AutoCloner

Multiple sequence alignment - TraesCS3D01G338400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3D01G338400	chr3D	100.000	3127	0	0	1	3127	451708823	451711949	0.000000e+00	5775.0
1	TraesCS3D01G338400	chr3D	89.240	2091	88	55	523	2587	451884909	451886888	0.000000e+00	2488.0
2	TraesCS3D01G338400	chr3B	90.596	3190	133	64	1	3124	593162582	593165670	0.000000e+00	4074.0
3	TraesCS3D01G338400	chr3B	87.629	1940	93	55	687	2584	593540782	593542616	0.000000e+00	2117.0
4	TraesCS3D01G338400	chr3B	94.340	53	3	0	1093	1145	228690953	228690901	7.190000e-12	82.4
5	TraesCS3D01G338400	chr3A	92.801	2667	87	48	1	2587	594491173	594493814	0.000000e+00	3764.0
6	TraesCS3D01G338400	chr3A	94.340	53	3	0	1093	1145	170811542	170811594	7.190000e-12	82.4
7	TraesCS3D01G338400	chr3A	91.667	48	4	0	1094	1141	170658715	170658762	2.010000e-07	67.6
8	TraesCS3D01G338400	chr1A	85.234	535	63	11	2587	3113	491154590	491155116	1.280000e-148	536.0
9	TraesCS3D01G338400	chr1A	88.636	308	35	0	1820	2127	495192326	495192019	2.940000e-100	375.0
10	TraesCS3D01G338400	chr1A	86.111	324	43	2	1278	1600	495192933	495192611	6.420000e-92	348.0
11	TraesCS3D01G338400	chr1A	88.889	108	9	2	1041	1145	495193128	495193021	2.530000e-26	130.0
12	TraesCS3D01G338400	chr1B	88.636	308	35	0	1820	2127	533324012	533323705	2.940000e-100	375.0
13	TraesCS3D01G338400	chr1B	85.185	324	46	2	1278	1600	533324652	533324330	6.460000e-87	331.0
14	TraesCS3D01G338400	chr1D	88.312	308	36	0	1820	2127	397973287	397972980	1.370000e-98	370.0
15	TraesCS3D01G338400	chr1D	84.969	326	45	4	1278	1601	397973932	397973609	8.360000e-86	327.0
16	TraesCS3D01G338400	chr2D	83.792	327	36	15	1278	1591	27837049	27837371	8.480000e-76	294.0
17	TraesCS3D01G338400	chr2A	83.841	328	34	14	1278	1591	29989773	29990095	8.480000e-76	294.0
18	TraesCS3D01G338400	chr2B	82.622	328	38	14	1278	1591	44159063	44159385	3.970000e-69	272.0
19	TraesCS3D01G338400	chr2B	71.115	547	124	27	2586	3115	729060498	729059969	1.530000e-18	104.0
20	TraesCS3D01G338400	chr2B	79.592	98	12	4	3021	3115	328507589	328507497	2.600000e-06	63.9
21	TraesCS3D01G338400	chr6A	82.432	296	44	6	1818	2109	542430363	542430072	5.180000e-63	252.0
22	TraesCS3D01G338400	chr6B	81.570	293	52	2	1818	2109	592464284	592463993	1.120000e-59	241.0
23	TraesCS3D01G338400	chr6B	93.878	49	3	0	1093	1141	592464857	592464809	1.200000e-09	75.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3D01G338400	chr3D	451708823	451711949	3126	False	5775.000000	5775	100.000000	1	3127	1	chr3D.!!$F1	3126
1	TraesCS3D01G338400	chr3D	451884909	451886888	1979	False	2488.000000	2488	89.240000	523	2587	1	chr3D.!!$F2	2064
2	TraesCS3D01G338400	chr3B	593162582	593165670	3088	False	4074.000000	4074	90.596000	1	3124	1	chr3B.!!$F1	3123
3	TraesCS3D01G338400	chr3B	593540782	593542616	1834	False	2117.000000	2117	87.629000	687	2584	1	chr3B.!!$F2	1897
4	TraesCS3D01G338400	chr3A	594491173	594493814	2641	False	3764.000000	3764	92.801000	1	2587	1	chr3A.!!$F3	2586
5	TraesCS3D01G338400	chr1A	491154590	491155116	526	False	536.000000	536	85.234000	2587	3113	1	chr1A.!!$F1	526
6	TraesCS3D01G338400	chr1A	495192019	495193128	1109	True	284.333333	375	87.878667	1041	2127	3	chr1A.!!$R1	1086
7	TraesCS3D01G338400	chr1B	533323705	533324652	947	True	353.000000	375	86.910500	1278	2127	2	chr1B.!!$R1	849
8	TraesCS3D01G338400	chr1D	397972980	397973932	952	True	348.500000	370	86.640500	1278	2127	2	chr1D.!!$R1	849

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
147	156	0.037160	TGGAAAGGGGAAAGGCGTAC	59.963	55.0	0.0	0.0	0.00	3.67	F
1689	1889	0.169009	GATTTGGTGCAGAGTTCGGC	59.831	55.0	0.0	0.0	37.57	5.54	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1798	2022	0.315869	CACACAGTCGGCGAAACAAC	60.316	55.0	12.92	0.0	0.0	3.32	R
2788	3119	0.320697	AGTTGTCTTCGTAGGTGGCC	59.679	55.0	0.00	0.0	0.0	5.36	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
146	155	0.772384	TTGGAAAGGGGAAAGGCGTA	59.228	50.000	0.00	0.00	0.00	4.42
147	156	0.037160	TGGAAAGGGGAAAGGCGTAC	59.963	55.000	0.00	0.00	0.00	3.67
148	157	1.022982	GGAAAGGGGAAAGGCGTACG	61.023	60.000	11.84	11.84	0.00	3.67
149	158	0.321034	GAAAGGGGAAAGGCGTACGT	60.321	55.000	17.90	0.00	0.00	3.57
170	179	1.649664	CAGAGGAGGAACATGCTTCG	58.350	55.000	0.00	0.00	0.00	3.79
200	209	1.647545	CGATTGGTTGTCATGCGCCT	61.648	55.000	4.18	0.00	0.00	5.52
444	459	3.118000	TCATCAGCAGCATCTTGATCCTT	60.118	43.478	0.00	0.00	0.00	3.36
485	500	1.920574	CGATCAGGTTCACACGATCAC	59.079	52.381	0.00	0.00	35.11	3.06
486	501	2.671070	CGATCAGGTTCACACGATCACA	60.671	50.000	0.00	0.00	35.11	3.58
487	502	2.148916	TCAGGTTCACACGATCACAC	57.851	50.000	0.00	0.00	0.00	3.82
488	503	1.148310	CAGGTTCACACGATCACACC	58.852	55.000	0.00	0.00	0.00	4.16
489	504	0.756294	AGGTTCACACGATCACACCA	59.244	50.000	0.00	0.00	0.00	4.17
544	559	7.609146	TGTATCAATCAAGAGGATCCATATTGC	59.391	37.037	15.82	4.66	34.28	3.56
580	595	0.734889	GGCGAAATCCATGGACTGTG	59.265	55.000	18.99	9.05	0.00	3.66
664	687	2.237751	GCTGTCTCGTTGTGTGCGT	61.238	57.895	0.00	0.00	0.00	5.24
670	693	2.657296	CGTTGTGTGCGTCGTCCT	60.657	61.111	0.00	0.00	0.00	3.85
922	958	1.033746	AGCCAAGCAACCATCCATCG	61.034	55.000	0.00	0.00	0.00	3.84
923	959	2.008268	GCCAAGCAACCATCCATCGG	62.008	60.000	0.00	0.00	0.00	4.18
924	960	1.434696	CAAGCAACCATCCATCGGC	59.565	57.895	0.00	0.00	0.00	5.54
925	961	1.001020	AAGCAACCATCCATCGGCA	60.001	52.632	0.00	0.00	0.00	5.69
926	962	0.611618	AAGCAACCATCCATCGGCAA	60.612	50.000	0.00	0.00	0.00	4.52
954	996	2.805353	CAAGTCGGTCGGTCGCTG	60.805	66.667	0.00	0.00	0.00	5.18
1033	1081	1.519013	GCTCTGCTCCTGCTCTTCG	60.519	63.158	0.00	0.00	40.48	3.79
1180	1234	4.563184	GGAGTATTACACTGTTGAAGCGAG	59.437	45.833	0.00	0.00	37.72	5.03
1181	1235	5.386958	AGTATTACACTGTTGAAGCGAGA	57.613	39.130	0.00	0.00	35.62	4.04
1201	1265	3.261137	AGAGAAAAGCACCACCTACCTAC	59.739	47.826	0.00	0.00	0.00	3.18
1206	1272	1.360162	AGCACCACCTACCTACCTGTA	59.640	52.381	0.00	0.00	0.00	2.74
1208	1274	3.205959	AGCACCACCTACCTACCTGTATA	59.794	47.826	0.00	0.00	0.00	1.47
1209	1275	3.573110	GCACCACCTACCTACCTGTATAG	59.427	52.174	0.00	0.00	0.00	1.31
1227	1293	2.348411	AGGCTGTATTGTATGTGGGC	57.652	50.000	0.00	0.00	0.00	5.36
1230	1296	0.944386	CTGTATTGTATGTGGGCGGC	59.056	55.000	0.00	0.00	0.00	6.53
1250	1320	2.033550	GCTCCCGACATGAGTGTAGTAG	59.966	54.545	0.00	0.00	39.09	2.57
1493	1572	4.351938	CTGCCCAACGACGACGGA	62.352	66.667	12.58	0.00	44.46	4.69
1689	1889	0.169009	GATTTGGTGCAGAGTTCGGC	59.831	55.000	0.00	0.00	37.57	5.54
1798	2022	6.373495	TGATCCAATCACTGAACTGAAGATTG	59.627	38.462	0.00	0.00	43.04	2.67
1799	2023	5.624159	TCCAATCACTGAACTGAAGATTGT	58.376	37.500	11.17	0.00	42.29	2.71
2140	2440	1.642037	TTCTAGCGAGGTCGACCGTG	61.642	60.000	28.26	24.05	43.02	4.94
2143	2443	4.773117	GCGAGGTCGACCGTGGAC	62.773	72.222	28.26	16.49	43.02	4.02
2211	2517	9.428097	GAAGGAAACCTCTTCGTTATAGTAAAA	57.572	33.333	0.00	0.00	32.52	1.52
2242	2548	1.147153	GGCTATTCCGAGGCTGCTT	59.853	57.895	0.00	0.00	38.91	3.91
2418	2729	3.947196	TGCTTTAGAAGTACATGCATGGG	59.053	43.478	29.41	7.08	0.00	4.00
2465	2776	6.170506	AGTGTCTTGTAACTTCTGTTGTTGA	58.829	36.000	0.00	0.00	37.59	3.18
2510	2822	3.156293	CATGGTTGGGAGATGTTTGTGA	58.844	45.455	0.00	0.00	0.00	3.58
2511	2823	3.524095	TGGTTGGGAGATGTTTGTGAT	57.476	42.857	0.00	0.00	0.00	3.06
2512	2824	3.843422	TGGTTGGGAGATGTTTGTGATT	58.157	40.909	0.00	0.00	0.00	2.57
2513	2825	3.573538	TGGTTGGGAGATGTTTGTGATTG	59.426	43.478	0.00	0.00	0.00	2.67
2514	2826	3.573967	GGTTGGGAGATGTTTGTGATTGT	59.426	43.478	0.00	0.00	0.00	2.71
2575	2895	8.505625	TGCTACTTTATGGTTTAACCGTTTTAG	58.494	33.333	14.53	11.21	42.58	1.85
2587	2907	9.692749	GTTTAACCGTTTTAGGTAGTACTACTT	57.307	33.333	27.71	23.97	45.21	2.24
2711	3042	2.628657	ACCAAGCTAGTTCGAAGACAGT	59.371	45.455	0.00	0.00	34.32	3.55
2717	3048	4.400884	AGCTAGTTCGAAGACAGTCATCAT	59.599	41.667	0.00	0.00	34.32	2.45
2724	3055	6.456795	TCGAAGACAGTCATCATAGACAAT	57.543	37.500	2.66	0.00	40.98	2.71
2771	3102	1.134753	CAAAGCTGAGCAACAACACCA	59.865	47.619	7.39	0.00	0.00	4.17
2773	3104	0.394216	AGCTGAGCAACAACACCACA	60.394	50.000	7.39	0.00	0.00	4.17
2776	3107	1.948834	CTGAGCAACAACACCACATCA	59.051	47.619	0.00	0.00	0.00	3.07
2780	3111	1.596954	GCAACAACACCACATCACGAC	60.597	52.381	0.00	0.00	0.00	4.34
2781	3112	1.668237	CAACAACACCACATCACGACA	59.332	47.619	0.00	0.00	0.00	4.35
2782	3113	1.581934	ACAACACCACATCACGACAG	58.418	50.000	0.00	0.00	0.00	3.51
2783	3114	1.138069	ACAACACCACATCACGACAGA	59.862	47.619	0.00	0.00	0.00	3.41
2784	3115	1.526887	CAACACCACATCACGACAGAC	59.473	52.381	0.00	0.00	0.00	3.51
2786	3117	1.372997	ACCACATCACGACAGACGC	60.373	57.895	0.00	0.00	46.94	5.19
2787	3118	2.094659	CCACATCACGACAGACGCC	61.095	63.158	0.00	0.00	46.94	5.68
2788	3119	2.126463	ACATCACGACAGACGCCG	60.126	61.111	0.00	0.00	46.94	6.46
2789	3120	2.880879	CATCACGACAGACGCCGG	60.881	66.667	0.00	0.00	46.94	6.13
2790	3121	4.796231	ATCACGACAGACGCCGGC	62.796	66.667	19.07	19.07	46.94	6.13
2809	3140	2.067013	GCCACCTACGAAGACAACTTC	58.933	52.381	0.00	0.00	46.21	3.01
2855	3194	1.768275	ACGCATCATCCACCCTTGATA	59.232	47.619	0.00	0.00	31.50	2.15
2859	3198	3.327757	GCATCATCCACCCTTGATACCTA	59.672	47.826	0.00	0.00	31.50	3.08
2909	3248	0.109723	TGGACGGTCCCAAGAAAAGG	59.890	55.000	23.81	0.00	35.03	3.11
2921	3260	3.412386	CAAGAAAAGGACCGTCTTGGAT	58.588	45.455	19.88	0.00	42.91	3.41
2926	3265	1.645710	AGGACCGTCTTGGATTCACT	58.354	50.000	0.00	0.00	42.00	3.41
2985	3324	2.981909	AACGACGAGCACCGGAGA	60.982	61.111	9.46	0.00	43.93	3.71
2989	3328	3.282745	GACGAGCACCGGAGAAGCA	62.283	63.158	9.46	0.00	43.93	3.91
3019	3360	3.246416	ACCTCAGGTAGTGTCTCAACT	57.754	47.619	0.00	0.00	32.11	3.16
3031	3372	2.079925	GTCTCAACTTGATGCTCCCAC	58.920	52.381	0.00	0.00	0.00	4.61
3077	3419	0.179048	CATGCGCCAATCCTACTCCA	60.179	55.000	4.18	0.00	0.00	3.86
3124	3466	1.746615	CCAACCCCATGTGAGAGCG	60.747	63.158	0.00	0.00	0.00	5.03
3125	3467	1.296392	CAACCCCATGTGAGAGCGA	59.704	57.895	0.00	0.00	0.00	4.93
3126	3468	0.742281	CAACCCCATGTGAGAGCGAG	60.742	60.000	0.00	0.00	0.00	5.03

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
4	5	2.512515	GATCTGCCTGTCGGGTGC	60.513	66.667	0.00	0.00	37.43	5.01
118	123	3.361977	CCTTTCCAACGGTGGCGG	61.362	66.667	16.88	11.40	45.54	6.13
146	155	0.898320	CATGTTCCTCCTCTGGACGT	59.102	55.000	0.00	0.00	35.58	4.34
147	156	0.460987	GCATGTTCCTCCTCTGGACG	60.461	60.000	0.00	0.00	35.58	4.79
148	157	0.908198	AGCATGTTCCTCCTCTGGAC	59.092	55.000	0.00	0.00	35.58	4.02
149	158	1.556911	GAAGCATGTTCCTCCTCTGGA	59.443	52.381	0.00	0.00	0.00	3.86
170	179	0.321653	AACCAATCGTCCCAGAGTGC	60.322	55.000	0.00	0.00	35.18	4.40
200	209	7.067496	AGATTAATATGAGGAGCGGAAAGAA	57.933	36.000	0.00	0.00	0.00	2.52
444	459	4.159506	TCGGCATATATCACGATCCAATCA	59.840	41.667	4.60	0.00	0.00	2.57
544	559	1.537202	CGCCACTGGGAAGAAGAAAAG	59.463	52.381	0.00	0.00	35.59	2.27
922	958	0.538287	ACTTGCTGAGGAACCTTGCC	60.538	55.000	13.77	0.00	0.00	4.52
923	959	0.877743	GACTTGCTGAGGAACCTTGC	59.122	55.000	10.95	10.95	0.00	4.01
924	960	1.151668	CGACTTGCTGAGGAACCTTG	58.848	55.000	0.00	0.00	0.00	3.61
925	961	0.035458	CCGACTTGCTGAGGAACCTT	59.965	55.000	0.00	0.00	0.00	3.50
926	962	1.122019	ACCGACTTGCTGAGGAACCT	61.122	55.000	0.00	0.00	0.00	3.50
954	996	1.360820	GTGCCTTTCTAGCTCGGTTC	58.639	55.000	0.00	0.00	0.00	3.62
1147	1198	6.868622	ACAGTGTAATACTCCTGATGAAGAC	58.131	40.000	14.41	0.00	37.60	3.01
1180	1234	2.861147	AGGTAGGTGGTGCTTTTCTC	57.139	50.000	0.00	0.00	0.00	2.87
1181	1235	2.305052	GGTAGGTAGGTGGTGCTTTTCT	59.695	50.000	0.00	0.00	0.00	2.52
1201	1265	6.166279	CCACATACAATACAGCCTATACAGG	58.834	44.000	0.00	0.00	45.77	4.00
1206	1272	3.557054	CGCCCACATACAATACAGCCTAT	60.557	47.826	0.00	0.00	0.00	2.57
1208	1274	1.475034	CGCCCACATACAATACAGCCT	60.475	52.381	0.00	0.00	0.00	4.58
1209	1275	0.944386	CGCCCACATACAATACAGCC	59.056	55.000	0.00	0.00	0.00	4.85
1210	1276	0.944386	CCGCCCACATACAATACAGC	59.056	55.000	0.00	0.00	0.00	4.40
1230	1296	3.542648	TCTACTACACTCATGTCGGGAG	58.457	50.000	0.00	0.00	40.48	4.30
1250	1320	5.474189	AGGACACTTCAGTAGTTAGACACTC	59.526	44.000	0.00	0.00	36.88	3.51
1603	1682	6.374613	GGGACCAGATTAAGGAAGTTTGTAAG	59.625	42.308	0.00	0.00	0.00	2.34
1680	1880	2.659610	GCTGTCAGGCCGAACTCT	59.340	61.111	11.22	0.00	0.00	3.24
1681	1881	2.811317	CGCTGTCAGGCCGAACTC	60.811	66.667	11.22	3.61	0.00	3.01
1689	1889	2.336478	ACCGAGAGTCGCTGTCAGG	61.336	63.158	1.14	8.25	38.82	3.86
1798	2022	0.315869	CACACAGTCGGCGAAACAAC	60.316	55.000	12.92	0.00	0.00	3.32
1799	2023	0.741574	ACACACAGTCGGCGAAACAA	60.742	50.000	12.92	0.00	0.00	2.83
2140	2440	2.750888	GCAAGCAATCCGTCCGTCC	61.751	63.158	0.00	0.00	0.00	4.79
2143	2443	0.523968	CAATGCAAGCAATCCGTCCG	60.524	55.000	0.00	0.00	0.00	4.79
2388	2697	6.403309	GCATGTACTTCTAAAGCACCCTTAAC	60.403	42.308	0.00	0.00	0.00	2.01
2418	2729	6.017109	ACTCTCACACATGAATACAAAACACC	60.017	38.462	0.00	0.00	33.30	4.16
2465	2776	2.821625	GCAGGATTTGGGGGTTACAACT	60.822	50.000	0.00	0.00	0.00	3.16
2513	2825	4.021807	CCCAAAATAACAAGTGTACCCCAC	60.022	45.833	0.00	0.00	44.89	4.61
2514	2826	4.153411	CCCAAAATAACAAGTGTACCCCA	58.847	43.478	0.00	0.00	0.00	4.96
2643	2970	7.699566	TGTTCGCAACAAGTTATAGTTCTTTT	58.300	30.769	0.09	0.00	38.72	2.27
2645	2972	6.854496	TGTTCGCAACAAGTTATAGTTCTT	57.146	33.333	0.09	0.00	38.72	2.52
2724	3055	5.876357	AGGCACTTCTCCTTTGTATTTGTA	58.124	37.500	0.00	0.00	27.25	2.41
2771	3102	2.126463	CGGCGTCTGTCGTGATGT	60.126	61.111	0.00	0.00	38.71	3.06
2773	3104	4.796231	GCCGGCGTCTGTCGTGAT	62.796	66.667	12.58	0.00	43.03	3.06
2780	3111	4.814294	GTAGGTGGCCGGCGTCTG	62.814	72.222	22.54	0.00	0.00	3.51
2785	3116	3.766691	TCTTCGTAGGTGGCCGGC	61.767	66.667	21.18	21.18	0.00	6.13
2786	3117	2.162338	TTGTCTTCGTAGGTGGCCGG	62.162	60.000	0.00	0.00	0.00	6.13
2787	3118	1.012486	GTTGTCTTCGTAGGTGGCCG	61.012	60.000	0.00	0.00	0.00	6.13
2788	3119	0.320697	AGTTGTCTTCGTAGGTGGCC	59.679	55.000	0.00	0.00	0.00	5.36
2789	3120	2.067013	GAAGTTGTCTTCGTAGGTGGC	58.933	52.381	0.00	0.00	40.24	5.01
2809	3140	3.363970	CGAGGGACGTTCAATTGAAGTTG	60.364	47.826	21.05	15.47	34.27	3.16
2859	3198	3.876309	TCTACTTGCCACCTCCTTTTT	57.124	42.857	0.00	0.00	0.00	1.94
2909	3248	1.726853	CCAGTGAATCCAAGACGGTC	58.273	55.000	0.00	0.00	35.57	4.79
2912	3251	0.389817	TCGCCAGTGAATCCAAGACG	60.390	55.000	0.00	0.00	0.00	4.18
2921	3260	1.081906	GTACGTCGTCGCCAGTGAA	60.082	57.895	0.00	0.00	41.18	3.18
2926	3265	2.089936	GCAATGTACGTCGTCGCCA	61.090	57.895	0.00	0.00	41.18	5.69
2985	3324	2.026822	CCTGAGGTTCTATGTGGTGCTT	60.027	50.000	0.00	0.00	0.00	3.91
2989	3328	3.769844	CACTACCTGAGGTTCTATGTGGT	59.230	47.826	10.53	0.00	37.09	4.16
3031	3372	1.409064	TCTTCGATGTCATTCCTCCGG	59.591	52.381	0.00	0.00	0.00	5.14
3040	3381	2.506217	GCGGCGTCTTCGATGTCA	60.506	61.111	9.37	0.00	39.71	3.58
3044	3385	2.586079	CATGGCGGCGTCTTCGAT	60.586	61.111	14.51	0.00	39.71	3.59
3071	3413	2.500229	CGAAAGCCTTGGTTTGGAGTA	58.500	47.619	0.00	0.00	33.25	2.59
3094	3436	1.061546	GGGGTTGGTAGTTGTCTCCA	58.938	55.000	0.00	0.00	0.00	3.86

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.