCAAAAATAATAAGCAT 59.640 36.000 0.00 0.00 0.00 3.79
2206 2242 4.702612 TGTCCTCGGCAAAAATAATAAGCA 59.297 37.500 0.00 0.00 0.00 3.91
2207 2243 5.034797 GTGTCCTCGGCAAAAATAATAAGC 58.965 41.667 0.00 0.00 0.00 3.09
2208 2244 6.189677 TGTGTCCTCGGCAAAAATAATAAG 57.810 37.500 0.00 0.00 0.00 1.73
2209 2245 6.767524 ATGTGTCCTCGGCAAAAATAATAA 57.232 33.333 0.00 0.00 0.00 1.40
2210 2246 6.824196 TGTATGTGTCCTCGGCAAAAATAATA 59.176 34.615 0.00 0.00 0.00 0.98
2211 2247 5.650266 TGTATGTGTCCTCGGCAAAAATAAT 59.350 36.000 0.00 0.00 0.00 1.28
2212 2248 5.004448 TGTATGTGTCCTCGGCAAAAATAA 58.996 37.500 0.00 0.00 0.00 1.40
2213 2249 4.580868 TGTATGTGTCCTCGGCAAAAATA 58.419 39.130 0.00 0.00 0.00 1.40
2214 2250 3.417101 TGTATGTGTCCTCGGCAAAAAT 58.583 40.909 0.00 0.00 0.00 1.82
2215 2251 2.852449 TGTATGTGTCCTCGGCAAAAA 58.148 42.857 0.00 0.00 0.00 1.94
2216 2252 2.552599 TGTATGTGTCCTCGGCAAAA 57.447 45.000 0.00 0.00 0.00 2.44
2217 2253 2.290008 ACATGTATGTGTCCTCGGCAAA 60.290 45.455 0.00 0.00 40.03 3.68
2218 2254 1.277842 ACATGTATGTGTCCTCGGCAA 59.722 47.619 0.00 0.00 40.03 4.52
2219 2255 0.901827 ACATGTATGTGTCCTCGGCA 59.098 50.000 0.00 0.00 40.03 5.69
2220 2256 2.882927 TACATGTATGTGTCCTCGGC 57.117 50.000 0.08 0.00 41.89 5.54
2221 2257 7.655732 TCAAAATATACATGTATGTGTCCTCGG 59.344 37.037 25.48 8.39 41.89 4.63
2222 2258 8.487970 GTCAAAATATACATGTATGTGTCCTCG 58.512 37.037 25.48 8.68 41.89 4.63
2223 2259 9.325198 TGTCAAAATATACATGTATGTGTCCTC 57.675 33.333 25.48 12.76 41.89 3.71
2224 2260 9.679661 TTGTCAAAATATACATGTATGTGTCCT 57.320 29.630 25.48 3.93 41.89 3.85
2228 2264 9.897744 GGGATTGTCAAAATATACATGTATGTG 57.102 33.333 25.48 17.43 41.89 3.21
2229 2265 9.866655 AGGGATTGTCAAAATATACATGTATGT 57.133 29.630 25.48 17.72 44.48 2.29
2231 2267 9.520515 GGAGGGATTGTCAAAATATACATGTAT 57.479 33.333 21.57 21.57 0.00 2.29
2232 2268 7.659799 CGGAGGGATTGTCAAAATATACATGTA 59.340 37.037 8.27 8.27 0.00 2.29
2233 2269 6.486657 CGGAGGGATTGTCAAAATATACATGT 59.513 38.462 2.69 2.69 0.00 3.21
2234 2270 6.486657 ACGGAGGGATTGTCAAAATATACATG 59.513 38.462 0.00 0.00 0.00 3.21
2235 2271 6.601332 ACGGAGGGATTGTCAAAATATACAT 58.399 36.000 0.00 0.00 0.00 2.29
2236 2272 5.996644 ACGGAGGGATTGTCAAAATATACA 58.003 37.500 0.00 0.00 0.00 2.29
2237 2273 6.238648 CCAACGGAGGGATTGTCAAAATATAC 60.239 42.308 0.00 0.00 0.00 1.47
2238 2274 5.825679 CCAACGGAGGGATTGTCAAAATATA 59.174 40.000 0.00 0.00 0.00 0.86
2239 2275 4.644685 CCAACGGAGGGATTGTCAAAATAT 59.355 41.667 0.00 0.00 0.00 1.28
2240 2276 4.013728 CCAACGGAGGGATTGTCAAAATA 58.986 43.478 0.00 0.00 0.00 1.40
2241 2277 2.825532 CCAACGGAGGGATTGTCAAAAT 59.174 45.455 0.00 0.00 0.00 1.82
2242 2278 2.158593 TCCAACGGAGGGATTGTCAAAA 60.159 45.455 0.00 0.00 0.00 2.44
2243 2279 1.422024 TCCAACGGAGGGATTGTCAAA 59.578 47.619 0.00 0.00 0.00 2.69
2244 2280 1.060729 TCCAACGGAGGGATTGTCAA 58.939 50.000 0.00 0.00 0.00 3.18
2245 2281 1.209504 GATCCAACGGAGGGATTGTCA 59.790 52.381 6.27 0.00 45.05 3.58
2246 2282 1.209504 TGATCCAACGGAGGGATTGTC 59.790 52.381 6.27 0.00 45.05 3.18
2247 2283 1.285280 TGATCCAACGGAGGGATTGT 58.715 50.000 6.27 0.00 45.05 2.71
2248 2284 2.105477 AGATGATCCAACGGAGGGATTG 59.895 50.000 6.27 0.00 45.05 2.67
2249 2285 2.412591 AGATGATCCAACGGAGGGATT 58.587 47.619 6.27 0.00 45.05 3.01
2251 2287 1.879575 AAGATGATCCAACGGAGGGA 58.120 50.000 0.00 0.00 39.14 4.20
2252 2288 4.357918 AATAAGATGATCCAACGGAGGG 57.642 45.455 0.00 0.00 34.05 4.30
2253 2289 5.853936 TGTAATAAGATGATCCAACGGAGG 58.146 41.667 0.00 0.00 34.05 4.30
2254 2290 7.969536 AATGTAATAAGATGATCCAACGGAG 57.030 36.000 0.00 0.00 34.05 4.63
2255 2291 8.866093 TCTAATGTAATAAGATGATCCAACGGA 58.134 33.333 0.00 0.00 35.55 4.69
2256 2292 9.144747 CTCTAATGTAATAAGATGATCCAACGG 57.855 37.037 0.00 0.00 0.00 4.44
2257 2293 9.914131 TCTCTAATGTAATAAGATGATCCAACG 57.086 33.333 0.00 0.00 0.00 4.10
2265 2301 9.585099 GGAGCATCTCTCTAATGTAATAAGATG 57.415 37.037 0.00 0.00 41.60 2.90
2266 2302 8.757877 GGGAGCATCTCTCTAATGTAATAAGAT 58.242 37.037 0.00 0.00 41.60 2.40
2267 2303 7.730332 TGGGAGCATCTCTCTAATGTAATAAGA 59.270 37.037 0.00 0.00 41.60 2.10
2268 2304 7.901029 TGGGAGCATCTCTCTAATGTAATAAG 58.099 38.462 0.00 0.00 41.60 1.73
2269 2305 7.855784 TGGGAGCATCTCTCTAATGTAATAA 57.144 36.000 0.00 0.00 41.60 1.40
2270 2306 9.720874 ATATGGGAGCATCTCTCTAATGTAATA 57.279 33.333 0.00 0.00 41.60 0.98
2271 2307 6.949117 ATGGGAGCATCTCTCTAATGTAAT 57.051 37.500 0.00 0.00 41.60 1.89
2272 2308 8.441311 AATATGGGAGCATCTCTCTAATGTAA 57.559 34.615 0.00 0.00 41.60 2.41
2273 2309 8.441311 AAATATGGGAGCATCTCTCTAATGTA 57.559 34.615 0.00 0.00 41.60 2.29
2274 2310 6.949117 AATATGGGAGCATCTCTCTAATGT 57.051 37.500 0.00 0.00 41.60 2.71
2275 2311 9.902684 AATAAATATGGGAGCATCTCTCTAATG 57.097 33.333 0.00 0.00 41.60 1.90
2277 2313 9.950496 GAAATAAATATGGGAGCATCTCTCTAA 57.050 33.333 0.00 0.00 41.60 2.10
2278 2314 9.104713 TGAAATAAATATGGGAGCATCTCTCTA 57.895 33.333 0.00 0.00 41.60 2.43
2279 2315 7.982252 TGAAATAAATATGGGAGCATCTCTCT 58.018 34.615 0.00 0.00 41.60 3.10
2280 2316 8.804912 ATGAAATAAATATGGGAGCATCTCTC 57.195 34.615 0.00 0.00 35.73 3.20
2319 2355 7.430793 GGTCGCTAAACTTTTAACGGTTTAAAA 59.569 33.333 0.00 3.86 42.39 1.52
2320 2356 6.909895 GGTCGCTAAACTTTTAACGGTTTAAA 59.090 34.615 0.00 1.51 37.42 1.52
2321 2357 6.426327 GGTCGCTAAACTTTTAACGGTTTAA 58.574 36.000 0.00 0.00 37.42 1.52
2322 2358 5.049749 GGGTCGCTAAACTTTTAACGGTTTA 60.050 40.000 0.00 10.07 37.01 2.01
2323 2359 4.261155 GGGTCGCTAAACTTTTAACGGTTT 60.261 41.667 0.00 9.12 38.82 3.27
2324 2360 3.250762 GGGTCGCTAAACTTTTAACGGTT 59.749 43.478 0.00 0.00 34.15 4.44
2325 2361 2.807967 GGGTCGCTAAACTTTTAACGGT 59.192 45.455 5.06 0.00 34.15 4.83
2326 2362 3.069289 AGGGTCGCTAAACTTTTAACGG 58.931 45.455 5.06 0.00 34.15 4.44
2327 2363 4.737353 AAGGGTCGCTAAACTTTTAACG 57.263 40.909 0.00 0.00 34.54 3.18
2328 2364 7.194607 AGTTAAGGGTCGCTAAACTTTTAAC 57.805 36.000 0.00 0.00 33.33 2.01
2329 2365 8.150296 ACTAGTTAAGGGTCGCTAAACTTTTAA 58.850 33.333 0.00 0.00 32.85 1.52
2330 2366 7.670364 ACTAGTTAAGGGTCGCTAAACTTTTA 58.330 34.615 0.00 0.00 32.85 1.52
2331 2367 6.528321 ACTAGTTAAGGGTCGCTAAACTTTT 58.472 36.000 0.00 0.00 32.85 2.27
2332 2368 6.106648 ACTAGTTAAGGGTCGCTAAACTTT 57.893 37.500 0.00 0.00 32.85 2.66
2333 2369 5.735285 ACTAGTTAAGGGTCGCTAAACTT 57.265 39.130 0.00 0.00 32.85 2.66
2334 2370 5.479724 AGAACTAGTTAAGGGTCGCTAAACT 59.520 40.000 8.42 0.00 34.86 2.66
2335 2371 5.575995 CAGAACTAGTTAAGGGTCGCTAAAC 59.424 44.000 8.42 0.00 0.00 2.01
2336 2372 5.244626 ACAGAACTAGTTAAGGGTCGCTAAA 59.755 40.000 8.42 0.00 0.00 1.85
2337 2373 4.768968 ACAGAACTAGTTAAGGGTCGCTAA 59.231 41.667 8.42 0.00 0.00 3.09
2338 2374 4.157289 CACAGAACTAGTTAAGGGTCGCTA 59.843 45.833 8.42 0.00 0.00 4.26
2339 2375 3.056749 CACAGAACTAGTTAAGGGTCGCT 60.057 47.826 8.42 0.00 0.00 4.93
2340 2376 3.057033 TCACAGAACTAGTTAAGGGTCGC 60.057 47.826 8.42 0.00 0.00 5.19
2341 2377 4.022589 TGTCACAGAACTAGTTAAGGGTCG 60.023 45.833 8.42 1.23 0.00 4.79
2342 2378 5.464030 TGTCACAGAACTAGTTAAGGGTC 57.536 43.478 8.42 3.93 0.00 4.46
2343 2379 4.283722 CCTGTCACAGAACTAGTTAAGGGT 59.716 45.833 6.30 1.77 32.44 4.34
2344 2380 4.822026 CCTGTCACAGAACTAGTTAAGGG 58.178 47.826 6.30 5.39 32.44 3.95
2345 2381 4.021016 AGCCTGTCACAGAACTAGTTAAGG 60.021 45.833 6.30 8.12 32.44 2.69
2346 2382 5.140747 AGCCTGTCACAGAACTAGTTAAG 57.859 43.478 6.30 6.67 32.44 1.85
2347 2383 6.351033 CCATAGCCTGTCACAGAACTAGTTAA 60.351 42.308 6.30 0.00 32.44 2.01
2348 2384 5.127194 CCATAGCCTGTCACAGAACTAGTTA 59.873 44.000 6.30 0.00 32.44 2.24
2349 2385 4.081420 CCATAGCCTGTCACAGAACTAGTT 60.081 45.833 8.13 8.13 32.44 2.24
2350 2386 3.449018 CCATAGCCTGTCACAGAACTAGT 59.551 47.826 6.30 0.00 32.44 2.57
2351 2387 3.449018 ACCATAGCCTGTCACAGAACTAG 59.551 47.826 6.30 0.09 32.44 2.57
2352 2388 3.441101 ACCATAGCCTGTCACAGAACTA 58.559 45.455 6.30 8.16 32.44 2.24
2353 2389 2.260822 ACCATAGCCTGTCACAGAACT 58.739 47.619 6.30 5.94 32.44 3.01
2354 2390 2.770164 ACCATAGCCTGTCACAGAAC 57.230 50.000 6.30 0.00 32.44 3.01
2355 2391 3.447586 GTCTACCATAGCCTGTCACAGAA 59.552 47.826 6.30 0.00 32.44 3.02
2356 2392 3.024547 GTCTACCATAGCCTGTCACAGA 58.975 50.000 6.30 0.00 32.44 3.41
2357 2393 2.760650 TGTCTACCATAGCCTGTCACAG 59.239 50.000 0.00 0.00 0.00 3.66
2358 2394 2.496070 GTGTCTACCATAGCCTGTCACA 59.504 50.000 0.00 0.00 0.00 3.58
2359 2395 2.496070 TGTGTCTACCATAGCCTGTCAC 59.504 50.000 0.00 0.00 0.00 3.67
2360 2396 2.760650 CTGTGTCTACCATAGCCTGTCA 59.239 50.000 0.00 0.00 0.00 3.58
2361 2397 2.761208 ACTGTGTCTACCATAGCCTGTC 59.239 50.000 0.00 0.00 35.82 3.51
2362 2398 2.821437 ACTGTGTCTACCATAGCCTGT 58.179 47.619 0.00 0.00 35.82 4.00
2363 2399 3.895232 AACTGTGTCTACCATAGCCTG 57.105 47.619 0.00 0.00 35.82 4.85
2364 2400 4.910458 AAAACTGTGTCTACCATAGCCT 57.090 40.909 0.00 0.00 35.82 4.58
2365 2401 4.874396 GGTAAAACTGTGTCTACCATAGCC 59.126 45.833 7.85 0.00 35.82 3.93
2366 2402 5.731591 AGGTAAAACTGTGTCTACCATAGC 58.268 41.667 12.89 0.00 36.96 2.97
2417 2453 9.790344 ACCTAGTAGTTAAGTATCATCACGTAT 57.210 33.333 0.00 0.00 0.00 3.06
2419 2455 9.050601 GTACCTAGTAGTTAAGTATCATCACGT 57.949 37.037 0.00 0.00 0.00 4.49
2420 2456 9.049523 TGTACCTAGTAGTTAAGTATCATCACG 57.950 37.037 0.00 0.00 0.00 4.35
2425 2461 9.192642 TGCATTGTACCTAGTAGTTAAGTATCA 57.807 33.333 0.00 0.00 0.00 2.15
2434 2470 9.899661 TCAATTTTATGCATTGTACCTAGTAGT 57.100 29.630 3.54 0.00 33.91 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.