Multiple sequence alignment - TraesCS3D01G337100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G337100 chr3D 100.000 6839 0 0 1 6839 448863412 448870250 0.000000e+00 12630.0
1 TraesCS3D01G337100 chr3D 82.117 274 31 10 6066 6328 468949519 468949253 1.150000e-52 219.0
2 TraesCS3D01G337100 chr3D 87.582 153 16 1 5083 5232 441388819 441388667 2.540000e-39 174.0
3 TraesCS3D01G337100 chr3B 91.557 3790 239 42 327 4075 589542408 589546157 0.000000e+00 5151.0
4 TraesCS3D01G337100 chr3B 92.387 2049 97 15 4130 6138 589548256 589550285 0.000000e+00 2865.0
5 TraesCS3D01G337100 chr3B 92.160 625 37 10 6222 6839 589550634 589551253 0.000000e+00 872.0
6 TraesCS3D01G337100 chr3B 91.797 256 18 1 86 338 589542137 589542392 3.030000e-93 353.0
7 TraesCS3D01G337100 chr3A 92.113 2612 121 34 4241 6838 590233962 590236502 0.000000e+00 3603.0
8 TraesCS3D01G337100 chr3A 91.155 1956 102 28 1607 3541 590231127 590233032 0.000000e+00 2588.0
9 TraesCS3D01G337100 chr3A 91.454 1451 86 18 100 1546 590229688 590231104 0.000000e+00 1958.0
10 TraesCS3D01G337100 chr3A 88.645 502 48 6 3582 4075 590233029 590233529 2.730000e-168 603.0
11 TraesCS3D01G337100 chr3A 88.235 153 14 2 5083 5232 383690933 383691084 5.450000e-41 180.0
12 TraesCS3D01G337100 chr3A 86.875 160 17 2 5079 5235 498230090 498229932 7.050000e-40 176.0
13 TraesCS3D01G337100 chr3A 91.000 100 7 2 4098 4196 590233855 590233953 4.300000e-27 134.0
14 TraesCS3D01G337100 chr3A 95.238 63 2 1 11 73 590229631 590229692 1.570000e-16 99.0
15 TraesCS3D01G337100 chr1D 85.284 299 34 5 6066 6357 463531181 463531476 4.010000e-77 300.0
16 TraesCS3D01G337100 chr1D 97.436 39 1 0 6066 6104 421451 421489 4.430000e-07 67.6
17 TraesCS3D01G337100 chr5D 84.615 299 36 5 6066 6357 322189731 322189436 8.680000e-74 289.0
18 TraesCS3D01G337100 chr2B 84.000 300 36 7 6066 6357 73994966 73994671 1.880000e-70 278.0
19 TraesCS3D01G337100 chr2D 88.125 160 16 1 5078 5234 79056324 79056165 3.260000e-43 187.0
20 TraesCS3D01G337100 chr2A 88.199 161 14 3 5078 5234 79316162 79316003 3.260000e-43 187.0
21 TraesCS3D01G337100 chr6A 87.273 165 15 3 5073 5232 17378076 17377913 4.210000e-42 183.0
22 TraesCS3D01G337100 chr6A 86.792 159 17 4 5078 5233 65858079 65858236 2.540000e-39 174.0
23 TraesCS3D01G337100 chr6D 86.792 159 17 4 5078 5233 48676053 48675896 2.540000e-39 174.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G337100 chr3D 448863412 448870250 6838 False 12630.00 12630 100.000000 1 6839 1 chr3D.!!$F1 6838
1 TraesCS3D01G337100 chr3B 589542137 589551253 9116 False 2310.25 5151 91.975250 86 6839 4 chr3B.!!$F1 6753
2 TraesCS3D01G337100 chr3A 590229631 590236502 6871 False 1497.50 3603 91.600833 11 6838 6 chr3A.!!$F2 6827

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
147 148 0.249398 AGCCACCGTCAGTATTCACC 59.751 55.0 0.00 0.0 0.00 4.02 F
960 995 1.086634 CCCTTCTTGCGAGCTGCTAC 61.087 60.0 0.15 0.0 46.63 3.58 F
2501 2582 0.819666 GCCACAAGCATACCCTAGCC 60.820 60.0 0.00 0.0 42.97 3.93 F
2502 2583 0.839946 CCACAAGCATACCCTAGCCT 59.160 55.0 0.00 0.0 0.00 4.58 F
3546 3644 0.798776 CCGAGCCATTGTGTCTTCAC 59.201 55.0 0.00 0.0 44.08 3.18 F
3858 4007 0.036388 TGAAAGCGGATCCTGTGGAC 60.036 55.0 10.75 0.0 32.98 4.02 F
5070 7313 0.107017 GCAGATAGGCCCTTGCTTCA 60.107 55.0 0.00 0.0 37.74 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1177 1212 1.494721 AGGGCAAACAGGAGAAGTTGA 59.505 47.619 0.00 0.0 0.00 3.18 R
2754 2848 0.108585 ACCCCGCTAACTATGCCATG 59.891 55.000 0.00 0.0 0.00 3.66 R
3493 3591 0.035915 GTTGGGAGCCTCAAGAGTCC 60.036 60.000 0.00 0.0 0.00 3.85 R
3554 3652 0.744414 TTCATCTAGCGGTGCCAAGC 60.744 55.000 0.00 0.0 0.00 4.01 R
4946 7185 0.107703 CCTCGGTTTAGCTGATGCCA 60.108 55.000 0.00 0.0 40.80 4.92 R
5485 7731 1.009389 GTGGAGTCGAACCGCAGAAG 61.009 60.000 15.54 0.0 37.78 2.85 R
6035 8281 1.031571 TTGACCATGGCTCCGCATTC 61.032 55.000 13.04 0.0 0.00 2.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 6.719370 AGAACAATTAATGGTGCAAAGTCCTA 59.281 34.615 3.66 0.00 0.00 2.94
68 69 6.909550 ACAATTAATGGTGCAAAGTCCTAA 57.090 33.333 0.00 0.00 0.00 2.69
69 70 7.296628 ACAATTAATGGTGCAAAGTCCTAAA 57.703 32.000 0.00 0.00 0.00 1.85
70 71 7.378181 ACAATTAATGGTGCAAAGTCCTAAAG 58.622 34.615 0.00 0.00 0.00 1.85
71 72 5.975693 TTAATGGTGCAAAGTCCTAAAGG 57.024 39.130 0.00 0.00 0.00 3.11
72 73 3.806949 ATGGTGCAAAGTCCTAAAGGA 57.193 42.857 0.00 0.00 43.08 3.36
147 148 0.249398 AGCCACCGTCAGTATTCACC 59.751 55.000 0.00 0.00 0.00 4.02
195 196 2.728839 GACAGTCAGTCAGAAAAGAGCG 59.271 50.000 0.00 0.00 46.77 5.03
204 205 3.427193 GTCAGAAAAGAGCGAGTGAAGAC 59.573 47.826 0.00 0.00 0.00 3.01
236 237 2.032528 CTCTGCTGGCCCGTTTCA 59.967 61.111 0.00 0.00 0.00 2.69
282 286 5.870433 GCATCAGATTAGATCAGGTCAGATG 59.130 44.000 15.73 15.73 34.01 2.90
367 399 4.939368 TGCACCGAAACGTGGGGG 62.939 66.667 0.00 0.00 34.16 5.40
373 405 2.203437 GAAACGTGGGGGTGGCTT 60.203 61.111 0.00 0.00 0.00 4.35
586 618 6.109359 GGAACAGAGCACAATCATAGTACTT 58.891 40.000 0.00 0.00 0.00 2.24
628 661 7.448748 AAAAGAAACGCTATTTATCACAGGT 57.551 32.000 0.00 0.00 0.00 4.00
939 974 1.864711 CGTTTCCCACATATACCTGCG 59.135 52.381 0.00 0.00 0.00 5.18
942 977 1.302511 CCCACATATACCTGCGGCC 60.303 63.158 0.00 0.00 0.00 6.13
960 995 1.086634 CCCTTCTTGCGAGCTGCTAC 61.087 60.000 0.15 0.00 46.63 3.58
1068 1103 4.802051 GCGCAGGAAGCCATGGGA 62.802 66.667 15.13 0.00 41.38 4.37
1074 1109 1.530183 GGAAGCCATGGGATCTGCC 60.530 63.158 15.13 6.49 0.00 4.85
1085 1120 3.781770 GATCTGCCTCCGCGTCCTG 62.782 68.421 4.92 0.00 38.08 3.86
1159 1194 5.219652 CGACAGCCGAAAGAGAAGGTACT 62.220 52.174 0.00 0.00 40.79 2.73
1169 1204 6.294286 CGAAAGAGAAGGTACTGAAACTCTCT 60.294 42.308 0.00 0.00 40.86 3.10
1170 1205 6.584185 AAGAGAAGGTACTGAAACTCTCTC 57.416 41.667 0.00 0.00 40.86 3.20
1171 1206 5.887754 AGAGAAGGTACTGAAACTCTCTCT 58.112 41.667 0.00 0.00 40.86 3.10
1172 1207 7.023171 AGAGAAGGTACTGAAACTCTCTCTA 57.977 40.000 0.00 0.00 40.86 2.43
1173 1208 7.639378 AGAGAAGGTACTGAAACTCTCTCTAT 58.361 38.462 0.00 0.00 40.86 1.98
1174 1209 8.774183 AGAGAAGGTACTGAAACTCTCTCTATA 58.226 37.037 0.00 0.00 40.86 1.31
1175 1210 8.974060 AGAAGGTACTGAAACTCTCTCTATAG 57.026 38.462 0.00 0.00 40.86 1.31
1176 1211 8.554011 AGAAGGTACTGAAACTCTCTCTATAGT 58.446 37.037 0.00 0.00 40.86 2.12
1177 1212 9.181061 GAAGGTACTGAAACTCTCTCTATAGTT 57.819 37.037 0.00 0.00 40.86 2.24
1178 1213 8.741603 AGGTACTGAAACTCTCTCTATAGTTC 57.258 38.462 0.00 0.00 37.18 3.01
1179 1214 8.330247 AGGTACTGAAACTCTCTCTATAGTTCA 58.670 37.037 0.00 0.11 37.18 3.18
1180 1215 8.958506 GGTACTGAAACTCTCTCTATAGTTCAA 58.041 37.037 0.00 0.00 34.91 2.69
1181 1216 9.777575 GTACTGAAACTCTCTCTATAGTTCAAC 57.222 37.037 0.00 0.00 34.91 3.18
1182 1217 8.644374 ACTGAAACTCTCTCTATAGTTCAACT 57.356 34.615 0.00 0.00 34.91 3.16
1183 1218 9.084533 ACTGAAACTCTCTCTATAGTTCAACTT 57.915 33.333 0.00 0.00 34.91 2.66
1184 1219 9.567848 CTGAAACTCTCTCTATAGTTCAACTTC 57.432 37.037 0.00 0.00 34.91 3.01
1185 1220 9.303116 TGAAACTCTCTCTATAGTTCAACTTCT 57.697 33.333 0.00 0.00 34.91 2.85
1186 1221 9.783256 GAAACTCTCTCTATAGTTCAACTTCTC 57.217 37.037 0.00 0.00 34.91 2.87
1187 1222 7.875327 ACTCTCTCTATAGTTCAACTTCTCC 57.125 40.000 0.00 0.00 0.00 3.71
1188 1223 7.639378 ACTCTCTCTATAGTTCAACTTCTCCT 58.361 38.462 0.00 0.00 0.00 3.69
1189 1224 7.556275 ACTCTCTCTATAGTTCAACTTCTCCTG 59.444 40.741 0.00 0.00 0.00 3.86
1190 1225 7.406916 TCTCTCTATAGTTCAACTTCTCCTGT 58.593 38.462 0.00 0.00 0.00 4.00
1191 1226 7.891183 TCTCTCTATAGTTCAACTTCTCCTGTT 59.109 37.037 0.00 0.00 0.00 3.16
1192 1227 8.423906 TCTCTATAGTTCAACTTCTCCTGTTT 57.576 34.615 0.00 0.00 0.00 2.83
1193 1228 8.307483 TCTCTATAGTTCAACTTCTCCTGTTTG 58.693 37.037 0.00 0.00 0.00 2.93
1194 1229 5.948992 ATAGTTCAACTTCTCCTGTTTGC 57.051 39.130 0.00 0.00 0.00 3.68
1195 1230 2.952310 AGTTCAACTTCTCCTGTTTGCC 59.048 45.455 0.00 0.00 0.00 4.52
1196 1231 1.981256 TCAACTTCTCCTGTTTGCCC 58.019 50.000 0.00 0.00 0.00 5.36
1197 1232 1.494721 TCAACTTCTCCTGTTTGCCCT 59.505 47.619 0.00 0.00 0.00 5.19
1198 1233 2.091885 TCAACTTCTCCTGTTTGCCCTT 60.092 45.455 0.00 0.00 0.00 3.95
1199 1234 2.278332 ACTTCTCCTGTTTGCCCTTC 57.722 50.000 0.00 0.00 0.00 3.46
1200 1235 1.777272 ACTTCTCCTGTTTGCCCTTCT 59.223 47.619 0.00 0.00 0.00 2.85
1201 1236 2.175715 ACTTCTCCTGTTTGCCCTTCTT 59.824 45.455 0.00 0.00 0.00 2.52
1209 1274 3.399330 TGTTTGCCCTTCTTAGAGTTCG 58.601 45.455 0.00 0.00 0.00 3.95
1232 1297 3.276857 TCTGAAGCAGATCCTGAAATGC 58.723 45.455 0.00 0.00 35.39 3.56
1260 1325 3.380954 TGATTTGCACTCTTTGTCTTGCA 59.619 39.130 0.00 0.00 43.11 4.08
1262 1327 1.024271 TGCACTCTTTGTCTTGCACC 58.976 50.000 0.00 0.00 40.01 5.01
1343 1409 1.053424 TACTGTGCCTTCCTCGGTTT 58.947 50.000 0.00 0.00 0.00 3.27
1355 1421 5.301805 CCTTCCTCGGTTTTATGCCAATATT 59.698 40.000 0.00 0.00 0.00 1.28
1433 1499 5.939764 ACAGATGGCACTAGACAAATAGA 57.060 39.130 0.00 0.00 35.50 1.98
1442 1508 6.205784 GCACTAGACAAATAGACTCTAGCTG 58.794 44.000 0.00 0.00 37.93 4.24
1453 1519 4.100373 AGACTCTAGCTGGAACTGGAATT 58.900 43.478 0.00 0.00 0.00 2.17
1456 1522 6.213600 AGACTCTAGCTGGAACTGGAATTTTA 59.786 38.462 0.00 0.00 0.00 1.52
1503 1570 5.560966 AGTTGGATTAATGGTTTACTGCG 57.439 39.130 0.00 0.00 0.00 5.18
1504 1571 5.250200 AGTTGGATTAATGGTTTACTGCGA 58.750 37.500 0.00 0.00 0.00 5.10
1511 1578 8.403236 GGATTAATGGTTTACTGCGAGTTAATT 58.597 33.333 0.00 0.00 0.00 1.40
1516 1584 7.124347 TGGTTTACTGCGAGTTAATTAAGTG 57.876 36.000 10.30 4.62 0.00 3.16
1523 1591 5.833082 TGCGAGTTAATTAAGTGCCAAAAA 58.167 33.333 10.30 0.00 0.00 1.94
1524 1592 6.451393 TGCGAGTTAATTAAGTGCCAAAAAT 58.549 32.000 10.30 0.00 0.00 1.82
1529 1597 9.908152 GAGTTAATTAAGTGCCAAAAATACTGT 57.092 29.630 10.30 0.00 0.00 3.55
1530 1598 9.908152 AGTTAATTAAGTGCCAAAAATACTGTC 57.092 29.630 4.71 0.00 0.00 3.51
1531 1599 9.685828 GTTAATTAAGTGCCAAAAATACTGTCA 57.314 29.630 0.00 0.00 0.00 3.58
1554 1622 2.114331 GAGAGTGATAGCGCCGCGTA 62.114 60.000 15.34 6.11 0.00 4.42
1560 1628 1.069378 GATAGCGCCGCGTATGGTAC 61.069 60.000 15.34 0.00 0.00 3.34
1586 1654 5.239525 GCCTTGACTAGAACAACATTCAACT 59.760 40.000 0.00 0.00 0.00 3.16
1587 1655 6.662616 CCTTGACTAGAACAACATTCAACTG 58.337 40.000 0.00 0.00 0.00 3.16
1590 1658 5.991606 TGACTAGAACAACATTCAACTGGAG 59.008 40.000 0.00 0.00 0.00 3.86
1604 1672 5.338632 TCAACTGGAGGGTGAATAGTTCTA 58.661 41.667 0.00 0.00 38.91 2.10
1617 1685 7.974501 GGTGAATAGTTCTATTTCTGAGTCGAA 59.025 37.037 6.54 0.00 0.00 3.71
1683 1751 6.959639 TTATGGTAGCCATTTCTGGAAATC 57.040 37.500 5.94 0.00 42.23 2.17
1733 1803 5.295431 TCCTTTGCTTTTGTACATCATCG 57.705 39.130 0.00 0.00 0.00 3.84
1737 1807 7.120579 TCCTTTGCTTTTGTACATCATCGTATT 59.879 33.333 0.00 0.00 0.00 1.89
1830 1905 7.779326 TCTCCATATTCTCCAAAAATATGCACA 59.221 33.333 9.35 0.00 42.11 4.57
1831 1906 8.481492 TCCATATTCTCCAAAAATATGCACAT 57.519 30.769 9.35 0.00 42.11 3.21
1832 1907 9.585369 TCCATATTCTCCAAAAATATGCACATA 57.415 29.630 9.35 0.00 42.11 2.29
1902 1977 4.816925 CCGAAGTCATATTTCCTTCCCTTC 59.183 45.833 0.00 0.00 32.77 3.46
1912 1987 2.711542 TCCTTCCCTTCGATTTGCTTC 58.288 47.619 0.00 0.00 0.00 3.86
1914 1989 3.019564 CCTTCCCTTCGATTTGCTTCAT 58.980 45.455 0.00 0.00 0.00 2.57
2038 2113 7.010460 TGCATATGAGAGAAAACAATGACTACG 59.990 37.037 6.97 0.00 0.00 3.51
2149 2229 4.027572 TGAACAGAAACGAAAAAGCCAG 57.972 40.909 0.00 0.00 0.00 4.85
2426 2507 3.132925 TCCTACGGTTTTCCTTTGTTCG 58.867 45.455 0.00 0.00 37.95 3.95
2428 2509 3.185797 CCTACGGTTTTCCTTTGTTCGAG 59.814 47.826 0.00 0.00 37.95 4.04
2443 2524 3.022406 GTTCGAGAGGGAGCCTTAACTA 58.978 50.000 0.00 0.00 31.76 2.24
2480 2561 5.583457 GGGGAGAAAATCATGCATTTTTCAG 59.417 40.000 26.74 6.30 43.56 3.02
2488 2569 3.321396 TCATGCATTTTTCAGAGCCACAA 59.679 39.130 0.00 0.00 0.00 3.33
2489 2570 3.374220 TGCATTTTTCAGAGCCACAAG 57.626 42.857 0.00 0.00 0.00 3.16
2490 2571 2.064014 GCATTTTTCAGAGCCACAAGC 58.936 47.619 0.00 0.00 44.25 4.01
2500 2581 2.707902 GCCACAAGCATACCCTAGC 58.292 57.895 0.00 0.00 42.97 3.42
2501 2582 0.819666 GCCACAAGCATACCCTAGCC 60.820 60.000 0.00 0.00 42.97 3.93
2502 2583 0.839946 CCACAAGCATACCCTAGCCT 59.160 55.000 0.00 0.00 0.00 4.58
2503 2584 2.047061 CCACAAGCATACCCTAGCCTA 58.953 52.381 0.00 0.00 0.00 3.93
2504 2585 2.224305 CCACAAGCATACCCTAGCCTAC 60.224 54.545 0.00 0.00 0.00 3.18
2568 2649 3.470709 TGAGGCTTCTTGTCTTGTTGAG 58.529 45.455 0.00 0.00 0.00 3.02
2579 2660 2.813754 GTCTTGTTGAGCAGCCATGTAA 59.186 45.455 0.00 0.00 0.00 2.41
2594 2675 5.539955 AGCCATGTAAGTCCAAAAAGTCAAT 59.460 36.000 0.00 0.00 0.00 2.57
2642 2723 3.258622 AGAGCATAGTAGGATTTACCGCC 59.741 47.826 0.00 0.00 44.74 6.13
2643 2724 3.240302 AGCATAGTAGGATTTACCGCCT 58.760 45.455 0.00 0.00 44.74 5.52
2681 2775 7.898014 AGTTTGAGAAGAAAAATACCAAGGT 57.102 32.000 0.00 0.00 0.00 3.50
2684 2778 9.841880 GTTTGAGAAGAAAAATACCAAGGTATC 57.158 33.333 11.93 1.34 40.08 2.24
2685 2779 7.843490 TGAGAAGAAAAATACCAAGGTATCG 57.157 36.000 11.93 0.00 40.08 2.92
2687 2781 8.265055 TGAGAAGAAAAATACCAAGGTATCGAT 58.735 33.333 11.93 2.16 40.08 3.59
2688 2782 8.438676 AGAAGAAAAATACCAAGGTATCGATG 57.561 34.615 11.93 0.00 40.08 3.84
2689 2783 8.265055 AGAAGAAAAATACCAAGGTATCGATGA 58.735 33.333 11.93 0.00 40.08 2.92
2690 2784 8.801882 AAGAAAAATACCAAGGTATCGATGAA 57.198 30.769 11.93 0.00 40.08 2.57
2691 2785 8.801882 AGAAAAATACCAAGGTATCGATGAAA 57.198 30.769 11.93 0.00 40.08 2.69
2729 2823 2.094894 CCGTGTCGTACTACACTGTAGG 59.905 54.545 23.47 15.40 46.13 3.18
2867 2961 2.121506 TGTTGGCCCCCTCTCCTT 60.122 61.111 0.00 0.00 0.00 3.36
2888 2982 1.457643 TCTAGGGACATGGAGCCGG 60.458 63.158 0.00 0.00 0.00 6.13
2894 2988 4.740822 ACATGGAGCCGGCCCAAC 62.741 66.667 31.83 18.01 37.22 3.77
2907 3001 1.366679 GCCCAACGGTCTAGTAAAGC 58.633 55.000 0.00 0.00 0.00 3.51
3004 3098 6.426327 TCAGTTACACAACAACATCATTTCG 58.574 36.000 0.00 0.00 37.10 3.46
3024 3118 7.989416 TTTCGGTAACATCATTTAGAAACCT 57.011 32.000 0.00 0.00 0.00 3.50
3122 3216 9.967451 TCCATTTTCTACTATGAACCATTAACA 57.033 29.630 0.00 0.00 0.00 2.41
3132 3226 9.823647 ACTATGAACCATTAACATCTCAAGTAG 57.176 33.333 0.00 0.00 0.00 2.57
3133 3227 6.985188 TGAACCATTAACATCTCAAGTAGC 57.015 37.500 0.00 0.00 0.00 3.58
3134 3228 6.472016 TGAACCATTAACATCTCAAGTAGCA 58.528 36.000 0.00 0.00 0.00 3.49
3135 3229 7.112122 TGAACCATTAACATCTCAAGTAGCAT 58.888 34.615 0.00 0.00 0.00 3.79
3265 3359 9.474920 CAACATATTACAAAACTTGACAACCAT 57.525 29.630 0.00 0.00 0.00 3.55
3302 3396 4.247781 CCATGATGGACCAGTGGC 57.752 61.111 9.78 1.63 40.96 5.01
3303 3397 1.303948 CCATGATGGACCAGTGGCA 59.696 57.895 9.78 0.00 40.96 4.92
3326 3420 1.628846 TGACTCCCTTGCCCTAGTTTC 59.371 52.381 0.00 0.00 0.00 2.78
3328 3422 0.991920 CTCCCTTGCCCTAGTTTCCA 59.008 55.000 0.00 0.00 0.00 3.53
3341 3435 1.133915 AGTTTCCAAAGAAGCCGACCA 60.134 47.619 0.00 0.00 33.97 4.02
3471 3569 9.474313 AAATCTAGGTAAAAATAGATGGTTGCA 57.526 29.630 0.00 0.00 38.46 4.08
3478 3576 5.425196 AAAATAGATGGTTGCATGCCTTT 57.575 34.783 16.68 0.00 0.00 3.11
3493 3591 2.017113 GCCTTTTGGGTCGTCATAGGG 61.017 57.143 0.00 0.00 40.82 3.53
3528 3626 1.228154 AACTTCTTCCACCACCGCC 60.228 57.895 0.00 0.00 0.00 6.13
3539 3637 3.803082 CACCGCCGAGCCATTGTG 61.803 66.667 0.00 0.00 0.00 3.33
3540 3638 4.329545 ACCGCCGAGCCATTGTGT 62.330 61.111 0.00 0.00 0.00 3.72
3541 3639 3.499737 CCGCCGAGCCATTGTGTC 61.500 66.667 0.00 0.00 0.00 3.67
3542 3640 2.434884 CGCCGAGCCATTGTGTCT 60.435 61.111 0.00 0.00 0.00 3.41
3543 3641 2.034879 CGCCGAGCCATTGTGTCTT 61.035 57.895 0.00 0.00 0.00 3.01
3544 3642 1.796796 GCCGAGCCATTGTGTCTTC 59.203 57.895 0.00 0.00 0.00 2.87
3545 3643 0.955428 GCCGAGCCATTGTGTCTTCA 60.955 55.000 0.00 0.00 0.00 3.02
3546 3644 0.798776 CCGAGCCATTGTGTCTTCAC 59.201 55.000 0.00 0.00 44.08 3.18
3547 3645 1.609061 CCGAGCCATTGTGTCTTCACT 60.609 52.381 0.00 0.00 44.14 3.41
3548 3646 1.728971 CGAGCCATTGTGTCTTCACTC 59.271 52.381 0.00 0.00 44.14 3.51
3549 3647 2.611473 CGAGCCATTGTGTCTTCACTCT 60.611 50.000 0.00 0.00 44.14 3.24
3550 3648 3.367395 CGAGCCATTGTGTCTTCACTCTA 60.367 47.826 0.00 0.00 44.14 2.43
3551 3649 4.679106 CGAGCCATTGTGTCTTCACTCTAT 60.679 45.833 0.00 0.00 44.14 1.98
3552 3650 4.511527 AGCCATTGTGTCTTCACTCTATG 58.488 43.478 0.00 0.00 44.14 2.23
3553 3651 4.019860 AGCCATTGTGTCTTCACTCTATGT 60.020 41.667 0.00 0.00 44.14 2.29
3555 3653 4.093998 CCATTGTGTCTTCACTCTATGTGC 59.906 45.833 0.00 0.00 45.81 4.57
3556 3654 4.607293 TTGTGTCTTCACTCTATGTGCT 57.393 40.909 0.00 0.00 45.81 4.40
3557 3655 4.607293 TGTGTCTTCACTCTATGTGCTT 57.393 40.909 0.00 0.00 45.81 3.91
3558 3656 4.309933 TGTGTCTTCACTCTATGTGCTTG 58.690 43.478 0.00 0.00 45.81 4.01
3559 3657 3.681897 GTGTCTTCACTCTATGTGCTTGG 59.318 47.826 0.00 0.00 45.81 3.61
3560 3658 2.675348 GTCTTCACTCTATGTGCTTGGC 59.325 50.000 0.00 0.00 45.81 4.52
3561 3659 2.302733 TCTTCACTCTATGTGCTTGGCA 59.697 45.455 0.00 0.00 45.81 4.92
3570 3668 2.989639 TGCTTGGCACCGCTAGAT 59.010 55.556 9.08 0.00 31.71 1.98
3571 3669 1.450134 TGCTTGGCACCGCTAGATG 60.450 57.895 9.08 0.00 31.71 2.90
3572 3670 1.153369 GCTTGGCACCGCTAGATGA 60.153 57.895 0.00 0.00 0.00 2.92
3573 3671 0.744414 GCTTGGCACCGCTAGATGAA 60.744 55.000 0.00 0.00 0.00 2.57
3574 3672 1.737838 CTTGGCACCGCTAGATGAAA 58.262 50.000 0.00 0.00 0.00 2.69
3575 3673 2.292267 CTTGGCACCGCTAGATGAAAT 58.708 47.619 0.00 0.00 0.00 2.17
3576 3674 2.418368 TGGCACCGCTAGATGAAATT 57.582 45.000 0.00 0.00 0.00 1.82
3577 3675 3.552132 TGGCACCGCTAGATGAAATTA 57.448 42.857 0.00 0.00 0.00 1.40
3578 3676 3.466836 TGGCACCGCTAGATGAAATTAG 58.533 45.455 0.00 0.00 0.00 1.73
3579 3677 3.118408 TGGCACCGCTAGATGAAATTAGT 60.118 43.478 0.00 0.00 0.00 2.24
3580 3678 4.100344 TGGCACCGCTAGATGAAATTAGTA 59.900 41.667 0.00 0.00 0.00 1.82
3585 3727 7.423199 CACCGCTAGATGAAATTAGTAGTGTA 58.577 38.462 0.00 0.00 0.00 2.90
3623 3765 2.095461 GGCCCCTTTCTAGCTCAAAAG 58.905 52.381 11.87 11.87 33.26 2.27
3698 3844 0.620556 AGGGCCATTCTTCGTCATGT 59.379 50.000 6.18 0.00 0.00 3.21
3700 3846 0.734889 GGCCATTCTTCGTCATGTGG 59.265 55.000 0.00 0.00 0.00 4.17
3701 3847 1.453155 GCCATTCTTCGTCATGTGGT 58.547 50.000 0.00 0.00 0.00 4.16
3706 3852 4.494484 CATTCTTCGTCATGTGGTGTCTA 58.506 43.478 0.00 0.00 0.00 2.59
3725 3871 7.159372 GTGTCTACTCCACTAAGAAAAATGGA 58.841 38.462 0.00 0.00 38.94 3.41
3731 3877 4.462483 TCCACTAAGAAAAATGGACATGGC 59.538 41.667 0.00 0.00 36.30 4.40
3743 3889 1.341383 GGACATGGCATGGTTCCTCTT 60.341 52.381 29.49 7.54 33.60 2.85
3744 3890 2.092429 GGACATGGCATGGTTCCTCTTA 60.092 50.000 29.49 0.00 33.60 2.10
3759 3905 4.620723 TCCTCTTAGCTTGGAGATGGTAA 58.379 43.478 14.62 0.00 0.00 2.85
3775 3921 3.626930 TGGTAACTGGTTGGCCATATTC 58.373 45.455 6.09 0.00 45.05 1.75
3779 3925 2.851195 ACTGGTTGGCCATATTCGATC 58.149 47.619 6.09 0.00 45.05 3.69
3831 3980 7.395772 CACACTCTACTATCAGGTATGGATGAT 59.604 40.741 0.00 0.00 39.44 2.45
3842 3991 7.118060 TCAGGTATGGATGATTGTTGATTGAA 58.882 34.615 0.00 0.00 0.00 2.69
3843 3992 7.614974 TCAGGTATGGATGATTGTTGATTGAAA 59.385 33.333 0.00 0.00 0.00 2.69
3852 4001 3.071874 TGTTGATTGAAAGCGGATCCT 57.928 42.857 10.75 0.00 0.00 3.24
3858 4007 0.036388 TGAAAGCGGATCCTGTGGAC 60.036 55.000 10.75 0.00 32.98 4.02
3891 4040 6.037786 ACTTCTCTTAACCGACATTCATGA 57.962 37.500 0.00 0.00 0.00 3.07
3903 4052 1.091197 ATTCATGATGAGTGCGCGCA 61.091 50.000 33.09 33.09 0.00 6.09
3918 4067 1.933181 CGCGCAGAGTTTGATGGATTA 59.067 47.619 8.75 0.00 0.00 1.75
3956 4105 1.334869 CTTCCACCCAAGCGCATTATC 59.665 52.381 11.47 0.00 0.00 1.75
4075 4224 2.385803 ACCGGGAAACTCGAGTATGAT 58.614 47.619 20.39 5.62 0.00 2.45
4076 4225 3.559069 ACCGGGAAACTCGAGTATGATA 58.441 45.455 20.39 0.00 0.00 2.15
4078 4227 4.587684 ACCGGGAAACTCGAGTATGATATT 59.412 41.667 20.39 8.17 0.00 1.28
4079 4228 5.162075 CCGGGAAACTCGAGTATGATATTC 58.838 45.833 20.39 16.70 0.00 1.75
4080 4229 4.852104 CGGGAAACTCGAGTATGATATTCG 59.148 45.833 20.39 10.61 38.98 3.34
4081 4230 5.162075 GGGAAACTCGAGTATGATATTCGG 58.838 45.833 20.39 9.87 38.29 4.30
4082 4231 5.048224 GGGAAACTCGAGTATGATATTCGGA 60.048 44.000 20.39 4.13 38.29 4.55
4083 4232 5.857517 GGAAACTCGAGTATGATATTCGGAC 59.142 44.000 20.39 1.91 38.29 4.79
4084 4233 5.373981 AACTCGAGTATGATATTCGGACC 57.626 43.478 20.39 0.00 38.29 4.46
4085 4234 4.653868 ACTCGAGTATGATATTCGGACCT 58.346 43.478 18.46 0.00 38.29 3.85
4086 4235 5.071370 ACTCGAGTATGATATTCGGACCTT 58.929 41.667 18.46 0.00 38.29 3.50
4087 4236 5.535406 ACTCGAGTATGATATTCGGACCTTT 59.465 40.000 18.46 0.00 38.29 3.11
4090 6291 5.402568 CGAGTATGATATTCGGACCTTTGTG 59.597 44.000 9.19 0.00 34.75 3.33
4092 6293 7.067496 AGTATGATATTCGGACCTTTGTGAT 57.933 36.000 0.00 0.00 0.00 3.06
4093 6294 7.155328 AGTATGATATTCGGACCTTTGTGATC 58.845 38.462 0.00 0.00 0.00 2.92
4094 6295 5.351948 TGATATTCGGACCTTTGTGATCA 57.648 39.130 0.00 0.00 0.00 2.92
4096 6297 6.356556 TGATATTCGGACCTTTGTGATCATT 58.643 36.000 0.00 0.00 0.00 2.57
4101 6302 5.739959 TCGGACCTTTGTGATCATTCATAA 58.260 37.500 0.00 0.00 33.56 1.90
4102 6303 6.356556 TCGGACCTTTGTGATCATTCATAAT 58.643 36.000 0.00 0.00 33.62 1.28
4291 6522 4.690748 TGTGTTTCAGCACATACTAAGCTC 59.309 41.667 0.00 0.00 43.54 4.09
4416 6647 1.542492 ATTGCTGCAGGAAAGACAGG 58.458 50.000 25.06 0.00 31.94 4.00
4426 6657 1.004745 GGAAAGACAGGCCTTCATGGA 59.995 52.381 0.00 0.00 38.35 3.41
4502 6733 4.320788 CCAGAAAAACATCAAGGACTCTGC 60.321 45.833 0.00 0.00 0.00 4.26
4581 6812 8.646004 TCTTAGTTCTATCTCAATCTGAATGGG 58.354 37.037 0.00 0.00 0.00 4.00
4635 6868 9.788960 AAACTTTGAGAACAAACACTAAATCTC 57.211 29.630 0.00 0.00 40.47 2.75
4644 6877 5.934625 ACAAACACTAAATCTCTGCACTAGG 59.065 40.000 0.00 0.00 0.00 3.02
4672 6909 1.000843 CCACGACAGATGGTGAACAGA 59.999 52.381 0.00 0.00 36.71 3.41
4859 7097 4.801330 TTCTTGGTCGACTGTGACATAT 57.199 40.909 16.46 0.00 40.72 1.78
4860 7098 4.801330 TCTTGGTCGACTGTGACATATT 57.199 40.909 16.46 0.00 40.72 1.28
4899 7137 5.423931 TGTTGACTAGTGGCATTATAGACCA 59.576 40.000 0.00 6.02 0.00 4.02
4900 7138 6.070481 TGTTGACTAGTGGCATTATAGACCAA 60.070 38.462 0.00 10.06 34.63 3.67
4946 7185 7.310485 GGTCATCCCTGAACCGAAGTTATATAT 60.310 40.741 0.00 0.00 35.94 0.86
4954 7193 6.873605 TGAACCGAAGTTATATATGGCATCAG 59.126 38.462 1.65 0.00 35.94 2.90
4964 7203 1.959042 ATGGCATCAGCTAAACCGAG 58.041 50.000 0.00 0.00 41.70 4.63
4978 7217 5.928264 GCTAAACCGAGGAAACTGTAACTTA 59.072 40.000 0.00 0.00 44.43 2.24
4979 7218 6.424812 GCTAAACCGAGGAAACTGTAACTTAA 59.575 38.462 0.00 0.00 44.43 1.85
4980 7219 7.118825 GCTAAACCGAGGAAACTGTAACTTAAT 59.881 37.037 0.00 0.00 44.43 1.40
4981 7220 6.796705 AACCGAGGAAACTGTAACTTAATG 57.203 37.500 0.00 0.00 44.43 1.90
5006 7249 3.791973 TTTGTGGTTGGTGTGATGTTC 57.208 42.857 0.00 0.00 0.00 3.18
5052 7295 4.558860 GTGTTTCTGTGAAAGAAGTTGTGC 59.441 41.667 0.00 0.00 45.64 4.57
5068 7311 0.394899 GTGCAGATAGGCCCTTGCTT 60.395 55.000 16.27 0.00 37.74 3.91
5070 7313 0.107017 GCAGATAGGCCCTTGCTTCA 60.107 55.000 0.00 0.00 37.74 3.02
5112 7358 5.457140 TCCGTTCACAATAAGATGTTTTGC 58.543 37.500 0.00 0.00 0.00 3.68
5149 7395 8.698973 TGGACTACAAATGGAGTAAAATGAAA 57.301 30.769 0.00 0.00 0.00 2.69
5167 7413 8.911247 AAATGAAAGAACAGACACACTAAAAC 57.089 30.769 0.00 0.00 0.00 2.43
5184 7430 9.920946 ACACTAAAACATGTTTATATCCATCCT 57.079 29.630 23.53 7.10 31.63 3.24
5238 7484 3.435671 GTGAACGGAGGGAGTACAAATTG 59.564 47.826 0.00 0.00 0.00 2.32
5239 7485 3.071892 TGAACGGAGGGAGTACAAATTGT 59.928 43.478 3.43 3.43 0.00 2.71
5241 7487 2.370849 ACGGAGGGAGTACAAATTGTGT 59.629 45.455 9.15 0.00 44.82 3.72
5261 7507 5.924254 TGTGTTAACTTTCACTACCATCGAG 59.076 40.000 7.22 0.00 35.82 4.04
5269 7515 6.153000 ACTTTCACTACCATCGAGATAACACT 59.847 38.462 0.00 0.00 0.00 3.55
5327 7573 2.724977 TGCTCTTACCGTGAAGACAG 57.275 50.000 0.00 0.00 32.05 3.51
5505 7751 2.742710 TTCTGCGGTTCGACTCCACG 62.743 60.000 6.63 0.00 0.00 4.94
5547 7793 2.721167 CCGGATGGAGCAGGAACGA 61.721 63.158 0.00 0.00 37.49 3.85
5615 7861 5.653330 TGATGCTGAGCTTTGATTCCAATAA 59.347 36.000 5.83 0.00 31.46 1.40
5618 7864 4.731773 GCTGAGCTTTGATTCCAATAACCG 60.732 45.833 0.00 0.00 31.46 4.44
5619 7865 4.331968 TGAGCTTTGATTCCAATAACCGT 58.668 39.130 0.00 0.00 31.46 4.83
6002 8248 9.967346 TTCACTAGCTTGAGTGTGTTATATATC 57.033 33.333 14.77 0.00 45.88 1.63
6035 8281 7.651304 TGCATGTTTATACTTTTTGTTGTGGAG 59.349 33.333 0.00 0.00 0.00 3.86
6107 8353 0.388006 GCCCGGGACAAAAATCAACG 60.388 55.000 29.31 0.00 0.00 4.10
6166 8412 5.727243 ATAAGTAAAGCATACCCCCACTT 57.273 39.130 0.00 0.00 0.00 3.16
6167 8413 6.835029 ATAAGTAAAGCATACCCCCACTTA 57.165 37.500 0.00 0.00 33.11 2.24
6175 8421 8.650143 AAAGCATACCCCCACTTATAATTATG 57.350 34.615 8.28 0.00 0.00 1.90
6291 8803 7.875327 TTATAAACTGGCCTCATTTTCTACC 57.125 36.000 3.32 0.00 30.19 3.18
6328 8840 7.611855 ACCCTTCGAGTATTTCTTGAAATGAAT 59.388 33.333 16.22 4.65 43.51 2.57
6392 8904 9.429359 CAAACTCTCATAATAATAGCCCTGTAG 57.571 37.037 0.00 0.00 0.00 2.74
6460 8973 1.295020 TGGGCTAACAACCAGGCTAT 58.705 50.000 0.00 0.00 38.56 2.97
6473 8986 7.517320 ACAACCAGGCTATCATTATTATGTCA 58.483 34.615 0.00 0.00 33.34 3.58
6517 9030 8.311650 TGTGACATAGAGCTAGAAAAGTTTTC 57.688 34.615 18.77 18.77 0.00 2.29
6518 9031 7.387948 TGTGACATAGAGCTAGAAAAGTTTTCC 59.612 37.037 21.92 9.32 0.00 3.13
6536 9051 2.529312 CCCCCTAGCCTCTTGTACC 58.471 63.158 0.00 0.00 0.00 3.34
6549 9064 0.685458 TTGTACCGCCCTCCCTAGAC 60.685 60.000 0.00 0.00 0.00 2.59
6573 9088 3.589988 GGTAGCGATCATACTCCCATTG 58.410 50.000 0.00 0.00 0.00 2.82
6634 9149 8.598916 TGGTAGTATCAAGTTTGAGAAATGGTA 58.401 33.333 0.74 0.00 41.08 3.25
6657 9177 8.211629 GGTAGCTCCTTAGGAATGATTTTAAGA 58.788 37.037 1.41 0.67 0.00 2.10
6736 9256 4.985538 TGGCAAGACAAAATTAGGAGTCT 58.014 39.130 0.00 0.00 42.72 3.24
6737 9257 4.761739 TGGCAAGACAAAATTAGGAGTCTG 59.238 41.667 0.00 0.00 40.22 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.870769 ACACTACTACACAGTTGTACTTGTT 58.129 36.000 0.00 0.00 38.47 2.83
1 2 6.461110 ACACTACTACACAGTTGTACTTGT 57.539 37.500 0.00 0.00 38.47 3.16
4 5 9.288576 TGTTATACACTACTACACAGTTGTACT 57.711 33.333 0.00 0.00 38.47 2.73
5 6 9.897744 TTGTTATACACTACTACACAGTTGTAC 57.102 33.333 0.00 0.00 38.47 2.90
7 8 9.635520 GATTGTTATACACTACTACACAGTTGT 57.364 33.333 0.00 0.00 40.72 3.32
8 9 9.634163 TGATTGTTATACACTACTACACAGTTG 57.366 33.333 0.00 0.00 36.14 3.16
53 54 3.586470 TTCCTTTAGGACTTTGCACCA 57.414 42.857 0.00 0.00 45.39 4.17
91 92 3.437049 GTCCATGTCCTCCTTTTCGAAAG 59.563 47.826 10.98 5.63 0.00 2.62
96 97 3.703001 TCAGTCCATGTCCTCCTTTTC 57.297 47.619 0.00 0.00 0.00 2.29
163 164 4.470602 TGACTGACTGTCTGAGTTAAGGA 58.529 43.478 19.67 0.00 45.54 3.36
195 196 5.505286 CATTAAATGGATGCGTCTTCACTC 58.495 41.667 5.77 0.00 0.00 3.51
251 255 2.251409 TCTAATCTGATGCCAGCAGC 57.749 50.000 4.78 0.00 40.20 5.25
282 286 3.722147 TCAGAGAGAACTTGCTGACAAC 58.278 45.455 0.00 0.00 32.85 3.32
373 405 2.292918 ACAGTGGAGGCTACTAATCCCA 60.293 50.000 0.00 0.00 31.73 4.37
607 640 8.556213 TTTTACCTGTGATAAATAGCGTTTCT 57.444 30.769 0.00 0.00 0.00 2.52
608 641 9.221775 CATTTTACCTGTGATAAATAGCGTTTC 57.778 33.333 0.00 0.00 0.00 2.78
654 687 5.253330 TGGGCTTATTTTTCTCAGTACTGG 58.747 41.667 22.48 13.18 0.00 4.00
804 838 5.299531 GTGGAGTGCATATAGTACAGACTCA 59.700 44.000 0.00 0.00 37.10 3.41
960 995 1.825474 ACAACGAGGTGGTGGAGATAG 59.175 52.381 0.00 0.00 0.00 2.08
1068 1103 3.842923 CAGGACGCGGAGGCAGAT 61.843 66.667 12.47 0.00 39.92 2.90
1159 1194 9.303116 AGAAGTTGAACTATAGAGAGAGTTTCA 57.697 33.333 6.78 1.24 37.24 2.69
1169 1204 6.874134 GCAAACAGGAGAAGTTGAACTATAGA 59.126 38.462 6.78 0.00 0.00 1.98
1170 1205 6.092807 GGCAAACAGGAGAAGTTGAACTATAG 59.907 42.308 0.00 0.00 0.00 1.31
1171 1206 5.938125 GGCAAACAGGAGAAGTTGAACTATA 59.062 40.000 0.00 0.00 0.00 1.31
1172 1207 4.762251 GGCAAACAGGAGAAGTTGAACTAT 59.238 41.667 0.00 0.00 0.00 2.12
1173 1208 4.134563 GGCAAACAGGAGAAGTTGAACTA 58.865 43.478 0.00 0.00 0.00 2.24
1174 1209 2.952310 GGCAAACAGGAGAAGTTGAACT 59.048 45.455 0.00 0.00 0.00 3.01
1175 1210 2.034685 GGGCAAACAGGAGAAGTTGAAC 59.965 50.000 0.00 0.00 0.00 3.18
1176 1211 2.091885 AGGGCAAACAGGAGAAGTTGAA 60.092 45.455 0.00 0.00 0.00 2.69
1177 1212 1.494721 AGGGCAAACAGGAGAAGTTGA 59.505 47.619 0.00 0.00 0.00 3.18
1178 1213 1.986882 AGGGCAAACAGGAGAAGTTG 58.013 50.000 0.00 0.00 0.00 3.16
1179 1214 2.175715 AGAAGGGCAAACAGGAGAAGTT 59.824 45.455 0.00 0.00 0.00 2.66
1180 1215 1.777272 AGAAGGGCAAACAGGAGAAGT 59.223 47.619 0.00 0.00 0.00 3.01
1181 1216 2.575805 AGAAGGGCAAACAGGAGAAG 57.424 50.000 0.00 0.00 0.00 2.85
1182 1217 3.650942 TCTAAGAAGGGCAAACAGGAGAA 59.349 43.478 0.00 0.00 0.00 2.87
1183 1218 3.248024 TCTAAGAAGGGCAAACAGGAGA 58.752 45.455 0.00 0.00 0.00 3.71
1184 1219 3.008485 ACTCTAAGAAGGGCAAACAGGAG 59.992 47.826 0.00 0.00 0.00 3.69
1185 1220 2.979678 ACTCTAAGAAGGGCAAACAGGA 59.020 45.455 0.00 0.00 0.00 3.86
1186 1221 3.425162 ACTCTAAGAAGGGCAAACAGG 57.575 47.619 0.00 0.00 0.00 4.00
1187 1222 3.433615 CGAACTCTAAGAAGGGCAAACAG 59.566 47.826 0.00 0.00 0.00 3.16
1188 1223 3.181458 ACGAACTCTAAGAAGGGCAAACA 60.181 43.478 0.00 0.00 0.00 2.83
1189 1224 3.400255 ACGAACTCTAAGAAGGGCAAAC 58.600 45.455 0.00 0.00 0.00 2.93
1190 1225 3.764237 ACGAACTCTAAGAAGGGCAAA 57.236 42.857 0.00 0.00 0.00 3.68
1191 1226 3.323979 AGAACGAACTCTAAGAAGGGCAA 59.676 43.478 0.00 0.00 0.00 4.52
1192 1227 2.897969 AGAACGAACTCTAAGAAGGGCA 59.102 45.455 0.00 0.00 0.00 5.36
1193 1228 3.056749 TCAGAACGAACTCTAAGAAGGGC 60.057 47.826 0.00 0.00 0.00 5.19
1194 1229 4.785511 TCAGAACGAACTCTAAGAAGGG 57.214 45.455 0.00 0.00 0.00 3.95
1195 1230 4.623595 GCTTCAGAACGAACTCTAAGAAGG 59.376 45.833 0.00 0.00 31.10 3.46
1196 1231 5.223382 TGCTTCAGAACGAACTCTAAGAAG 58.777 41.667 0.00 0.00 32.49 2.85
1197 1232 5.009710 TCTGCTTCAGAACGAACTCTAAGAA 59.990 40.000 0.00 0.00 37.57 2.52
1198 1233 4.519350 TCTGCTTCAGAACGAACTCTAAGA 59.481 41.667 0.00 0.00 37.57 2.10
1199 1234 4.799678 TCTGCTTCAGAACGAACTCTAAG 58.200 43.478 0.00 0.00 37.57 2.18
1200 1235 4.848562 TCTGCTTCAGAACGAACTCTAA 57.151 40.909 0.00 0.00 37.57 2.10
1201 1236 4.142359 GGATCTGCTTCAGAACGAACTCTA 60.142 45.833 0.27 0.00 44.04 2.43
1209 1274 4.438472 GCATTTCAGGATCTGCTTCAGAAC 60.438 45.833 0.27 0.00 44.04 3.01
1232 1297 3.044986 CAAAGAGTGCAAATCAACACGG 58.955 45.455 0.00 0.00 41.72 4.94
1260 1325 4.070552 GGAGAAGGCTCACGCGGT 62.071 66.667 12.47 0.00 43.14 5.68
1381 1447 5.245531 ACATGTATGTCAATGTTCCGTCTT 58.754 37.500 0.00 0.00 35.87 3.01
1407 1473 2.959516 TGTCTAGTGCCATCTGTTTCG 58.040 47.619 0.00 0.00 0.00 3.46
1415 1481 6.239176 GCTAGAGTCTATTTGTCTAGTGCCAT 60.239 42.308 0.00 0.00 41.26 4.40
1433 1499 4.917906 AAATTCCAGTTCCAGCTAGAGT 57.082 40.909 0.00 0.00 0.00 3.24
1442 1508 6.993079 ACATCCTGTTTAAAATTCCAGTTCC 58.007 36.000 0.00 0.00 0.00 3.62
1482 1548 5.123344 ACTCGCAGTAAACCATTAATCCAAC 59.877 40.000 0.00 0.00 0.00 3.77
1503 1570 9.908152 ACAGTATTTTTGGCACTTAATTAACTC 57.092 29.630 0.00 0.00 0.00 3.01
1504 1571 9.908152 GACAGTATTTTTGGCACTTAATTAACT 57.092 29.630 0.00 0.00 0.00 2.24
1511 1578 7.946207 TCAATTGACAGTATTTTTGGCACTTA 58.054 30.769 3.38 0.00 32.13 2.24
1516 1584 6.583806 CACTCTCAATTGACAGTATTTTTGGC 59.416 38.462 14.99 0.00 0.00 4.52
1523 1591 6.212235 CGCTATCACTCTCAATTGACAGTAT 58.788 40.000 14.99 11.49 0.00 2.12
1524 1592 5.582550 CGCTATCACTCTCAATTGACAGTA 58.417 41.667 14.99 5.95 0.00 2.74
1529 1597 2.799562 CGGCGCTATCACTCTCAATTGA 60.800 50.000 7.64 8.12 0.00 2.57
1530 1598 1.524355 CGGCGCTATCACTCTCAATTG 59.476 52.381 7.64 0.00 0.00 2.32
1531 1599 1.858091 CGGCGCTATCACTCTCAATT 58.142 50.000 7.64 0.00 0.00 2.32
1554 1622 3.838317 TGTTCTAGTCAAGGCTGTACCAT 59.162 43.478 0.00 0.00 43.14 3.55
1560 1628 4.756642 TGAATGTTGTTCTAGTCAAGGCTG 59.243 41.667 0.00 0.00 0.00 4.85
1562 1630 5.239525 AGTTGAATGTTGTTCTAGTCAAGGC 59.760 40.000 4.04 0.00 0.00 4.35
1566 1634 5.924356 TCCAGTTGAATGTTGTTCTAGTCA 58.076 37.500 0.00 0.00 0.00 3.41
1572 1640 3.004734 CACCCTCCAGTTGAATGTTGTTC 59.995 47.826 0.00 0.00 0.00 3.18
1586 1654 6.672218 TCAGAAATAGAACTATTCACCCTCCA 59.328 38.462 7.41 0.00 34.90 3.86
1587 1655 7.125792 TCAGAAATAGAACTATTCACCCTCC 57.874 40.000 7.41 0.00 34.90 4.30
1590 1658 6.697892 CGACTCAGAAATAGAACTATTCACCC 59.302 42.308 7.41 0.16 34.90 4.61
1604 1672 9.265901 CCATGAAATATAGTTCGACTCAGAAAT 57.734 33.333 8.28 0.00 32.88 2.17
1617 1685 5.013913 AGCAGCTGATCCCATGAAATATAGT 59.986 40.000 20.43 0.00 0.00 2.12
1674 1742 8.705594 CAGATAAAACTACTAGGGATTTCCAGA 58.294 37.037 0.00 0.00 38.24 3.86
1712 1781 5.046910 ACGATGATGTACAAAAGCAAAGG 57.953 39.130 0.00 0.00 0.00 3.11
1830 1905 6.580788 CATGCTTCATCGAAGGAGGATATAT 58.419 40.000 2.38 0.00 42.61 0.86
1831 1906 5.625426 GCATGCTTCATCGAAGGAGGATATA 60.625 44.000 11.37 0.00 42.61 0.86
1832 1907 4.829968 CATGCTTCATCGAAGGAGGATAT 58.170 43.478 2.38 0.00 42.61 1.63
1833 1908 3.555795 GCATGCTTCATCGAAGGAGGATA 60.556 47.826 11.37 0.00 42.61 2.59
1902 1977 3.482722 AAGCACAGATGAAGCAAATCG 57.517 42.857 0.00 0.00 0.00 3.34
1912 1987 6.630444 AAGGCAAAGATATAAGCACAGATG 57.370 37.500 0.00 0.00 0.00 2.90
1914 1989 6.763135 CACTAAGGCAAAGATATAAGCACAGA 59.237 38.462 0.00 0.00 0.00 3.41
1997 2072 2.197792 ATGCATGCTTACAATGTGCG 57.802 45.000 20.33 0.00 38.58 5.34
2005 2080 7.019774 TGTTTTCTCTCATATGCATGCTTAC 57.980 36.000 20.33 4.23 31.73 2.34
2038 2113 2.851195 AGAAGACCATGTGTTGTGACC 58.149 47.619 0.00 0.00 0.00 4.02
2312 2393 3.844211 AGATTCACTAAGCCCACCAACTA 59.156 43.478 0.00 0.00 0.00 2.24
2426 2507 2.377073 ACGTAGTTAAGGCTCCCTCTC 58.623 52.381 0.00 0.00 37.78 3.20
2428 2509 3.698539 AGTTACGTAGTTAAGGCTCCCTC 59.301 47.826 0.00 0.00 37.78 4.30
2443 2524 4.426736 TTTCTCCCCAAAGAAGTTACGT 57.573 40.909 0.00 0.00 36.66 3.57
2480 2561 1.811941 GCTAGGGTATGCTTGTGGCTC 60.812 57.143 0.00 0.00 42.39 4.70
2488 2569 2.723530 ATGGTAGGCTAGGGTATGCT 57.276 50.000 0.00 0.00 0.00 3.79
2489 2570 3.709587 TCTATGGTAGGCTAGGGTATGC 58.290 50.000 0.00 0.00 0.00 3.14
2490 2571 9.303116 CTTATATCTATGGTAGGCTAGGGTATG 57.697 40.741 0.00 0.00 0.00 2.39
2491 2572 8.457757 CCTTATATCTATGGTAGGCTAGGGTAT 58.542 40.741 0.00 0.00 0.00 2.73
2492 2573 7.642017 GCCTTATATCTATGGTAGGCTAGGGTA 60.642 44.444 0.00 0.00 43.67 3.69
2493 2574 6.684538 CCTTATATCTATGGTAGGCTAGGGT 58.315 44.000 0.00 0.00 0.00 4.34
2494 2575 5.540719 GCCTTATATCTATGGTAGGCTAGGG 59.459 48.000 0.00 0.00 43.67 3.53
2495 2576 6.658188 GCCTTATATCTATGGTAGGCTAGG 57.342 45.833 0.00 0.00 43.67 3.02
2499 2580 5.540719 CCCTAGCCTTATATCTATGGTAGGC 59.459 48.000 0.00 0.00 46.57 3.93
2500 2581 6.684538 ACCCTAGCCTTATATCTATGGTAGG 58.315 44.000 0.00 0.00 33.80 3.18
2501 2582 9.303116 CATACCCTAGCCTTATATCTATGGTAG 57.697 40.741 12.41 0.00 38.51 3.18
2502 2583 7.728981 GCATACCCTAGCCTTATATCTATGGTA 59.271 40.741 10.69 10.69 39.04 3.25
2503 2584 6.555360 GCATACCCTAGCCTTATATCTATGGT 59.445 42.308 0.00 0.00 37.49 3.55
2504 2585 6.784969 AGCATACCCTAGCCTTATATCTATGG 59.215 42.308 0.00 0.00 0.00 2.74
2568 2649 3.005791 ACTTTTTGGACTTACATGGCTGC 59.994 43.478 0.00 0.00 0.00 5.25
2594 2675 9.620259 TTGTGTGTTATTGCCACATATATCTTA 57.380 29.630 0.00 0.00 44.03 2.10
2603 2684 2.293122 GCTCTTGTGTGTTATTGCCACA 59.707 45.455 0.00 0.00 40.35 4.17
2670 2764 5.531287 GGCTTTCATCGATACCTTGGTATTT 59.469 40.000 12.94 0.70 0.00 1.40
2672 2766 4.642429 GGCTTTCATCGATACCTTGGTAT 58.358 43.478 11.71 11.71 0.00 2.73
2681 2775 1.286501 GTGTGCGGCTTTCATCGATA 58.713 50.000 0.00 0.00 0.00 2.92
2684 2778 2.480555 GGTGTGCGGCTTTCATCG 59.519 61.111 0.00 0.00 0.00 3.84
2685 2779 2.480555 CGGTGTGCGGCTTTCATC 59.519 61.111 0.00 0.00 0.00 2.92
2754 2848 0.108585 ACCCCGCTAACTATGCCATG 59.891 55.000 0.00 0.00 0.00 3.66
2782 2876 2.069273 GCTCGTAGTGATGCAAGTGTT 58.931 47.619 0.00 0.00 0.00 3.32
2798 2892 4.497006 CCATTTTGATTCTTAGGCTGCTCG 60.497 45.833 0.00 0.00 0.00 5.03
2888 2982 1.366679 GCTTTACTAGACCGTTGGGC 58.633 55.000 0.00 0.00 36.48 5.36
2894 2988 2.029623 TGGCTAGGCTTTACTAGACCG 58.970 52.381 18.18 0.00 46.47 4.79
2982 3076 5.298276 ACCGAAATGATGTTGTTGTGTAACT 59.702 36.000 0.00 0.00 38.04 2.24
3151 3245 6.741992 TGAACCAATATTGCTAGTGTTCTG 57.258 37.500 23.32 7.42 0.00 3.02
3253 3347 2.831526 GGCCCATTTATGGTTGTCAAGT 59.168 45.455 7.92 0.00 46.65 3.16
3302 3396 0.984230 TAGGGCAAGGGAGTCAGTTG 59.016 55.000 0.00 0.00 0.00 3.16
3303 3397 1.280457 CTAGGGCAAGGGAGTCAGTT 58.720 55.000 0.00 0.00 0.00 3.16
3326 3420 2.360801 TCTTTTTGGTCGGCTTCTTTGG 59.639 45.455 0.00 0.00 0.00 3.28
3328 3422 2.361119 GGTCTTTTTGGTCGGCTTCTTT 59.639 45.455 0.00 0.00 0.00 2.52
3401 3495 3.434167 GCTGCTCTAAAGATGGGAATGGA 60.434 47.826 0.00 0.00 0.00 3.41
3471 3569 2.643551 CTATGACGACCCAAAAGGCAT 58.356 47.619 0.00 0.00 40.58 4.40
3478 3576 0.042131 AGTCCCCTATGACGACCCAA 59.958 55.000 0.00 0.00 40.26 4.12
3493 3591 0.035915 GTTGGGAGCCTCAAGAGTCC 60.036 60.000 0.00 0.00 0.00 3.85
3553 3651 1.450134 CATCTAGCGGTGCCAAGCA 60.450 57.895 0.00 0.00 35.60 3.91
3554 3652 0.744414 TTCATCTAGCGGTGCCAAGC 60.744 55.000 0.00 0.00 0.00 4.01
3555 3653 1.737838 TTTCATCTAGCGGTGCCAAG 58.262 50.000 0.00 0.00 0.00 3.61
3556 3654 2.418368 ATTTCATCTAGCGGTGCCAA 57.582 45.000 0.00 0.00 0.00 4.52
3557 3655 2.418368 AATTTCATCTAGCGGTGCCA 57.582 45.000 0.00 0.00 0.00 4.92
3558 3656 3.467803 ACTAATTTCATCTAGCGGTGCC 58.532 45.455 0.00 0.00 0.00 5.01
3559 3657 5.175856 CACTACTAATTTCATCTAGCGGTGC 59.824 44.000 0.00 0.00 0.00 5.01
3560 3658 6.273825 ACACTACTAATTTCATCTAGCGGTG 58.726 40.000 0.00 0.00 32.23 4.94
3561 3659 6.466885 ACACTACTAATTTCATCTAGCGGT 57.533 37.500 0.00 0.00 0.00 5.68
3562 3660 8.916654 CAATACACTACTAATTTCATCTAGCGG 58.083 37.037 0.00 0.00 0.00 5.52
3563 3661 8.916654 CCAATACACTACTAATTTCATCTAGCG 58.083 37.037 0.00 0.00 0.00 4.26
3564 3662 9.982651 TCCAATACACTACTAATTTCATCTAGC 57.017 33.333 0.00 0.00 0.00 3.42
3577 3675 9.770097 CTTGTCATCATTATCCAATACACTACT 57.230 33.333 0.00 0.00 0.00 2.57
3578 3676 8.993121 CCTTGTCATCATTATCCAATACACTAC 58.007 37.037 0.00 0.00 0.00 2.73
3579 3677 7.661437 GCCTTGTCATCATTATCCAATACACTA 59.339 37.037 0.00 0.00 0.00 2.74
3580 3678 6.488006 GCCTTGTCATCATTATCCAATACACT 59.512 38.462 0.00 0.00 0.00 3.55
3585 3727 4.154942 GGGCCTTGTCATCATTATCCAAT 58.845 43.478 0.84 0.00 0.00 3.16
3623 3765 1.666189 GGCAATGGAAGACGAGTAAGC 59.334 52.381 0.00 0.00 0.00 3.09
3627 3769 1.079127 CGGGCAATGGAAGACGAGT 60.079 57.895 0.00 0.00 0.00 4.18
3698 3844 6.488769 TTTTTCTTAGTGGAGTAGACACCA 57.511 37.500 0.00 0.00 39.63 4.17
3700 3846 7.117956 GTCCATTTTTCTTAGTGGAGTAGACAC 59.882 40.741 0.00 0.00 41.14 3.67
3701 3847 7.159372 GTCCATTTTTCTTAGTGGAGTAGACA 58.841 38.462 0.00 0.00 41.14 3.41
3706 3852 5.711976 CCATGTCCATTTTTCTTAGTGGAGT 59.288 40.000 0.00 0.00 41.14 3.85
3717 3863 3.307621 GGAACCATGCCATGTCCATTTTT 60.308 43.478 8.96 0.00 0.00 1.94
3725 3871 2.684927 GCTAAGAGGAACCATGCCATGT 60.685 50.000 3.63 0.00 0.00 3.21
3731 3877 3.198635 TCTCCAAGCTAAGAGGAACCATG 59.801 47.826 11.83 0.00 0.00 3.66
3743 3889 3.450904 ACCAGTTACCATCTCCAAGCTA 58.549 45.455 0.00 0.00 0.00 3.32
3744 3890 2.269940 ACCAGTTACCATCTCCAAGCT 58.730 47.619 0.00 0.00 0.00 3.74
3775 3921 4.770874 AAACCACCCGGCCGATCG 62.771 66.667 30.73 16.23 34.57 3.69
3795 3944 6.365520 TGATAGTAGAGTGTGAGCATCCTAA 58.634 40.000 0.00 0.00 0.00 2.69
3809 3958 8.359875 ACAATCATCCATACCTGATAGTAGAG 57.640 38.462 0.00 0.00 31.95 2.43
3810 3959 8.588472 CAACAATCATCCATACCTGATAGTAGA 58.412 37.037 0.00 0.00 31.95 2.59
3831 3980 3.191162 CAGGATCCGCTTTCAATCAACAA 59.809 43.478 5.98 0.00 0.00 2.83
3842 3991 1.599047 CAGTCCACAGGATCCGCTT 59.401 57.895 5.98 0.00 32.73 4.68
3843 3992 2.362369 CCAGTCCACAGGATCCGCT 61.362 63.158 5.98 0.00 32.73 5.52
3852 4001 6.019656 AGAGAAGTATAGATCCAGTCCACA 57.980 41.667 0.00 0.00 0.00 4.17
3858 4007 7.228906 TGTCGGTTAAGAGAAGTATAGATCCAG 59.771 40.741 0.00 0.00 0.00 3.86
3891 4040 1.669115 AAACTCTGCGCGCACTCAT 60.669 52.632 33.09 14.48 0.00 2.90
3903 4052 4.592942 TGCAAGCTAATCCATCAAACTCT 58.407 39.130 0.00 0.00 0.00 3.24
3932 4081 3.056313 GCGCTTGGGTGGAAGATGC 62.056 63.158 0.00 0.00 0.00 3.91
3956 4105 6.417339 TGACATTGTCATTTCAACACAATTCG 59.583 34.615 15.41 0.00 38.43 3.34
4075 4224 5.739959 TGAATGATCACAAAGGTCCGAATA 58.260 37.500 0.00 0.00 0.00 1.75
4076 4225 4.588899 TGAATGATCACAAAGGTCCGAAT 58.411 39.130 0.00 0.00 0.00 3.34
4078 4227 3.694043 TGAATGATCACAAAGGTCCGA 57.306 42.857 0.00 0.00 0.00 4.55
4079 4228 6.624352 ATTATGAATGATCACAAAGGTCCG 57.376 37.500 0.00 0.00 38.69 4.79
4127 6329 1.202076 GCTAGAACGAAACATGCCTGC 60.202 52.381 0.00 0.00 0.00 4.85
4136 6338 5.001232 ACAAGGCTTTATGCTAGAACGAAA 58.999 37.500 0.00 0.00 42.39 3.46
4139 6341 3.684788 ACACAAGGCTTTATGCTAGAACG 59.315 43.478 0.00 0.00 42.39 3.95
4200 6402 7.031372 CGTACTTATAAGAGCAGTGGTGTAAA 58.969 38.462 19.38 0.00 0.00 2.01
4239 6441 6.841443 AATGAGAACTAGAAATGCAGATCG 57.159 37.500 0.00 0.00 0.00 3.69
4351 6582 1.908483 GGAGGGCGAGTCAGGATTT 59.092 57.895 0.00 0.00 0.00 2.17
4416 6647 3.627577 ACGTATGTTTGATCCATGAAGGC 59.372 43.478 0.00 0.00 37.29 4.35
4426 6657 4.637276 TGAGGTGTGAACGTATGTTTGAT 58.363 39.130 0.98 0.00 38.78 2.57
4581 6812 5.689383 ATATAAAATCATGCACGGGACAC 57.311 39.130 0.00 0.00 0.00 3.67
4818 7056 9.586435 CCAAGAATTAACTAATTTCCCATGTTC 57.414 33.333 0.00 0.00 36.13 3.18
4819 7057 9.100197 ACCAAGAATTAACTAATTTCCCATGTT 57.900 29.630 0.00 0.00 36.13 2.71
4946 7185 0.107703 CCTCGGTTTAGCTGATGCCA 60.108 55.000 0.00 0.00 40.80 4.92
4954 7193 4.313282 AGTTACAGTTTCCTCGGTTTAGC 58.687 43.478 0.00 0.00 0.00 3.09
4964 7203 8.410912 ACAAAACCTCATTAAGTTACAGTTTCC 58.589 33.333 0.00 0.00 0.00 3.13
4978 7217 3.103742 ACACCAACCACAAAACCTCATT 58.896 40.909 0.00 0.00 0.00 2.57
4979 7218 2.430332 CACACCAACCACAAAACCTCAT 59.570 45.455 0.00 0.00 0.00 2.90
4980 7219 1.821753 CACACCAACCACAAAACCTCA 59.178 47.619 0.00 0.00 0.00 3.86
4981 7220 2.096248 TCACACCAACCACAAAACCTC 58.904 47.619 0.00 0.00 0.00 3.85
5006 7249 9.449719 ACACCAGTTTTACAGATAGGAAAATAG 57.550 33.333 0.00 0.00 0.00 1.73
5052 7295 2.106166 AGATGAAGCAAGGGCCTATCTG 59.894 50.000 6.41 2.07 42.56 2.90
5068 7311 3.898123 GAGGGAGTACCATAGCAAGATGA 59.102 47.826 0.00 0.00 43.89 2.92
5070 7313 3.243724 GGAGGGAGTACCATAGCAAGAT 58.756 50.000 0.00 0.00 43.89 2.40
5133 7379 8.352942 GTGTCTGTTCTTTCATTTTACTCCATT 58.647 33.333 0.00 0.00 0.00 3.16
5141 7387 9.353999 GTTTTAGTGTGTCTGTTCTTTCATTTT 57.646 29.630 0.00 0.00 0.00 1.82
5149 7395 7.391148 AAACATGTTTTAGTGTGTCTGTTCT 57.609 32.000 18.13 0.00 0.00 3.01
5238 7484 6.154445 TCTCGATGGTAGTGAAAGTTAACAC 58.846 40.000 8.61 0.00 37.30 3.32
5239 7485 6.335471 TCTCGATGGTAGTGAAAGTTAACA 57.665 37.500 8.61 0.00 0.00 2.41
5241 7487 8.525316 TGTTATCTCGATGGTAGTGAAAGTTAA 58.475 33.333 0.00 0.00 0.00 2.01
5261 7507 5.501715 CCGTTTACATGCATGAGTGTTATC 58.498 41.667 32.75 12.45 0.00 1.75
5269 7515 4.792380 GCATATTGCCGTTTACATGCATGA 60.792 41.667 32.75 13.72 38.84 3.07
5485 7731 1.009389 GTGGAGTCGAACCGCAGAAG 61.009 60.000 15.54 0.00 37.78 2.85
5547 7793 1.746615 CGCAGGCTGCTGGTAATGT 60.747 57.895 34.17 0.00 42.25 2.71
5615 7861 1.591594 CACTGTTCGTGCTGACGGT 60.592 57.895 0.00 0.00 46.11 4.83
5704 7950 1.138036 CGCCATCGGTTGTAGACGA 59.862 57.895 0.00 0.00 43.85 4.20
5726 7972 2.974698 ACGTCGAGAACCCGTCGT 60.975 61.111 0.00 0.00 45.78 4.34
6002 8248 9.153721 ACAAAAAGTATAAACATGCATTGATGG 57.846 29.630 0.00 0.00 0.00 3.51
6035 8281 1.031571 TTGACCATGGCTCCGCATTC 61.032 55.000 13.04 0.00 0.00 2.67
6069 8315 1.549950 GCCCCCAAATTTCTGGAGACA 60.550 52.381 5.07 0.00 38.96 3.41
6330 8842 9.784531 AGATTAATTATGAAGATGTGACCGAAT 57.215 29.630 0.00 0.00 0.00 3.34
6460 8973 7.308529 GCCGATCAATGGTTGACATAATAATGA 60.309 37.037 0.00 0.00 43.48 2.57
6473 8986 3.057315 CACAGAAAAGCCGATCAATGGTT 60.057 43.478 0.00 0.00 0.00 3.67
6483 8996 2.349886 GCTCTATGTCACAGAAAAGCCG 59.650 50.000 0.00 0.00 0.00 5.52
6518 9031 1.400530 CGGTACAAGAGGCTAGGGGG 61.401 65.000 0.00 0.00 0.00 5.40
6549 9064 1.546476 GGGAGTATGATCGCTACCCAG 59.454 57.143 0.00 0.00 36.27 4.45
6557 9072 5.853936 TCCTAAACAATGGGAGTATGATCG 58.146 41.667 0.00 0.00 0.00 3.69
6573 9088 4.409247 TCTCCCTAAGCCAGATTCCTAAAC 59.591 45.833 0.00 0.00 0.00 2.01
6634 9149 9.706529 ATTTCTTAAAATCATTCCTAAGGAGCT 57.293 29.630 0.00 0.00 28.21 4.09
6657 9177 9.314133 AGCCTTCCAAATTTTCTCTACTAATTT 57.686 29.630 0.00 0.00 33.12 1.82
6736 9256 3.611025 ACCCTTTGGTGATTTTCCTCA 57.389 42.857 0.00 0.00 45.58 3.86
6764 9284 8.776061 ACTTCCTAAGTTCAGCTTCTATATCT 57.224 34.615 0.00 0.00 39.04 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.