Multiple sequence alignment - TraesCS3D01G336300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G336300 chr3D 100.000 3963 0 0 1 3963 448263438 448267400 0.000000e+00 7319.0
1 TraesCS3D01G336300 chr3D 89.583 48 4 1 3603 3649 477254853 477254900 4.280000e-05 60.2
2 TraesCS3D01G336300 chr3A 90.982 2506 155 33 3 2455 589534654 589537141 0.000000e+00 3310.0
3 TraesCS3D01G336300 chr3A 89.238 669 34 17 2744 3405 589537498 589538135 0.000000e+00 802.0
4 TraesCS3D01G336300 chr3A 91.830 306 15 2 2454 2757 589537181 589537478 6.130000e-113 418.0
5 TraesCS3D01G336300 chr3B 89.996 2369 152 35 151 2476 587963900 587966226 0.000000e+00 2983.0
6 TraesCS3D01G336300 chr3B 90.125 1124 47 16 2536 3642 587966225 587967301 0.000000e+00 1402.0
7 TraesCS3D01G336300 chr3B 92.576 229 13 2 3739 3963 587987780 587988008 3.820000e-85 326.0
8 TraesCS3D01G336300 chr3B 94.545 110 5 1 3637 3746 587972671 587972779 6.810000e-38 169.0
9 TraesCS3D01G336300 chr3B 98.649 74 0 1 3 76 587963607 587963679 3.210000e-26 130.0
10 TraesCS3D01G336300 chr1D 87.755 147 18 0 2817 2963 398980323 398980177 5.270000e-39 172.0
11 TraesCS3D01G336300 chr1A 85.542 166 20 4 2817 2981 495706893 495706731 1.890000e-38 171.0
12 TraesCS3D01G336300 chr1B 86.842 152 19 1 2813 2963 534669833 534669682 6.810000e-38 169.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G336300 chr3D 448263438 448267400 3962 False 7319 7319 100.000000 1 3963 1 chr3D.!!$F1 3962
1 TraesCS3D01G336300 chr3A 589534654 589538135 3481 False 1510 3310 90.683333 3 3405 3 chr3A.!!$F1 3402
2 TraesCS3D01G336300 chr3B 587963607 587967301 3694 False 1505 2983 92.923333 3 3642 3 chr3B.!!$F3 3639

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
160 307 0.034863 TTTTGGTAGATCCGTGGCCC 60.035 55.0 0.00 0.0 39.52 5.80 F
377 525 0.666577 GTTCCTCTTAGCGCGTGTGT 60.667 55.0 8.43 0.0 0.00 3.72 F
1473 1672 0.317854 GTCAGTGTCCTTTTTGCGGC 60.318 55.0 0.00 0.0 0.00 6.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1439 1637 0.590195 CTGACAAGACAGCAACTGCC 59.410 55.0 0.00 0.0 43.38 4.85 R
1827 2030 0.796927 GTTCAGCACTAACCTTCGGC 59.203 55.0 0.00 0.0 0.00 5.54 R
3310 3620 0.402504 ACAGCCAATCCGGTACCAAA 59.597 50.0 13.54 0.0 36.97 3.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 85 1.818363 CGATCTGTCTCCGTCCCGA 60.818 63.158 0.00 0.00 0.00 5.14
99 100 0.648958 CCCGACCTTCGCGTAATTTC 59.351 55.000 5.77 0.00 38.82 2.17
100 101 0.648958 CCGACCTTCGCGTAATTTCC 59.351 55.000 5.77 0.00 38.82 3.13
124 125 1.527380 AATTCCGTTGTGGCCGTGT 60.527 52.632 0.00 0.00 37.80 4.49
127 128 2.590575 CCGTTGTGGCCGTGTCTT 60.591 61.111 0.00 0.00 0.00 3.01
133 134 0.888736 TGTGGCCGTGTCTTGATTGG 60.889 55.000 0.00 0.00 0.00 3.16
135 136 0.605319 TGGCCGTGTCTTGATTGGTC 60.605 55.000 0.00 0.00 0.00 4.02
160 307 0.034863 TTTTGGTAGATCCGTGGCCC 60.035 55.000 0.00 0.00 39.52 5.80
199 346 3.995506 ATTGCGGTAGGGCCTGTGC 62.996 63.158 18.53 17.37 34.25 4.57
243 390 4.487412 GGCGATTCGTCCGTCGGT 62.487 66.667 11.88 0.00 40.32 4.69
253 400 0.729116 GTCCGTCGGTCTGTCGATTA 59.271 55.000 11.88 0.00 41.40 1.75
305 452 1.687494 GCCTCGATCTGTTGCGTGAC 61.687 60.000 0.00 0.00 0.00 3.67
337 484 1.226686 GATCGTCTAGTCGCGGGCTA 61.227 60.000 6.13 8.69 0.00 3.93
340 487 1.229315 CGTCTAGTCGCGGGCTATCT 61.229 60.000 6.13 0.00 0.00 1.98
368 516 6.402226 GCGAGGTATTTTGTTGTTCCTCTTAG 60.402 42.308 0.00 0.00 39.19 2.18
371 519 3.619233 TTTTGTTGTTCCTCTTAGCGC 57.381 42.857 0.00 0.00 0.00 5.92
377 525 0.666577 GTTCCTCTTAGCGCGTGTGT 60.667 55.000 8.43 0.00 0.00 3.72
379 527 1.372997 CCTCTTAGCGCGTGTGTGT 60.373 57.895 8.43 0.00 0.00 3.72
409 557 2.889852 CTAAACGGTCTTGCTAGGTCC 58.110 52.381 0.00 0.00 0.00 4.46
421 569 1.202428 GCTAGGTCCCAATCGACTGAC 60.202 57.143 0.00 0.00 33.07 3.51
434 582 4.336889 TCGACTGACATTTTCTCAAGGT 57.663 40.909 0.00 0.00 0.00 3.50
593 742 6.885952 TGCCTTGCTTGTTAATGTAGTTTA 57.114 33.333 0.00 0.00 0.00 2.01
616 765 1.339610 AGCCTGATGTCTACAGATCGC 59.660 52.381 0.00 0.00 37.54 4.58
636 785 9.717942 AGATCGCTATCTGCTAATTCTAATTTT 57.282 29.630 0.00 0.00 41.08 1.82
691 841 7.857456 TCCAGGATGAGTTTTATGCTAGTTTA 58.143 34.615 0.00 0.00 39.69 2.01
776 926 5.124936 GGTTACCACCCAATCATTACTTGAC 59.875 44.000 0.00 0.00 35.41 3.18
777 927 4.657814 ACCACCCAATCATTACTTGACT 57.342 40.909 0.00 0.00 37.11 3.41
780 930 5.195940 CCACCCAATCATTACTTGACTGAT 58.804 41.667 0.00 0.00 33.36 2.90
838 988 8.809468 ATATGAGTCAGTAGTGAAGTTACTCA 57.191 34.615 16.89 16.89 42.93 3.41
839 989 6.561737 TGAGTCAGTAGTGAAGTTACTCAG 57.438 41.667 12.63 0.00 37.02 3.35
840 990 6.062749 TGAGTCAGTAGTGAAGTTACTCAGT 58.937 40.000 12.63 0.00 37.02 3.41
841 991 6.017026 TGAGTCAGTAGTGAAGTTACTCAGTG 60.017 42.308 12.63 0.00 37.02 3.66
862 1025 2.488153 GCTTCGAGGCAATAAACCTGTT 59.512 45.455 15.47 0.00 37.77 3.16
1087 1253 2.297597 GCAGGTACGAGCCAGATCTATT 59.702 50.000 0.00 0.00 0.00 1.73
1145 1311 5.698089 TCTTAGCAGTGTTGATATATGCTGC 59.302 40.000 8.17 6.26 46.18 5.25
1147 1313 2.545526 GCAGTGTTGATATATGCTGCGT 59.454 45.455 0.00 0.00 39.60 5.24
1156 1322 5.055812 TGATATATGCTGCGTTCATGTGAA 58.944 37.500 0.00 0.00 0.00 3.18
1204 1381 4.593956 ACCTTCCATCTCTGGTGAAATTC 58.406 43.478 0.00 0.00 43.61 2.17
1284 1461 8.462016 GTCTACAAATATCCTTGCTGTCAATTT 58.538 33.333 0.00 0.00 0.00 1.82
1344 1521 2.229792 GCATCGGCCCATTGATAGAAA 58.770 47.619 0.00 0.00 0.00 2.52
1345 1522 2.821969 GCATCGGCCCATTGATAGAAAT 59.178 45.455 0.00 0.00 0.00 2.17
1346 1523 4.009675 GCATCGGCCCATTGATAGAAATA 58.990 43.478 0.00 0.00 0.00 1.40
1347 1524 4.095483 GCATCGGCCCATTGATAGAAATAG 59.905 45.833 0.00 0.00 0.00 1.73
1348 1525 5.491070 CATCGGCCCATTGATAGAAATAGA 58.509 41.667 0.00 0.00 0.00 1.98
1349 1526 5.560722 TCGGCCCATTGATAGAAATAGAA 57.439 39.130 0.00 0.00 0.00 2.10
1420 1618 5.297776 CAGTTTCATTCACTGTTCTTGACCT 59.702 40.000 0.00 0.00 37.47 3.85
1439 1637 9.689976 CTTGACCTAAGAGAATGTATCACTATG 57.310 37.037 0.00 0.00 38.76 2.23
1473 1672 0.317854 GTCAGTGTCCTTTTTGCGGC 60.318 55.000 0.00 0.00 0.00 6.53
1588 1791 1.172180 ACGGCCATCAACAACCACTG 61.172 55.000 2.24 0.00 0.00 3.66
1716 1919 9.682465 GTTTCTATTTATTTAGGTCCTTCTGGT 57.318 33.333 0.00 0.00 34.23 4.00
1827 2030 1.221021 GGACTACCCCTTCAAGCCG 59.779 63.158 0.00 0.00 0.00 5.52
1884 2087 5.987347 ACAAATTTCCTTGCATCTTTGTCAG 59.013 36.000 0.00 0.00 32.94 3.51
1982 2189 5.423015 AGCTCGTGTGATTTATGTTCATCT 58.577 37.500 0.00 0.00 0.00 2.90
2045 2253 6.415702 TCTCGTTTGTTTACAGAAATCGTTG 58.584 36.000 0.00 0.00 0.00 4.10
2107 2322 9.077885 TGTTGCTGAACCTATCTTTTCTTTTAT 57.922 29.630 0.00 0.00 0.00 1.40
2133 2353 7.504238 TCACCACATTATAGGTTCAACTTTGTT 59.496 33.333 0.00 0.00 35.52 2.83
2258 2481 2.674420 AGCAATGGAAGCATATGCCTT 58.326 42.857 23.96 16.56 43.38 4.35
2431 2661 2.551459 ACAGTTCTCTGCATTGCTTCAC 59.449 45.455 10.49 0.18 44.77 3.18
2479 2750 3.181446 TGTCTGATGTGATTTGGTGGACA 60.181 43.478 0.00 0.00 0.00 4.02
2520 2791 5.324409 TGTTTTGCCATCTGGTTCTAGAAT 58.676 37.500 8.75 0.00 37.57 2.40
2523 2794 5.692115 TTGCCATCTGGTTCTAGAATGTA 57.308 39.130 8.75 0.00 37.57 2.29
2528 2799 5.163364 CCATCTGGTTCTAGAATGTAGCTGT 60.163 44.000 8.75 0.00 0.00 4.40
2532 2803 4.283467 TGGTTCTAGAATGTAGCTGTGTGT 59.717 41.667 8.75 0.00 0.00 3.72
2576 2847 6.460399 CCGGAGTCTTAATTGTTTGTCCAAAA 60.460 38.462 0.00 0.00 31.33 2.44
2577 2848 6.416750 CGGAGTCTTAATTGTTTGTCCAAAAC 59.583 38.462 0.00 0.00 31.33 2.43
2578 2849 7.489160 GGAGTCTTAATTGTTTGTCCAAAACT 58.511 34.615 2.96 0.00 31.33 2.66
2579 2850 7.648112 GGAGTCTTAATTGTTTGTCCAAAACTC 59.352 37.037 7.78 7.78 31.33 3.01
2580 2851 7.489160 AGTCTTAATTGTTTGTCCAAAACTCC 58.511 34.615 2.96 0.00 31.33 3.85
2581 2852 7.123547 AGTCTTAATTGTTTGTCCAAAACTCCA 59.876 33.333 2.96 0.00 31.33 3.86
2582 2853 7.762159 GTCTTAATTGTTTGTCCAAAACTCCAA 59.238 33.333 2.96 0.00 31.33 3.53
2583 2854 8.314751 TCTTAATTGTTTGTCCAAAACTCCAAA 58.685 29.630 2.96 0.00 31.33 3.28
2652 2923 6.292150 AGCAGATATTAAGCCCAGTTACTTC 58.708 40.000 0.00 0.00 0.00 3.01
2676 2949 1.147473 GGGCTCAAAATTGCAAACCG 58.853 50.000 1.71 0.00 0.00 4.44
2751 3024 9.186837 CCTTGAGGTCTAGTAATCTACAGTTAA 57.813 37.037 0.00 0.00 0.00 2.01
2815 3121 6.976934 AACTCCCAGTAATGTTGTTTTCAT 57.023 33.333 0.00 0.00 0.00 2.57
3010 3316 3.499048 CTTGCATGCAGAAGATTGTGTC 58.501 45.455 21.50 0.00 0.00 3.67
3011 3317 2.506444 TGCATGCAGAAGATTGTGTCA 58.494 42.857 18.46 0.00 0.00 3.58
3161 3467 6.741992 TGAAATTGACATATGCTTCTCGTT 57.258 33.333 1.58 0.00 0.00 3.85
3171 3477 7.082602 ACATATGCTTCTCGTTATAACTACGG 58.917 38.462 13.56 0.00 39.38 4.02
3196 3506 2.238646 TGTTGGTTCTCCCATTCGCTAT 59.761 45.455 0.00 0.00 44.74 2.97
3205 3515 1.003580 CCCATTCGCTATATGGTGCCT 59.996 52.381 0.00 0.00 40.80 4.75
3210 3520 0.392706 CGCTATATGGTGCCTGTGGA 59.607 55.000 0.00 0.00 0.00 4.02
3274 3584 0.728542 TGCTCAGTTGCACGCATATG 59.271 50.000 0.00 0.00 38.12 1.78
3275 3585 0.729116 GCTCAGTTGCACGCATATGT 59.271 50.000 4.29 0.00 0.00 2.29
3276 3586 1.131126 GCTCAGTTGCACGCATATGTT 59.869 47.619 4.29 0.00 0.00 2.71
3277 3587 2.789092 GCTCAGTTGCACGCATATGTTC 60.789 50.000 4.29 0.00 0.00 3.18
3310 3620 8.540388 TCTCTGGTTATGTTACTGCTCTATTTT 58.460 33.333 0.00 0.00 0.00 1.82
3434 3751 7.690952 TGTAACTACCCCATGTACATTTTTC 57.309 36.000 5.37 0.00 0.00 2.29
3438 3755 6.260663 ACTACCCCATGTACATTTTTCCATT 58.739 36.000 5.37 0.00 0.00 3.16
3439 3756 7.415086 ACTACCCCATGTACATTTTTCCATTA 58.585 34.615 5.37 0.00 0.00 1.90
3447 3774 9.703892 CATGTACATTTTTCCATTAAGGTTGAA 57.296 29.630 5.37 0.00 39.02 2.69
3484 3811 1.750778 ACTGTGCCACTTGTTTTGGAG 59.249 47.619 0.00 0.00 36.02 3.86
3491 3818 1.956477 CACTTGTTTTGGAGTGGAGGG 59.044 52.381 0.00 0.00 39.60 4.30
3493 3820 2.158608 ACTTGTTTTGGAGTGGAGGGAG 60.159 50.000 0.00 0.00 0.00 4.30
3508 3835 3.118371 GGAGGGAGTAGTACCATTTGTGG 60.118 52.174 0.40 0.00 0.00 4.17
3509 3836 3.773119 GAGGGAGTAGTACCATTTGTGGA 59.227 47.826 0.40 0.00 0.00 4.02
3510 3837 4.371681 AGGGAGTAGTACCATTTGTGGAT 58.628 43.478 0.40 0.00 0.00 3.41
3511 3838 4.788617 AGGGAGTAGTACCATTTGTGGATT 59.211 41.667 0.40 0.00 0.00 3.01
3512 3839 4.881850 GGGAGTAGTACCATTTGTGGATTG 59.118 45.833 0.73 0.00 0.00 2.67
3513 3840 4.335594 GGAGTAGTACCATTTGTGGATTGC 59.664 45.833 0.73 0.00 0.00 3.56
3514 3841 4.917385 AGTAGTACCATTTGTGGATTGCA 58.083 39.130 0.73 0.00 0.00 4.08
3515 3842 5.509498 AGTAGTACCATTTGTGGATTGCAT 58.491 37.500 0.73 0.00 0.00 3.96
3516 3843 4.724074 AGTACCATTTGTGGATTGCATG 57.276 40.909 0.73 0.00 0.00 4.06
3517 3844 4.343231 AGTACCATTTGTGGATTGCATGA 58.657 39.130 0.00 0.00 0.00 3.07
3518 3845 4.771577 AGTACCATTTGTGGATTGCATGAA 59.228 37.500 0.00 0.00 0.00 2.57
3519 3846 4.620589 ACCATTTGTGGATTGCATGAAA 57.379 36.364 0.00 0.00 0.00 2.69
3520 3847 4.970711 ACCATTTGTGGATTGCATGAAAA 58.029 34.783 0.00 0.00 0.00 2.29
3521 3848 5.562635 ACCATTTGTGGATTGCATGAAAAT 58.437 33.333 0.00 0.00 0.00 1.82
3522 3849 5.413213 ACCATTTGTGGATTGCATGAAAATG 59.587 36.000 0.00 12.70 34.74 2.32
3602 3929 1.111277 GGTGGCAAGGTCACAAAGTT 58.889 50.000 3.19 0.00 40.26 2.66
3603 3930 2.092103 AGGTGGCAAGGTCACAAAGTTA 60.092 45.455 3.19 0.00 40.26 2.24
3606 3933 4.082949 GGTGGCAAGGTCACAAAGTTATAC 60.083 45.833 3.19 0.00 40.26 1.47
3634 3961 6.723052 CCTCCTTCCCATATTAATTGATGCTT 59.277 38.462 0.00 0.00 0.00 3.91
3635 3962 7.234166 CCTCCTTCCCATATTAATTGATGCTTT 59.766 37.037 0.00 0.00 0.00 3.51
3642 3969 9.811995 CCCATATTAATTGATGCTTTATGGATG 57.188 33.333 9.46 0.00 37.75 3.51
3650 3977 7.912056 TTGATGCTTTATGGATGTATCTAGC 57.088 36.000 0.00 0.00 0.00 3.42
3651 3978 7.008021 TGATGCTTTATGGATGTATCTAGCA 57.992 36.000 0.00 0.00 41.08 3.49
3653 3980 7.551617 TGATGCTTTATGGATGTATCTAGCATG 59.448 37.037 10.57 0.00 45.19 4.06
3654 3981 7.008021 TGCTTTATGGATGTATCTAGCATGA 57.992 36.000 0.00 0.00 32.94 3.07
3655 3982 6.875726 TGCTTTATGGATGTATCTAGCATGAC 59.124 38.462 0.00 0.00 32.94 3.06
3656 3983 6.035435 GCTTTATGGATGTATCTAGCATGACG 59.965 42.308 0.00 0.00 0.00 4.35
3657 3984 3.303881 TGGATGTATCTAGCATGACGC 57.696 47.619 0.00 0.00 42.91 5.19
3667 3994 3.611433 GCATGACGCTGAAATGGAC 57.389 52.632 0.00 0.00 37.77 4.02
3668 3995 0.247814 GCATGACGCTGAAATGGACG 60.248 55.000 0.00 0.00 37.77 4.79
3669 3996 1.078709 CATGACGCTGAAATGGACGT 58.921 50.000 0.00 0.00 42.27 4.34
3670 3997 2.267426 CATGACGCTGAAATGGACGTA 58.733 47.619 0.00 0.00 39.16 3.57
3671 3998 2.665649 TGACGCTGAAATGGACGTAT 57.334 45.000 0.00 0.00 39.16 3.06
3672 3999 2.536365 TGACGCTGAAATGGACGTATC 58.464 47.619 0.00 0.00 39.16 2.24
3673 4000 2.165641 TGACGCTGAAATGGACGTATCT 59.834 45.455 0.00 0.00 39.16 1.98
3674 4001 3.187700 GACGCTGAAATGGACGTATCTT 58.812 45.455 0.00 0.00 39.16 2.40
3675 4002 2.930040 ACGCTGAAATGGACGTATCTTG 59.070 45.455 0.00 0.00 36.91 3.02
3676 4003 2.930040 CGCTGAAATGGACGTATCTTGT 59.070 45.455 0.00 0.00 0.00 3.16
3677 4004 3.370978 CGCTGAAATGGACGTATCTTGTT 59.629 43.478 0.00 0.00 0.00 2.83
3678 4005 4.651994 GCTGAAATGGACGTATCTTGTTG 58.348 43.478 0.00 0.00 0.00 3.33
3679 4006 4.651994 CTGAAATGGACGTATCTTGTTGC 58.348 43.478 0.00 0.00 0.00 4.17
3680 4007 4.068599 TGAAATGGACGTATCTTGTTGCA 58.931 39.130 0.00 0.00 0.00 4.08
3681 4008 4.699735 TGAAATGGACGTATCTTGTTGCAT 59.300 37.500 0.00 0.00 0.00 3.96
3682 4009 4.621068 AATGGACGTATCTTGTTGCATG 57.379 40.909 0.00 0.00 0.00 4.06
3683 4010 2.355197 TGGACGTATCTTGTTGCATGG 58.645 47.619 0.00 0.00 0.00 3.66
3684 4011 2.027653 TGGACGTATCTTGTTGCATGGA 60.028 45.455 0.00 0.00 0.00 3.41
3685 4012 3.206150 GGACGTATCTTGTTGCATGGAT 58.794 45.455 0.00 0.00 0.00 3.41
3686 4013 3.002656 GGACGTATCTTGTTGCATGGATG 59.997 47.826 0.00 0.00 0.00 3.51
3687 4014 3.609853 ACGTATCTTGTTGCATGGATGT 58.390 40.909 0.00 0.00 0.00 3.06
3688 4015 4.765273 ACGTATCTTGTTGCATGGATGTA 58.235 39.130 0.00 0.00 0.00 2.29
3689 4016 5.368145 ACGTATCTTGTTGCATGGATGTAT 58.632 37.500 0.00 0.00 0.00 2.29
3690 4017 5.466728 ACGTATCTTGTTGCATGGATGTATC 59.533 40.000 0.00 0.00 0.00 2.24
3691 4018 5.698089 CGTATCTTGTTGCATGGATGTATCT 59.302 40.000 0.00 0.00 0.00 1.98
3692 4019 6.868339 CGTATCTTGTTGCATGGATGTATCTA 59.132 38.462 0.00 0.00 0.00 1.98
3693 4020 7.062722 CGTATCTTGTTGCATGGATGTATCTAG 59.937 40.741 0.00 0.00 0.00 2.43
3694 4021 5.059161 TCTTGTTGCATGGATGTATCTAGC 58.941 41.667 0.00 0.00 0.00 3.42
3695 4022 4.420522 TGTTGCATGGATGTATCTAGCA 57.579 40.909 0.00 0.00 0.00 3.49
3696 4023 4.976864 TGTTGCATGGATGTATCTAGCAT 58.023 39.130 0.00 0.00 31.79 3.79
3697 4024 4.758165 TGTTGCATGGATGTATCTAGCATG 59.242 41.667 0.00 0.00 31.79 4.06
3698 4025 4.895668 TGCATGGATGTATCTAGCATGA 57.104 40.909 0.00 0.00 30.47 3.07
3699 4026 4.572909 TGCATGGATGTATCTAGCATGAC 58.427 43.478 0.00 0.00 30.47 3.06
3700 4027 3.615937 GCATGGATGTATCTAGCATGACG 59.384 47.826 0.00 0.00 30.47 4.35
3701 4028 3.303881 TGGATGTATCTAGCATGACGC 57.696 47.619 0.00 0.00 42.91 5.19
3710 4037 4.842292 GCATGACGCTGAGATGGA 57.158 55.556 0.00 0.00 37.77 3.41
3711 4038 3.302375 GCATGACGCTGAGATGGAT 57.698 52.632 0.00 0.00 37.77 3.41
3712 4039 0.866427 GCATGACGCTGAGATGGATG 59.134 55.000 0.00 0.00 37.77 3.51
3713 4040 1.809271 GCATGACGCTGAGATGGATGT 60.809 52.381 0.00 0.00 37.77 3.06
3714 4041 2.546584 GCATGACGCTGAGATGGATGTA 60.547 50.000 0.00 0.00 37.77 2.29
3715 4042 3.863780 GCATGACGCTGAGATGGATGTAT 60.864 47.826 0.00 0.00 37.77 2.29
3716 4043 3.650070 TGACGCTGAGATGGATGTATC 57.350 47.619 0.00 0.00 0.00 2.24
3717 4044 3.225940 TGACGCTGAGATGGATGTATCT 58.774 45.455 0.00 0.00 40.02 1.98
3718 4045 3.638627 TGACGCTGAGATGGATGTATCTT 59.361 43.478 0.00 0.00 37.53 2.40
3719 4046 4.827284 TGACGCTGAGATGGATGTATCTTA 59.173 41.667 0.00 0.00 37.53 2.10
3720 4047 5.478332 TGACGCTGAGATGGATGTATCTTAT 59.522 40.000 0.00 0.00 37.53 1.73
3721 4048 5.718146 ACGCTGAGATGGATGTATCTTATG 58.282 41.667 0.00 0.00 37.53 1.90
3722 4049 4.565962 CGCTGAGATGGATGTATCTTATGC 59.434 45.833 0.00 0.00 37.53 3.14
3723 4050 5.624052 CGCTGAGATGGATGTATCTTATGCT 60.624 44.000 0.00 0.00 37.53 3.79
3724 4051 6.405176 CGCTGAGATGGATGTATCTTATGCTA 60.405 42.308 0.00 0.00 37.53 3.49
3725 4052 6.979817 GCTGAGATGGATGTATCTTATGCTAG 59.020 42.308 0.00 0.00 37.53 3.42
3726 4053 7.147932 GCTGAGATGGATGTATCTTATGCTAGA 60.148 40.741 0.00 0.00 37.53 2.43
3727 4054 8.835550 TGAGATGGATGTATCTTATGCTAGAT 57.164 34.615 0.00 0.00 37.53 1.98
3728 4055 9.927081 TGAGATGGATGTATCTTATGCTAGATA 57.073 33.333 0.00 0.00 37.53 1.98
3734 4061 9.474920 GGATGTATCTTATGCTAGATATTCAGC 57.525 37.037 0.00 3.22 38.87 4.26
3754 4081 9.749340 ATTCAGCATCAATTATTATGATCTGGA 57.251 29.630 0.00 7.31 35.38 3.86
3755 4082 9.749340 TTCAGCATCAATTATTATGATCTGGAT 57.251 29.630 0.00 0.00 35.38 3.41
3775 4102 6.560253 GGATACATCCATTTGAGCGTTAAT 57.440 37.500 3.26 0.00 46.38 1.40
3776 4103 6.970484 GGATACATCCATTTGAGCGTTAATT 58.030 36.000 3.26 0.00 46.38 1.40
3777 4104 8.094798 GGATACATCCATTTGAGCGTTAATTA 57.905 34.615 3.26 0.00 46.38 1.40
3778 4105 8.730680 GGATACATCCATTTGAGCGTTAATTAT 58.269 33.333 3.26 0.00 46.38 1.28
3782 4109 9.897744 ACATCCATTTGAGCGTTAATTATTATG 57.102 29.630 0.00 0.00 0.00 1.90
3785 4112 9.554395 TCCATTTGAGCGTTAATTATTATGAGA 57.446 29.630 0.00 0.00 0.00 3.27
3786 4113 9.599322 CCATTTGAGCGTTAATTATTATGAGAC 57.401 33.333 0.00 0.00 0.00 3.36
3787 4114 9.306280 CATTTGAGCGTTAATTATTATGAGACG 57.694 33.333 3.43 3.43 0.00 4.18
3788 4115 7.402811 TTGAGCGTTAATTATTATGAGACGG 57.597 36.000 8.39 0.00 0.00 4.79
3789 4116 6.741109 TGAGCGTTAATTATTATGAGACGGA 58.259 36.000 8.39 0.00 0.00 4.69
3790 4117 6.861572 TGAGCGTTAATTATTATGAGACGGAG 59.138 38.462 8.39 0.00 0.00 4.63
3791 4118 6.157211 AGCGTTAATTATTATGAGACGGAGG 58.843 40.000 8.39 0.00 0.00 4.30
3792 4119 5.347907 GCGTTAATTATTATGAGACGGAGGG 59.652 44.000 8.39 0.00 0.00 4.30
3793 4120 6.684686 CGTTAATTATTATGAGACGGAGGGA 58.315 40.000 0.56 0.00 0.00 4.20
3794 4121 6.807230 CGTTAATTATTATGAGACGGAGGGAG 59.193 42.308 0.56 0.00 0.00 4.30
3795 4122 7.523380 CGTTAATTATTATGAGACGGAGGGAGT 60.523 40.741 0.56 0.00 0.00 3.85
3796 4123 8.800332 GTTAATTATTATGAGACGGAGGGAGTA 58.200 37.037 0.00 0.00 0.00 2.59
3797 4124 9.543231 TTAATTATTATGAGACGGAGGGAGTAT 57.457 33.333 0.00 0.00 0.00 2.12
3798 4125 8.437274 AATTATTATGAGACGGAGGGAGTATT 57.563 34.615 0.00 0.00 0.00 1.89
3799 4126 9.543231 AATTATTATGAGACGGAGGGAGTATTA 57.457 33.333 0.00 0.00 0.00 0.98
3800 4127 9.716556 ATTATTATGAGACGGAGGGAGTATTAT 57.283 33.333 0.00 0.00 0.00 1.28
3801 4128 9.543231 TTATTATGAGACGGAGGGAGTATTATT 57.457 33.333 0.00 0.00 0.00 1.40
3802 4129 7.850935 TTATGAGACGGAGGGAGTATTATTT 57.149 36.000 0.00 0.00 0.00 1.40
3803 4130 6.749036 ATGAGACGGAGGGAGTATTATTTT 57.251 37.500 0.00 0.00 0.00 1.82
3804 4131 7.850935 ATGAGACGGAGGGAGTATTATTTTA 57.149 36.000 0.00 0.00 0.00 1.52
3805 4132 7.850935 TGAGACGGAGGGAGTATTATTTTAT 57.149 36.000 0.00 0.00 0.00 1.40
3806 4133 8.258850 TGAGACGGAGGGAGTATTATTTTATT 57.741 34.615 0.00 0.00 0.00 1.40
3807 4134 8.711170 TGAGACGGAGGGAGTATTATTTTATTT 58.289 33.333 0.00 0.00 0.00 1.40
3808 4135 9.557061 GAGACGGAGGGAGTATTATTTTATTTT 57.443 33.333 0.00 0.00 0.00 1.82
3809 4136 9.916360 AGACGGAGGGAGTATTATTTTATTTTT 57.084 29.630 0.00 0.00 0.00 1.94
3865 4192 9.904198 TCTATGTGAATGATCTCCATTTGTAAA 57.096 29.630 0.00 0.00 45.00 2.01
3868 4195 9.865321 ATGTGAATGATCTCCATTTGTAAAAAG 57.135 29.630 0.00 0.00 45.00 2.27
3869 4196 9.076781 TGTGAATGATCTCCATTTGTAAAAAGA 57.923 29.630 0.00 0.00 45.00 2.52
3885 4212 9.751542 TTGTAAAAAGATCAAAATTTAAGCGGA 57.248 25.926 0.00 0.00 0.00 5.54
3886 4213 9.187455 TGTAAAAAGATCAAAATTTAAGCGGAC 57.813 29.630 0.00 0.00 0.00 4.79
3887 4214 9.406828 GTAAAAAGATCAAAATTTAAGCGGACT 57.593 29.630 0.00 0.00 0.00 3.85
3888 4215 8.520835 AAAAAGATCAAAATTTAAGCGGACTC 57.479 30.769 0.00 0.00 0.00 3.36
3889 4216 5.819825 AGATCAAAATTTAAGCGGACTCC 57.180 39.130 0.00 0.00 0.00 3.85
3897 4224 4.913126 AGCGGACTCCGATTTGTC 57.087 55.556 22.08 2.00 45.97 3.18
3898 4225 1.218316 AGCGGACTCCGATTTGTCC 59.782 57.895 22.08 5.00 45.97 4.02
3901 4228 3.826637 GGACTCCGATTTGTCCGAA 57.173 52.632 0.00 0.00 42.51 4.30
3902 4229 2.311124 GGACTCCGATTTGTCCGAAT 57.689 50.000 0.00 0.00 42.51 3.34
3903 4230 2.629051 GGACTCCGATTTGTCCGAATT 58.371 47.619 0.00 0.00 42.51 2.17
3904 4231 2.608090 GGACTCCGATTTGTCCGAATTC 59.392 50.000 0.00 0.00 42.51 2.17
3905 4232 3.522553 GACTCCGATTTGTCCGAATTCT 58.477 45.455 3.52 0.00 0.00 2.40
3906 4233 4.441079 GGACTCCGATTTGTCCGAATTCTA 60.441 45.833 3.52 0.00 42.51 2.10
3907 4234 4.430908 ACTCCGATTTGTCCGAATTCTAC 58.569 43.478 3.52 2.56 0.00 2.59
3908 4235 4.081862 ACTCCGATTTGTCCGAATTCTACA 60.082 41.667 3.52 5.22 0.00 2.74
3909 4236 4.823157 TCCGATTTGTCCGAATTCTACAA 58.177 39.130 15.39 15.39 0.00 2.41
3910 4237 5.239351 TCCGATTTGTCCGAATTCTACAAA 58.761 37.500 25.49 25.49 44.56 2.83
3917 4244 3.861569 CCGAATTCTACAAATCGGCTC 57.138 47.619 3.52 0.00 46.97 4.70
3918 4245 3.458189 CCGAATTCTACAAATCGGCTCT 58.542 45.455 3.52 0.00 46.97 4.09
3919 4246 4.617959 CCGAATTCTACAAATCGGCTCTA 58.382 43.478 3.52 0.00 46.97 2.43
3920 4247 4.444720 CCGAATTCTACAAATCGGCTCTAC 59.555 45.833 3.52 0.00 46.97 2.59
3921 4248 4.444720 CGAATTCTACAAATCGGCTCTACC 59.555 45.833 3.52 0.00 0.00 3.18
3922 4249 5.353394 AATTCTACAAATCGGCTCTACCA 57.647 39.130 0.00 0.00 39.03 3.25
3923 4250 5.552870 ATTCTACAAATCGGCTCTACCAT 57.447 39.130 0.00 0.00 39.03 3.55
3924 4251 4.322080 TCTACAAATCGGCTCTACCATG 57.678 45.455 0.00 0.00 39.03 3.66
3925 4252 3.704566 TCTACAAATCGGCTCTACCATGT 59.295 43.478 0.00 0.00 39.03 3.21
3926 4253 2.906354 ACAAATCGGCTCTACCATGTC 58.094 47.619 0.00 0.00 39.03 3.06
3927 4254 2.501723 ACAAATCGGCTCTACCATGTCT 59.498 45.455 0.00 0.00 39.03 3.41
3928 4255 2.868583 CAAATCGGCTCTACCATGTCTG 59.131 50.000 0.00 0.00 39.03 3.51
3929 4256 0.390860 ATCGGCTCTACCATGTCTGC 59.609 55.000 0.00 0.00 39.03 4.26
3930 4257 1.589993 CGGCTCTACCATGTCTGCG 60.590 63.158 0.00 0.00 39.03 5.18
3931 4258 1.517832 GGCTCTACCATGTCTGCGT 59.482 57.895 0.00 0.00 38.86 5.24
3932 4259 0.108138 GGCTCTACCATGTCTGCGTT 60.108 55.000 0.00 0.00 38.86 4.84
3933 4260 1.002366 GCTCTACCATGTCTGCGTTG 58.998 55.000 0.00 0.00 0.00 4.10
3934 4261 1.645034 CTCTACCATGTCTGCGTTGG 58.355 55.000 0.00 0.00 0.00 3.77
3935 4262 0.973632 TCTACCATGTCTGCGTTGGT 59.026 50.000 0.00 0.00 36.72 3.67
3936 4263 2.165641 CTCTACCATGTCTGCGTTGGTA 59.834 50.000 0.00 0.00 34.38 3.25
3937 4264 2.540515 CTACCATGTCTGCGTTGGTAG 58.459 52.381 12.48 12.48 43.83 3.18
3938 4265 0.673644 ACCATGTCTGCGTTGGTAGC 60.674 55.000 0.00 0.00 0.00 3.58
3939 4266 1.369091 CCATGTCTGCGTTGGTAGCC 61.369 60.000 0.00 0.00 0.00 3.93
3940 4267 0.391661 CATGTCTGCGTTGGTAGCCT 60.392 55.000 0.00 0.00 0.00 4.58
3941 4268 0.324943 ATGTCTGCGTTGGTAGCCTT 59.675 50.000 0.00 0.00 0.00 4.35
3942 4269 0.602638 TGTCTGCGTTGGTAGCCTTG 60.603 55.000 0.00 0.00 0.00 3.61
3943 4270 1.003839 TCTGCGTTGGTAGCCTTGG 60.004 57.895 0.00 0.00 0.00 3.61
3944 4271 1.003839 CTGCGTTGGTAGCCTTGGA 60.004 57.895 0.00 0.00 0.00 3.53
3945 4272 1.003839 TGCGTTGGTAGCCTTGGAG 60.004 57.895 0.00 0.00 0.00 3.86
3946 4273 1.003718 GCGTTGGTAGCCTTGGAGT 60.004 57.895 0.00 0.00 0.00 3.85
3947 4274 0.605589 GCGTTGGTAGCCTTGGAGTT 60.606 55.000 0.00 0.00 0.00 3.01
3948 4275 1.892209 CGTTGGTAGCCTTGGAGTTT 58.108 50.000 0.00 0.00 0.00 2.66
3949 4276 1.804748 CGTTGGTAGCCTTGGAGTTTC 59.195 52.381 0.00 0.00 0.00 2.78
3950 4277 2.550208 CGTTGGTAGCCTTGGAGTTTCT 60.550 50.000 0.00 0.00 0.00 2.52
3951 4278 3.306502 CGTTGGTAGCCTTGGAGTTTCTA 60.307 47.826 0.00 0.00 0.00 2.10
3952 4279 4.648651 GTTGGTAGCCTTGGAGTTTCTAA 58.351 43.478 0.00 0.00 0.00 2.10
3953 4280 4.553330 TGGTAGCCTTGGAGTTTCTAAG 57.447 45.455 0.00 0.00 35.11 2.18
3954 4281 4.164981 TGGTAGCCTTGGAGTTTCTAAGA 58.835 43.478 4.04 0.00 37.16 2.10
3955 4282 4.020485 TGGTAGCCTTGGAGTTTCTAAGAC 60.020 45.833 4.04 0.00 37.16 3.01
3956 4283 4.223255 GGTAGCCTTGGAGTTTCTAAGACT 59.777 45.833 4.04 0.85 37.16 3.24
3957 4284 4.984146 AGCCTTGGAGTTTCTAAGACTT 57.016 40.909 4.04 0.00 37.16 3.01
3958 4285 5.311844 AGCCTTGGAGTTTCTAAGACTTT 57.688 39.130 4.04 0.00 37.16 2.66
3959 4286 5.696030 AGCCTTGGAGTTTCTAAGACTTTT 58.304 37.500 4.04 0.00 37.16 2.27
3960 4287 5.532779 AGCCTTGGAGTTTCTAAGACTTTTG 59.467 40.000 4.04 0.00 37.16 2.44
3961 4288 5.278512 GCCTTGGAGTTTCTAAGACTTTTGG 60.279 44.000 4.04 0.00 37.16 3.28
3962 4289 6.062095 CCTTGGAGTTTCTAAGACTTTTGGA 58.938 40.000 4.04 0.00 37.16 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 85 0.393402 GGGGGAAATTACGCGAAGGT 60.393 55.000 15.93 0.00 0.00 3.50
116 117 0.605319 GACCAATCAAGACACGGCCA 60.605 55.000 2.24 0.00 0.00 5.36
117 118 0.321653 AGACCAATCAAGACACGGCC 60.322 55.000 0.00 0.00 0.00 6.13
124 125 6.293004 ACCAAAACAAAAGACCAATCAAGA 57.707 33.333 0.00 0.00 0.00 3.02
127 128 7.255801 GGATCTACCAAAACAAAAGACCAATCA 60.256 37.037 0.00 0.00 38.79 2.57
133 134 5.449304 CACGGATCTACCAAAACAAAAGAC 58.551 41.667 0.00 0.00 38.90 3.01
135 136 4.794169 CCACGGATCTACCAAAACAAAAG 58.206 43.478 0.00 0.00 38.90 2.27
175 322 3.098555 CCCTACCGCAATCAACGC 58.901 61.111 0.00 0.00 0.00 4.84
177 324 1.077716 AGGCCCTACCGCAATCAAC 60.078 57.895 0.00 0.00 46.52 3.18
178 325 1.077787 CAGGCCCTACCGCAATCAA 60.078 57.895 0.00 0.00 46.52 2.57
180 327 1.819632 CACAGGCCCTACCGCAATC 60.820 63.158 0.00 0.00 46.52 2.67
181 328 2.272146 CACAGGCCCTACCGCAAT 59.728 61.111 0.00 0.00 46.52 3.56
199 346 1.869503 CACAACAAATCTACGCGCAG 58.130 50.000 5.73 1.58 0.00 5.18
243 390 1.536072 GGCACGCATCTAATCGACAGA 60.536 52.381 1.32 1.32 0.00 3.41
275 422 2.037053 ATCGAGGCTGACGATCCAG 58.963 57.895 5.37 0.00 45.32 3.86
305 452 8.910340 CGACTAGACGATCCTAACGAATCACG 62.910 50.000 9.02 0.00 40.77 4.35
337 484 5.099042 ACAACAAAATACCTCGCCTAGAT 57.901 39.130 0.00 0.00 0.00 1.98
340 487 4.004982 GGAACAACAAAATACCTCGCCTA 58.995 43.478 0.00 0.00 0.00 3.93
368 516 2.796617 GCATCAACACACACGCGC 60.797 61.111 5.73 0.00 0.00 6.86
371 519 1.081906 GCCTGCATCAACACACACG 60.082 57.895 0.00 0.00 0.00 4.49
377 525 1.164411 CCGTTTAGCCTGCATCAACA 58.836 50.000 0.00 0.00 0.00 3.33
379 527 1.003118 AGACCGTTTAGCCTGCATCAA 59.997 47.619 0.00 0.00 0.00 2.57
409 557 5.391310 CCTTGAGAAAATGTCAGTCGATTGG 60.391 44.000 8.17 0.00 0.00 3.16
421 569 5.824904 ATCGATGGAACCTTGAGAAAATG 57.175 39.130 0.00 0.00 0.00 2.32
434 582 4.071423 TGCACTTTTCTGAATCGATGGAA 58.929 39.130 0.00 1.61 0.00 3.53
593 742 1.857965 TCTGTAGACATCAGGCTGCT 58.142 50.000 10.34 3.44 34.15 4.24
660 810 6.071728 AGCATAAAACTCATCCTGGAACAAAG 60.072 38.462 0.00 0.00 38.70 2.77
666 816 5.957771 ACTAGCATAAAACTCATCCTGGA 57.042 39.130 0.00 0.00 0.00 3.86
696 846 6.597280 ACAAGTTATTTCAAAGCTGGCAAAAA 59.403 30.769 0.00 0.00 0.00 1.94
776 926 8.723942 AAGTAACCTAGAACATAAAGCATCAG 57.276 34.615 0.00 0.00 0.00 2.90
777 927 8.946085 CAAAGTAACCTAGAACATAAAGCATCA 58.054 33.333 0.00 0.00 0.00 3.07
780 930 7.455058 TCCAAAGTAACCTAGAACATAAAGCA 58.545 34.615 0.00 0.00 0.00 3.91
816 966 6.017026 CACTGAGTAACTTCACTACTGACTCA 60.017 42.308 0.00 0.00 29.62 3.41
837 987 2.159517 GGTTTATTGCCTCGAAGCACTG 60.160 50.000 8.54 0.00 43.97 3.66
838 988 2.084546 GGTTTATTGCCTCGAAGCACT 58.915 47.619 8.54 6.12 43.97 4.40
839 989 2.084546 AGGTTTATTGCCTCGAAGCAC 58.915 47.619 8.54 0.00 43.97 4.40
840 990 2.083774 CAGGTTTATTGCCTCGAAGCA 58.916 47.619 4.15 4.15 42.17 3.91
841 991 2.084546 ACAGGTTTATTGCCTCGAAGC 58.915 47.619 0.00 0.00 33.31 3.86
1111 1277 2.810274 ACACTGCTAAGATGCACACAAG 59.190 45.455 0.00 0.00 38.12 3.16
1147 1313 7.151999 ACACAAAGTTGTAAGTTCACATGAA 57.848 32.000 0.00 0.00 39.91 2.57
1156 1322 9.263538 TGAATTACGATACACAAAGTTGTAAGT 57.736 29.630 0.00 0.00 39.91 2.24
1160 1326 6.708949 AGGTGAATTACGATACACAAAGTTGT 59.291 34.615 0.00 0.00 43.36 3.32
1204 1381 1.202855 CCTTGATGGACATAGCCCTGG 60.203 57.143 0.00 0.00 38.35 4.45
1284 1461 7.990886 AGTGGAGTTATAGTCACACAAAGAAAA 59.009 33.333 0.00 0.00 33.01 2.29
1293 1470 5.084519 AGTTCCAGTGGAGTTATAGTCACA 58.915 41.667 12.67 0.00 31.21 3.58
1358 1535 9.258629 TCAACAGAATGAATTCCATTTAAGGAT 57.741 29.630 2.27 0.00 45.00 3.24
1394 1592 6.260050 GGTCAAGAACAGTGAATGAAACTGTA 59.740 38.462 9.44 0.00 32.56 2.74
1417 1615 6.554982 TGCCATAGTGATACATTCTCTTAGGT 59.445 38.462 0.00 0.00 30.95 3.08
1420 1618 7.603180 ACTGCCATAGTGATACATTCTCTTA 57.397 36.000 0.00 0.00 38.49 2.10
1439 1637 0.590195 CTGACAAGACAGCAACTGCC 59.410 55.000 0.00 0.00 43.38 4.85
1505 1708 9.689501 GGAAGACTATATGCTACTAGATACCTT 57.310 37.037 0.00 0.00 0.00 3.50
1506 1709 9.064602 AGGAAGACTATATGCTACTAGATACCT 57.935 37.037 0.00 0.00 0.00 3.08
1507 1710 9.116067 CAGGAAGACTATATGCTACTAGATACC 57.884 40.741 0.00 0.00 0.00 2.73
1571 1774 1.290009 GCAGTGGTTGTTGATGGCC 59.710 57.895 0.00 0.00 0.00 5.36
1588 1791 6.690194 ATAGAAGAACTGATGGTCAATTGC 57.310 37.500 0.00 0.00 0.00 3.56
1827 2030 0.796927 GTTCAGCACTAACCTTCGGC 59.203 55.000 0.00 0.00 0.00 5.54
1884 2087 7.765307 TGACAAGATCCATCTTTCAATAAAGC 58.235 34.615 0.00 0.00 44.28 3.51
1982 2189 8.985315 AGTTGATCCTTAATATCAAATGCAGA 57.015 30.769 12.50 0.00 43.12 4.26
2074 2289 7.530426 AAGATAGGTTCAGCAACAGATTTTT 57.470 32.000 0.00 0.00 33.70 1.94
2075 2290 7.530426 AAAGATAGGTTCAGCAACAGATTTT 57.470 32.000 0.00 0.00 33.70 1.82
2078 2293 6.479884 AGAAAAGATAGGTTCAGCAACAGAT 58.520 36.000 0.00 0.00 33.70 2.90
2107 2322 7.001674 ACAAAGTTGAACCTATAATGTGGTGA 58.998 34.615 0.00 0.00 36.57 4.02
2133 2353 7.229907 GGAAGATTAAAAACAACAGGTAGACCA 59.770 37.037 0.66 0.00 38.89 4.02
2258 2481 3.009363 TCCATTGCTCCTTCAGAATGTCA 59.991 43.478 0.00 0.00 37.40 3.58
2460 2731 3.415212 AGTGTCCACCAAATCACATCAG 58.585 45.455 0.00 0.00 33.84 2.90
2520 2791 3.069443 TCATGACAAGACACACAGCTACA 59.931 43.478 0.00 0.00 0.00 2.74
2523 2794 2.487934 GTCATGACAAGACACACAGCT 58.512 47.619 21.07 0.00 36.06 4.24
2528 2799 3.631686 CCAAAAGGTCATGACAAGACACA 59.368 43.478 26.47 0.00 37.74 3.72
2532 2803 2.238521 GGCCAAAAGGTCATGACAAGA 58.761 47.619 26.47 0.00 0.00 3.02
2582 2853 4.151883 AGGTAACACCAAATGACTGCATT 58.848 39.130 0.00 0.00 41.95 3.56
2583 2854 3.758554 GAGGTAACACCAAATGACTGCAT 59.241 43.478 0.00 0.00 41.95 3.96
2642 2913 3.486383 TGAGCCCAAAAGAAGTAACTGG 58.514 45.455 0.00 0.00 0.00 4.00
2778 3084 3.437213 TGGGAGTTAGTAGTGCAGCTAA 58.563 45.455 0.00 0.00 0.00 3.09
2815 3121 2.816087 GCAGATTGAAAGCAGAACCTGA 59.184 45.455 0.00 0.00 32.44 3.86
3010 3316 4.035278 GAGATAGTTTCTCGGGACAGTG 57.965 50.000 0.00 0.00 41.51 3.66
3161 3467 6.095440 GGAGAACCAACACTACCGTAGTTATA 59.905 42.308 8.56 0.00 34.76 0.98
3196 3506 1.294041 TTCCATCCACAGGCACCATA 58.706 50.000 0.00 0.00 0.00 2.74
3205 3515 4.648762 ACAGAACAAACATTTCCATCCACA 59.351 37.500 0.00 0.00 0.00 4.17
3210 3520 3.244181 GGCCACAGAACAAACATTTCCAT 60.244 43.478 0.00 0.00 0.00 3.41
3274 3584 3.444388 ACATAACCAGAGAGGAGACGAAC 59.556 47.826 0.00 0.00 41.22 3.95
3275 3585 3.698289 ACATAACCAGAGAGGAGACGAA 58.302 45.455 0.00 0.00 41.22 3.85
3276 3586 3.367646 ACATAACCAGAGAGGAGACGA 57.632 47.619 0.00 0.00 41.22 4.20
3277 3587 4.641094 AGTAACATAACCAGAGAGGAGACG 59.359 45.833 0.00 0.00 41.22 4.18
3310 3620 0.402504 ACAGCCAATCCGGTACCAAA 59.597 50.000 13.54 0.00 36.97 3.28
3361 3676 1.133181 TGGATGCACCAGAACCAGGA 61.133 55.000 0.00 0.00 44.64 3.86
3407 3724 7.696992 AAATGTACATGGGGTAGTTACAAAG 57.303 36.000 9.63 0.00 31.13 2.77
3418 3735 6.156083 ACCTTAATGGAAAAATGTACATGGGG 59.844 38.462 9.63 1.63 39.71 4.96
3421 3738 9.703892 TTCAACCTTAATGGAAAAATGTACATG 57.296 29.630 9.63 0.00 39.71 3.21
3447 3774 8.186163 GTGGCACAGTTTTTAACTAAAGTTAGT 58.814 33.333 13.86 0.00 42.58 2.24
3484 3811 3.518303 ACAAATGGTACTACTCCCTCCAC 59.482 47.826 0.00 0.00 0.00 4.02
3508 3835 4.505191 CGTTCCCATCATTTTCATGCAATC 59.495 41.667 0.00 0.00 0.00 2.67
3509 3836 4.435425 CGTTCCCATCATTTTCATGCAAT 58.565 39.130 0.00 0.00 0.00 3.56
3510 3837 3.847542 CGTTCCCATCATTTTCATGCAA 58.152 40.909 0.00 0.00 0.00 4.08
3511 3838 2.417107 GCGTTCCCATCATTTTCATGCA 60.417 45.455 0.00 0.00 0.00 3.96
3512 3839 2.159198 AGCGTTCCCATCATTTTCATGC 60.159 45.455 0.00 0.00 0.00 4.06
3513 3840 3.788333 AGCGTTCCCATCATTTTCATG 57.212 42.857 0.00 0.00 0.00 3.07
3514 3841 4.339247 CCTTAGCGTTCCCATCATTTTCAT 59.661 41.667 0.00 0.00 0.00 2.57
3515 3842 3.694072 CCTTAGCGTTCCCATCATTTTCA 59.306 43.478 0.00 0.00 0.00 2.69
3516 3843 3.066760 CCCTTAGCGTTCCCATCATTTTC 59.933 47.826 0.00 0.00 0.00 2.29
3517 3844 3.023832 CCCTTAGCGTTCCCATCATTTT 58.976 45.455 0.00 0.00 0.00 1.82
3518 3845 2.025321 ACCCTTAGCGTTCCCATCATTT 60.025 45.455 0.00 0.00 0.00 2.32
3519 3846 1.564348 ACCCTTAGCGTTCCCATCATT 59.436 47.619 0.00 0.00 0.00 2.57
3520 3847 1.213296 ACCCTTAGCGTTCCCATCAT 58.787 50.000 0.00 0.00 0.00 2.45
3521 3848 0.988832 AACCCTTAGCGTTCCCATCA 59.011 50.000 0.00 0.00 0.00 3.07
3522 3849 2.994186 TAACCCTTAGCGTTCCCATC 57.006 50.000 0.00 0.00 0.00 3.51
3563 3890 2.838202 CCTAGGTCAAAAGGGCTACAGA 59.162 50.000 0.00 0.00 0.00 3.41
3564 3891 2.572104 ACCTAGGTCAAAAGGGCTACAG 59.428 50.000 9.21 0.00 37.18 2.74
3602 3929 9.057911 CAATTAATATGGGAAGGAGGGAGTATA 57.942 37.037 0.00 0.00 0.00 1.47
3603 3930 7.744068 TCAATTAATATGGGAAGGAGGGAGTAT 59.256 37.037 0.00 0.00 0.00 2.12
3606 3933 6.454223 TCAATTAATATGGGAAGGAGGGAG 57.546 41.667 0.00 0.00 0.00 4.30
3634 3961 5.410924 GCGTCATGCTAGATACATCCATAA 58.589 41.667 0.00 0.00 41.73 1.90
3635 3962 4.998788 GCGTCATGCTAGATACATCCATA 58.001 43.478 0.00 0.00 41.73 2.74
3649 3976 0.247814 CGTCCATTTCAGCGTCATGC 60.248 55.000 0.00 0.00 46.98 4.06
3650 3977 1.078709 ACGTCCATTTCAGCGTCATG 58.921 50.000 0.00 0.00 31.54 3.07
3651 3978 2.665649 TACGTCCATTTCAGCGTCAT 57.334 45.000 0.00 0.00 38.56 3.06
3652 3979 2.165641 AGATACGTCCATTTCAGCGTCA 59.834 45.455 0.00 0.00 38.56 4.35
3653 3980 2.810650 AGATACGTCCATTTCAGCGTC 58.189 47.619 0.00 0.00 38.56 5.19
3654 3981 2.930040 CAAGATACGTCCATTTCAGCGT 59.070 45.455 0.00 0.00 40.76 5.07
3655 3982 2.930040 ACAAGATACGTCCATTTCAGCG 59.070 45.455 0.00 0.00 0.00 5.18
3656 3983 4.651994 CAACAAGATACGTCCATTTCAGC 58.348 43.478 0.00 0.00 0.00 4.26
3657 3984 4.154015 TGCAACAAGATACGTCCATTTCAG 59.846 41.667 0.00 0.00 0.00 3.02
3658 3985 4.068599 TGCAACAAGATACGTCCATTTCA 58.931 39.130 0.00 0.00 0.00 2.69
3659 3986 4.678509 TGCAACAAGATACGTCCATTTC 57.321 40.909 0.00 0.00 0.00 2.17
3660 3987 4.142403 CCATGCAACAAGATACGTCCATTT 60.142 41.667 0.00 0.00 0.00 2.32
3661 3988 3.378112 CCATGCAACAAGATACGTCCATT 59.622 43.478 0.00 0.00 0.00 3.16
3662 3989 2.945008 CCATGCAACAAGATACGTCCAT 59.055 45.455 0.00 0.00 0.00 3.41
3663 3990 2.027653 TCCATGCAACAAGATACGTCCA 60.028 45.455 0.00 0.00 0.00 4.02
3664 3991 2.627945 TCCATGCAACAAGATACGTCC 58.372 47.619 0.00 0.00 0.00 4.79
3665 3992 3.623060 ACATCCATGCAACAAGATACGTC 59.377 43.478 0.00 0.00 0.00 4.34
3666 3993 3.609853 ACATCCATGCAACAAGATACGT 58.390 40.909 0.00 0.00 0.00 3.57
3667 3994 5.698089 AGATACATCCATGCAACAAGATACG 59.302 40.000 0.00 0.00 0.00 3.06
3668 3995 7.148507 GCTAGATACATCCATGCAACAAGATAC 60.149 40.741 0.00 0.00 0.00 2.24
3669 3996 6.875726 GCTAGATACATCCATGCAACAAGATA 59.124 38.462 0.00 0.00 0.00 1.98
3670 3997 5.704515 GCTAGATACATCCATGCAACAAGAT 59.295 40.000 0.00 0.00 0.00 2.40
3671 3998 5.059161 GCTAGATACATCCATGCAACAAGA 58.941 41.667 0.00 0.00 0.00 3.02
3672 3999 4.818005 TGCTAGATACATCCATGCAACAAG 59.182 41.667 0.00 0.00 0.00 3.16
3673 4000 4.779696 TGCTAGATACATCCATGCAACAA 58.220 39.130 0.00 0.00 0.00 2.83
3674 4001 4.420522 TGCTAGATACATCCATGCAACA 57.579 40.909 0.00 0.00 0.00 3.33
3675 4002 4.999311 TCATGCTAGATACATCCATGCAAC 59.001 41.667 0.00 0.00 34.72 4.17
3676 4003 4.999311 GTCATGCTAGATACATCCATGCAA 59.001 41.667 0.00 0.00 34.72 4.08
3677 4004 4.572909 GTCATGCTAGATACATCCATGCA 58.427 43.478 0.00 0.00 34.72 3.96
3678 4005 3.615937 CGTCATGCTAGATACATCCATGC 59.384 47.826 0.00 0.00 34.72 4.06
3679 4006 3.615937 GCGTCATGCTAGATACATCCATG 59.384 47.826 0.00 0.00 41.73 3.66
3680 4007 3.854666 GCGTCATGCTAGATACATCCAT 58.145 45.455 0.00 0.00 41.73 3.41
3681 4008 3.303881 GCGTCATGCTAGATACATCCA 57.696 47.619 0.00 0.00 41.73 3.41
3693 4020 0.866427 CATCCATCTCAGCGTCATGC 59.134 55.000 0.00 0.00 46.98 4.06
3694 4021 2.235845 ACATCCATCTCAGCGTCATG 57.764 50.000 0.00 0.00 0.00 3.07
3695 4022 3.831333 AGATACATCCATCTCAGCGTCAT 59.169 43.478 0.00 0.00 28.83 3.06
3696 4023 3.225940 AGATACATCCATCTCAGCGTCA 58.774 45.455 0.00 0.00 28.83 4.35
3697 4024 3.932545 AGATACATCCATCTCAGCGTC 57.067 47.619 0.00 0.00 28.83 5.19
3698 4025 5.718146 CATAAGATACATCCATCTCAGCGT 58.282 41.667 0.00 0.00 34.08 5.07
3699 4026 4.565962 GCATAAGATACATCCATCTCAGCG 59.434 45.833 0.00 0.00 34.08 5.18
3700 4027 5.732633 AGCATAAGATACATCCATCTCAGC 58.267 41.667 0.00 0.00 34.08 4.26
3701 4028 8.291191 TCTAGCATAAGATACATCCATCTCAG 57.709 38.462 0.00 0.00 34.08 3.35
3702 4029 8.835550 ATCTAGCATAAGATACATCCATCTCA 57.164 34.615 0.00 0.00 34.08 3.27
3708 4035 9.474920 GCTGAATATCTAGCATAAGATACATCC 57.525 37.037 5.81 0.00 40.40 3.51
3728 4055 9.749340 TCCAGATCATAATAATTGATGCTGAAT 57.251 29.630 0.00 0.00 34.03 2.57
3729 4056 9.749340 ATCCAGATCATAATAATTGATGCTGAA 57.251 29.630 0.00 0.00 34.03 3.02
3756 4083 9.897744 CATAATAATTAACGCTCAAATGGATGT 57.102 29.630 0.00 0.00 0.00 3.06
3759 4086 9.554395 TCTCATAATAATTAACGCTCAAATGGA 57.446 29.630 0.00 0.00 0.00 3.41
3760 4087 9.599322 GTCTCATAATAATTAACGCTCAAATGG 57.401 33.333 0.00 0.00 0.00 3.16
3761 4088 9.306280 CGTCTCATAATAATTAACGCTCAAATG 57.694 33.333 0.00 0.00 0.00 2.32
3762 4089 8.495949 CCGTCTCATAATAATTAACGCTCAAAT 58.504 33.333 0.00 0.00 0.00 2.32
3763 4090 7.707464 TCCGTCTCATAATAATTAACGCTCAAA 59.293 33.333 0.00 0.00 0.00 2.69
3764 4091 7.204604 TCCGTCTCATAATAATTAACGCTCAA 58.795 34.615 0.00 0.00 0.00 3.02
3765 4092 6.741109 TCCGTCTCATAATAATTAACGCTCA 58.259 36.000 0.00 0.00 0.00 4.26
3766 4093 6.308282 CCTCCGTCTCATAATAATTAACGCTC 59.692 42.308 0.00 0.00 0.00 5.03
3767 4094 6.157211 CCTCCGTCTCATAATAATTAACGCT 58.843 40.000 0.00 0.00 0.00 5.07
3768 4095 5.347907 CCCTCCGTCTCATAATAATTAACGC 59.652 44.000 0.00 0.00 0.00 4.84
3769 4096 6.684686 TCCCTCCGTCTCATAATAATTAACG 58.315 40.000 0.00 0.00 0.00 3.18
3770 4097 7.668492 ACTCCCTCCGTCTCATAATAATTAAC 58.332 38.462 0.00 0.00 0.00 2.01
3771 4098 7.850935 ACTCCCTCCGTCTCATAATAATTAA 57.149 36.000 0.00 0.00 0.00 1.40
3772 4099 9.543231 AATACTCCCTCCGTCTCATAATAATTA 57.457 33.333 0.00 0.00 0.00 1.40
3773 4100 8.437274 AATACTCCCTCCGTCTCATAATAATT 57.563 34.615 0.00 0.00 0.00 1.40
3774 4101 9.716556 ATAATACTCCCTCCGTCTCATAATAAT 57.283 33.333 0.00 0.00 0.00 1.28
3775 4102 9.543231 AATAATACTCCCTCCGTCTCATAATAA 57.457 33.333 0.00 0.00 0.00 1.40
3776 4103 9.543231 AAATAATACTCCCTCCGTCTCATAATA 57.457 33.333 0.00 0.00 0.00 0.98
3777 4104 8.437274 AAATAATACTCCCTCCGTCTCATAAT 57.563 34.615 0.00 0.00 0.00 1.28
3778 4105 7.850935 AAATAATACTCCCTCCGTCTCATAA 57.149 36.000 0.00 0.00 0.00 1.90
3779 4106 7.850935 AAAATAATACTCCCTCCGTCTCATA 57.149 36.000 0.00 0.00 0.00 2.15
3780 4107 6.749036 AAAATAATACTCCCTCCGTCTCAT 57.251 37.500 0.00 0.00 0.00 2.90
3781 4108 7.850935 ATAAAATAATACTCCCTCCGTCTCA 57.149 36.000 0.00 0.00 0.00 3.27
3782 4109 9.557061 AAAATAAAATAATACTCCCTCCGTCTC 57.443 33.333 0.00 0.00 0.00 3.36
3783 4110 9.916360 AAAAATAAAATAATACTCCCTCCGTCT 57.084 29.630 0.00 0.00 0.00 4.18
3839 4166 9.904198 TTTACAAATGGAGATCATTCACATAGA 57.096 29.630 0.00 0.00 44.68 1.98
3842 4169 9.865321 CTTTTTACAAATGGAGATCATTCACAT 57.135 29.630 0.00 0.00 44.68 3.21
3843 4170 9.076781 TCTTTTTACAAATGGAGATCATTCACA 57.923 29.630 0.00 0.00 44.68 3.58
3859 4186 9.751542 TCCGCTTAAATTTTGATCTTTTTACAA 57.248 25.926 0.00 0.00 0.00 2.41
3860 4187 9.187455 GTCCGCTTAAATTTTGATCTTTTTACA 57.813 29.630 0.00 0.00 0.00 2.41
3861 4188 9.406828 AGTCCGCTTAAATTTTGATCTTTTTAC 57.593 29.630 0.00 0.00 0.00 2.01
3862 4189 9.620660 GAGTCCGCTTAAATTTTGATCTTTTTA 57.379 29.630 0.00 0.00 0.00 1.52
3863 4190 7.598869 GGAGTCCGCTTAAATTTTGATCTTTTT 59.401 33.333 0.00 0.00 0.00 1.94
3864 4191 7.090808 GGAGTCCGCTTAAATTTTGATCTTTT 58.909 34.615 0.00 0.00 0.00 2.27
3865 4192 6.621613 GGAGTCCGCTTAAATTTTGATCTTT 58.378 36.000 0.00 0.00 0.00 2.52
3866 4193 5.163754 CGGAGTCCGCTTAAATTTTGATCTT 60.164 40.000 20.50 0.00 41.17 2.40
3867 4194 4.332819 CGGAGTCCGCTTAAATTTTGATCT 59.667 41.667 20.50 0.00 41.17 2.75
3868 4195 4.588278 CGGAGTCCGCTTAAATTTTGATC 58.412 43.478 20.50 0.00 41.17 2.92
3869 4196 4.616181 CGGAGTCCGCTTAAATTTTGAT 57.384 40.909 20.50 0.00 41.17 2.57
3884 4211 3.522553 AGAATTCGGACAAATCGGAGTC 58.477 45.455 0.00 0.00 35.76 3.36
3885 4212 3.611766 AGAATTCGGACAAATCGGAGT 57.388 42.857 0.00 0.00 35.76 3.85
3886 4213 4.430007 TGTAGAATTCGGACAAATCGGAG 58.570 43.478 12.24 0.00 35.76 4.63
3887 4214 4.459390 TGTAGAATTCGGACAAATCGGA 57.541 40.909 12.24 0.00 32.69 4.55
3888 4215 5.539582 TTTGTAGAATTCGGACAAATCGG 57.460 39.130 25.41 0.00 37.97 4.18
3898 4225 4.444720 GGTAGAGCCGATTTGTAGAATTCG 59.555 45.833 9.27 9.27 35.61 3.34
3899 4226 5.357257 TGGTAGAGCCGATTTGTAGAATTC 58.643 41.667 0.00 0.00 41.21 2.17
3900 4227 5.353394 TGGTAGAGCCGATTTGTAGAATT 57.647 39.130 0.00 0.00 41.21 2.17
3901 4228 5.163301 ACATGGTAGAGCCGATTTGTAGAAT 60.163 40.000 0.00 0.00 41.21 2.40
3902 4229 4.161565 ACATGGTAGAGCCGATTTGTAGAA 59.838 41.667 0.00 0.00 41.21 2.10
3903 4230 3.704566 ACATGGTAGAGCCGATTTGTAGA 59.295 43.478 0.00 0.00 41.21 2.59
3904 4231 4.051922 GACATGGTAGAGCCGATTTGTAG 58.948 47.826 0.00 0.00 41.21 2.74
3905 4232 3.704566 AGACATGGTAGAGCCGATTTGTA 59.295 43.478 0.00 0.00 41.21 2.41
3906 4233 2.501723 AGACATGGTAGAGCCGATTTGT 59.498 45.455 0.00 0.00 41.21 2.83
3907 4234 2.868583 CAGACATGGTAGAGCCGATTTG 59.131 50.000 0.00 0.00 41.21 2.32
3908 4235 2.743183 GCAGACATGGTAGAGCCGATTT 60.743 50.000 0.00 0.00 41.21 2.17
3909 4236 1.202580 GCAGACATGGTAGAGCCGATT 60.203 52.381 0.00 0.00 41.21 3.34
3910 4237 0.390860 GCAGACATGGTAGAGCCGAT 59.609 55.000 0.00 0.00 41.21 4.18
3911 4238 1.816537 GCAGACATGGTAGAGCCGA 59.183 57.895 0.00 0.00 41.21 5.54
3912 4239 1.589993 CGCAGACATGGTAGAGCCG 60.590 63.158 0.00 0.00 41.21 5.52
3913 4240 0.108138 AACGCAGACATGGTAGAGCC 60.108 55.000 0.00 0.00 37.90 4.70
3914 4241 1.002366 CAACGCAGACATGGTAGAGC 58.998 55.000 0.00 0.00 0.00 4.09
3915 4242 1.066858 ACCAACGCAGACATGGTAGAG 60.067 52.381 0.00 0.00 45.37 2.43
3916 4243 0.973632 ACCAACGCAGACATGGTAGA 59.026 50.000 0.00 0.00 45.37 2.59
3917 4244 2.665649 TACCAACGCAGACATGGTAG 57.334 50.000 0.00 0.00 45.37 3.18
3918 4245 1.404986 GCTACCAACGCAGACATGGTA 60.405 52.381 0.00 4.05 45.37 3.25
3920 4247 1.369091 GGCTACCAACGCAGACATGG 61.369 60.000 0.00 0.00 40.16 3.66
3921 4248 0.391661 AGGCTACCAACGCAGACATG 60.392 55.000 0.00 0.00 0.00 3.21
3922 4249 0.324943 AAGGCTACCAACGCAGACAT 59.675 50.000 0.00 0.00 0.00 3.06
3923 4250 0.602638 CAAGGCTACCAACGCAGACA 60.603 55.000 0.00 0.00 0.00 3.41
3924 4251 1.298859 CCAAGGCTACCAACGCAGAC 61.299 60.000 0.00 0.00 0.00 3.51
3925 4252 1.003839 CCAAGGCTACCAACGCAGA 60.004 57.895 0.00 0.00 0.00 4.26
3926 4253 1.003839 TCCAAGGCTACCAACGCAG 60.004 57.895 0.00 0.00 0.00 5.18
3927 4254 1.003839 CTCCAAGGCTACCAACGCA 60.004 57.895 0.00 0.00 0.00 5.24
3928 4255 0.605589 AACTCCAAGGCTACCAACGC 60.606 55.000 0.00 0.00 0.00 4.84
3929 4256 1.804748 GAAACTCCAAGGCTACCAACG 59.195 52.381 0.00 0.00 0.00 4.10
3930 4257 3.141767 AGAAACTCCAAGGCTACCAAC 57.858 47.619 0.00 0.00 0.00 3.77
3931 4258 4.595781 TCTTAGAAACTCCAAGGCTACCAA 59.404 41.667 0.00 0.00 0.00 3.67
3932 4259 4.020485 GTCTTAGAAACTCCAAGGCTACCA 60.020 45.833 0.00 0.00 0.00 3.25
3933 4260 4.223255 AGTCTTAGAAACTCCAAGGCTACC 59.777 45.833 0.00 0.00 32.64 3.18
3934 4261 5.408880 AGTCTTAGAAACTCCAAGGCTAC 57.591 43.478 0.00 0.00 32.64 3.58
3935 4262 6.435292 AAAGTCTTAGAAACTCCAAGGCTA 57.565 37.500 0.00 0.00 33.24 3.93
3936 4263 4.984146 AAGTCTTAGAAACTCCAAGGCT 57.016 40.909 0.00 0.00 35.82 4.58
3937 4264 5.278512 CCAAAAGTCTTAGAAACTCCAAGGC 60.279 44.000 0.00 0.00 0.00 4.35
3938 4265 6.062095 TCCAAAAGTCTTAGAAACTCCAAGG 58.938 40.000 0.00 0.00 0.00 3.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.