Multiple sequence alignment - TraesCS3D01G336900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G336900 chr3D 100.000 4370 0 0 1 4370 448498131 448493762 0.000000e+00 8070.0
1 TraesCS3D01G336900 chr3D 86.130 584 77 4 2767 3348 95564513 95565094 1.030000e-175 627.0
2 TraesCS3D01G336900 chr3D 85.638 376 52 2 1343 1717 95562466 95562840 1.140000e-105 394.0
3 TraesCS3D01G336900 chr3D 85.294 136 18 2 41 174 4862619 4862484 5.890000e-29 139.0
4 TraesCS3D01G336900 chr3B 92.723 2817 114 41 777 3547 588696870 588694099 0.000000e+00 3982.0
5 TraesCS3D01G336900 chr3B 85.714 581 79 4 2767 3345 146553717 146554295 1.040000e-170 610.0
6 TraesCS3D01G336900 chr3B 84.840 376 55 2 1343 1717 146551402 146551776 1.150000e-100 377.0
7 TraesCS3D01G336900 chr3B 90.734 259 14 8 3703 3954 588693912 588693657 1.950000e-88 337.0
8 TraesCS3D01G336900 chr3B 79.261 352 61 10 1001 1346 146550933 146551278 7.310000e-58 235.0
9 TraesCS3D01G336900 chr3B 82.482 137 23 1 41 176 750405154 750405290 7.680000e-23 119.0
10 TraesCS3D01G336900 chr3A 94.508 1748 62 15 703 2431 589826834 589825102 0.000000e+00 2665.0
11 TraesCS3D01G336900 chr3A 96.855 795 21 2 2753 3547 589824883 589824093 0.000000e+00 1327.0
12 TraesCS3D01G336900 chr3A 85.959 584 78 4 2767 3348 113713627 113714208 4.800000e-174 621.0
13 TraesCS3D01G336900 chr3A 95.899 317 13 0 4054 4370 192818521 192818837 8.380000e-142 514.0
14 TraesCS3D01G336900 chr3A 89.381 339 27 5 338 669 589827249 589826913 6.760000e-113 418.0
15 TraesCS3D01G336900 chr3A 90.970 299 15 5 3759 4055 589823878 589823590 4.100000e-105 392.0
16 TraesCS3D01G336900 chr3A 85.106 376 54 2 1343 1717 113710315 113710689 2.470000e-102 383.0
17 TraesCS3D01G336900 chr3A 83.446 296 45 4 41 335 589827873 589827581 5.570000e-69 272.0
18 TraesCS3D01G336900 chr3A 84.190 253 34 5 1097 1346 113709954 113710203 1.570000e-59 241.0
19 TraesCS3D01G336900 chr3A 78.689 122 10 7 2463 2578 589825049 589824938 2.820000e-07 67.6
20 TraesCS3D01G336900 chr2D 87.023 786 102 0 999 1784 382380283 382381068 0.000000e+00 887.0
21 TraesCS3D01G336900 chr2D 88.314 599 68 2 2769 3366 382384568 382385165 0.000000e+00 717.0
22 TraesCS3D01G336900 chr2D 95.253 316 14 1 4055 4370 625585113 625584799 2.350000e-137 499.0
23 TraesCS3D01G336900 chr2B 84.987 786 99 7 999 1784 453178772 453179538 0.000000e+00 780.0
24 TraesCS3D01G336900 chr2B 87.980 599 70 2 2765 3362 453182991 453183588 0.000000e+00 706.0
25 TraesCS3D01G336900 chr2B 79.097 598 111 11 1127 1717 157372951 157373541 2.450000e-107 399.0
26 TraesCS3D01G336900 chr2B 86.604 321 23 11 4050 4370 250686446 250686146 1.950000e-88 337.0
27 TraesCS3D01G336900 chr5A 83.221 596 94 6 2765 3357 691400112 691399520 3.840000e-150 542.0
28 TraesCS3D01G336900 chr5A 95.268 317 15 0 4054 4370 623226891 623226575 1.810000e-138 503.0
29 TraesCS3D01G336900 chr7D 95.873 315 13 0 4056 4370 603246747 603247061 1.080000e-140 510.0
30 TraesCS3D01G336900 chr7D 88.328 317 18 12 4054 4370 95837803 95838100 3.210000e-96 363.0
31 TraesCS3D01G336900 chr7D 82.946 129 21 1 42 169 538823877 538823749 9.930000e-22 115.0
32 TraesCS3D01G336900 chr7D 97.436 39 1 0 4053 4091 66544206 66544168 2.820000e-07 67.6
33 TraesCS3D01G336900 chr7D 100.000 30 0 0 269 298 12104486 12104515 6.110000e-04 56.5
34 TraesCS3D01G336900 chr7D 100.000 30 0 0 269 298 170509615 170509586 6.110000e-04 56.5
35 TraesCS3D01G336900 chr7D 100.000 30 0 0 269 298 603675869 603675840 6.110000e-04 56.5
36 TraesCS3D01G336900 chrUn 81.834 589 97 10 2765 3348 126800065 126800648 1.830000e-133 486.0
37 TraesCS3D01G336900 chr7B 91.483 317 26 1 4055 4370 616311374 616311690 6.710000e-118 435.0
38 TraesCS3D01G336900 chr7B 79.700 601 102 16 1127 1717 536639441 536640031 2.430000e-112 416.0
39 TraesCS3D01G336900 chr7B 88.254 315 18 10 4056 4370 685114368 685114663 4.160000e-95 359.0
40 TraesCS3D01G336900 chr4D 97.248 218 6 0 4153 4370 3410555 3410772 1.920000e-98 370.0
41 TraesCS3D01G336900 chr4D 96.330 218 8 0 4153 4370 3405660 3405877 4.160000e-95 359.0
42 TraesCS3D01G336900 chr4D 100.000 30 0 0 269 298 66142116 66142145 6.110000e-04 56.5
43 TraesCS3D01G336900 chr4D 100.000 30 0 0 269 298 300144703 300144674 6.110000e-04 56.5
44 TraesCS3D01G336900 chr5B 83.133 166 26 2 11 174 568849407 568849242 2.720000e-32 150.0
45 TraesCS3D01G336900 chr4B 81.657 169 25 6 11 176 375375702 375375867 7.620000e-28 135.0
46 TraesCS3D01G336900 chr7A 83.453 139 14 7 41 174 181694450 181694316 2.130000e-23 121.0
47 TraesCS3D01G336900 chr7A 78.808 151 32 0 13 163 641444535 641444685 7.730000e-18 102.0
48 TraesCS3D01G336900 chr2A 82.609 138 22 2 41 176 176334753 176334616 2.130000e-23 121.0
49 TraesCS3D01G336900 chr6D 100.000 30 0 0 269 298 35010430 35010401 6.110000e-04 56.5
50 TraesCS3D01G336900 chr1D 100.000 30 0 0 269 298 3783780 3783751 6.110000e-04 56.5
51 TraesCS3D01G336900 chr1D 100.000 30 0 0 269 298 41369819 41369790 6.110000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G336900 chr3D 448493762 448498131 4369 True 8070.000000 8070 100.000000 1 4370 1 chr3D.!!$R2 4369
1 TraesCS3D01G336900 chr3D 95562466 95565094 2628 False 510.500000 627 85.884000 1343 3348 2 chr3D.!!$F1 2005
2 TraesCS3D01G336900 chr3B 588693657 588696870 3213 True 2159.500000 3982 91.728500 777 3954 2 chr3B.!!$R1 3177
3 TraesCS3D01G336900 chr3B 146550933 146554295 3362 False 407.333333 610 83.271667 1001 3345 3 chr3B.!!$F2 2344
4 TraesCS3D01G336900 chr3A 589823590 589827873 4283 True 856.933333 2665 88.974833 41 4055 6 chr3A.!!$R1 4014
5 TraesCS3D01G336900 chr3A 113709954 113714208 4254 False 415.000000 621 85.085000 1097 3348 3 chr3A.!!$F2 2251
6 TraesCS3D01G336900 chr2D 382380283 382385165 4882 False 802.000000 887 87.668500 999 3366 2 chr2D.!!$F1 2367
7 TraesCS3D01G336900 chr2B 453178772 453183588 4816 False 743.000000 780 86.483500 999 3362 2 chr2B.!!$F2 2363
8 TraesCS3D01G336900 chr2B 157372951 157373541 590 False 399.000000 399 79.097000 1127 1717 1 chr2B.!!$F1 590
9 TraesCS3D01G336900 chr5A 691399520 691400112 592 True 542.000000 542 83.221000 2765 3357 1 chr5A.!!$R2 592
10 TraesCS3D01G336900 chrUn 126800065 126800648 583 False 486.000000 486 81.834000 2765 3348 1 chrUn.!!$F1 583
11 TraesCS3D01G336900 chr7B 536639441 536640031 590 False 416.000000 416 79.700000 1127 1717 1 chr7B.!!$F1 590

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
660 998 0.179018 CTCCCTCCGGCCTAAATTGG 60.179 60.000 0.0 0.0 0.0 3.16 F
928 1325 0.396556 ACAGAACAACCAACCCCACC 60.397 55.000 0.0 0.0 0.0 4.61 F
2214 8972 1.077930 CACATCTGGGGCTGGAGTG 60.078 63.158 0.0 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2478 9270 0.243636 CCAAATCCACGAAGGCCAAC 59.756 55.0 5.01 0.00 37.29 3.77 R
2485 9277 0.682855 GATGGGGCCAAATCCACGAA 60.683 55.0 4.39 0.00 35.67 3.85 R
3877 11101 0.034756 GCAACAACCAATTGGGGGAC 59.965 55.0 27.89 8.84 42.91 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.905075 TGGAACAAGTCATCATAGGCG 58.095 47.619 0.00 0.00 31.92 5.52
25 26 2.236146 TGGAACAAGTCATCATAGGCGT 59.764 45.455 0.00 0.00 31.92 5.68
26 27 2.866762 GGAACAAGTCATCATAGGCGTC 59.133 50.000 0.00 0.00 0.00 5.19
27 28 3.430929 GGAACAAGTCATCATAGGCGTCT 60.431 47.826 0.00 0.00 0.00 4.18
28 29 3.444703 ACAAGTCATCATAGGCGTCTC 57.555 47.619 0.00 0.00 0.00 3.36
29 30 2.223595 ACAAGTCATCATAGGCGTCTCG 60.224 50.000 0.00 0.00 0.00 4.04
30 31 1.681538 AGTCATCATAGGCGTCTCGT 58.318 50.000 0.00 0.00 0.00 4.18
31 32 2.847441 AGTCATCATAGGCGTCTCGTA 58.153 47.619 0.00 0.00 0.00 3.43
32 33 3.211865 AGTCATCATAGGCGTCTCGTAA 58.788 45.455 0.00 0.00 0.00 3.18
33 34 3.821600 AGTCATCATAGGCGTCTCGTAAT 59.178 43.478 0.00 0.00 0.00 1.89
34 35 4.278669 AGTCATCATAGGCGTCTCGTAATT 59.721 41.667 0.00 0.00 0.00 1.40
35 36 4.982916 GTCATCATAGGCGTCTCGTAATTT 59.017 41.667 0.00 0.00 0.00 1.82
36 37 6.016527 AGTCATCATAGGCGTCTCGTAATTTA 60.017 38.462 0.00 0.00 0.00 1.40
37 38 6.305877 GTCATCATAGGCGTCTCGTAATTTAG 59.694 42.308 0.00 0.00 0.00 1.85
38 39 6.206048 TCATCATAGGCGTCTCGTAATTTAGA 59.794 38.462 0.00 0.00 0.00 2.10
39 40 6.381481 TCATAGGCGTCTCGTAATTTAGAA 57.619 37.500 0.00 0.00 0.00 2.10
62 63 2.334838 ACGTCTTCTACCATTGAACGC 58.665 47.619 0.00 0.00 0.00 4.84
63 64 2.288579 ACGTCTTCTACCATTGAACGCA 60.289 45.455 0.00 0.00 0.00 5.24
64 65 2.930040 CGTCTTCTACCATTGAACGCAT 59.070 45.455 0.00 0.00 0.00 4.73
68 69 5.753438 GTCTTCTACCATTGAACGCATATCA 59.247 40.000 0.00 0.00 0.00 2.15
72 73 2.807967 ACCATTGAACGCATATCATCGG 59.192 45.455 0.00 0.00 0.00 4.18
77 78 4.990543 TGAACGCATATCATCGGAAATC 57.009 40.909 0.00 0.00 0.00 2.17
92 93 7.559533 TCATCGGAAATCCTGAAATAAATCCAA 59.440 33.333 0.00 0.00 0.00 3.53
110 111 4.693283 TCCAAGATAAATACGAGCACCAG 58.307 43.478 0.00 0.00 0.00 4.00
116 117 5.760253 AGATAAATACGAGCACCAGGATTTG 59.240 40.000 0.00 0.00 0.00 2.32
119 120 2.496899 ACGAGCACCAGGATTTGAAT 57.503 45.000 0.00 0.00 0.00 2.57
132 133 2.122783 TTTGAATCCGGTTAGGCTGG 57.877 50.000 0.00 0.00 45.18 4.85
134 135 1.148498 GAATCCGGTTAGGCTGGGG 59.852 63.158 0.00 0.00 43.94 4.96
138 139 0.761702 TCCGGTTAGGCTGGGGATAC 60.762 60.000 0.00 0.00 43.94 2.24
165 166 4.513692 TGTCTTTCTAAACATCCAACCACG 59.486 41.667 0.00 0.00 0.00 4.94
166 167 4.069304 TCTTTCTAAACATCCAACCACGG 58.931 43.478 0.00 0.00 0.00 4.94
169 170 1.810151 CTAAACATCCAACCACGGGTG 59.190 52.381 0.00 0.00 43.37 4.61
185 187 4.812476 TGGTTCGCGCCTGGATCG 62.812 66.667 0.00 0.00 0.00 3.69
194 196 1.699656 CGCCTGGATCGAAGTTGCAG 61.700 60.000 0.00 0.00 32.84 4.41
229 231 2.362736 TGAAGCCATCACAAGCATCTC 58.637 47.619 0.00 0.00 31.50 2.75
278 280 7.120726 ACTGAAAAATATTTTGTACTCCCTCCG 59.879 37.037 14.04 4.93 0.00 4.63
358 689 7.672983 ATCTAGTGTGTTTGTTCGATCATTT 57.327 32.000 0.00 0.00 0.00 2.32
363 694 5.621228 GTGTGTTTGTTCGATCATTTCAGTC 59.379 40.000 0.00 0.00 0.00 3.51
364 695 5.147162 GTGTTTGTTCGATCATTTCAGTCC 58.853 41.667 0.00 0.00 0.00 3.85
365 696 4.084066 TGTTTGTTCGATCATTTCAGTCCG 60.084 41.667 0.00 0.00 0.00 4.79
377 708 7.634671 TCATTTCAGTCCGTATGTAGTCTAA 57.365 36.000 0.00 0.00 0.00 2.10
388 719 8.512956 TCCGTATGTAGTCTAAGCTGAAATATC 58.487 37.037 0.00 0.00 0.00 1.63
432 763 6.370442 CGTGTGAAGGGAGTATTAATGAAACA 59.630 38.462 0.00 0.00 0.00 2.83
511 842 9.350357 CTTCAACCATTCAATCACTTTGATTAG 57.650 33.333 1.14 0.00 44.60 1.73
513 844 5.883661 ACCATTCAATCACTTTGATTAGCG 58.116 37.500 1.14 0.00 44.60 4.26
514 845 5.163622 ACCATTCAATCACTTTGATTAGCGG 60.164 40.000 1.14 3.57 44.60 5.52
519 850 3.410631 TCACTTTGATTAGCGGTTGGA 57.589 42.857 0.00 0.00 0.00 3.53
533 864 3.687698 GCGGTTGGACTGTTTGTACATAT 59.312 43.478 0.00 0.00 39.63 1.78
534 865 4.201783 GCGGTTGGACTGTTTGTACATATC 60.202 45.833 0.00 0.00 39.63 1.63
535 866 4.932799 CGGTTGGACTGTTTGTACATATCA 59.067 41.667 0.00 0.00 39.63 2.15
536 867 5.163893 CGGTTGGACTGTTTGTACATATCAC 60.164 44.000 0.00 0.00 39.63 3.06
583 915 4.537135 AGGAAGTGTCGAACATATGTGT 57.463 40.909 9.63 0.00 41.28 3.72
603 935 7.247456 TGTGTGTTATATAGTTCCACTTCCA 57.753 36.000 0.00 0.00 0.00 3.53
645 983 5.621193 ACACCAATTATATGCACTACTCCC 58.379 41.667 0.00 0.00 0.00 4.30
650 988 1.633774 ATATGCACTACTCCCTCCGG 58.366 55.000 0.00 0.00 0.00 5.14
651 989 1.113517 TATGCACTACTCCCTCCGGC 61.114 60.000 0.00 0.00 0.00 6.13
659 997 0.546598 ACTCCCTCCGGCCTAAATTG 59.453 55.000 0.00 0.00 0.00 2.32
660 998 0.179018 CTCCCTCCGGCCTAAATTGG 60.179 60.000 0.00 0.00 0.00 3.16
661 999 0.622154 TCCCTCCGGCCTAAATTGGA 60.622 55.000 0.00 0.00 0.00 3.53
662 1000 0.465642 CCCTCCGGCCTAAATTGGAC 60.466 60.000 0.00 0.00 0.00 4.02
663 1001 0.546598 CCTCCGGCCTAAATTGGACT 59.453 55.000 0.00 0.00 31.45 3.85
664 1002 1.064685 CCTCCGGCCTAAATTGGACTT 60.065 52.381 0.00 0.00 31.45 3.01
665 1003 2.171870 CCTCCGGCCTAAATTGGACTTA 59.828 50.000 0.00 0.00 31.45 2.24
666 1004 3.181443 CCTCCGGCCTAAATTGGACTTAT 60.181 47.826 0.00 0.00 31.45 1.73
667 1005 4.461198 CTCCGGCCTAAATTGGACTTATT 58.539 43.478 0.00 0.00 31.45 1.40
668 1006 5.455612 CCTCCGGCCTAAATTGGACTTATTA 60.456 44.000 0.00 0.00 31.45 0.98
669 1007 6.195600 TCCGGCCTAAATTGGACTTATTAT 57.804 37.500 0.00 0.00 31.45 1.28
670 1008 6.235664 TCCGGCCTAAATTGGACTTATTATC 58.764 40.000 0.00 0.00 31.45 1.75
671 1009 6.001460 CCGGCCTAAATTGGACTTATTATCA 58.999 40.000 0.00 0.00 31.45 2.15
672 1010 6.072673 CCGGCCTAAATTGGACTTATTATCAC 60.073 42.308 0.00 0.00 31.45 3.06
676 1014 9.289782 GCCTAAATTGGACTTATTATCACAGAT 57.710 33.333 0.00 0.00 0.00 2.90
736 1133 4.667262 CGAAAGTGAGTAGGAGTGATCTG 58.333 47.826 0.00 0.00 0.00 2.90
753 1150 0.685097 CTGGACCAAGAAAGGACGGA 59.315 55.000 0.00 0.00 0.00 4.69
920 1317 2.757868 CAGGGACAAAACAGAACAACCA 59.242 45.455 0.00 0.00 0.00 3.67
922 1319 3.194755 AGGGACAAAACAGAACAACCAAC 59.805 43.478 0.00 0.00 0.00 3.77
925 1322 2.235155 ACAAAACAGAACAACCAACCCC 59.765 45.455 0.00 0.00 0.00 4.95
926 1323 2.234908 CAAAACAGAACAACCAACCCCA 59.765 45.455 0.00 0.00 0.00 4.96
927 1324 1.480789 AACAGAACAACCAACCCCAC 58.519 50.000 0.00 0.00 0.00 4.61
928 1325 0.396556 ACAGAACAACCAACCCCACC 60.397 55.000 0.00 0.00 0.00 4.61
929 1326 1.112916 CAGAACAACCAACCCCACCC 61.113 60.000 0.00 0.00 0.00 4.61
1041 1439 3.465403 CTCCTCGTGGGCCTCCTG 61.465 72.222 4.53 0.00 34.39 3.86
1248 1646 2.650116 CCTGGTGGTGGTCTCCTCG 61.650 68.421 0.00 0.00 0.00 4.63
1790 2319 1.135333 CCTGGACGAGAGGAAGTAAGC 59.865 57.143 0.00 0.00 31.48 3.09
1791 2320 1.819288 CTGGACGAGAGGAAGTAAGCA 59.181 52.381 0.00 0.00 0.00 3.91
1792 2321 1.819288 TGGACGAGAGGAAGTAAGCAG 59.181 52.381 0.00 0.00 0.00 4.24
1809 2338 5.990120 AAGCAGCTCTTCACCAATTTTAT 57.010 34.783 0.00 0.00 0.00 1.40
1813 2342 7.486647 AGCAGCTCTTCACCAATTTTATTATG 58.513 34.615 0.00 0.00 0.00 1.90
1877 2935 2.824689 TGATTAGCTGGGCCATTTGA 57.175 45.000 6.72 0.00 0.00 2.69
1963 5906 3.289834 CCTTGTGCGTGCCTGCTT 61.290 61.111 0.00 0.00 35.36 3.91
1964 5907 2.050714 CTTGTGCGTGCCTGCTTG 60.051 61.111 0.00 0.00 35.36 4.01
2141 8824 7.214467 ACGCTCTTCATTTCTTTTATTTCCA 57.786 32.000 0.00 0.00 0.00 3.53
2207 8965 3.740128 ATCGCGTCACATCTGGGGC 62.740 63.158 5.77 0.00 0.00 5.80
2214 8972 1.077930 CACATCTGGGGCTGGAGTG 60.078 63.158 0.00 0.00 0.00 3.51
2329 9088 2.973945 ACTCACCTAACCTCAATTCGC 58.026 47.619 0.00 0.00 0.00 4.70
2467 9259 4.160252 CCACCAATTATCTGAAAACCCAGG 59.840 45.833 0.00 0.00 34.99 4.45
2470 9262 5.015817 ACCAATTATCTGAAAACCCAGGGTA 59.984 40.000 13.17 0.00 33.12 3.69
2478 9270 3.072476 TGAAAACCCAGGGTAGTCTTCAG 59.928 47.826 13.17 0.00 33.12 3.02
2485 9277 0.984995 GGGTAGTCTTCAGTTGGCCT 59.015 55.000 3.32 0.00 0.00 5.19
2530 9329 4.803426 GCCCTCGTGGAGCTCGTG 62.803 72.222 7.83 0.00 35.39 4.35
2531 9330 3.062466 CCCTCGTGGAGCTCGTGA 61.062 66.667 7.83 4.35 35.39 4.35
2533 9332 1.289066 CCTCGTGGAGCTCGTGAAA 59.711 57.895 7.83 0.00 34.57 2.69
2534 9333 0.734253 CCTCGTGGAGCTCGTGAAAG 60.734 60.000 7.83 1.42 34.57 2.62
2536 9335 1.664649 CGTGGAGCTCGTGAAAGCA 60.665 57.895 7.83 0.00 45.00 3.91
2537 9336 1.221466 CGTGGAGCTCGTGAAAGCAA 61.221 55.000 7.83 0.00 45.00 3.91
2538 9337 0.235926 GTGGAGCTCGTGAAAGCAAC 59.764 55.000 7.83 0.00 45.00 4.17
2539 9338 0.106708 TGGAGCTCGTGAAAGCAACT 59.893 50.000 7.83 0.00 45.00 3.16
2540 9339 0.514691 GGAGCTCGTGAAAGCAACTG 59.485 55.000 7.83 0.00 45.00 3.16
2541 9340 0.514691 GAGCTCGTGAAAGCAACTGG 59.485 55.000 0.00 0.00 45.00 4.00
2542 9341 1.081840 GCTCGTGAAAGCAACTGGC 60.082 57.895 0.00 0.00 42.05 4.85
2585 9384 4.437390 CCATGTCCGTGAAACTATTTCTGC 60.437 45.833 3.19 0.00 40.32 4.26
2620 9419 1.548081 CACAATCAAGTGCCATCCCA 58.452 50.000 0.00 0.00 32.04 4.37
2624 9423 3.202818 ACAATCAAGTGCCATCCCATCTA 59.797 43.478 0.00 0.00 0.00 1.98
2650 9449 4.129737 GAGCAGGCGGTAGCGACA 62.130 66.667 24.02 0.00 46.35 4.35
2660 9459 1.941294 CGGTAGCGACAGATCAGTACT 59.059 52.381 9.07 0.00 0.00 2.73
2689 9488 5.768662 CCTGATTGCCAGTAGAAATGATGAT 59.231 40.000 0.00 0.00 41.33 2.45
2697 9496 7.039853 TGCCAGTAGAAATGATGATTGTTGAAA 60.040 33.333 0.00 0.00 0.00 2.69
2704 9503 8.680001 AGAAATGATGATTGTTGAAATGATCGA 58.320 29.630 0.00 0.00 0.00 3.59
2705 9504 9.459640 GAAATGATGATTGTTGAAATGATCGAT 57.540 29.630 0.00 0.00 0.00 3.59
2706 9505 9.459640 AAATGATGATTGTTGAAATGATCGATC 57.540 29.630 18.72 18.72 0.00 3.69
2725 9524 4.093408 CGATCGTTGAAATGTTCAGGTGAT 59.907 41.667 7.03 0.00 41.38 3.06
2736 9535 1.144691 TCAGGTGATGGTGTTTCCCA 58.855 50.000 0.00 0.00 39.27 4.37
3213 10372 3.040763 GGCATCATCCTCGCGCTC 61.041 66.667 5.56 0.00 0.00 5.03
3262 10421 0.039074 CGTCCAGAACTTCGTGCTCT 60.039 55.000 0.00 0.00 0.00 4.09
3376 10535 0.459237 CAGGGTGTTCTAGAGCAGCG 60.459 60.000 25.95 13.82 40.25 5.18
3378 10537 1.811679 GGTGTTCTAGAGCAGCGCC 60.812 63.158 20.66 10.39 30.98 6.53
3379 10538 2.161486 GTGTTCTAGAGCAGCGCCG 61.161 63.158 9.83 0.00 0.00 6.46
3380 10539 2.182030 GTTCTAGAGCAGCGCCGT 59.818 61.111 2.29 0.00 0.00 5.68
3381 10540 2.161486 GTTCTAGAGCAGCGCCGTG 61.161 63.158 2.29 0.00 0.00 4.94
3431 10590 2.114616 TCCAGCATTTTGGTTTGGTGT 58.885 42.857 0.00 0.00 39.17 4.16
3435 10594 4.437239 CAGCATTTTGGTTTGGTGTTGTA 58.563 39.130 0.00 0.00 36.77 2.41
3551 10711 0.326264 GAGGAGCTGAAGAAAGGCCA 59.674 55.000 5.01 0.00 0.00 5.36
3565 10764 2.180017 GCCAAACCTGATGCTGCG 59.820 61.111 0.00 0.00 0.00 5.18
3576 10775 6.064846 ACCTGATGCTGCGATAAATTAAAG 57.935 37.500 0.00 0.00 0.00 1.85
3577 10776 5.590259 ACCTGATGCTGCGATAAATTAAAGT 59.410 36.000 0.00 0.00 0.00 2.66
3578 10777 6.095440 ACCTGATGCTGCGATAAATTAAAGTT 59.905 34.615 0.00 0.00 0.00 2.66
3579 10778 7.282224 ACCTGATGCTGCGATAAATTAAAGTTA 59.718 33.333 0.00 0.00 0.00 2.24
3580 10779 8.128582 CCTGATGCTGCGATAAATTAAAGTTAA 58.871 33.333 0.00 0.00 0.00 2.01
3628 10827 8.488651 TTTCATAAACGAAATAACTCTCCCTC 57.511 34.615 0.00 0.00 30.00 4.30
3643 10851 6.842676 ACTCTCCCTCTGTTGTAATTTTCTT 58.157 36.000 0.00 0.00 0.00 2.52
3651 10859 9.565213 CCTCTGTTGTAATTTTCTTGATTCATC 57.435 33.333 0.00 0.00 0.00 2.92
3669 10877 3.926527 TCATCTGTAACGATCACTTGTGC 59.073 43.478 0.00 0.00 0.00 4.57
3673 10881 1.389106 GTAACGATCACTTGTGCGGAC 59.611 52.381 0.00 0.00 0.00 4.79
3674 10882 0.249699 AACGATCACTTGTGCGGACA 60.250 50.000 5.33 5.33 0.00 4.02
3675 10883 0.667487 ACGATCACTTGTGCGGACAG 60.667 55.000 10.41 7.38 32.26 3.51
3676 10884 0.667487 CGATCACTTGTGCGGACAGT 60.667 55.000 10.41 8.04 32.26 3.55
3677 10885 1.512926 GATCACTTGTGCGGACAGTT 58.487 50.000 10.41 0.00 32.26 3.16
3678 10886 1.461127 GATCACTTGTGCGGACAGTTC 59.539 52.381 10.41 0.13 32.26 3.01
3679 10887 0.464036 TCACTTGTGCGGACAGTTCT 59.536 50.000 10.41 0.00 32.26 3.01
3680 10888 1.134521 TCACTTGTGCGGACAGTTCTT 60.135 47.619 10.41 0.00 32.26 2.52
3681 10889 1.003545 CACTTGTGCGGACAGTTCTTG 60.004 52.381 10.41 0.73 32.26 3.02
3682 10890 1.134521 ACTTGTGCGGACAGTTCTTGA 60.135 47.619 10.41 0.00 32.26 3.02
3683 10891 2.146342 CTTGTGCGGACAGTTCTTGAT 58.854 47.619 10.41 0.00 32.26 2.57
3684 10892 2.254546 TGTGCGGACAGTTCTTGATT 57.745 45.000 5.33 0.00 0.00 2.57
3685 10893 3.394674 TGTGCGGACAGTTCTTGATTA 57.605 42.857 5.33 0.00 0.00 1.75
3686 10894 3.937814 TGTGCGGACAGTTCTTGATTAT 58.062 40.909 5.33 0.00 0.00 1.28
3687 10895 5.079689 TGTGCGGACAGTTCTTGATTATA 57.920 39.130 5.33 0.00 0.00 0.98
3688 10896 4.868171 TGTGCGGACAGTTCTTGATTATAC 59.132 41.667 5.33 0.00 0.00 1.47
3689 10897 4.026804 GTGCGGACAGTTCTTGATTATACG 60.027 45.833 0.63 0.00 0.00 3.06
3690 10898 4.142337 TGCGGACAGTTCTTGATTATACGA 60.142 41.667 0.00 0.00 0.00 3.43
3691 10899 4.802039 GCGGACAGTTCTTGATTATACGAA 59.198 41.667 0.00 0.00 0.00 3.85
3714 10930 2.557869 ACTTGCCTACAACCCTATGGA 58.442 47.619 0.00 0.00 34.81 3.41
3717 10933 4.202631 ACTTGCCTACAACCCTATGGAAAA 60.203 41.667 0.00 0.00 34.81 2.29
3718 10934 3.963129 TGCCTACAACCCTATGGAAAAG 58.037 45.455 0.00 0.00 34.81 2.27
3724 10940 0.988832 ACCCTATGGAAAAGGACGCA 59.011 50.000 0.00 0.00 36.08 5.24
3725 10941 1.564348 ACCCTATGGAAAAGGACGCAT 59.436 47.619 0.00 0.00 36.08 4.73
3728 10947 3.545703 CCTATGGAAAAGGACGCATTCT 58.454 45.455 0.00 0.00 36.08 2.40
3745 10964 6.642540 ACGCATTCTTCTTCATTTTTCCTTTC 59.357 34.615 0.00 0.00 0.00 2.62
3749 10968 6.655078 TCTTCTTCATTTTTCCTTTCCCTG 57.345 37.500 0.00 0.00 0.00 4.45
3754 10976 8.719645 TCTTCATTTTTCCTTTCCCTGAAATA 57.280 30.769 0.00 0.00 30.85 1.40
3764 10988 5.104109 CCTTTCCCTGAAATACCATACTGGA 60.104 44.000 0.00 0.00 34.38 3.86
3765 10989 5.630415 TTCCCTGAAATACCATACTGGAG 57.370 43.478 0.00 0.00 40.96 3.86
3776 11000 4.770795 ACCATACTGGAGTATTTCTGCAC 58.229 43.478 0.00 0.00 40.96 4.57
3844 11068 3.829948 CATTGGTTGTGATGCTTCAGTC 58.170 45.455 1.91 0.00 30.85 3.51
3872 11096 6.483640 CACTAACTCTACCTTTTTGCTTCTGT 59.516 38.462 0.00 0.00 0.00 3.41
3873 11097 5.757850 AACTCTACCTTTTTGCTTCTGTG 57.242 39.130 0.00 0.00 0.00 3.66
3874 11098 3.565902 ACTCTACCTTTTTGCTTCTGTGC 59.434 43.478 0.00 0.00 0.00 4.57
3875 11099 3.817647 CTCTACCTTTTTGCTTCTGTGCT 59.182 43.478 0.00 0.00 0.00 4.40
3877 11101 3.169355 ACCTTTTTGCTTCTGTGCTTG 57.831 42.857 0.00 0.00 0.00 4.01
3878 11102 2.497273 ACCTTTTTGCTTCTGTGCTTGT 59.503 40.909 0.00 0.00 0.00 3.16
3879 11103 3.118542 CCTTTTTGCTTCTGTGCTTGTC 58.881 45.455 0.00 0.00 0.00 3.18
4010 11235 5.959618 AAGTTAAGTGCCAAATCTACCAC 57.040 39.130 0.00 0.00 0.00 4.16
4018 11243 2.817844 GCCAAATCTACCACTCGGTTTT 59.182 45.455 0.00 0.00 46.31 2.43
4019 11244 3.254903 GCCAAATCTACCACTCGGTTTTT 59.745 43.478 0.00 0.00 46.31 1.94
4056 11282 9.288576 TGTCTAAAATGGATGAATTATGCTAGG 57.711 33.333 0.00 0.00 0.00 3.02
4057 11283 9.507329 GTCTAAAATGGATGAATTATGCTAGGA 57.493 33.333 0.00 0.00 0.00 2.94
4058 11284 9.507329 TCTAAAATGGATGAATTATGCTAGGAC 57.493 33.333 0.00 0.00 0.00 3.85
4059 11285 6.808008 AAATGGATGAATTATGCTAGGACG 57.192 37.500 0.00 0.00 0.00 4.79
4060 11286 3.664107 TGGATGAATTATGCTAGGACGC 58.336 45.455 0.00 0.00 0.00 5.19
4061 11287 3.003480 GGATGAATTATGCTAGGACGCC 58.997 50.000 0.00 0.00 0.00 5.68
4062 11288 2.148916 TGAATTATGCTAGGACGCCG 57.851 50.000 0.00 0.00 0.00 6.46
4063 11289 1.684450 TGAATTATGCTAGGACGCCGA 59.316 47.619 0.00 0.00 0.00 5.54
4064 11290 2.299013 TGAATTATGCTAGGACGCCGAT 59.701 45.455 0.00 0.00 0.00 4.18
4065 11291 3.508402 TGAATTATGCTAGGACGCCGATA 59.492 43.478 0.00 0.00 0.00 2.92
4066 11292 4.021807 TGAATTATGCTAGGACGCCGATAA 60.022 41.667 0.00 0.00 0.00 1.75
4067 11293 3.293311 TTATGCTAGGACGCCGATAAC 57.707 47.619 0.00 0.00 0.00 1.89
4068 11294 1.329256 ATGCTAGGACGCCGATAACT 58.671 50.000 0.00 0.00 0.00 2.24
4069 11295 0.384309 TGCTAGGACGCCGATAACTG 59.616 55.000 0.00 0.00 0.00 3.16
4070 11296 0.940047 GCTAGGACGCCGATAACTGC 60.940 60.000 0.00 0.00 0.00 4.40
4071 11297 0.318784 CTAGGACGCCGATAACTGCC 60.319 60.000 0.00 0.00 0.00 4.85
4072 11298 1.038681 TAGGACGCCGATAACTGCCA 61.039 55.000 0.00 0.00 0.00 4.92
4073 11299 2.171725 GGACGCCGATAACTGCCAC 61.172 63.158 0.00 0.00 0.00 5.01
4074 11300 1.447140 GACGCCGATAACTGCCACA 60.447 57.895 0.00 0.00 0.00 4.17
4075 11301 1.693083 GACGCCGATAACTGCCACAC 61.693 60.000 0.00 0.00 0.00 3.82
4076 11302 2.798501 CGCCGATAACTGCCACACG 61.799 63.158 0.00 0.00 0.00 4.49
4077 11303 1.740296 GCCGATAACTGCCACACGT 60.740 57.895 0.00 0.00 0.00 4.49
4078 11304 1.966493 GCCGATAACTGCCACACGTG 61.966 60.000 15.48 15.48 0.00 4.49
4079 11305 0.669318 CCGATAACTGCCACACGTGT 60.669 55.000 17.22 17.22 0.00 4.49
4080 11306 0.438445 CGATAACTGCCACACGTGTG 59.562 55.000 36.13 36.13 45.23 3.82
4088 11314 2.280254 CACACGTGTGGGCGGTAA 60.280 61.111 35.65 0.00 42.10 2.85
4089 11315 2.029964 ACACGTGTGGGCGGTAAG 59.970 61.111 22.71 0.00 35.98 2.34
4090 11316 2.740826 CACGTGTGGGCGGTAAGG 60.741 66.667 7.58 0.00 35.98 2.69
4091 11317 3.236233 ACGTGTGGGCGGTAAGGT 61.236 61.111 0.00 0.00 35.98 3.50
4092 11318 2.031465 CGTGTGGGCGGTAAGGTT 59.969 61.111 0.00 0.00 0.00 3.50
4093 11319 1.598685 CGTGTGGGCGGTAAGGTTT 60.599 57.895 0.00 0.00 0.00 3.27
4094 11320 0.320596 CGTGTGGGCGGTAAGGTTTA 60.321 55.000 0.00 0.00 0.00 2.01
4095 11321 1.445871 GTGTGGGCGGTAAGGTTTAG 58.554 55.000 0.00 0.00 0.00 1.85
4096 11322 1.058284 TGTGGGCGGTAAGGTTTAGT 58.942 50.000 0.00 0.00 0.00 2.24
4097 11323 1.270947 TGTGGGCGGTAAGGTTTAGTG 60.271 52.381 0.00 0.00 0.00 2.74
4098 11324 0.321830 TGGGCGGTAAGGTTTAGTGC 60.322 55.000 0.00 0.00 0.00 4.40
4099 11325 1.028330 GGGCGGTAAGGTTTAGTGCC 61.028 60.000 0.00 0.00 40.25 5.01
4100 11326 1.363885 GGCGGTAAGGTTTAGTGCCG 61.364 60.000 0.00 0.00 41.79 5.69
4101 11327 2.084013 CGGTAAGGTTTAGTGCCGC 58.916 57.895 0.00 0.00 32.73 6.53
4102 11328 0.671163 CGGTAAGGTTTAGTGCCGCA 60.671 55.000 0.00 0.00 32.73 5.69
4103 11329 0.800631 GGTAAGGTTTAGTGCCGCAC 59.199 55.000 16.04 16.04 34.10 5.34
4104 11330 0.441145 GTAAGGTTTAGTGCCGCACG 59.559 55.000 17.64 0.00 39.64 5.34
4105 11331 0.317799 TAAGGTTTAGTGCCGCACGA 59.682 50.000 17.64 10.18 39.64 4.35
4106 11332 0.321298 AAGGTTTAGTGCCGCACGAT 60.321 50.000 17.64 4.18 39.64 3.73
4107 11333 0.321298 AGGTTTAGTGCCGCACGATT 60.321 50.000 17.64 3.44 39.64 3.34
4108 11334 0.096454 GGTTTAGTGCCGCACGATTC 59.904 55.000 17.64 9.89 39.64 2.52
4109 11335 0.247145 GTTTAGTGCCGCACGATTCG 60.247 55.000 17.64 4.14 39.64 3.34
4110 11336 0.668096 TTTAGTGCCGCACGATTCGT 60.668 50.000 17.64 5.75 42.36 3.85
4111 11337 0.668096 TTAGTGCCGCACGATTCGTT 60.668 50.000 17.64 1.20 38.32 3.85
4112 11338 1.074319 TAGTGCCGCACGATTCGTTC 61.074 55.000 17.64 3.57 38.32 3.95
4121 11347 2.981969 CGATTCGTTCGGCAACAAC 58.018 52.632 0.00 0.00 44.28 3.32
4122 11348 0.233590 CGATTCGTTCGGCAACAACA 59.766 50.000 0.00 0.00 44.28 3.33
4123 11349 1.670326 GATTCGTTCGGCAACAACAC 58.330 50.000 0.00 0.00 32.14 3.32
4124 11350 1.263217 GATTCGTTCGGCAACAACACT 59.737 47.619 0.00 0.00 32.14 3.55
4125 11351 1.088306 TTCGTTCGGCAACAACACTT 58.912 45.000 0.00 0.00 32.14 3.16
4126 11352 0.375454 TCGTTCGGCAACAACACTTG 59.625 50.000 0.00 0.00 32.14 3.16
4127 11353 1.199852 CGTTCGGCAACAACACTTGC 61.200 55.000 0.00 0.00 45.01 4.01
4131 11357 4.017092 GCAACAACACTTGCCAGC 57.983 55.556 0.00 0.00 40.68 4.85
4132 11358 1.592400 GCAACAACACTTGCCAGCC 60.592 57.895 0.00 0.00 40.68 4.85
4133 11359 1.067916 CAACAACACTTGCCAGCCC 59.932 57.895 0.00 0.00 0.00 5.19
4134 11360 2.489275 AACAACACTTGCCAGCCCG 61.489 57.895 0.00 0.00 0.00 6.13
4135 11361 4.347453 CAACACTTGCCAGCCCGC 62.347 66.667 0.00 0.00 0.00 6.13
4136 11362 4.892965 AACACTTGCCAGCCCGCA 62.893 61.111 0.00 0.00 36.85 5.69
4176 11402 4.812476 CCAGCGCCCGAACGATCA 62.812 66.667 2.29 0.00 34.06 2.92
4177 11403 3.257561 CAGCGCCCGAACGATCAG 61.258 66.667 2.29 0.00 34.06 2.90
4178 11404 4.514577 AGCGCCCGAACGATCAGG 62.515 66.667 2.29 0.00 34.06 3.86
4181 11407 2.892425 GCCCGAACGATCAGGCAG 60.892 66.667 14.51 0.00 46.60 4.85
4182 11408 2.892425 CCCGAACGATCAGGCAGC 60.892 66.667 0.00 0.00 0.00 5.25
4183 11409 2.892425 CCGAACGATCAGGCAGCC 60.892 66.667 1.84 1.84 0.00 4.85
4184 11410 2.125552 CGAACGATCAGGCAGCCA 60.126 61.111 15.80 0.00 0.00 4.75
4185 11411 2.456119 CGAACGATCAGGCAGCCAC 61.456 63.158 15.80 0.90 0.00 5.01
4186 11412 1.375908 GAACGATCAGGCAGCCACA 60.376 57.895 15.80 0.00 0.00 4.17
4187 11413 0.745845 GAACGATCAGGCAGCCACAT 60.746 55.000 15.80 4.25 0.00 3.21
4188 11414 0.541392 AACGATCAGGCAGCCACATA 59.459 50.000 15.80 0.00 0.00 2.29
4189 11415 0.761187 ACGATCAGGCAGCCACATAT 59.239 50.000 15.80 0.41 0.00 1.78
4190 11416 1.154197 CGATCAGGCAGCCACATATG 58.846 55.000 15.80 2.21 0.00 1.78
4191 11417 1.541889 CGATCAGGCAGCCACATATGT 60.542 52.381 15.80 1.41 0.00 2.29
4192 11418 1.878088 GATCAGGCAGCCACATATGTG 59.122 52.381 26.02 26.02 45.23 3.21
4200 11426 3.110139 CACATATGTGGCCCGCAC 58.890 61.111 25.41 0.00 42.10 5.34
4201 11427 1.748500 CACATATGTGGCCCGCACA 60.749 57.895 25.41 0.00 42.10 4.57
4202 11428 1.748879 ACATATGTGGCCCGCACAC 60.749 57.895 7.78 0.00 39.26 3.82
4203 11429 2.124320 ATATGTGGCCCGCACACC 60.124 61.111 0.00 0.00 38.05 4.16
4204 11430 2.977718 ATATGTGGCCCGCACACCA 61.978 57.895 0.00 0.00 38.05 4.17
4230 11456 4.289312 CAGCAATTGCCAAAGCCC 57.711 55.556 26.45 0.00 43.38 5.19
4231 11457 1.738830 CAGCAATTGCCAAAGCCCG 60.739 57.895 26.45 1.99 43.38 6.13
4232 11458 3.120385 GCAATTGCCAAAGCCCGC 61.120 61.111 20.06 0.00 38.69 6.13
4233 11459 2.343018 CAATTGCCAAAGCCCGCA 59.657 55.556 0.00 0.00 38.69 5.69
4234 11460 2.028733 CAATTGCCAAAGCCCGCAC 61.029 57.895 0.00 0.00 38.69 5.34
4235 11461 3.572196 AATTGCCAAAGCCCGCACG 62.572 57.895 0.00 0.00 38.69 5.34
4238 11464 4.999939 GCCAAAGCCCGCACGTTG 63.000 66.667 0.00 0.00 0.00 4.10
4239 11465 3.591835 CCAAAGCCCGCACGTTGT 61.592 61.111 0.00 0.00 0.00 3.32
4240 11466 2.051345 CAAAGCCCGCACGTTGTC 60.051 61.111 0.00 0.00 0.00 3.18
4241 11467 2.515057 AAAGCCCGCACGTTGTCA 60.515 55.556 0.00 0.00 0.00 3.58
4242 11468 2.115911 AAAGCCCGCACGTTGTCAA 61.116 52.632 0.00 0.00 0.00 3.18
4243 11469 2.331019 AAAGCCCGCACGTTGTCAAC 62.331 55.000 5.58 5.58 0.00 3.18
4244 11470 3.276846 GCCCGCACGTTGTCAACT 61.277 61.111 13.67 0.00 0.00 3.16
4245 11471 2.631428 CCCGCACGTTGTCAACTG 59.369 61.111 13.67 11.27 0.00 3.16
4246 11472 2.052237 CCGCACGTTGTCAACTGC 60.052 61.111 20.90 20.90 34.43 4.40
4247 11473 2.052237 CGCACGTTGTCAACTGCC 60.052 61.111 23.00 12.64 34.33 4.85
4248 11474 2.331451 GCACGTTGTCAACTGCCC 59.669 61.111 20.49 3.87 32.83 5.36
4249 11475 3.030652 CACGTTGTCAACTGCCCC 58.969 61.111 13.67 0.00 0.00 5.80
4250 11476 1.821759 CACGTTGTCAACTGCCCCA 60.822 57.895 13.67 0.00 0.00 4.96
4251 11477 1.077357 ACGTTGTCAACTGCCCCAA 60.077 52.632 13.67 0.00 0.00 4.12
4252 11478 0.681564 ACGTTGTCAACTGCCCCAAA 60.682 50.000 13.67 0.00 0.00 3.28
4253 11479 0.457851 CGTTGTCAACTGCCCCAAAA 59.542 50.000 13.67 0.00 0.00 2.44
4254 11480 1.134965 CGTTGTCAACTGCCCCAAAAA 60.135 47.619 13.67 0.00 0.00 1.94
4255 11481 2.276201 GTTGTCAACTGCCCCAAAAAC 58.724 47.619 8.53 0.00 0.00 2.43
4256 11482 0.457851 TGTCAACTGCCCCAAAAACG 59.542 50.000 0.00 0.00 0.00 3.60
4257 11483 0.874175 GTCAACTGCCCCAAAAACGC 60.874 55.000 0.00 0.00 0.00 4.84
4258 11484 1.594021 CAACTGCCCCAAAAACGCC 60.594 57.895 0.00 0.00 0.00 5.68
4259 11485 1.760480 AACTGCCCCAAAAACGCCT 60.760 52.632 0.00 0.00 0.00 5.52
4260 11486 2.026945 AACTGCCCCAAAAACGCCTG 62.027 55.000 0.00 0.00 0.00 4.85
4261 11487 3.864160 CTGCCCCAAAAACGCCTGC 62.864 63.158 0.00 0.00 0.00 4.85
4262 11488 4.680237 GCCCCAAAAACGCCTGCC 62.680 66.667 0.00 0.00 0.00 4.85
4263 11489 4.002506 CCCCAAAAACGCCTGCCC 62.003 66.667 0.00 0.00 0.00 5.36
4264 11490 4.356442 CCCAAAAACGCCTGCCCG 62.356 66.667 0.00 0.00 0.00 6.13
4266 11492 4.277593 CAAAAACGCCTGCCCGCA 62.278 61.111 0.00 0.00 0.00 5.69
4267 11493 3.532155 AAAAACGCCTGCCCGCAA 61.532 55.556 0.00 0.00 0.00 4.85
4268 11494 3.082579 AAAAACGCCTGCCCGCAAA 62.083 52.632 0.00 0.00 0.00 3.68
4269 11495 2.579684 AAAAACGCCTGCCCGCAAAA 62.580 50.000 0.00 0.00 0.00 2.44
4270 11496 3.783478 AAACGCCTGCCCGCAAAAC 62.783 57.895 0.00 0.00 0.00 2.43
4272 11498 4.404654 CGCCTGCCCGCAAAACTC 62.405 66.667 0.00 0.00 0.00 3.01
4273 11499 4.056125 GCCTGCCCGCAAAACTCC 62.056 66.667 0.00 0.00 0.00 3.85
4274 11500 3.373565 CCTGCCCGCAAAACTCCC 61.374 66.667 0.00 0.00 0.00 4.30
4275 11501 3.737172 CTGCCCGCAAAACTCCCG 61.737 66.667 0.00 0.00 0.00 5.14
4276 11502 4.572571 TGCCCGCAAAACTCCCGT 62.573 61.111 0.00 0.00 0.00 5.28
4277 11503 2.358984 GCCCGCAAAACTCCCGTA 60.359 61.111 0.00 0.00 0.00 4.02
4278 11504 1.967494 GCCCGCAAAACTCCCGTAA 60.967 57.895 0.00 0.00 0.00 3.18
4279 11505 1.871077 CCCGCAAAACTCCCGTAAC 59.129 57.895 0.00 0.00 0.00 2.50
4280 11506 1.579964 CCCGCAAAACTCCCGTAACC 61.580 60.000 0.00 0.00 0.00 2.85
4281 11507 1.579964 CCGCAAAACTCCCGTAACCC 61.580 60.000 0.00 0.00 0.00 4.11
4282 11508 1.579964 CGCAAAACTCCCGTAACCCC 61.580 60.000 0.00 0.00 0.00 4.95
4283 11509 0.251033 GCAAAACTCCCGTAACCCCT 60.251 55.000 0.00 0.00 0.00 4.79
4284 11510 1.817357 CAAAACTCCCGTAACCCCTC 58.183 55.000 0.00 0.00 0.00 4.30
4285 11511 0.694771 AAAACTCCCGTAACCCCTCC 59.305 55.000 0.00 0.00 0.00 4.30
4286 11512 0.178882 AAACTCCCGTAACCCCTCCT 60.179 55.000 0.00 0.00 0.00 3.69
4287 11513 0.616964 AACTCCCGTAACCCCTCCTC 60.617 60.000 0.00 0.00 0.00 3.71
4288 11514 1.761271 CTCCCGTAACCCCTCCTCC 60.761 68.421 0.00 0.00 0.00 4.30
4289 11515 2.039951 CCCGTAACCCCTCCTCCA 59.960 66.667 0.00 0.00 0.00 3.86
4290 11516 1.614226 CCCGTAACCCCTCCTCCAA 60.614 63.158 0.00 0.00 0.00 3.53
4291 11517 1.600638 CCGTAACCCCTCCTCCAAC 59.399 63.158 0.00 0.00 0.00 3.77
4292 11518 0.908180 CCGTAACCCCTCCTCCAACT 60.908 60.000 0.00 0.00 0.00 3.16
4293 11519 0.535797 CGTAACCCCTCCTCCAACTC 59.464 60.000 0.00 0.00 0.00 3.01
4294 11520 0.910338 GTAACCCCTCCTCCAACTCC 59.090 60.000 0.00 0.00 0.00 3.85
4295 11521 0.797579 TAACCCCTCCTCCAACTCCT 59.202 55.000 0.00 0.00 0.00 3.69
4296 11522 0.103876 AACCCCTCCTCCAACTCCTT 60.104 55.000 0.00 0.00 0.00 3.36
4297 11523 0.547954 ACCCCTCCTCCAACTCCTTC 60.548 60.000 0.00 0.00 0.00 3.46
4298 11524 1.617947 CCCCTCCTCCAACTCCTTCG 61.618 65.000 0.00 0.00 0.00 3.79
4299 11525 0.905337 CCCTCCTCCAACTCCTTCGT 60.905 60.000 0.00 0.00 0.00 3.85
4300 11526 0.533032 CCTCCTCCAACTCCTTCGTC 59.467 60.000 0.00 0.00 0.00 4.20
4301 11527 1.551452 CTCCTCCAACTCCTTCGTCT 58.449 55.000 0.00 0.00 0.00 4.18
4302 11528 2.620886 CCTCCTCCAACTCCTTCGTCTA 60.621 54.545 0.00 0.00 0.00 2.59
4303 11529 2.424246 CTCCTCCAACTCCTTCGTCTAC 59.576 54.545 0.00 0.00 0.00 2.59
4304 11530 1.477295 CCTCCAACTCCTTCGTCTACC 59.523 57.143 0.00 0.00 0.00 3.18
4305 11531 2.448453 CTCCAACTCCTTCGTCTACCT 58.552 52.381 0.00 0.00 0.00 3.08
4306 11532 2.424246 CTCCAACTCCTTCGTCTACCTC 59.576 54.545 0.00 0.00 0.00 3.85
4307 11533 2.041350 TCCAACTCCTTCGTCTACCTCT 59.959 50.000 0.00 0.00 0.00 3.69
4308 11534 2.164624 CCAACTCCTTCGTCTACCTCTG 59.835 54.545 0.00 0.00 0.00 3.35
4309 11535 1.465794 ACTCCTTCGTCTACCTCTGC 58.534 55.000 0.00 0.00 0.00 4.26
4310 11536 0.741915 CTCCTTCGTCTACCTCTGCC 59.258 60.000 0.00 0.00 0.00 4.85
4311 11537 0.683504 TCCTTCGTCTACCTCTGCCC 60.684 60.000 0.00 0.00 0.00 5.36
4312 11538 1.677637 CCTTCGTCTACCTCTGCCCC 61.678 65.000 0.00 0.00 0.00 5.80
4313 11539 0.684805 CTTCGTCTACCTCTGCCCCT 60.685 60.000 0.00 0.00 0.00 4.79
4314 11540 0.970937 TTCGTCTACCTCTGCCCCTG 60.971 60.000 0.00 0.00 0.00 4.45
4315 11541 2.904131 GTCTACCTCTGCCCCTGC 59.096 66.667 0.00 0.00 38.26 4.85
4316 11542 1.687493 GTCTACCTCTGCCCCTGCT 60.687 63.158 0.00 0.00 38.71 4.24
4317 11543 1.381872 TCTACCTCTGCCCCTGCTC 60.382 63.158 0.00 0.00 38.71 4.26
4318 11544 2.759973 TACCTCTGCCCCTGCTCG 60.760 66.667 0.00 0.00 38.71 5.03
4319 11545 3.602075 TACCTCTGCCCCTGCTCGT 62.602 63.158 0.00 0.00 38.71 4.18
4320 11546 4.154347 CCTCTGCCCCTGCTCGTC 62.154 72.222 0.00 0.00 38.71 4.20
4321 11547 3.073735 CTCTGCCCCTGCTCGTCT 61.074 66.667 0.00 0.00 38.71 4.18
4322 11548 2.604686 TCTGCCCCTGCTCGTCTT 60.605 61.111 0.00 0.00 38.71 3.01
4323 11549 2.435586 CTGCCCCTGCTCGTCTTG 60.436 66.667 0.00 0.00 38.71 3.02
4324 11550 3.241530 TGCCCCTGCTCGTCTTGT 61.242 61.111 0.00 0.00 38.71 3.16
4325 11551 2.032681 GCCCCTGCTCGTCTTGTT 59.967 61.111 0.00 0.00 33.53 2.83
4326 11552 2.035442 GCCCCTGCTCGTCTTGTTC 61.035 63.158 0.00 0.00 33.53 3.18
4327 11553 1.371183 CCCCTGCTCGTCTTGTTCA 59.629 57.895 0.00 0.00 0.00 3.18
4328 11554 0.951040 CCCCTGCTCGTCTTGTTCAC 60.951 60.000 0.00 0.00 0.00 3.18
4329 11555 0.951040 CCCTGCTCGTCTTGTTCACC 60.951 60.000 0.00 0.00 0.00 4.02
4330 11556 0.034059 CCTGCTCGTCTTGTTCACCT 59.966 55.000 0.00 0.00 0.00 4.00
4331 11557 1.423395 CTGCTCGTCTTGTTCACCTC 58.577 55.000 0.00 0.00 0.00 3.85
4332 11558 0.033504 TGCTCGTCTTGTTCACCTCC 59.966 55.000 0.00 0.00 0.00 4.30
4333 11559 1.009389 GCTCGTCTTGTTCACCTCCG 61.009 60.000 0.00 0.00 0.00 4.63
4334 11560 1.006571 TCGTCTTGTTCACCTCCGC 60.007 57.895 0.00 0.00 0.00 5.54
4335 11561 2.027625 CGTCTTGTTCACCTCCGCC 61.028 63.158 0.00 0.00 0.00 6.13
4336 11562 2.027625 GTCTTGTTCACCTCCGCCG 61.028 63.158 0.00 0.00 0.00 6.46
4337 11563 2.204461 TCTTGTTCACCTCCGCCGA 61.204 57.895 0.00 0.00 0.00 5.54
4338 11564 1.079127 CTTGTTCACCTCCGCCGAT 60.079 57.895 0.00 0.00 0.00 4.18
4339 11565 0.174845 CTTGTTCACCTCCGCCGATA 59.825 55.000 0.00 0.00 0.00 2.92
4340 11566 0.828022 TTGTTCACCTCCGCCGATAT 59.172 50.000 0.00 0.00 0.00 1.63
4341 11567 0.104120 TGTTCACCTCCGCCGATATG 59.896 55.000 0.00 0.00 0.00 1.78
4342 11568 1.069090 TTCACCTCCGCCGATATGC 59.931 57.895 0.00 0.00 0.00 3.14
4343 11569 1.681486 TTCACCTCCGCCGATATGCA 61.681 55.000 0.00 0.00 0.00 3.96
4344 11570 1.956170 CACCTCCGCCGATATGCAC 60.956 63.158 0.00 0.00 0.00 4.57
4345 11571 2.357517 CCTCCGCCGATATGCACC 60.358 66.667 0.00 0.00 0.00 5.01
4346 11572 2.357517 CTCCGCCGATATGCACCC 60.358 66.667 0.00 0.00 0.00 4.61
4347 11573 3.157949 TCCGCCGATATGCACCCA 61.158 61.111 0.00 0.00 0.00 4.51
4348 11574 2.203139 CCGCCGATATGCACCCAA 60.203 61.111 0.00 0.00 0.00 4.12
4349 11575 1.821759 CCGCCGATATGCACCCAAA 60.822 57.895 0.00 0.00 0.00 3.28
4350 11576 1.172180 CCGCCGATATGCACCCAAAT 61.172 55.000 0.00 0.00 0.00 2.32
4351 11577 0.238289 CGCCGATATGCACCCAAATC 59.762 55.000 0.00 0.00 0.00 2.17
4352 11578 0.238289 GCCGATATGCACCCAAATCG 59.762 55.000 0.00 0.00 40.60 3.34
4353 11579 0.238289 CCGATATGCACCCAAATCGC 59.762 55.000 10.14 0.00 39.81 4.58
4354 11580 0.238289 CGATATGCACCCAAATCGCC 59.762 55.000 0.00 0.00 35.36 5.54
4355 11581 1.317613 GATATGCACCCAAATCGCCA 58.682 50.000 0.00 0.00 0.00 5.69
4356 11582 1.888512 GATATGCACCCAAATCGCCAT 59.111 47.619 0.00 0.00 0.00 4.40
4357 11583 1.031235 TATGCACCCAAATCGCCATG 58.969 50.000 0.00 0.00 0.00 3.66
4358 11584 1.678598 ATGCACCCAAATCGCCATGG 61.679 55.000 7.63 7.63 36.42 3.66
4359 11585 2.495866 CACCCAAATCGCCATGGC 59.504 61.111 27.67 27.67 35.28 4.40
4360 11586 2.037049 ACCCAAATCGCCATGGCA 59.963 55.556 34.93 22.41 42.06 4.92
4361 11587 1.608918 ACCCAAATCGCCATGGCAA 60.609 52.632 34.93 20.39 42.06 4.52
4362 11588 1.153588 CCCAAATCGCCATGGCAAC 60.154 57.895 34.93 7.70 42.06 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.686944 GCCTATGATGACTTGTTCCATGGA 60.687 45.833 11.44 11.44 0.00 3.41
1 2 3.567164 GCCTATGATGACTTGTTCCATGG 59.433 47.826 4.97 4.97 0.00 3.66
2 3 3.249320 CGCCTATGATGACTTGTTCCATG 59.751 47.826 0.00 0.00 0.00 3.66
3 4 3.118261 ACGCCTATGATGACTTGTTCCAT 60.118 43.478 0.00 0.00 0.00 3.41
4 5 2.236146 ACGCCTATGATGACTTGTTCCA 59.764 45.455 0.00 0.00 0.00 3.53
5 6 2.866762 GACGCCTATGATGACTTGTTCC 59.133 50.000 0.00 0.00 0.00 3.62
6 7 3.786635 AGACGCCTATGATGACTTGTTC 58.213 45.455 0.00 0.00 0.00 3.18
7 8 3.735208 CGAGACGCCTATGATGACTTGTT 60.735 47.826 0.00 0.00 0.00 2.83
8 9 2.223595 CGAGACGCCTATGATGACTTGT 60.224 50.000 0.00 0.00 0.00 3.16
9 10 2.223595 ACGAGACGCCTATGATGACTTG 60.224 50.000 0.00 0.00 0.00 3.16
10 11 2.025155 ACGAGACGCCTATGATGACTT 58.975 47.619 0.00 0.00 0.00 3.01
11 12 1.681538 ACGAGACGCCTATGATGACT 58.318 50.000 0.00 0.00 0.00 3.41
12 13 3.620929 TTACGAGACGCCTATGATGAC 57.379 47.619 0.00 0.00 0.00 3.06
13 14 4.848562 AATTACGAGACGCCTATGATGA 57.151 40.909 0.00 0.00 0.00 2.92
14 15 6.379386 TCTAAATTACGAGACGCCTATGATG 58.621 40.000 0.00 0.00 0.00 3.07
15 16 6.570672 TCTAAATTACGAGACGCCTATGAT 57.429 37.500 0.00 0.00 0.00 2.45
16 17 6.261603 TCTTCTAAATTACGAGACGCCTATGA 59.738 38.462 0.00 0.00 0.00 2.15
17 18 6.436261 TCTTCTAAATTACGAGACGCCTATG 58.564 40.000 0.00 0.00 0.00 2.23
18 19 6.630444 TCTTCTAAATTACGAGACGCCTAT 57.370 37.500 0.00 0.00 0.00 2.57
19 20 6.261118 GTTCTTCTAAATTACGAGACGCCTA 58.739 40.000 0.00 0.00 0.00 3.93
20 21 4.978083 TCTTCTAAATTACGAGACGCCT 57.022 40.909 0.00 0.00 0.00 5.52
21 22 4.027864 CGTTCTTCTAAATTACGAGACGCC 60.028 45.833 0.00 0.00 34.36 5.68
22 23 4.556523 ACGTTCTTCTAAATTACGAGACGC 59.443 41.667 0.00 0.00 36.21 5.19
23 24 6.020372 AGACGTTCTTCTAAATTACGAGACG 58.980 40.000 0.00 0.00 36.21 4.18
24 25 7.793907 AAGACGTTCTTCTAAATTACGAGAC 57.206 36.000 0.00 0.00 28.99 3.36
38 39 4.684703 CGTTCAATGGTAGAAGACGTTCTT 59.315 41.667 0.00 0.00 40.35 2.52
39 40 4.235360 CGTTCAATGGTAGAAGACGTTCT 58.765 43.478 0.00 0.00 45.48 3.01
49 50 4.091945 CCGATGATATGCGTTCAATGGTAG 59.908 45.833 0.00 0.00 0.00 3.18
51 52 2.807967 CCGATGATATGCGTTCAATGGT 59.192 45.455 0.00 0.00 0.00 3.55
52 53 3.066380 TCCGATGATATGCGTTCAATGG 58.934 45.455 0.00 0.00 0.00 3.16
55 56 4.213270 GGATTTCCGATGATATGCGTTCAA 59.787 41.667 0.00 0.00 0.00 2.69
64 65 9.231297 GGATTTATTTCAGGATTTCCGATGATA 57.769 33.333 0.00 0.00 42.08 2.15
68 69 7.779798 TCTTGGATTTATTTCAGGATTTCCGAT 59.220 33.333 0.00 0.00 42.08 4.18
89 90 3.809832 CCTGGTGCTCGTATTTATCTTGG 59.190 47.826 0.00 0.00 0.00 3.61
92 93 5.552870 AATCCTGGTGCTCGTATTTATCT 57.447 39.130 0.00 0.00 0.00 1.98
99 100 3.531538 GATTCAAATCCTGGTGCTCGTA 58.468 45.455 0.00 0.00 0.00 3.43
116 117 1.148498 CCCCAGCCTAACCGGATTC 59.852 63.158 9.46 0.00 33.16 2.52
119 120 0.761702 GTATCCCCAGCCTAACCGGA 60.762 60.000 9.46 0.00 33.16 5.14
122 123 0.472898 GTGGTATCCCCAGCCTAACC 59.527 60.000 0.00 0.00 46.45 2.85
124 125 1.274184 ACAGTGGTATCCCCAGCCTAA 60.274 52.381 0.00 0.00 46.45 2.69
126 127 0.983378 GACAGTGGTATCCCCAGCCT 60.983 60.000 0.00 0.00 46.45 4.58
127 128 0.983378 AGACAGTGGTATCCCCAGCC 60.983 60.000 0.00 0.00 46.45 4.85
132 133 5.801380 TGTTTAGAAAGACAGTGGTATCCC 58.199 41.667 0.00 0.00 0.00 3.85
134 135 7.103641 TGGATGTTTAGAAAGACAGTGGTATC 58.896 38.462 0.00 0.00 0.00 2.24
138 139 5.048713 GGTTGGATGTTTAGAAAGACAGTGG 60.049 44.000 0.00 0.00 0.00 4.00
146 147 3.150767 CCCGTGGTTGGATGTTTAGAAA 58.849 45.455 0.00 0.00 0.00 2.52
148 149 1.700739 ACCCGTGGTTGGATGTTTAGA 59.299 47.619 0.00 0.00 27.29 2.10
153 154 2.434331 CCACCCGTGGTTGGATGT 59.566 61.111 5.66 0.00 45.53 3.06
166 167 4.778143 ATCCAGGCGCGAACCACC 62.778 66.667 12.10 0.00 0.00 4.61
169 170 4.508128 TCGATCCAGGCGCGAACC 62.508 66.667 12.10 1.22 0.00 3.62
171 172 2.202743 CTTCGATCCAGGCGCGAA 60.203 61.111 12.10 13.46 41.15 4.70
173 174 2.509336 AACTTCGATCCAGGCGCG 60.509 61.111 0.00 0.00 0.00 6.86
174 175 3.093278 CAACTTCGATCCAGGCGC 58.907 61.111 0.00 0.00 0.00 6.53
175 176 1.699656 CTGCAACTTCGATCCAGGCG 61.700 60.000 0.00 0.00 0.00 5.52
176 177 1.372087 CCTGCAACTTCGATCCAGGC 61.372 60.000 0.00 0.00 36.94 4.85
177 178 0.745845 CCCTGCAACTTCGATCCAGG 60.746 60.000 5.26 5.26 42.07 4.45
178 179 0.036010 ACCCTGCAACTTCGATCCAG 60.036 55.000 0.00 0.00 0.00 3.86
179 180 1.271856 TACCCTGCAACTTCGATCCA 58.728 50.000 0.00 0.00 0.00 3.41
180 181 2.484889 GATACCCTGCAACTTCGATCC 58.515 52.381 0.00 0.00 0.00 3.36
185 187 2.961526 TCTCGATACCCTGCAACTTC 57.038 50.000 0.00 0.00 0.00 3.01
194 196 3.244215 TGGCTTCATCAATCTCGATACCC 60.244 47.826 0.00 0.00 0.00 3.69
220 222 2.596452 ACGTCGTTAGTGAGATGCTTG 58.404 47.619 0.00 0.00 0.00 4.01
222 224 2.030185 ACAACGTCGTTAGTGAGATGCT 60.030 45.455 10.86 0.00 0.00 3.79
225 227 3.973657 ACAACAACGTCGTTAGTGAGAT 58.026 40.909 20.88 0.00 0.00 2.75
229 231 4.509915 AGAAACAACAACGTCGTTAGTG 57.490 40.909 10.86 13.52 0.00 2.74
270 272 4.682778 TTATATTTGTGGACGGAGGGAG 57.317 45.455 0.00 0.00 0.00 4.30
329 331 9.047371 TGATCGAACAAACACACTAGATTTTTA 57.953 29.630 0.00 0.00 0.00 1.52
335 337 6.704050 TGAAATGATCGAACAAACACACTAGA 59.296 34.615 0.00 0.00 0.00 2.43
336 338 6.887368 TGAAATGATCGAACAAACACACTAG 58.113 36.000 0.00 0.00 0.00 2.57
358 689 4.575236 CAGCTTAGACTACATACGGACTGA 59.425 45.833 0.00 0.00 0.00 3.41
363 694 8.516234 AGATATTTCAGCTTAGACTACATACGG 58.484 37.037 0.00 0.00 0.00 4.02
408 739 7.361799 GGTGTTTCATTAATACTCCCTTCACAC 60.362 40.741 0.00 0.00 0.00 3.82
425 756 7.209475 CCTAGTTCAATGTTTTGGTGTTTCAT 58.791 34.615 0.00 0.00 33.44 2.57
432 763 3.844640 AGCCCTAGTTCAATGTTTTGGT 58.155 40.909 0.00 0.00 33.44 3.67
466 797 6.631971 TGAAGTGCAATGATACTTTCAACA 57.368 33.333 0.00 0.00 38.03 3.33
511 842 1.301423 TGTACAAACAGTCCAACCGC 58.699 50.000 0.00 0.00 0.00 5.68
513 844 5.163893 CGTGATATGTACAAACAGTCCAACC 60.164 44.000 0.00 0.00 39.49 3.77
514 845 5.163893 CCGTGATATGTACAAACAGTCCAAC 60.164 44.000 0.00 0.00 39.49 3.77
519 850 5.105473 AGCTACCGTGATATGTACAAACAGT 60.105 40.000 0.00 0.00 39.49 3.55
555 887 9.661563 ACATATGTTCGACACTTCCTAAAAATA 57.338 29.630 1.41 0.00 0.00 1.40
556 888 8.450964 CACATATGTTCGACACTTCCTAAAAAT 58.549 33.333 5.37 0.00 0.00 1.82
618 950 6.231211 AGTAGTGCATATAATTGGTGTAGCC 58.769 40.000 0.00 0.00 37.90 3.93
645 983 2.420058 AAGTCCAATTTAGGCCGGAG 57.580 50.000 5.05 0.00 0.00 4.63
650 988 8.677148 TCTGTGATAATAAGTCCAATTTAGGC 57.323 34.615 0.00 0.00 0.00 3.93
680 1018 9.517609 CTTCTGCGACTTAGTACAAAGTTATAT 57.482 33.333 0.00 0.00 39.78 0.86
683 1021 6.154445 CCTTCTGCGACTTAGTACAAAGTTA 58.846 40.000 0.00 0.00 39.78 2.24
686 1024 3.368236 GCCTTCTGCGACTTAGTACAAAG 59.632 47.826 0.00 0.00 0.00 2.77
687 1025 3.243941 TGCCTTCTGCGACTTAGTACAAA 60.244 43.478 0.00 0.00 45.60 2.83
693 1031 1.470632 CCTCTGCCTTCTGCGACTTAG 60.471 57.143 0.00 0.00 45.60 2.18
697 1035 2.817396 GCCTCTGCCTTCTGCGAC 60.817 66.667 0.00 0.00 45.60 5.19
700 1038 1.642952 CTTTCGCCTCTGCCTTCTGC 61.643 60.000 0.00 0.00 41.77 4.26
701 1039 0.321122 ACTTTCGCCTCTGCCTTCTG 60.321 55.000 0.00 0.00 0.00 3.02
736 1133 1.346722 TCTTCCGTCCTTTCTTGGTCC 59.653 52.381 0.00 0.00 0.00 4.46
753 1150 1.215423 GAGAGGAGAGGAGAGGCTCTT 59.785 57.143 19.80 2.88 0.00 2.85
840 1237 3.426568 GCGGCAGAGTTGGAGTGC 61.427 66.667 0.00 0.00 36.42 4.40
841 1238 3.114616 CGCGGCAGAGTTGGAGTG 61.115 66.667 0.00 0.00 0.00 3.51
1790 2319 7.259882 TGCATAATAAAATTGGTGAAGAGCTG 58.740 34.615 0.00 0.00 0.00 4.24
1791 2320 7.408756 TGCATAATAAAATTGGTGAAGAGCT 57.591 32.000 0.00 0.00 0.00 4.09
1792 2321 9.748708 TTATGCATAATAAAATTGGTGAAGAGC 57.251 29.630 15.21 0.00 0.00 4.09
1809 2338 6.252599 ACAGGGACTCTCAATTATGCATAA 57.747 37.500 20.95 20.95 34.60 1.90
1813 2342 4.333926 GTCAACAGGGACTCTCAATTATGC 59.666 45.833 0.00 0.00 34.60 3.14
1825 2882 0.693049 AGACATGGGTCAACAGGGAC 59.307 55.000 0.00 0.00 46.80 4.46
1877 2935 1.947456 GGTTGGTCTTTCGCTTTCAGT 59.053 47.619 0.00 0.00 0.00 3.41
1963 5906 1.375853 GCTTCCTGCACACACACACA 61.376 55.000 0.00 0.00 42.31 3.72
1964 5907 1.097547 AGCTTCCTGCACACACACAC 61.098 55.000 0.00 0.00 45.94 3.82
2153 8836 5.801947 GCTATCTCACAAACGAAAATGCAAT 59.198 36.000 0.00 0.00 0.00 3.56
2207 8965 1.078848 GGCCAGCACTACACTCCAG 60.079 63.158 0.00 0.00 0.00 3.86
2214 8972 1.078143 CCTTCCAGGCCAGCACTAC 60.078 63.158 5.01 0.00 0.00 2.73
2329 9088 0.385390 GCTGGTGTGGTTTGGAACAG 59.615 55.000 0.00 0.00 42.39 3.16
2431 9190 3.054503 GGTGGCACTGCTGCTGAG 61.055 66.667 18.45 6.57 43.66 3.35
2433 9192 1.812686 AATTGGTGGCACTGCTGCTG 61.813 55.000 18.45 4.89 43.66 4.41
2434 9193 0.251297 TAATTGGTGGCACTGCTGCT 60.251 50.000 18.45 0.44 43.66 4.24
2435 9194 0.819582 ATAATTGGTGGCACTGCTGC 59.180 50.000 18.45 0.25 43.41 5.25
2436 9195 2.098607 CAGATAATTGGTGGCACTGCTG 59.901 50.000 18.45 10.23 0.00 4.41
2437 9196 2.025981 TCAGATAATTGGTGGCACTGCT 60.026 45.455 18.45 2.60 0.00 4.24
2438 9197 2.368439 TCAGATAATTGGTGGCACTGC 58.632 47.619 18.45 1.88 0.00 4.40
2439 9198 5.163513 GTTTTCAGATAATTGGTGGCACTG 58.836 41.667 18.45 5.23 0.00 3.66
2467 9259 2.701107 GAAGGCCAACTGAAGACTACC 58.299 52.381 5.01 0.00 0.00 3.18
2470 9262 0.759346 ACGAAGGCCAACTGAAGACT 59.241 50.000 5.01 0.00 0.00 3.24
2478 9270 0.243636 CCAAATCCACGAAGGCCAAC 59.756 55.000 5.01 0.00 37.29 3.77
2485 9277 0.682855 GATGGGGCCAAATCCACGAA 60.683 55.000 4.39 0.00 35.67 3.85
2525 9324 0.877071 ATGCCAGTTGCTTTCACGAG 59.123 50.000 0.00 0.00 42.00 4.18
2526 9325 0.874390 GATGCCAGTTGCTTTCACGA 59.126 50.000 0.00 0.00 42.00 4.35
2529 9328 1.243342 CCGGATGCCAGTTGCTTTCA 61.243 55.000 0.00 0.00 42.00 2.69
2530 9329 1.508088 CCGGATGCCAGTTGCTTTC 59.492 57.895 0.00 0.00 42.00 2.62
2531 9330 1.978617 CCCGGATGCCAGTTGCTTT 60.979 57.895 0.73 0.00 42.00 3.51
2533 9332 4.431131 CCCCGGATGCCAGTTGCT 62.431 66.667 0.73 0.00 42.00 3.91
2538 9337 4.528039 ATTGCCCCCGGATGCCAG 62.528 66.667 0.73 0.00 0.00 4.85
2539 9338 4.837797 CATTGCCCCCGGATGCCA 62.838 66.667 0.73 0.00 0.00 4.92
2542 9341 3.530260 GTGCATTGCCCCCGGATG 61.530 66.667 0.73 0.00 0.00 3.51
2543 9342 4.839706 GGTGCATTGCCCCCGGAT 62.840 66.667 0.73 0.00 0.00 4.18
2548 9347 2.684655 ATGGTGGTGCATTGCCCC 60.685 61.111 6.12 4.44 0.00 5.80
2549 9348 2.229690 GACATGGTGGTGCATTGCCC 62.230 60.000 6.12 7.64 0.00 5.36
2624 9423 1.220206 CCGCCTGCTCAATGAGAGT 59.780 57.895 15.38 0.00 46.47 3.24
2650 9449 2.130272 TCAGGTCGCAGTACTGATCT 57.870 50.000 27.08 9.31 36.73 2.75
2689 9488 5.854431 TCAACGATCGATCATTTCAACAA 57.146 34.783 24.34 0.00 0.00 2.83
2697 9496 5.007039 CCTGAACATTTCAACGATCGATCAT 59.993 40.000 24.34 7.27 39.58 2.45
2704 9503 4.156556 CCATCACCTGAACATTTCAACGAT 59.843 41.667 0.00 0.00 39.58 3.73
2705 9504 3.501828 CCATCACCTGAACATTTCAACGA 59.498 43.478 0.00 0.00 39.58 3.85
2706 9505 3.253188 ACCATCACCTGAACATTTCAACG 59.747 43.478 0.00 0.00 39.58 4.10
2725 9524 6.755542 AATTAGGAAAAATGGGAAACACCA 57.244 33.333 0.00 0.00 46.24 4.17
2736 9535 5.468409 CACGGGCAAACAAATTAGGAAAAAT 59.532 36.000 0.00 0.00 0.00 1.82
3213 10372 2.111878 GTGATGCCGAGGATGGGG 59.888 66.667 0.00 0.00 32.83 4.96
3379 10538 4.712425 AGCACGTACGTCCGGCAC 62.712 66.667 25.18 9.97 0.00 5.01
3380 10539 4.409218 GAGCACGTACGTCCGGCA 62.409 66.667 25.18 0.00 0.00 5.69
3381 10540 4.112341 AGAGCACGTACGTCCGGC 62.112 66.667 19.94 19.04 0.00 6.13
3431 10590 6.649141 AGCGAACAATCATGAAAGTACTACAA 59.351 34.615 0.00 0.00 0.00 2.41
3435 10594 4.327357 CGAGCGAACAATCATGAAAGTACT 59.673 41.667 0.00 0.00 0.00 2.73
3547 10707 2.575461 GCAGCATCAGGTTTGGCC 59.425 61.111 0.00 0.00 37.58 5.36
3549 10709 1.667236 TATCGCAGCATCAGGTTTGG 58.333 50.000 0.00 0.00 0.00 3.28
3551 10711 4.989279 AATTTATCGCAGCATCAGGTTT 57.011 36.364 0.00 0.00 0.00 3.27
3608 10807 6.600882 ACAGAGGGAGAGTTATTTCGTTTA 57.399 37.500 0.00 0.00 0.00 2.01
3618 10817 6.842676 AGAAAATTACAACAGAGGGAGAGTT 58.157 36.000 0.00 0.00 0.00 3.01
3620 10819 6.936900 TCAAGAAAATTACAACAGAGGGAGAG 59.063 38.462 0.00 0.00 0.00 3.20
3621 10820 6.837312 TCAAGAAAATTACAACAGAGGGAGA 58.163 36.000 0.00 0.00 0.00 3.71
3628 10827 9.903682 ACAGATGAATCAAGAAAATTACAACAG 57.096 29.630 0.00 0.00 0.00 3.16
3643 10851 6.311200 CACAAGTGATCGTTACAGATGAATCA 59.689 38.462 0.00 0.00 0.00 2.57
3651 10859 1.390123 CCGCACAAGTGATCGTTACAG 59.610 52.381 4.04 0.00 0.00 2.74
3660 10868 0.464036 AGAACTGTCCGCACAAGTGA 59.536 50.000 4.04 0.00 29.82 3.41
3669 10877 6.880822 TTTCGTATAATCAAGAACTGTCCG 57.119 37.500 0.00 0.00 0.00 4.79
3673 10881 8.840867 GCAAGTTTTTCGTATAATCAAGAACTG 58.159 33.333 0.00 0.00 0.00 3.16
3674 10882 8.021396 GGCAAGTTTTTCGTATAATCAAGAACT 58.979 33.333 0.00 0.00 0.00 3.01
3675 10883 8.021396 AGGCAAGTTTTTCGTATAATCAAGAAC 58.979 33.333 0.00 0.00 0.00 3.01
3676 10884 8.106247 AGGCAAGTTTTTCGTATAATCAAGAA 57.894 30.769 0.00 0.00 0.00 2.52
3677 10885 7.681939 AGGCAAGTTTTTCGTATAATCAAGA 57.318 32.000 0.00 0.00 0.00 3.02
3678 10886 8.447833 TGTAGGCAAGTTTTTCGTATAATCAAG 58.552 33.333 0.00 0.00 0.00 3.02
3679 10887 8.325421 TGTAGGCAAGTTTTTCGTATAATCAA 57.675 30.769 0.00 0.00 0.00 2.57
3680 10888 7.908827 TGTAGGCAAGTTTTTCGTATAATCA 57.091 32.000 0.00 0.00 0.00 2.57
3681 10889 7.695201 GGTTGTAGGCAAGTTTTTCGTATAATC 59.305 37.037 0.00 0.00 34.94 1.75
3682 10890 7.362315 GGGTTGTAGGCAAGTTTTTCGTATAAT 60.362 37.037 0.00 0.00 34.94 1.28
3683 10891 6.072563 GGGTTGTAGGCAAGTTTTTCGTATAA 60.073 38.462 0.00 0.00 34.94 0.98
3684 10892 5.412286 GGGTTGTAGGCAAGTTTTTCGTATA 59.588 40.000 0.00 0.00 34.94 1.47
3685 10893 4.216902 GGGTTGTAGGCAAGTTTTTCGTAT 59.783 41.667 0.00 0.00 34.94 3.06
3686 10894 3.565063 GGGTTGTAGGCAAGTTTTTCGTA 59.435 43.478 0.00 0.00 34.94 3.43
3687 10895 2.359848 GGGTTGTAGGCAAGTTTTTCGT 59.640 45.455 0.00 0.00 34.94 3.85
3688 10896 2.621526 AGGGTTGTAGGCAAGTTTTTCG 59.378 45.455 0.00 0.00 34.94 3.46
3689 10897 5.336451 CCATAGGGTTGTAGGCAAGTTTTTC 60.336 44.000 0.00 0.00 34.94 2.29
3690 10898 4.526650 CCATAGGGTTGTAGGCAAGTTTTT 59.473 41.667 0.00 0.00 34.94 1.94
3691 10899 4.086457 CCATAGGGTTGTAGGCAAGTTTT 58.914 43.478 0.00 0.00 34.94 2.43
3714 10930 5.712152 AATGAAGAAGAATGCGTCCTTTT 57.288 34.783 0.00 0.00 0.00 2.27
3717 10933 5.335976 GGAAAAATGAAGAAGAATGCGTCCT 60.336 40.000 0.00 0.00 0.00 3.85
3718 10934 4.859245 GGAAAAATGAAGAAGAATGCGTCC 59.141 41.667 0.00 0.00 0.00 4.79
3724 10940 7.510343 TCAGGGAAAGGAAAAATGAAGAAGAAT 59.490 33.333 0.00 0.00 0.00 2.40
3725 10941 6.838612 TCAGGGAAAGGAAAAATGAAGAAGAA 59.161 34.615 0.00 0.00 0.00 2.52
3728 10947 7.430760 TTTCAGGGAAAGGAAAAATGAAGAA 57.569 32.000 0.00 0.00 30.59 2.52
3764 10988 4.021719 AGCAATTTGCAGTGCAGAAATACT 60.022 37.500 22.55 13.42 46.84 2.12
3765 10989 4.240096 AGCAATTTGCAGTGCAGAAATAC 58.760 39.130 22.55 11.56 46.84 1.89
3844 11068 5.552178 AGCAAAAAGGTAGAGTTAGTGGAG 58.448 41.667 0.00 0.00 0.00 3.86
3872 11096 0.105246 AACCAATTGGGGGACAAGCA 60.105 50.000 27.89 0.00 43.48 3.91
3873 11097 0.321346 CAACCAATTGGGGGACAAGC 59.679 55.000 27.89 0.00 43.48 4.01
3874 11098 1.715785 ACAACCAATTGGGGGACAAG 58.284 50.000 27.89 11.45 43.48 3.16
3875 11099 1.765314 CAACAACCAATTGGGGGACAA 59.235 47.619 27.89 0.00 44.54 3.18
3877 11101 0.034756 GCAACAACCAATTGGGGGAC 59.965 55.000 27.89 8.84 42.91 4.46
3878 11102 0.399091 TGCAACAACCAATTGGGGGA 60.399 50.000 27.89 10.40 42.91 4.81
3879 11103 0.250252 GTGCAACAACCAATTGGGGG 60.250 55.000 27.89 20.47 40.42 5.40
3921 11145 9.003121 TATCCTGTCGATCCTAACCAAATTGGT 62.003 40.741 12.63 12.63 41.79 3.67
3963 11188 8.809468 TTTCATGACGCCTACTCTATATAGAT 57.191 34.615 12.86 6.45 0.00 1.98
3964 11189 8.631480 TTTTCATGACGCCTACTCTATATAGA 57.369 34.615 11.94 11.94 0.00 1.98
3965 11190 8.516234 ACTTTTCATGACGCCTACTCTATATAG 58.484 37.037 3.10 3.10 0.00 1.31
3966 11191 8.405418 ACTTTTCATGACGCCTACTCTATATA 57.595 34.615 0.00 0.00 0.00 0.86
3967 11192 7.291411 ACTTTTCATGACGCCTACTCTATAT 57.709 36.000 0.00 0.00 0.00 0.86
3968 11193 6.710597 ACTTTTCATGACGCCTACTCTATA 57.289 37.500 0.00 0.00 0.00 1.31
3969 11194 5.599999 ACTTTTCATGACGCCTACTCTAT 57.400 39.130 0.00 0.00 0.00 1.98
3974 11199 5.618561 CACTTAACTTTTCATGACGCCTAC 58.381 41.667 0.00 0.00 0.00 3.18
4027 11253 9.851686 AGCATAATTCATCCATTTTAGACAGTA 57.148 29.630 0.00 0.00 0.00 2.74
4040 11266 3.003480 GGCGTCCTAGCATAATTCATCC 58.997 50.000 0.00 0.00 39.27 3.51
4055 11281 2.171725 GTGGCAGTTATCGGCGTCC 61.172 63.158 6.85 0.00 35.70 4.79
4056 11282 1.447140 TGTGGCAGTTATCGGCGTC 60.447 57.895 6.85 0.00 35.70 5.19
4057 11283 1.740296 GTGTGGCAGTTATCGGCGT 60.740 57.895 6.85 0.00 35.70 5.68
4058 11284 2.798501 CGTGTGGCAGTTATCGGCG 61.799 63.158 0.00 0.00 35.70 6.46
4059 11285 1.740296 ACGTGTGGCAGTTATCGGC 60.740 57.895 0.00 0.00 0.00 5.54
4060 11286 0.669318 ACACGTGTGGCAGTTATCGG 60.669 55.000 22.71 0.00 34.19 4.18
4061 11287 0.438445 CACACGTGTGGCAGTTATCG 59.562 55.000 35.65 10.61 42.10 2.92
4071 11297 2.280254 TTACCGCCCACACGTGTG 60.280 61.111 36.13 36.13 45.23 3.82
4072 11298 2.029964 CTTACCGCCCACACGTGT 59.970 61.111 17.22 17.22 0.00 4.49
4073 11299 2.740826 CCTTACCGCCCACACGTG 60.741 66.667 15.48 15.48 0.00 4.49
4074 11300 2.328155 AAACCTTACCGCCCACACGT 62.328 55.000 0.00 0.00 0.00 4.49
4075 11301 0.320596 TAAACCTTACCGCCCACACG 60.321 55.000 0.00 0.00 0.00 4.49
4076 11302 1.271001 ACTAAACCTTACCGCCCACAC 60.271 52.381 0.00 0.00 0.00 3.82
4077 11303 1.058284 ACTAAACCTTACCGCCCACA 58.942 50.000 0.00 0.00 0.00 4.17
4078 11304 1.445871 CACTAAACCTTACCGCCCAC 58.554 55.000 0.00 0.00 0.00 4.61
4079 11305 0.321830 GCACTAAACCTTACCGCCCA 60.322 55.000 0.00 0.00 0.00 5.36
4080 11306 1.028330 GGCACTAAACCTTACCGCCC 61.028 60.000 0.00 0.00 31.76 6.13
4081 11307 1.363885 CGGCACTAAACCTTACCGCC 61.364 60.000 0.00 0.00 33.46 6.13
4082 11308 2.084013 CGGCACTAAACCTTACCGC 58.916 57.895 0.00 0.00 33.46 5.68
4083 11309 0.671163 TGCGGCACTAAACCTTACCG 60.671 55.000 0.00 0.00 43.37 4.02
4084 11310 0.800631 GTGCGGCACTAAACCTTACC 59.199 55.000 25.08 0.00 0.00 2.85
4085 11311 0.441145 CGTGCGGCACTAAACCTTAC 59.559 55.000 28.42 0.77 31.34 2.34
4086 11312 0.317799 TCGTGCGGCACTAAACCTTA 59.682 50.000 28.42 3.41 31.34 2.69
4087 11313 0.321298 ATCGTGCGGCACTAAACCTT 60.321 50.000 28.42 1.78 31.34 3.50
4088 11314 0.321298 AATCGTGCGGCACTAAACCT 60.321 50.000 28.42 2.16 31.34 3.50
4089 11315 0.096454 GAATCGTGCGGCACTAAACC 59.904 55.000 28.42 11.57 31.34 3.27
4090 11316 0.247145 CGAATCGTGCGGCACTAAAC 60.247 55.000 28.42 16.50 31.34 2.01
4091 11317 0.668096 ACGAATCGTGCGGCACTAAA 60.668 50.000 28.42 15.39 39.18 1.85
4092 11318 0.668096 AACGAATCGTGCGGCACTAA 60.668 50.000 28.42 17.78 39.99 2.24
4093 11319 1.074319 GAACGAATCGTGCGGCACTA 61.074 55.000 28.42 19.90 39.99 2.74
4094 11320 2.357034 AACGAATCGTGCGGCACT 60.357 55.556 28.42 12.18 39.99 4.40
4095 11321 2.095843 GAACGAATCGTGCGGCAC 59.904 61.111 22.78 22.78 39.99 5.01
4104 11330 1.263217 AGTGTTGTTGCCGAACGAATC 59.737 47.619 0.00 0.00 34.49 2.52
4105 11331 1.305201 AGTGTTGTTGCCGAACGAAT 58.695 45.000 0.00 0.00 34.49 3.34
4106 11332 1.088306 AAGTGTTGTTGCCGAACGAA 58.912 45.000 0.00 0.00 34.49 3.85
4107 11333 0.375454 CAAGTGTTGTTGCCGAACGA 59.625 50.000 0.00 0.00 34.49 3.85
4108 11334 1.199852 GCAAGTGTTGTTGCCGAACG 61.200 55.000 0.00 0.00 46.00 3.95
4109 11335 2.577225 GCAAGTGTTGTTGCCGAAC 58.423 52.632 0.00 0.00 46.00 3.95
4115 11341 1.067916 GGGCTGGCAAGTGTTGTTG 59.932 57.895 2.88 0.00 0.00 3.33
4116 11342 2.489275 CGGGCTGGCAAGTGTTGTT 61.489 57.895 2.88 0.00 0.00 2.83
4117 11343 2.906897 CGGGCTGGCAAGTGTTGT 60.907 61.111 2.88 0.00 0.00 3.32
4118 11344 4.347453 GCGGGCTGGCAAGTGTTG 62.347 66.667 2.88 0.00 0.00 3.33
4119 11345 4.892965 TGCGGGCTGGCAAGTGTT 62.893 61.111 2.88 0.00 40.59 3.32
4159 11385 4.812476 TGATCGTTCGGGCGCTGG 62.812 66.667 7.64 0.00 0.00 4.85
4160 11386 3.257561 CTGATCGTTCGGGCGCTG 61.258 66.667 7.64 0.00 0.00 5.18
4161 11387 4.514577 CCTGATCGTTCGGGCGCT 62.515 66.667 7.64 0.00 41.50 5.92
4166 11392 2.892425 GGCTGCCTGATCGTTCGG 60.892 66.667 12.43 0.00 0.00 4.30
4167 11393 2.125552 TGGCTGCCTGATCGTTCG 60.126 61.111 21.03 0.00 0.00 3.95
4168 11394 0.745845 ATGTGGCTGCCTGATCGTTC 60.746 55.000 21.03 1.25 0.00 3.95
4169 11395 0.541392 TATGTGGCTGCCTGATCGTT 59.459 50.000 21.03 0.54 0.00 3.85
4170 11396 0.761187 ATATGTGGCTGCCTGATCGT 59.239 50.000 21.03 11.08 0.00 3.73
4171 11397 1.154197 CATATGTGGCTGCCTGATCG 58.846 55.000 21.03 0.18 0.00 3.69
4172 11398 1.878088 CACATATGTGGCTGCCTGATC 59.122 52.381 25.41 8.32 42.10 2.92
4173 11399 1.977056 CACATATGTGGCTGCCTGAT 58.023 50.000 25.41 13.53 42.10 2.90
4174 11400 3.482147 CACATATGTGGCTGCCTGA 57.518 52.632 25.41 6.45 42.10 3.86
4183 11409 3.110139 GTGCGGGCCACATATGTG 58.890 61.111 26.02 26.02 44.06 3.21
4213 11439 1.738830 CGGGCTTTGGCAATTGCTG 60.739 57.895 28.42 16.95 41.70 4.41
4214 11440 2.658422 CGGGCTTTGGCAATTGCT 59.342 55.556 28.42 0.00 41.70 3.91
4215 11441 3.120385 GCGGGCTTTGGCAATTGC 61.120 61.111 22.47 22.47 40.87 3.56
4216 11442 2.028733 GTGCGGGCTTTGGCAATTG 61.029 57.895 0.00 0.00 41.46 2.32
4217 11443 2.343387 GTGCGGGCTTTGGCAATT 59.657 55.556 0.00 0.00 41.46 2.32
4218 11444 4.054825 CGTGCGGGCTTTGGCAAT 62.055 61.111 0.00 0.00 41.46 3.56
4221 11447 4.999939 CAACGTGCGGGCTTTGGC 63.000 66.667 0.00 0.00 37.82 4.52
4222 11448 3.536498 GACAACGTGCGGGCTTTGG 62.536 63.158 0.00 0.00 0.00 3.28
4223 11449 2.051345 GACAACGTGCGGGCTTTG 60.051 61.111 0.00 0.00 0.00 2.77
4224 11450 2.115911 TTGACAACGTGCGGGCTTT 61.116 52.632 0.00 0.00 0.00 3.51
4225 11451 2.515057 TTGACAACGTGCGGGCTT 60.515 55.556 0.00 0.00 0.00 4.35
4226 11452 3.276846 GTTGACAACGTGCGGGCT 61.277 61.111 1.86 0.00 0.00 5.19
4227 11453 3.276846 AGTTGACAACGTGCGGGC 61.277 61.111 12.54 0.00 36.23 6.13
4228 11454 2.631428 CAGTTGACAACGTGCGGG 59.369 61.111 12.54 0.00 36.23 6.13
4229 11455 2.052237 GCAGTTGACAACGTGCGG 60.052 61.111 19.74 8.82 36.23 5.69
4230 11456 2.052237 GGCAGTTGACAACGTGCG 60.052 61.111 23.95 12.95 36.82 5.34
4231 11457 2.331451 GGGCAGTTGACAACGTGC 59.669 61.111 23.38 23.38 35.91 5.34
4232 11458 1.380403 TTGGGGCAGTTGACAACGTG 61.380 55.000 12.54 11.79 36.23 4.49
4233 11459 0.681564 TTTGGGGCAGTTGACAACGT 60.682 50.000 12.54 0.00 36.23 3.99
4234 11460 0.457851 TTTTGGGGCAGTTGACAACG 59.542 50.000 12.54 8.86 36.23 4.10
4235 11461 2.276201 GTTTTTGGGGCAGTTGACAAC 58.724 47.619 10.47 10.47 0.00 3.32
4236 11462 1.134965 CGTTTTTGGGGCAGTTGACAA 60.135 47.619 0.00 0.00 0.00 3.18
4237 11463 0.457851 CGTTTTTGGGGCAGTTGACA 59.542 50.000 0.00 0.00 0.00 3.58
4238 11464 0.874175 GCGTTTTTGGGGCAGTTGAC 60.874 55.000 0.00 0.00 0.00 3.18
4239 11465 1.439644 GCGTTTTTGGGGCAGTTGA 59.560 52.632 0.00 0.00 0.00 3.18
4240 11466 1.594021 GGCGTTTTTGGGGCAGTTG 60.594 57.895 0.00 0.00 0.00 3.16
4241 11467 1.760480 AGGCGTTTTTGGGGCAGTT 60.760 52.632 0.00 0.00 0.00 3.16
4242 11468 2.123468 AGGCGTTTTTGGGGCAGT 60.123 55.556 0.00 0.00 0.00 4.40
4243 11469 2.339712 CAGGCGTTTTTGGGGCAG 59.660 61.111 0.00 0.00 0.00 4.85
4244 11470 3.922640 GCAGGCGTTTTTGGGGCA 61.923 61.111 0.00 0.00 0.00 5.36
4245 11471 4.680237 GGCAGGCGTTTTTGGGGC 62.680 66.667 0.00 0.00 0.00 5.80
4246 11472 4.002506 GGGCAGGCGTTTTTGGGG 62.003 66.667 0.00 0.00 0.00 4.96
4247 11473 4.356442 CGGGCAGGCGTTTTTGGG 62.356 66.667 0.00 0.00 0.00 4.12
4249 11475 3.781770 TTGCGGGCAGGCGTTTTTG 62.782 57.895 0.00 0.00 35.06 2.44
4250 11476 2.579684 TTTTGCGGGCAGGCGTTTTT 62.580 50.000 0.00 0.00 35.06 1.94
4251 11477 3.082579 TTTTGCGGGCAGGCGTTTT 62.083 52.632 0.00 0.00 35.06 2.43
4252 11478 3.532155 TTTTGCGGGCAGGCGTTT 61.532 55.556 0.00 0.00 35.06 3.60
4253 11479 4.279043 GTTTTGCGGGCAGGCGTT 62.279 61.111 0.00 0.00 35.06 4.84
4255 11481 4.404654 GAGTTTTGCGGGCAGGCG 62.405 66.667 0.00 0.00 35.06 5.52
4256 11482 4.056125 GGAGTTTTGCGGGCAGGC 62.056 66.667 0.00 0.00 0.00 4.85
4257 11483 3.373565 GGGAGTTTTGCGGGCAGG 61.374 66.667 0.00 0.00 0.00 4.85
4258 11484 3.737172 CGGGAGTTTTGCGGGCAG 61.737 66.667 0.00 0.00 0.00 4.85
4259 11485 2.677765 TTACGGGAGTTTTGCGGGCA 62.678 55.000 0.00 0.00 43.33 5.36
4260 11486 1.967494 TTACGGGAGTTTTGCGGGC 60.967 57.895 0.00 0.00 43.33 6.13
4261 11487 1.579964 GGTTACGGGAGTTTTGCGGG 61.580 60.000 0.00 0.00 43.33 6.13
4262 11488 1.579964 GGGTTACGGGAGTTTTGCGG 61.580 60.000 0.00 0.00 43.33 5.69
4263 11489 1.579964 GGGGTTACGGGAGTTTTGCG 61.580 60.000 0.00 0.00 43.33 4.85
4264 11490 0.251033 AGGGGTTACGGGAGTTTTGC 60.251 55.000 0.00 0.00 43.33 3.68
4265 11491 1.612462 GGAGGGGTTACGGGAGTTTTG 60.612 57.143 0.00 0.00 43.33 2.44
4266 11492 0.694771 GGAGGGGTTACGGGAGTTTT 59.305 55.000 0.00 0.00 43.33 2.43
4267 11493 0.178882 AGGAGGGGTTACGGGAGTTT 60.179 55.000 0.00 0.00 43.33 2.66
4268 11494 0.616964 GAGGAGGGGTTACGGGAGTT 60.617 60.000 0.00 0.00 43.33 3.01
4270 11496 1.761271 GGAGGAGGGGTTACGGGAG 60.761 68.421 0.00 0.00 0.00 4.30
4271 11497 2.109494 TTGGAGGAGGGGTTACGGGA 62.109 60.000 0.00 0.00 0.00 5.14
4272 11498 1.614226 TTGGAGGAGGGGTTACGGG 60.614 63.158 0.00 0.00 0.00 5.28
4273 11499 0.908180 AGTTGGAGGAGGGGTTACGG 60.908 60.000 0.00 0.00 0.00 4.02
4274 11500 0.535797 GAGTTGGAGGAGGGGTTACG 59.464 60.000 0.00 0.00 0.00 3.18
4275 11501 0.910338 GGAGTTGGAGGAGGGGTTAC 59.090 60.000 0.00 0.00 0.00 2.50
4276 11502 0.797579 AGGAGTTGGAGGAGGGGTTA 59.202 55.000 0.00 0.00 0.00 2.85
4277 11503 0.103876 AAGGAGTTGGAGGAGGGGTT 60.104 55.000 0.00 0.00 0.00 4.11
4278 11504 0.547954 GAAGGAGTTGGAGGAGGGGT 60.548 60.000 0.00 0.00 0.00 4.95
4279 11505 1.617947 CGAAGGAGTTGGAGGAGGGG 61.618 65.000 0.00 0.00 0.00 4.79
4280 11506 0.905337 ACGAAGGAGTTGGAGGAGGG 60.905 60.000 0.00 0.00 0.00 4.30
4281 11507 0.533032 GACGAAGGAGTTGGAGGAGG 59.467 60.000 0.00 0.00 0.00 4.30
4282 11508 1.551452 AGACGAAGGAGTTGGAGGAG 58.449 55.000 0.00 0.00 0.00 3.69
4283 11509 2.444421 GTAGACGAAGGAGTTGGAGGA 58.556 52.381 0.00 0.00 0.00 3.71
4284 11510 1.477295 GGTAGACGAAGGAGTTGGAGG 59.523 57.143 0.00 0.00 0.00 4.30
4285 11511 2.424246 GAGGTAGACGAAGGAGTTGGAG 59.576 54.545 0.00 0.00 0.00 3.86
4286 11512 2.041350 AGAGGTAGACGAAGGAGTTGGA 59.959 50.000 0.00 0.00 0.00 3.53
4287 11513 2.164624 CAGAGGTAGACGAAGGAGTTGG 59.835 54.545 0.00 0.00 0.00 3.77
4288 11514 2.416162 GCAGAGGTAGACGAAGGAGTTG 60.416 54.545 0.00 0.00 0.00 3.16
4289 11515 1.819903 GCAGAGGTAGACGAAGGAGTT 59.180 52.381 0.00 0.00 0.00 3.01
4290 11516 1.465794 GCAGAGGTAGACGAAGGAGT 58.534 55.000 0.00 0.00 0.00 3.85
4291 11517 0.741915 GGCAGAGGTAGACGAAGGAG 59.258 60.000 0.00 0.00 0.00 3.69
4292 11518 0.683504 GGGCAGAGGTAGACGAAGGA 60.684 60.000 0.00 0.00 0.00 3.36
4293 11519 1.677637 GGGGCAGAGGTAGACGAAGG 61.678 65.000 0.00 0.00 0.00 3.46
4294 11520 0.684805 AGGGGCAGAGGTAGACGAAG 60.685 60.000 0.00 0.00 0.00 3.79
4295 11521 0.970937 CAGGGGCAGAGGTAGACGAA 60.971 60.000 0.00 0.00 0.00 3.85
4296 11522 1.379977 CAGGGGCAGAGGTAGACGA 60.380 63.158 0.00 0.00 0.00 4.20
4297 11523 3.082579 GCAGGGGCAGAGGTAGACG 62.083 68.421 0.00 0.00 40.72 4.18
4298 11524 1.681486 GAGCAGGGGCAGAGGTAGAC 61.681 65.000 0.00 0.00 44.61 2.59
4299 11525 1.381872 GAGCAGGGGCAGAGGTAGA 60.382 63.158 0.00 0.00 44.61 2.59
4300 11526 2.790791 CGAGCAGGGGCAGAGGTAG 61.791 68.421 0.00 0.00 44.61 3.18
4301 11527 2.759973 CGAGCAGGGGCAGAGGTA 60.760 66.667 0.00 0.00 44.61 3.08
4303 11529 4.154347 GACGAGCAGGGGCAGAGG 62.154 72.222 0.00 0.00 44.61 3.69
4304 11530 2.654079 AAGACGAGCAGGGGCAGAG 61.654 63.158 0.00 0.00 44.61 3.35
4305 11531 2.604686 AAGACGAGCAGGGGCAGA 60.605 61.111 0.00 0.00 44.61 4.26
4306 11532 2.435586 CAAGACGAGCAGGGGCAG 60.436 66.667 0.00 0.00 44.61 4.85
4307 11533 2.731691 GAACAAGACGAGCAGGGGCA 62.732 60.000 0.00 0.00 44.61 5.36
4308 11534 2.032681 AACAAGACGAGCAGGGGC 59.967 61.111 0.00 0.00 41.61 5.80
4309 11535 0.951040 GTGAACAAGACGAGCAGGGG 60.951 60.000 0.00 0.00 0.00 4.79
4310 11536 0.951040 GGTGAACAAGACGAGCAGGG 60.951 60.000 0.00 0.00 0.00 4.45
4311 11537 0.034059 AGGTGAACAAGACGAGCAGG 59.966 55.000 0.00 0.00 0.00 4.85
4312 11538 1.423395 GAGGTGAACAAGACGAGCAG 58.577 55.000 0.00 0.00 0.00 4.24
4313 11539 0.033504 GGAGGTGAACAAGACGAGCA 59.966 55.000 0.00 0.00 0.00 4.26
4314 11540 1.009389 CGGAGGTGAACAAGACGAGC 61.009 60.000 0.00 0.00 0.00 5.03
4315 11541 1.009389 GCGGAGGTGAACAAGACGAG 61.009 60.000 0.00 0.00 0.00 4.18
4316 11542 1.006571 GCGGAGGTGAACAAGACGA 60.007 57.895 0.00 0.00 0.00 4.20
4317 11543 2.027625 GGCGGAGGTGAACAAGACG 61.028 63.158 0.00 0.00 0.00 4.18
4318 11544 2.027625 CGGCGGAGGTGAACAAGAC 61.028 63.158 0.00 0.00 0.00 3.01
4319 11545 1.541310 ATCGGCGGAGGTGAACAAGA 61.541 55.000 7.21 0.00 0.00 3.02
4320 11546 0.174845 TATCGGCGGAGGTGAACAAG 59.825 55.000 7.21 0.00 0.00 3.16
4321 11547 0.828022 ATATCGGCGGAGGTGAACAA 59.172 50.000 7.21 0.00 0.00 2.83
4322 11548 0.104120 CATATCGGCGGAGGTGAACA 59.896 55.000 7.21 0.00 0.00 3.18
4323 11549 1.222115 GCATATCGGCGGAGGTGAAC 61.222 60.000 7.21 0.00 0.00 3.18
4324 11550 1.069090 GCATATCGGCGGAGGTGAA 59.931 57.895 7.21 0.00 0.00 3.18
4325 11551 2.131067 TGCATATCGGCGGAGGTGA 61.131 57.895 7.21 0.00 36.28 4.02
4326 11552 1.956170 GTGCATATCGGCGGAGGTG 60.956 63.158 7.21 2.50 36.28 4.00
4327 11553 2.421739 GTGCATATCGGCGGAGGT 59.578 61.111 7.21 0.00 36.28 3.85
4328 11554 2.357517 GGTGCATATCGGCGGAGG 60.358 66.667 7.21 0.00 36.28 4.30
4329 11555 2.357517 GGGTGCATATCGGCGGAG 60.358 66.667 7.21 0.00 36.28 4.63
4330 11556 2.258748 TTTGGGTGCATATCGGCGGA 62.259 55.000 7.21 0.00 36.28 5.54
4331 11557 1.172180 ATTTGGGTGCATATCGGCGG 61.172 55.000 7.21 0.00 36.28 6.13
4332 11558 0.238289 GATTTGGGTGCATATCGGCG 59.762 55.000 0.00 0.00 36.28 6.46
4333 11559 0.238289 CGATTTGGGTGCATATCGGC 59.762 55.000 0.00 0.00 36.99 5.54
4334 11560 0.238289 GCGATTTGGGTGCATATCGG 59.762 55.000 15.05 3.60 40.01 4.18
4335 11561 0.238289 GGCGATTTGGGTGCATATCG 59.762 55.000 0.00 0.00 41.93 2.92
4336 11562 1.317613 TGGCGATTTGGGTGCATATC 58.682 50.000 0.00 0.00 0.00 1.63
4337 11563 1.614903 CATGGCGATTTGGGTGCATAT 59.385 47.619 0.00 0.00 0.00 1.78
4338 11564 1.031235 CATGGCGATTTGGGTGCATA 58.969 50.000 0.00 0.00 0.00 3.14
4339 11565 1.678598 CCATGGCGATTTGGGTGCAT 61.679 55.000 0.00 0.00 0.00 3.96
4340 11566 2.349672 CCATGGCGATTTGGGTGCA 61.350 57.895 0.00 0.00 0.00 4.57
4341 11567 2.495866 CCATGGCGATTTGGGTGC 59.504 61.111 0.00 0.00 0.00 5.01
4342 11568 1.886253 TTGCCATGGCGATTTGGGTG 61.886 55.000 30.87 0.00 45.51 4.61
4343 11569 1.608918 TTGCCATGGCGATTTGGGT 60.609 52.632 30.87 0.00 45.51 4.51
4344 11570 1.153588 GTTGCCATGGCGATTTGGG 60.154 57.895 29.44 0.00 45.51 4.12
4345 11571 0.037512 TTGTTGCCATGGCGATTTGG 60.038 50.000 29.44 0.00 45.51 3.28
4346 11572 1.352114 CTTGTTGCCATGGCGATTTG 58.648 50.000 29.44 17.31 45.51 2.32
4347 11573 0.247185 CCTTGTTGCCATGGCGATTT 59.753 50.000 29.44 0.00 45.51 2.17
4348 11574 0.899717 ACCTTGTTGCCATGGCGATT 60.900 50.000 29.44 9.27 45.51 3.34
4349 11575 1.304381 ACCTTGTTGCCATGGCGAT 60.304 52.632 29.44 10.68 45.51 4.58
4350 11576 1.971167 GACCTTGTTGCCATGGCGA 60.971 57.895 30.87 27.42 45.51 5.54
4351 11577 2.568090 GACCTTGTTGCCATGGCG 59.432 61.111 30.87 18.00 45.51 5.69
4352 11578 2.568090 CGACCTTGTTGCCATGGC 59.432 61.111 30.54 30.54 39.04 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.