Multiple sequence alignment - TraesCS3D01G335900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G335900 chr3D 100.000 4000 0 0 1 4000 447635969 447631970 0.000000e+00 7387.0
1 TraesCS3D01G335900 chr3D 94.643 56 3 0 355 410 555534484 555534429 1.980000e-13 87.9
2 TraesCS3D01G335900 chr3D 92.982 57 2 2 355 410 206172733 206172788 9.210000e-12 82.4
3 TraesCS3D01G335900 chr3A 92.551 1772 66 22 479 2236 589377287 589375568 0.000000e+00 2481.0
4 TraesCS3D01G335900 chr3A 93.976 830 34 6 2259 3085 589374742 589373926 0.000000e+00 1242.0
5 TraesCS3D01G335900 chr3A 87.730 652 37 16 3105 3716 589373939 589373291 0.000000e+00 721.0
6 TraesCS3D01G335900 chr3B 94.330 1499 56 8 1590 3085 586864048 586862576 0.000000e+00 2270.0
7 TraesCS3D01G335900 chr3B 86.767 801 31 29 271 1054 586865435 586864693 0.000000e+00 822.0
8 TraesCS3D01G335900 chr3B 91.234 559 20 5 1062 1591 586864655 586864097 0.000000e+00 734.0
9 TraesCS3D01G335900 chr3B 90.674 386 10 9 3111 3495 586862583 586862223 1.290000e-134 490.0
10 TraesCS3D01G335900 chr3B 88.924 316 17 6 4 316 586865812 586865512 1.360000e-99 374.0
11 TraesCS3D01G335900 chr3B 74.359 351 45 25 507 830 728284077 728283745 1.520000e-19 108.0
12 TraesCS3D01G335900 chr5D 87.041 926 72 25 1590 2484 191906903 191905995 0.000000e+00 1002.0
13 TraesCS3D01G335900 chr5D 87.934 663 44 12 3105 3741 191905432 191904780 0.000000e+00 749.0
14 TraesCS3D01G335900 chr5D 89.453 512 33 10 2483 2990 191905963 191905469 9.440000e-176 627.0
15 TraesCS3D01G335900 chr5D 86.201 558 46 16 1062 1591 191907506 191906952 3.470000e-160 575.0
16 TraesCS3D01G335900 chr5A 86.147 924 69 26 1592 2484 229922394 229923289 0.000000e+00 942.0
17 TraesCS3D01G335900 chr5A 88.117 648 41 12 3120 3741 229923888 229924525 0.000000e+00 737.0
18 TraesCS3D01G335900 chr5A 88.945 597 30 16 2483 3076 229923321 229923884 0.000000e+00 704.0
19 TraesCS3D01G335900 chr5A 85.199 554 39 13 1062 1587 229921801 229922339 2.740000e-146 529.0
20 TraesCS3D01G335900 chr5A 93.103 145 4 4 910 1053 229921498 229921637 1.460000e-49 207.0
21 TraesCS3D01G335900 chr5A 92.982 57 2 2 355 410 25130229 25130284 9.210000e-12 82.4
22 TraesCS3D01G335900 chr5B 89.786 607 40 9 2483 3085 196240441 196239853 0.000000e+00 758.0
23 TraesCS3D01G335900 chr5B 84.110 837 65 26 1590 2405 196245656 196244867 0.000000e+00 747.0
24 TraesCS3D01G335900 chr5B 87.121 660 42 15 3110 3743 196239861 196239219 0.000000e+00 708.0
25 TraesCS3D01G335900 chr5B 91.453 351 27 3 1242 1590 196246055 196245706 2.800000e-131 479.0
26 TraesCS3D01G335900 chr5B 92.126 127 9 1 914 1040 196253598 196253473 1.140000e-40 178.0
27 TraesCS3D01G335900 chr5B 87.288 118 11 3 1062 1177 196253030 196252915 9.020000e-27 132.0
28 TraesCS3D01G335900 chr6D 84.925 398 47 7 476 871 51989455 51989841 1.350000e-104 390.0
29 TraesCS3D01G335900 chr6D 73.138 376 54 33 480 827 119199013 119199369 1.530000e-14 91.6
30 TraesCS3D01G335900 chr6D 92.982 57 2 2 355 410 378804328 378804273 9.210000e-12 82.4
31 TraesCS3D01G335900 chr6D 76.048 167 19 11 480 640 386197117 386197268 2.580000e-07 67.6
32 TraesCS3D01G335900 chr6B 84.615 403 41 7 478 871 118895622 118896012 8.110000e-102 381.0
33 TraesCS3D01G335900 chr6A 92.308 117 8 1 476 592 62925068 62925183 8.890000e-37 165.0
34 TraesCS3D01G335900 chr6A 92.308 117 8 1 476 592 62928711 62928826 8.890000e-37 165.0
35 TraesCS3D01G335900 chr6A 75.072 349 46 24 507 830 596778687 596778355 1.510000e-24 124.0
36 TraesCS3D01G335900 chr4B 74.212 349 49 25 507 830 497377724 497377392 1.520000e-19 108.0
37 TraesCS3D01G335900 chr4D 72.922 373 60 24 480 827 481022427 481022783 1.530000e-14 91.6
38 TraesCS3D01G335900 chr4D 92.982 57 2 2 355 410 490887713 490887768 9.210000e-12 82.4
39 TraesCS3D01G335900 chrUn 92.982 57 2 2 355 410 345163480 345163535 9.210000e-12 82.4
40 TraesCS3D01G335900 chr2A 92.727 55 4 0 356 410 303670717 303670771 3.310000e-11 80.5
41 TraesCS3D01G335900 chr7A 93.878 49 3 0 356 404 376783917 376783869 1.540000e-09 75.0
42 TraesCS3D01G335900 chr4A 89.286 56 6 0 3744 3799 24553551 24553496 1.990000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G335900 chr3D 447631970 447635969 3999 True 7387.000000 7387 100.00000 1 4000 1 chr3D.!!$R1 3999
1 TraesCS3D01G335900 chr3A 589373291 589377287 3996 True 1481.333333 2481 91.41900 479 3716 3 chr3A.!!$R1 3237
2 TraesCS3D01G335900 chr3B 586862223 586865812 3589 True 938.000000 2270 90.38580 4 3495 5 chr3B.!!$R2 3491
3 TraesCS3D01G335900 chr5D 191904780 191907506 2726 True 738.250000 1002 87.65725 1062 3741 4 chr5D.!!$R1 2679
4 TraesCS3D01G335900 chr5A 229921498 229924525 3027 False 623.800000 942 88.30220 910 3741 5 chr5A.!!$F2 2831
5 TraesCS3D01G335900 chr5B 196239219 196240441 1222 True 733.000000 758 88.45350 2483 3743 2 chr5B.!!$R1 1260
6 TraesCS3D01G335900 chr5B 196244867 196246055 1188 True 613.000000 747 87.78150 1242 2405 2 chr5B.!!$R2 1163

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
895 1067 0.033504 TCCTCTCTCACACCGTTTGC 59.966 55.000 0.0 0.0 0.0 3.68 F
896 1068 0.249868 CCTCTCTCACACCGTTTGCA 60.250 55.000 0.0 0.0 0.0 4.08 F
898 1070 0.750249 TCTCTCACACCGTTTGCAGA 59.250 50.000 0.0 0.0 0.0 4.26 F
899 1071 1.344438 TCTCTCACACCGTTTGCAGAT 59.656 47.619 0.0 0.0 0.0 2.90 F
2714 4014 0.780637 TGGATGCCTTGGGTTTGGTA 59.219 50.000 0.0 0.0 0.0 3.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1696 2116 1.679640 GCCCCCAAATGCATCAAAAGG 60.680 52.381 0.00 0.0 0.00 3.11 R
2352 3607 3.254060 CACTCAACGGTAGACTCCAATG 58.746 50.000 0.00 0.0 0.00 2.82 R
2440 3703 4.732784 CATGGGGAACAAAAACATAGACG 58.267 43.478 0.00 0.0 0.00 4.18 R
2806 4106 5.936956 GGAAGCAGCAGAATATAGCTTACAT 59.063 40.000 0.00 0.0 44.73 2.29 R
3934 5279 0.036010 CGTGGCCAGAAAGGATGAGT 60.036 55.000 5.11 0.0 41.22 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 3.313012 TGTTTGGATGTCAGGAGTACG 57.687 47.619 0.00 0.00 0.00 3.67
57 58 7.141363 ACGATGAAAAATCAAGTTTTCCTCTG 58.859 34.615 11.73 10.15 43.76 3.35
85 86 2.806434 TGATGGTGATCAAACAAGGGG 58.194 47.619 0.00 0.00 35.55 4.79
98 99 1.274416 ACAAGGGGCCATCTTCCTCTA 60.274 52.381 4.39 0.00 31.97 2.43
134 135 3.661944 AGCACTCTCTTTGTGATGTCAG 58.338 45.455 0.00 0.00 37.60 3.51
141 142 7.172190 CACTCTCTTTGTGATGTCAGTAAACAT 59.828 37.037 0.00 0.00 42.49 2.71
146 147 5.922739 TGTGATGTCAGTAAACATGTCAC 57.077 39.130 0.00 0.00 39.93 3.67
181 182 3.705604 AGCGGTTTGAAAAACATGTCAG 58.294 40.909 0.00 0.00 0.00 3.51
200 201 7.639113 TGTCAGAATTGTTCCTACAGTTTTT 57.361 32.000 0.00 0.00 34.73 1.94
201 202 7.479980 TGTCAGAATTGTTCCTACAGTTTTTG 58.520 34.615 0.00 0.00 34.73 2.44
205 206 9.364989 CAGAATTGTTCCTACAGTTTTTGAAAA 57.635 29.630 0.00 0.00 34.73 2.29
206 207 9.586435 AGAATTGTTCCTACAGTTTTTGAAAAG 57.414 29.630 0.00 0.00 34.73 2.27
207 208 9.581099 GAATTGTTCCTACAGTTTTTGAAAAGA 57.419 29.630 0.00 0.00 34.73 2.52
210 211 9.936759 TTGTTCCTACAGTTTTTGAAAAGATTT 57.063 25.926 0.00 0.00 35.28 2.17
211 212 9.936759 TGTTCCTACAGTTTTTGAAAAGATTTT 57.063 25.926 0.00 0.00 0.00 1.82
260 261 8.992073 GTTTACCGATAGTACTCCTTTTCAAAA 58.008 33.333 0.00 0.00 0.00 2.44
261 262 8.538409 TTACCGATAGTACTCCTTTTCAAAAC 57.462 34.615 0.00 0.00 0.00 2.43
262 263 6.527423 ACCGATAGTACTCCTTTTCAAAACA 58.473 36.000 0.00 0.00 0.00 2.83
269 307 5.343307 ACTCCTTTTCAAAACACAGCATT 57.657 34.783 0.00 0.00 0.00 3.56
277 315 8.539770 TTTTCAAAACACAGCATTTTTACAGA 57.460 26.923 0.00 0.00 0.00 3.41
289 413 5.855395 GCATTTTTACAGAGAGCAGTTTGAG 59.145 40.000 0.00 0.00 0.00 3.02
317 441 4.871933 TGTCAGCATGTTTACAGAGAGA 57.128 40.909 0.00 0.00 37.40 3.10
318 442 4.560128 TGTCAGCATGTTTACAGAGAGAC 58.440 43.478 0.00 0.00 37.40 3.36
319 443 4.039124 TGTCAGCATGTTTACAGAGAGACA 59.961 41.667 0.00 0.00 37.40 3.41
320 444 4.624882 GTCAGCATGTTTACAGAGAGACAG 59.375 45.833 0.00 0.00 37.40 3.51
321 445 4.524328 TCAGCATGTTTACAGAGAGACAGA 59.476 41.667 0.00 0.00 37.40 3.41
322 446 4.863689 CAGCATGTTTACAGAGAGACAGAG 59.136 45.833 0.00 0.00 0.00 3.35
323 447 4.526262 AGCATGTTTACAGAGAGACAGAGT 59.474 41.667 0.00 0.00 0.00 3.24
324 448 5.712446 AGCATGTTTACAGAGAGACAGAGTA 59.288 40.000 0.00 0.00 0.00 2.59
325 449 5.802956 GCATGTTTACAGAGAGACAGAGTAC 59.197 44.000 0.00 0.00 0.00 2.73
341 465 4.058817 AGAGTACTCCTTTTCAAAGCACG 58.941 43.478 19.38 0.00 34.69 5.34
353 477 2.750712 TCAAAGCACGGCTAAAATACCC 59.249 45.455 0.00 0.00 38.25 3.69
359 483 3.064958 GCACGGCTAAAATACCCTCTTTC 59.935 47.826 0.00 0.00 0.00 2.62
364 488 7.120138 CACGGCTAAAATACCCTCTTTCTAAAA 59.880 37.037 0.00 0.00 0.00 1.52
410 534 3.185594 CAGTTTGAGCACATTTGGCATTG 59.814 43.478 0.00 0.00 0.00 2.82
412 536 4.039004 AGTTTGAGCACATTTGGCATTGTA 59.961 37.500 3.60 0.00 0.00 2.41
416 543 5.649557 TGAGCACATTTGGCATTGTATTAC 58.350 37.500 3.60 0.00 0.00 1.89
459 590 3.372440 AAAAGAATCGGGATTCCTGCT 57.628 42.857 15.79 0.00 46.28 4.24
463 594 1.097547 AATCGGGATTCCTGCTTGCG 61.098 55.000 6.66 0.00 0.00 4.85
464 595 2.947938 ATCGGGATTCCTGCTTGCGG 62.948 60.000 6.66 0.00 0.00 5.69
741 881 2.567049 CGCGAGTCCGTCCTTCTT 59.433 61.111 0.00 0.00 38.24 2.52
812 961 2.811317 GCCGTCGCCACTTCAGAG 60.811 66.667 0.00 0.00 0.00 3.35
831 980 4.900154 CTCAAGGTGAGCTCGTCC 57.100 61.111 16.82 16.82 37.72 4.79
832 981 1.967535 CTCAAGGTGAGCTCGTCCA 59.032 57.895 23.49 7.88 37.72 4.02
833 982 0.108898 CTCAAGGTGAGCTCGTCCAG 60.109 60.000 23.49 17.07 37.72 3.86
834 983 0.539669 TCAAGGTGAGCTCGTCCAGA 60.540 55.000 23.49 18.55 0.00 3.86
835 984 0.318441 CAAGGTGAGCTCGTCCAGAA 59.682 55.000 23.49 0.00 0.00 3.02
848 997 1.537202 GTCCAGAACCAGATGTGCAAC 59.463 52.381 0.00 0.00 37.35 4.17
889 1061 3.685139 TTTCATGTCCTCTCTCACACC 57.315 47.619 0.00 0.00 0.00 4.16
890 1062 1.177401 TCATGTCCTCTCTCACACCG 58.823 55.000 0.00 0.00 0.00 4.94
891 1063 0.891373 CATGTCCTCTCTCACACCGT 59.109 55.000 0.00 0.00 0.00 4.83
892 1064 1.273606 CATGTCCTCTCTCACACCGTT 59.726 52.381 0.00 0.00 0.00 4.44
893 1065 1.410004 TGTCCTCTCTCACACCGTTT 58.590 50.000 0.00 0.00 0.00 3.60
894 1066 1.068588 TGTCCTCTCTCACACCGTTTG 59.931 52.381 0.00 0.00 0.00 2.93
895 1067 0.033504 TCCTCTCTCACACCGTTTGC 59.966 55.000 0.00 0.00 0.00 3.68
896 1068 0.249868 CCTCTCTCACACCGTTTGCA 60.250 55.000 0.00 0.00 0.00 4.08
897 1069 1.143305 CTCTCTCACACCGTTTGCAG 58.857 55.000 0.00 0.00 0.00 4.41
898 1070 0.750249 TCTCTCACACCGTTTGCAGA 59.250 50.000 0.00 0.00 0.00 4.26
899 1071 1.344438 TCTCTCACACCGTTTGCAGAT 59.656 47.619 0.00 0.00 0.00 2.90
900 1072 2.146342 CTCTCACACCGTTTGCAGATT 58.854 47.619 0.00 0.00 0.00 2.40
901 1073 3.006430 TCTCTCACACCGTTTGCAGATTA 59.994 43.478 0.00 0.00 0.00 1.75
902 1074 3.734463 TCTCACACCGTTTGCAGATTAA 58.266 40.909 0.00 0.00 0.00 1.40
903 1075 4.323417 TCTCACACCGTTTGCAGATTAAT 58.677 39.130 0.00 0.00 0.00 1.40
904 1076 4.391830 TCTCACACCGTTTGCAGATTAATC 59.608 41.667 7.41 7.41 0.00 1.75
905 1077 3.438781 TCACACCGTTTGCAGATTAATCC 59.561 43.478 11.92 0.00 0.00 3.01
906 1078 3.440173 CACACCGTTTGCAGATTAATCCT 59.560 43.478 11.92 0.00 0.00 3.24
907 1079 3.689649 ACACCGTTTGCAGATTAATCCTC 59.310 43.478 11.92 4.90 0.00 3.71
908 1080 3.941483 CACCGTTTGCAGATTAATCCTCT 59.059 43.478 11.92 0.00 0.00 3.69
922 1094 1.377690 TCCTCTCTCACTGACCCTCT 58.622 55.000 0.00 0.00 0.00 3.69
1056 1232 1.511316 TAAACCCCATCACCCCCACC 61.511 60.000 0.00 0.00 0.00 4.61
1167 1502 5.847304 TCATCGATCCTCTCAAATAACCAG 58.153 41.667 0.00 0.00 0.00 4.00
1169 1504 3.134458 CGATCCTCTCAAATAACCAGGC 58.866 50.000 0.00 0.00 0.00 4.85
1192 1553 6.405397 GGCGATGTTTGTACCCAAGATTTAAT 60.405 38.462 0.00 0.00 0.00 1.40
1193 1554 6.472163 GCGATGTTTGTACCCAAGATTTAATG 59.528 38.462 0.00 0.00 0.00 1.90
1668 2085 5.469760 CGTACCTGATCCATAATGCATGAAA 59.530 40.000 0.00 0.00 36.69 2.69
2189 2624 8.444715 CAGCGAGGTACATAGAGTATAGTAAAG 58.555 40.741 0.00 0.00 34.67 1.85
2254 2704 6.256975 TCTGCATACCGATGTTATTGTGTAAC 59.743 38.462 0.00 0.00 35.30 2.50
2416 3679 4.797471 TGAAATGTTGGAATCTTTGCTCG 58.203 39.130 0.00 0.00 0.00 5.03
2440 3703 1.069227 GTGTTCCACCTCGACATTTGC 60.069 52.381 0.00 0.00 0.00 3.68
2524 3821 7.065204 CAGTTCCTAAAAACTAGAAGAGCATCC 59.935 40.741 0.00 0.00 37.38 3.51
2539 3836 5.477913 AGAGCATCCTTACCCTACCTATTT 58.522 41.667 0.00 0.00 33.66 1.40
2540 3837 5.911766 AGAGCATCCTTACCCTACCTATTTT 59.088 40.000 0.00 0.00 33.66 1.82
2708 4008 1.578215 ATGCTCTGGATGCCTTGGGT 61.578 55.000 0.00 0.00 0.00 4.51
2714 4014 0.780637 TGGATGCCTTGGGTTTGGTA 59.219 50.000 0.00 0.00 0.00 3.25
2802 4102 6.486253 ACAGTAAGTTGATGCTGTTATGTG 57.514 37.500 0.00 0.00 42.57 3.21
2806 4106 7.545615 CAGTAAGTTGATGCTGTTATGTGACTA 59.454 37.037 0.00 0.00 0.00 2.59
2940 4241 4.131596 TCGAAACCCTTGTTCCTTTGTAG 58.868 43.478 0.00 0.00 32.15 2.74
2991 4292 0.391793 GTCAGTGCTTAGGAGGTGCC 60.392 60.000 0.00 0.00 0.00 5.01
3058 4359 3.511477 AGGACTGTTAGTGTGACCATCT 58.489 45.455 0.00 0.00 0.00 2.90
3070 4371 6.868622 AGTGTGACCATCTGTTTCTACTATC 58.131 40.000 0.00 0.00 0.00 2.08
3083 4384 9.646427 CTGTTTCTACTATCTAATATTCAGGGC 57.354 37.037 0.00 0.00 0.00 5.19
3084 4385 9.381038 TGTTTCTACTATCTAATATTCAGGGCT 57.619 33.333 0.00 0.00 0.00 5.19
3087 4388 9.830186 TTCTACTATCTAATATTCAGGGCTTCT 57.170 33.333 0.00 0.00 0.00 2.85
3088 4389 9.830186 TCTACTATCTAATATTCAGGGCTTCTT 57.170 33.333 0.00 0.00 0.00 2.52
3090 4391 8.734593 ACTATCTAATATTCAGGGCTTCTTCT 57.265 34.615 0.00 0.00 0.00 2.85
3091 4392 8.811994 ACTATCTAATATTCAGGGCTTCTTCTC 58.188 37.037 0.00 0.00 0.00 2.87
3092 4393 7.623999 ATCTAATATTCAGGGCTTCTTCTCA 57.376 36.000 0.00 0.00 0.00 3.27
3093 4394 7.437713 TCTAATATTCAGGGCTTCTTCTCAA 57.562 36.000 0.00 0.00 0.00 3.02
3094 4395 7.861629 TCTAATATTCAGGGCTTCTTCTCAAA 58.138 34.615 0.00 0.00 0.00 2.69
3095 4396 8.328758 TCTAATATTCAGGGCTTCTTCTCAAAA 58.671 33.333 0.00 0.00 0.00 2.44
3096 4397 7.781324 AATATTCAGGGCTTCTTCTCAAAAA 57.219 32.000 0.00 0.00 0.00 1.94
3259 4561 7.876068 TCTTACCATTGAATCGTTACTTGAGTT 59.124 33.333 0.00 0.00 0.00 3.01
3289 4606 3.153919 TGAACTTCCACATTTACCTGCC 58.846 45.455 0.00 0.00 0.00 4.85
3297 4614 2.095059 CACATTTACCTGCCTGCTTGAC 60.095 50.000 0.00 0.00 0.00 3.18
3298 4615 2.161855 CATTTACCTGCCTGCTTGACA 58.838 47.619 0.00 0.00 0.00 3.58
3299 4616 1.604604 TTTACCTGCCTGCTTGACAC 58.395 50.000 0.00 0.00 0.00 3.67
3447 4764 8.991783 ACTTGAATTGTCATCCATTCATCTAT 57.008 30.769 0.40 0.00 33.66 1.98
3495 4812 0.116940 AAGGGTGCCATTCCCATTGT 59.883 50.000 3.79 0.00 46.82 2.71
3497 4814 0.536724 GGGTGCCATTCCCATTGTTC 59.463 55.000 0.00 0.00 44.05 3.18
3503 4820 2.562298 GCCATTCCCATTGTTCTTGACA 59.438 45.455 0.00 0.00 36.19 3.58
3514 4831 6.968904 CCATTGTTCTTGACATATAGTGCAAC 59.031 38.462 0.00 0.00 38.26 4.17
3517 4834 5.411361 TGTTCTTGACATATAGTGCAACCAC 59.589 40.000 0.00 0.00 36.36 4.16
3544 4861 7.691050 CGTACTATTCATTGATGCATGCATAAG 59.309 37.037 32.27 20.77 36.70 1.73
3554 4896 3.595173 TGCATGCATAAGTCGTTGTACT 58.405 40.909 18.46 0.00 0.00 2.73
3605 4947 3.766151 CTTGTTTATGGTGATGCTGCAG 58.234 45.455 10.11 10.11 0.00 4.41
3606 4948 3.070476 TGTTTATGGTGATGCTGCAGA 57.930 42.857 20.43 2.70 0.00 4.26
3666 5011 1.344763 CTCTCCTTTCCGTTGACCTGT 59.655 52.381 0.00 0.00 0.00 4.00
3707 5052 6.799582 TCCCCAGGGATTAAGATTAAGATCAT 59.200 38.462 7.25 0.00 39.76 2.45
3712 5057 6.658391 AGGGATTAAGATTAAGATCATGCTGC 59.342 38.462 0.00 0.00 34.60 5.25
3713 5058 6.658391 GGGATTAAGATTAAGATCATGCTGCT 59.342 38.462 0.00 0.00 34.60 4.24
3714 5059 7.176340 GGGATTAAGATTAAGATCATGCTGCTT 59.824 37.037 0.00 0.00 34.60 3.91
3715 5060 9.224267 GGATTAAGATTAAGATCATGCTGCTTA 57.776 33.333 0.00 0.00 34.60 3.09
3743 5088 9.594478 TTAGCACGATCATGAAGTTTTATTAGA 57.406 29.630 0.00 0.00 0.00 2.10
3744 5089 7.910304 AGCACGATCATGAAGTTTTATTAGAC 58.090 34.615 0.00 0.00 0.00 2.59
3745 5090 7.766278 AGCACGATCATGAAGTTTTATTAGACT 59.234 33.333 0.00 0.00 0.00 3.24
3746 5091 9.031360 GCACGATCATGAAGTTTTATTAGACTA 57.969 33.333 0.00 0.00 0.00 2.59
3748 5093 9.250624 ACGATCATGAAGTTTTATTAGACTAGC 57.749 33.333 0.00 0.00 0.00 3.42
3749 5094 9.249457 CGATCATGAAGTTTTATTAGACTAGCA 57.751 33.333 0.00 0.00 0.00 3.49
3751 5096 9.890629 ATCATGAAGTTTTATTAGACTAGCACA 57.109 29.630 0.00 0.00 0.00 4.57
3752 5097 9.719355 TCATGAAGTTTTATTAGACTAGCACAA 57.281 29.630 0.00 0.00 0.00 3.33
3760 5105 9.953565 TTTTATTAGACTAGCACAAATACCTGT 57.046 29.630 0.00 0.00 0.00 4.00
3779 5124 4.598257 CGAAGCAACGGGAGACAT 57.402 55.556 0.00 0.00 0.00 3.06
3780 5125 2.840974 CGAAGCAACGGGAGACATT 58.159 52.632 0.00 0.00 0.00 2.71
3781 5126 1.156736 CGAAGCAACGGGAGACATTT 58.843 50.000 0.00 0.00 0.00 2.32
3782 5127 1.535462 CGAAGCAACGGGAGACATTTT 59.465 47.619 0.00 0.00 0.00 1.82
3783 5128 2.031157 CGAAGCAACGGGAGACATTTTT 60.031 45.455 0.00 0.00 0.00 1.94
3784 5129 3.187637 CGAAGCAACGGGAGACATTTTTA 59.812 43.478 0.00 0.00 0.00 1.52
3785 5130 4.473199 GAAGCAACGGGAGACATTTTTAC 58.527 43.478 0.00 0.00 0.00 2.01
3786 5131 3.482436 AGCAACGGGAGACATTTTTACA 58.518 40.909 0.00 0.00 0.00 2.41
3787 5132 3.252458 AGCAACGGGAGACATTTTTACAC 59.748 43.478 0.00 0.00 0.00 2.90
3788 5133 3.805823 CAACGGGAGACATTTTTACACG 58.194 45.455 0.00 0.00 0.00 4.49
3789 5134 3.116079 ACGGGAGACATTTTTACACGT 57.884 42.857 0.00 0.00 0.00 4.49
3790 5135 3.062042 ACGGGAGACATTTTTACACGTC 58.938 45.455 0.00 0.00 0.00 4.34
3791 5136 3.243975 ACGGGAGACATTTTTACACGTCT 60.244 43.478 0.00 0.00 41.32 4.18
3796 5141 5.283060 AGACATTTTTACACGTCTCATGC 57.717 39.130 0.00 0.00 33.49 4.06
3797 5142 4.154195 AGACATTTTTACACGTCTCATGCC 59.846 41.667 0.00 0.00 33.49 4.40
3798 5143 4.072131 ACATTTTTACACGTCTCATGCCT 58.928 39.130 0.00 0.00 0.00 4.75
3799 5144 4.154195 ACATTTTTACACGTCTCATGCCTC 59.846 41.667 0.00 0.00 0.00 4.70
3800 5145 1.990799 TTTACACGTCTCATGCCTCG 58.009 50.000 0.00 0.00 0.00 4.63
3801 5146 0.172578 TTACACGTCTCATGCCTCGG 59.827 55.000 0.00 0.00 0.00 4.63
3802 5147 0.963856 TACACGTCTCATGCCTCGGT 60.964 55.000 0.00 5.82 0.00 4.69
3803 5148 0.963856 ACACGTCTCATGCCTCGGTA 60.964 55.000 0.00 0.00 0.00 4.02
3804 5149 0.172578 CACGTCTCATGCCTCGGTAA 59.827 55.000 0.00 0.00 0.00 2.85
3805 5150 0.892755 ACGTCTCATGCCTCGGTAAA 59.107 50.000 7.78 0.00 0.00 2.01
3806 5151 1.480954 ACGTCTCATGCCTCGGTAAAT 59.519 47.619 7.78 0.00 0.00 1.40
3807 5152 2.093658 ACGTCTCATGCCTCGGTAAATT 60.094 45.455 7.78 0.00 0.00 1.82
3808 5153 2.540101 CGTCTCATGCCTCGGTAAATTC 59.460 50.000 0.00 0.00 0.00 2.17
3809 5154 2.872858 GTCTCATGCCTCGGTAAATTCC 59.127 50.000 0.00 0.00 0.00 3.01
3818 5163 2.000429 CGGTAAATTCCGTTCGTCCT 58.000 50.000 0.00 0.00 44.77 3.85
3819 5164 2.340337 CGGTAAATTCCGTTCGTCCTT 58.660 47.619 0.00 0.00 44.77 3.36
3820 5165 2.093152 CGGTAAATTCCGTTCGTCCTTG 59.907 50.000 0.00 0.00 44.77 3.61
3821 5166 3.069289 GGTAAATTCCGTTCGTCCTTGT 58.931 45.455 0.00 0.00 0.00 3.16
3822 5167 3.124128 GGTAAATTCCGTTCGTCCTTGTC 59.876 47.826 0.00 0.00 0.00 3.18
3823 5168 2.833631 AATTCCGTTCGTCCTTGTCT 57.166 45.000 0.00 0.00 0.00 3.41
3824 5169 2.365408 ATTCCGTTCGTCCTTGTCTC 57.635 50.000 0.00 0.00 0.00 3.36
3825 5170 1.034356 TTCCGTTCGTCCTTGTCTCA 58.966 50.000 0.00 0.00 0.00 3.27
3826 5171 0.596577 TCCGTTCGTCCTTGTCTCAG 59.403 55.000 0.00 0.00 0.00 3.35
3827 5172 0.314302 CCGTTCGTCCTTGTCTCAGT 59.686 55.000 0.00 0.00 0.00 3.41
3828 5173 1.666311 CCGTTCGTCCTTGTCTCAGTC 60.666 57.143 0.00 0.00 0.00 3.51
3829 5174 1.666311 CGTTCGTCCTTGTCTCAGTCC 60.666 57.143 0.00 0.00 0.00 3.85
3830 5175 0.596577 TTCGTCCTTGTCTCAGTCCG 59.403 55.000 0.00 0.00 0.00 4.79
3831 5176 1.444553 CGTCCTTGTCTCAGTCCGC 60.445 63.158 0.00 0.00 0.00 5.54
3832 5177 1.444553 GTCCTTGTCTCAGTCCGCG 60.445 63.158 0.00 0.00 0.00 6.46
3833 5178 2.811317 CCTTGTCTCAGTCCGCGC 60.811 66.667 0.00 0.00 0.00 6.86
3834 5179 2.259818 CTTGTCTCAGTCCGCGCT 59.740 61.111 5.56 0.00 0.00 5.92
3835 5180 1.803519 CTTGTCTCAGTCCGCGCTC 60.804 63.158 5.56 0.00 0.00 5.03
3836 5181 3.282745 TTGTCTCAGTCCGCGCTCC 62.283 63.158 5.56 0.00 0.00 4.70
3837 5182 3.749064 GTCTCAGTCCGCGCTCCA 61.749 66.667 5.56 0.00 0.00 3.86
3838 5183 2.755876 TCTCAGTCCGCGCTCCAT 60.756 61.111 5.56 0.00 0.00 3.41
3839 5184 1.453197 TCTCAGTCCGCGCTCCATA 60.453 57.895 5.56 0.00 0.00 2.74
3840 5185 0.823769 TCTCAGTCCGCGCTCCATAT 60.824 55.000 5.56 0.00 0.00 1.78
3841 5186 0.881796 CTCAGTCCGCGCTCCATATA 59.118 55.000 5.56 0.00 0.00 0.86
3842 5187 1.474478 CTCAGTCCGCGCTCCATATAT 59.526 52.381 5.56 0.00 0.00 0.86
3843 5188 2.683362 CTCAGTCCGCGCTCCATATATA 59.317 50.000 5.56 0.00 0.00 0.86
3844 5189 3.288092 TCAGTCCGCGCTCCATATATAT 58.712 45.455 5.56 0.00 0.00 0.86
3845 5190 4.457466 TCAGTCCGCGCTCCATATATATA 58.543 43.478 5.56 0.00 0.00 0.86
3846 5191 5.070685 TCAGTCCGCGCTCCATATATATAT 58.929 41.667 5.56 0.00 0.00 0.86
3847 5192 5.535030 TCAGTCCGCGCTCCATATATATATT 59.465 40.000 5.56 0.00 0.00 1.28
3848 5193 6.040504 TCAGTCCGCGCTCCATATATATATTT 59.959 38.462 5.56 0.00 0.00 1.40
3849 5194 6.701841 CAGTCCGCGCTCCATATATATATTTT 59.298 38.462 5.56 0.00 0.00 1.82
3850 5195 7.224753 CAGTCCGCGCTCCATATATATATTTTT 59.775 37.037 5.56 0.00 0.00 1.94
3851 5196 8.418662 AGTCCGCGCTCCATATATATATTTTTA 58.581 33.333 5.56 0.00 0.00 1.52
3852 5197 8.700644 GTCCGCGCTCCATATATATATTTTTAG 58.299 37.037 5.56 0.62 0.00 1.85
3853 5198 8.418662 TCCGCGCTCCATATATATATTTTTAGT 58.581 33.333 5.56 0.00 0.00 2.24
3854 5199 9.042008 CCGCGCTCCATATATATATTTTTAGTT 57.958 33.333 5.56 0.00 0.00 2.24
3855 5200 9.849607 CGCGCTCCATATATATATTTTTAGTTG 57.150 33.333 5.56 0.00 0.00 3.16
3871 5216 8.706322 TTTTTAGTTGGATAGCTTTCCTTTCT 57.294 30.769 21.88 17.79 36.68 2.52
3872 5217 8.706322 TTTTAGTTGGATAGCTTTCCTTTCTT 57.294 30.769 21.88 7.78 36.68 2.52
3873 5218 7.923414 TTAGTTGGATAGCTTTCCTTTCTTC 57.077 36.000 21.88 7.82 36.68 2.87
3874 5219 5.880901 AGTTGGATAGCTTTCCTTTCTTCA 58.119 37.500 21.88 0.00 36.68 3.02
3875 5220 6.488715 AGTTGGATAGCTTTCCTTTCTTCAT 58.511 36.000 21.88 0.00 36.68 2.57
3876 5221 6.950619 AGTTGGATAGCTTTCCTTTCTTCATT 59.049 34.615 21.88 0.00 36.68 2.57
3877 5222 7.121907 AGTTGGATAGCTTTCCTTTCTTCATTC 59.878 37.037 21.88 0.00 36.68 2.67
3878 5223 6.725364 TGGATAGCTTTCCTTTCTTCATTCT 58.275 36.000 21.88 0.00 36.68 2.40
3879 5224 6.600822 TGGATAGCTTTCCTTTCTTCATTCTG 59.399 38.462 21.88 0.00 36.68 3.02
3880 5225 6.601217 GGATAGCTTTCCTTTCTTCATTCTGT 59.399 38.462 15.33 0.00 32.68 3.41
3881 5226 7.770897 GGATAGCTTTCCTTTCTTCATTCTGTA 59.229 37.037 15.33 0.00 32.68 2.74
3882 5227 9.167311 GATAGCTTTCCTTTCTTCATTCTGTAA 57.833 33.333 0.00 0.00 0.00 2.41
3883 5228 7.823745 AGCTTTCCTTTCTTCATTCTGTAAA 57.176 32.000 0.00 0.00 0.00 2.01
3884 5229 7.652727 AGCTTTCCTTTCTTCATTCTGTAAAC 58.347 34.615 0.00 0.00 0.00 2.01
3885 5230 7.503902 AGCTTTCCTTTCTTCATTCTGTAAACT 59.496 33.333 0.00 0.00 0.00 2.66
3886 5231 7.592903 GCTTTCCTTTCTTCATTCTGTAAACTG 59.407 37.037 0.00 0.00 0.00 3.16
3887 5232 7.510549 TTCCTTTCTTCATTCTGTAAACTGG 57.489 36.000 0.00 0.00 0.00 4.00
3888 5233 6.837312 TCCTTTCTTCATTCTGTAAACTGGA 58.163 36.000 0.00 0.00 0.00 3.86
3889 5234 7.461749 TCCTTTCTTCATTCTGTAAACTGGAT 58.538 34.615 0.00 0.00 0.00 3.41
3890 5235 7.944554 TCCTTTCTTCATTCTGTAAACTGGATT 59.055 33.333 0.00 0.00 0.00 3.01
3891 5236 8.025445 CCTTTCTTCATTCTGTAAACTGGATTG 58.975 37.037 0.00 0.00 0.00 2.67
3892 5237 8.463930 TTTCTTCATTCTGTAAACTGGATTGT 57.536 30.769 0.00 0.00 0.00 2.71
3893 5238 8.463930 TTCTTCATTCTGTAAACTGGATTGTT 57.536 30.769 0.00 0.00 0.00 2.83
3894 5239 7.874940 TCTTCATTCTGTAAACTGGATTGTTG 58.125 34.615 0.00 0.00 0.00 3.33
3895 5240 7.502226 TCTTCATTCTGTAAACTGGATTGTTGT 59.498 33.333 0.00 0.00 0.00 3.32
3896 5241 6.969366 TCATTCTGTAAACTGGATTGTTGTG 58.031 36.000 0.00 0.00 0.00 3.33
3897 5242 6.545666 TCATTCTGTAAACTGGATTGTTGTGT 59.454 34.615 0.00 0.00 0.00 3.72
3898 5243 6.767524 TTCTGTAAACTGGATTGTTGTGTT 57.232 33.333 0.00 0.00 0.00 3.32
3899 5244 6.130298 TCTGTAAACTGGATTGTTGTGTTG 57.870 37.500 0.00 0.00 0.00 3.33
3900 5245 5.067153 TCTGTAAACTGGATTGTTGTGTTGG 59.933 40.000 0.00 0.00 0.00 3.77
3901 5246 4.707448 TGTAAACTGGATTGTTGTGTTGGT 59.293 37.500 0.00 0.00 0.00 3.67
3902 5247 4.817318 AAACTGGATTGTTGTGTTGGTT 57.183 36.364 0.00 0.00 0.00 3.67
3903 5248 3.799281 ACTGGATTGTTGTGTTGGTTG 57.201 42.857 0.00 0.00 0.00 3.77
3904 5249 2.430332 ACTGGATTGTTGTGTTGGTTGG 59.570 45.455 0.00 0.00 0.00 3.77
3905 5250 2.430332 CTGGATTGTTGTGTTGGTTGGT 59.570 45.455 0.00 0.00 0.00 3.67
3906 5251 2.834549 TGGATTGTTGTGTTGGTTGGTT 59.165 40.909 0.00 0.00 0.00 3.67
3907 5252 3.118956 TGGATTGTTGTGTTGGTTGGTTC 60.119 43.478 0.00 0.00 0.00 3.62
3908 5253 3.118956 GGATTGTTGTGTTGGTTGGTTCA 60.119 43.478 0.00 0.00 0.00 3.18
3909 5254 3.584406 TTGTTGTGTTGGTTGGTTCAG 57.416 42.857 0.00 0.00 0.00 3.02
3910 5255 2.520069 TGTTGTGTTGGTTGGTTCAGT 58.480 42.857 0.00 0.00 0.00 3.41
3911 5256 3.687125 TGTTGTGTTGGTTGGTTCAGTA 58.313 40.909 0.00 0.00 0.00 2.74
3912 5257 3.692101 TGTTGTGTTGGTTGGTTCAGTAG 59.308 43.478 0.00 0.00 0.00 2.57
3913 5258 2.294074 TGTGTTGGTTGGTTCAGTAGC 58.706 47.619 0.00 0.00 0.00 3.58
3914 5259 2.294074 GTGTTGGTTGGTTCAGTAGCA 58.706 47.619 0.00 0.00 0.00 3.49
3915 5260 2.290641 GTGTTGGTTGGTTCAGTAGCAG 59.709 50.000 0.00 0.00 35.32 4.24
3916 5261 1.266989 GTTGGTTGGTTCAGTAGCAGC 59.733 52.381 0.00 0.00 35.32 5.25
3917 5262 0.764890 TGGTTGGTTCAGTAGCAGCT 59.235 50.000 0.00 0.00 35.97 4.24
3918 5263 1.142870 TGGTTGGTTCAGTAGCAGCTT 59.857 47.619 0.00 0.00 35.97 3.74
3919 5264 2.230660 GGTTGGTTCAGTAGCAGCTTT 58.769 47.619 0.00 0.00 35.97 3.51
3920 5265 2.030805 GGTTGGTTCAGTAGCAGCTTTG 60.031 50.000 0.00 0.00 35.97 2.77
3921 5266 1.238439 TGGTTCAGTAGCAGCTTTGC 58.762 50.000 0.00 0.00 0.00 3.68
3923 5268 2.038426 TGGTTCAGTAGCAGCTTTGCTA 59.962 45.455 0.00 3.66 44.28 3.49
3928 5273 3.050703 TAGCAGCTTTGCTACTCGC 57.949 52.632 0.00 0.00 44.28 5.03
3929 5274 0.532573 TAGCAGCTTTGCTACTCGCT 59.467 50.000 0.00 7.17 44.28 4.93
3931 5276 2.084844 CAGCTTTGCTACTCGCTGG 58.915 57.895 0.00 0.00 44.48 4.85
3932 5277 1.078848 AGCTTTGCTACTCGCTGGG 60.079 57.895 0.00 0.00 36.99 4.45
3933 5278 2.109126 GCTTTGCTACTCGCTGGGG 61.109 63.158 0.00 0.00 40.11 4.96
3934 5279 1.596934 CTTTGCTACTCGCTGGGGA 59.403 57.895 0.00 0.00 40.11 4.81
3935 5280 0.741221 CTTTGCTACTCGCTGGGGAC 60.741 60.000 0.00 0.00 40.11 4.46
3936 5281 1.192146 TTTGCTACTCGCTGGGGACT 61.192 55.000 0.00 0.00 40.11 3.85
3937 5282 1.605058 TTGCTACTCGCTGGGGACTC 61.605 60.000 0.00 0.00 40.11 3.36
3938 5283 2.052690 GCTACTCGCTGGGGACTCA 61.053 63.158 0.00 0.00 35.14 3.41
3939 5284 1.395826 GCTACTCGCTGGGGACTCAT 61.396 60.000 0.00 0.00 35.14 2.90
3940 5285 0.671251 CTACTCGCTGGGGACTCATC 59.329 60.000 0.00 0.00 0.00 2.92
3941 5286 0.755698 TACTCGCTGGGGACTCATCC 60.756 60.000 0.00 0.00 45.42 3.51
3942 5287 1.760086 CTCGCTGGGGACTCATCCT 60.760 63.158 0.00 0.00 45.46 3.24
3943 5288 1.306141 TCGCTGGGGACTCATCCTT 60.306 57.895 0.00 0.00 45.46 3.36
3944 5289 0.909610 TCGCTGGGGACTCATCCTTT 60.910 55.000 0.00 0.00 45.46 3.11
3945 5290 0.462759 CGCTGGGGACTCATCCTTTC 60.463 60.000 0.00 0.00 45.46 2.62
3946 5291 0.915364 GCTGGGGACTCATCCTTTCT 59.085 55.000 0.00 0.00 45.46 2.52
3947 5292 1.407989 GCTGGGGACTCATCCTTTCTG 60.408 57.143 0.00 0.00 45.46 3.02
3948 5293 1.211457 CTGGGGACTCATCCTTTCTGG 59.789 57.143 0.00 0.00 45.46 3.86
3949 5294 0.106967 GGGGACTCATCCTTTCTGGC 60.107 60.000 0.00 0.00 45.46 4.85
3950 5295 0.106967 GGGACTCATCCTTTCTGGCC 60.107 60.000 0.00 0.00 45.46 5.36
3951 5296 0.620556 GGACTCATCCTTTCTGGCCA 59.379 55.000 4.71 4.71 42.45 5.36
3952 5297 1.680249 GGACTCATCCTTTCTGGCCAC 60.680 57.143 0.00 0.00 42.45 5.01
3953 5298 0.036010 ACTCATCCTTTCTGGCCACG 60.036 55.000 0.00 0.00 35.26 4.94
3954 5299 0.036010 CTCATCCTTTCTGGCCACGT 60.036 55.000 0.00 0.00 35.26 4.49
3955 5300 0.036388 TCATCCTTTCTGGCCACGTC 60.036 55.000 0.00 0.00 35.26 4.34
3956 5301 1.079127 ATCCTTTCTGGCCACGTCG 60.079 57.895 0.00 0.00 35.26 5.12
3957 5302 1.827399 ATCCTTTCTGGCCACGTCGT 61.827 55.000 0.00 0.00 35.26 4.34
3958 5303 2.027625 CCTTTCTGGCCACGTCGTC 61.028 63.158 0.00 0.00 0.00 4.20
3959 5304 1.300620 CTTTCTGGCCACGTCGTCA 60.301 57.895 0.00 0.00 0.00 4.35
3960 5305 1.557443 CTTTCTGGCCACGTCGTCAC 61.557 60.000 0.00 0.00 0.00 3.67
3970 5315 3.575297 CGTCGTCACGTAGGTGTAG 57.425 57.895 14.78 10.22 44.68 2.74
3971 5316 0.095935 CGTCGTCACGTAGGTGTAGG 59.904 60.000 14.78 8.01 44.68 3.18
3972 5317 1.442769 GTCGTCACGTAGGTGTAGGA 58.557 55.000 14.78 9.87 44.68 2.94
3973 5318 2.012673 GTCGTCACGTAGGTGTAGGAT 58.987 52.381 14.78 0.00 44.68 3.24
3974 5319 2.421424 GTCGTCACGTAGGTGTAGGATT 59.579 50.000 14.78 0.00 44.68 3.01
3975 5320 3.623060 GTCGTCACGTAGGTGTAGGATTA 59.377 47.826 14.78 0.00 44.68 1.75
3976 5321 4.274459 GTCGTCACGTAGGTGTAGGATTAT 59.726 45.833 14.78 0.00 44.68 1.28
3977 5322 4.883585 TCGTCACGTAGGTGTAGGATTATT 59.116 41.667 14.78 0.00 44.68 1.40
3978 5323 4.974275 CGTCACGTAGGTGTAGGATTATTG 59.026 45.833 14.78 0.00 44.68 1.90
3979 5324 5.287226 GTCACGTAGGTGTAGGATTATTGG 58.713 45.833 14.78 0.00 44.68 3.16
3980 5325 4.342951 TCACGTAGGTGTAGGATTATTGGG 59.657 45.833 14.78 0.00 44.68 4.12
3981 5326 3.644738 ACGTAGGTGTAGGATTATTGGGG 59.355 47.826 0.00 0.00 0.00 4.96
3982 5327 3.644738 CGTAGGTGTAGGATTATTGGGGT 59.355 47.826 0.00 0.00 0.00 4.95
3983 5328 4.834496 CGTAGGTGTAGGATTATTGGGGTA 59.166 45.833 0.00 0.00 0.00 3.69
3984 5329 5.305128 CGTAGGTGTAGGATTATTGGGGTAA 59.695 44.000 0.00 0.00 0.00 2.85
3985 5330 5.641789 AGGTGTAGGATTATTGGGGTAAC 57.358 43.478 0.00 0.00 0.00 2.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.920151 TGACATCCAAACATTTACTGAAAACAG 59.080 33.333 0.00 0.00 0.00 3.16
1 2 7.776107 TGACATCCAAACATTTACTGAAAACA 58.224 30.769 0.00 0.00 0.00 2.83
2 3 7.382218 CCTGACATCCAAACATTTACTGAAAAC 59.618 37.037 0.00 0.00 0.00 2.43
57 58 4.202101 TGTTTGATCACCATCAACAACCAC 60.202 41.667 7.32 0.00 46.71 4.16
98 99 3.137360 AGAGTGCTCCCTTTGTTTCTTCT 59.863 43.478 0.00 0.00 0.00 2.85
109 110 1.722034 TCACAAAGAGAGTGCTCCCT 58.278 50.000 0.00 0.00 42.30 4.20
146 147 2.386661 ACCGCTCTCTGTAAACATGG 57.613 50.000 0.00 0.00 0.00 3.66
157 158 3.964909 ACATGTTTTTCAAACCGCTCTC 58.035 40.909 0.00 0.00 0.00 3.20
181 182 9.581099 TCTTTTCAAAAACTGTAGGAACAATTC 57.419 29.630 0.00 0.00 34.49 2.17
226 227 6.366061 GGAGTACTATCGGTAAACGTGTTTTT 59.634 38.462 2.97 0.00 44.69 1.94
231 232 4.889832 AGGAGTACTATCGGTAAACGTG 57.110 45.455 0.00 0.00 44.69 4.49
233 234 6.324819 TGAAAAGGAGTACTATCGGTAAACG 58.675 40.000 0.00 0.00 46.11 3.60
260 261 4.136796 TGCTCTCTGTAAAAATGCTGTGT 58.863 39.130 0.00 0.00 0.00 3.72
261 262 4.214971 ACTGCTCTCTGTAAAAATGCTGTG 59.785 41.667 0.00 0.00 31.84 3.66
262 263 4.392940 ACTGCTCTCTGTAAAAATGCTGT 58.607 39.130 0.00 0.00 0.00 4.40
269 307 7.120579 TGTTTTCTCAAACTGCTCTCTGTAAAA 59.879 33.333 0.00 0.00 42.61 1.52
277 315 4.883585 TGACATGTTTTCTCAAACTGCTCT 59.116 37.500 0.00 0.00 42.61 4.09
317 441 4.816925 GTGCTTTGAAAAGGAGTACTCTGT 59.183 41.667 21.88 7.59 37.02 3.41
318 442 4.084328 CGTGCTTTGAAAAGGAGTACTCTG 60.084 45.833 21.88 3.70 37.02 3.35
319 443 4.058817 CGTGCTTTGAAAAGGAGTACTCT 58.941 43.478 21.88 2.22 37.02 3.24
320 444 3.186613 CCGTGCTTTGAAAAGGAGTACTC 59.813 47.826 14.87 14.87 37.02 2.59
321 445 3.139077 CCGTGCTTTGAAAAGGAGTACT 58.861 45.455 0.00 0.00 37.02 2.73
322 446 2.350484 GCCGTGCTTTGAAAAGGAGTAC 60.350 50.000 5.02 0.00 37.02 2.73
323 447 1.877443 GCCGTGCTTTGAAAAGGAGTA 59.123 47.619 5.02 0.00 37.02 2.59
324 448 0.668535 GCCGTGCTTTGAAAAGGAGT 59.331 50.000 5.02 0.00 37.02 3.85
325 449 0.954452 AGCCGTGCTTTGAAAAGGAG 59.046 50.000 5.02 0.00 37.02 3.69
364 488 8.477419 TGTAGGTCTTGATTCCTTTTCAAAAT 57.523 30.769 0.00 0.00 32.98 1.82
470 601 1.970640 GGCCAACTCCAGGAATGTTTT 59.029 47.619 0.00 0.00 0.00 2.43
473 604 0.779997 AAGGCCAACTCCAGGAATGT 59.220 50.000 5.01 0.00 0.00 2.71
522 661 1.553248 TGTCCATCGAACAGGTAAGGG 59.447 52.381 0.00 0.00 0.00 3.95
675 815 2.707849 CGGTAGTCGGGGTGGTGAG 61.708 68.421 0.00 0.00 34.75 3.51
741 881 4.666253 GCTGCTGGCAGGTTGGGA 62.666 66.667 21.76 0.00 43.77 4.37
830 979 0.883833 GGTTGCACATCTGGTTCTGG 59.116 55.000 0.00 0.00 0.00 3.86
831 980 0.883833 GGGTTGCACATCTGGTTCTG 59.116 55.000 0.00 0.00 0.00 3.02
832 981 0.251341 GGGGTTGCACATCTGGTTCT 60.251 55.000 0.00 0.00 0.00 3.01
833 982 0.539438 TGGGGTTGCACATCTGGTTC 60.539 55.000 0.00 0.00 0.00 3.62
834 983 0.114954 ATGGGGTTGCACATCTGGTT 59.885 50.000 0.00 0.00 0.00 3.67
835 984 0.323725 GATGGGGTTGCACATCTGGT 60.324 55.000 7.57 0.00 40.17 4.00
848 997 1.453633 ATGAATGGAGAGGGATGGGG 58.546 55.000 0.00 0.00 0.00 4.96
889 1061 5.006165 GTGAGAGAGGATTAATCTGCAAACG 59.994 44.000 14.95 0.00 0.00 3.60
890 1062 6.036953 CAGTGAGAGAGGATTAATCTGCAAAC 59.963 42.308 14.95 5.95 0.00 2.93
891 1063 6.070596 TCAGTGAGAGAGGATTAATCTGCAAA 60.071 38.462 14.95 0.00 0.00 3.68
892 1064 5.423290 TCAGTGAGAGAGGATTAATCTGCAA 59.577 40.000 14.95 0.00 0.00 4.08
893 1065 4.958581 TCAGTGAGAGAGGATTAATCTGCA 59.041 41.667 14.95 0.00 0.00 4.41
894 1066 5.288804 GTCAGTGAGAGAGGATTAATCTGC 58.711 45.833 14.95 7.55 0.00 4.26
895 1067 5.221422 GGGTCAGTGAGAGAGGATTAATCTG 60.221 48.000 14.95 2.78 0.00 2.90
896 1068 4.898861 GGGTCAGTGAGAGAGGATTAATCT 59.101 45.833 14.95 1.62 0.00 2.40
897 1069 4.898861 AGGGTCAGTGAGAGAGGATTAATC 59.101 45.833 6.93 6.93 0.00 1.75
898 1070 4.889780 AGGGTCAGTGAGAGAGGATTAAT 58.110 43.478 0.00 0.00 0.00 1.40
899 1071 4.017037 AGAGGGTCAGTGAGAGAGGATTAA 60.017 45.833 0.00 0.00 0.00 1.40
900 1072 3.529734 AGAGGGTCAGTGAGAGAGGATTA 59.470 47.826 0.00 0.00 0.00 1.75
901 1073 2.314549 AGAGGGTCAGTGAGAGAGGATT 59.685 50.000 0.00 0.00 0.00 3.01
902 1074 1.929494 AGAGGGTCAGTGAGAGAGGAT 59.071 52.381 0.00 0.00 0.00 3.24
903 1075 1.283613 GAGAGGGTCAGTGAGAGAGGA 59.716 57.143 0.00 0.00 0.00 3.71
904 1076 1.684869 GGAGAGGGTCAGTGAGAGAGG 60.685 61.905 0.00 0.00 0.00 3.69
905 1077 1.284785 AGGAGAGGGTCAGTGAGAGAG 59.715 57.143 0.00 0.00 0.00 3.20
906 1078 1.377690 AGGAGAGGGTCAGTGAGAGA 58.622 55.000 0.00 0.00 0.00 3.10
907 1079 2.099405 GAAGGAGAGGGTCAGTGAGAG 58.901 57.143 0.00 0.00 0.00 3.20
908 1080 1.614583 CGAAGGAGAGGGTCAGTGAGA 60.615 57.143 0.00 0.00 0.00 3.27
988 1160 3.845398 GGGATGATCATCTTGGATCCTCT 59.155 47.826 29.85 0.00 42.41 3.69
1167 1502 1.816074 TCTTGGGTACAAACATCGCC 58.184 50.000 0.00 0.00 35.89 5.54
1169 1504 6.472163 GCATTAAATCTTGGGTACAAACATCG 59.528 38.462 0.00 0.00 35.89 3.84
1192 1553 2.436542 ACACAACAACTACACCCTAGCA 59.563 45.455 0.00 0.00 0.00 3.49
1193 1554 2.806244 CACACAACAACTACACCCTAGC 59.194 50.000 0.00 0.00 0.00 3.42
1668 2085 3.877508 GACACAGCCACTAGTTTTCAGTT 59.122 43.478 0.00 0.00 0.00 3.16
1696 2116 1.679640 GCCCCCAAATGCATCAAAAGG 60.680 52.381 0.00 0.00 0.00 3.11
2189 2624 7.918536 ACATATGGCTAATCTGATGACATTC 57.081 36.000 7.80 0.00 0.00 2.67
2254 2704 8.349245 TGTTCATTAACAAGAAACACCATACTG 58.651 33.333 0.00 0.00 42.60 2.74
2339 3594 6.282199 AGACTCCAATGTGTTCGTAACTAT 57.718 37.500 0.00 0.00 0.00 2.12
2340 3595 5.717078 AGACTCCAATGTGTTCGTAACTA 57.283 39.130 0.00 0.00 0.00 2.24
2347 3602 3.314541 ACGGTAGACTCCAATGTGTTC 57.685 47.619 0.00 0.00 0.00 3.18
2352 3607 3.254060 CACTCAACGGTAGACTCCAATG 58.746 50.000 0.00 0.00 0.00 2.82
2440 3703 4.732784 CATGGGGAACAAAAACATAGACG 58.267 43.478 0.00 0.00 0.00 4.18
2506 3803 6.012421 AGGGTAAGGATGCTCTTCTAGTTTTT 60.012 38.462 0.00 0.00 0.00 1.94
2802 4102 7.319646 AGCAGCAGAATATAGCTTACATAGTC 58.680 38.462 0.00 0.00 39.50 2.59
2806 4106 5.936956 GGAAGCAGCAGAATATAGCTTACAT 59.063 40.000 0.00 0.00 44.73 2.29
2940 4241 5.126061 ACAGCATACCATCCATCTTGAAAAC 59.874 40.000 0.00 0.00 0.00 2.43
2991 4292 3.743521 TCATTTCAGGACCTCACACTTG 58.256 45.455 0.00 0.00 0.00 3.16
3058 4359 9.381038 AGCCCTGAATATTAGATAGTAGAAACA 57.619 33.333 0.00 0.00 0.00 2.83
3070 4371 8.511604 TTTTGAGAAGAAGCCCTGAATATTAG 57.488 34.615 0.00 0.00 0.00 1.73
3105 4406 9.520515 CTGTTGGTTAATATAGCCCTGAATATT 57.479 33.333 0.00 0.00 33.82 1.28
3106 4407 8.669571 ACTGTTGGTTAATATAGCCCTGAATAT 58.330 33.333 0.00 0.00 0.00 1.28
3107 4408 8.041143 ACTGTTGGTTAATATAGCCCTGAATA 57.959 34.615 0.00 0.00 0.00 1.75
3108 4409 6.911308 ACTGTTGGTTAATATAGCCCTGAAT 58.089 36.000 0.00 0.00 0.00 2.57
3109 4410 6.157994 AGACTGTTGGTTAATATAGCCCTGAA 59.842 38.462 0.00 0.00 0.00 3.02
3110 4411 5.665812 AGACTGTTGGTTAATATAGCCCTGA 59.334 40.000 0.00 0.00 0.00 3.86
3111 4412 5.930135 AGACTGTTGGTTAATATAGCCCTG 58.070 41.667 0.00 0.00 0.00 4.45
3112 4413 7.680730 CATAGACTGTTGGTTAATATAGCCCT 58.319 38.462 0.00 0.00 0.00 5.19
3259 4561 8.629158 GGTAAATGTGGAAGTTCAATGCATATA 58.371 33.333 0.00 0.00 0.00 0.86
3289 4606 7.489113 AGAAAACAAACAAATAGTGTCAAGCAG 59.511 33.333 0.00 0.00 40.60 4.24
3483 4800 6.720112 ATATGTCAAGAACAATGGGAATGG 57.280 37.500 0.00 0.00 42.37 3.16
3495 4812 4.941263 GGTGGTTGCACTATATGTCAAGAA 59.059 41.667 0.00 0.00 0.00 2.52
3497 4814 3.309682 CGGTGGTTGCACTATATGTCAAG 59.690 47.826 0.00 0.00 0.00 3.02
3503 4820 6.041182 TGAATAGTACGGTGGTTGCACTATAT 59.959 38.462 0.00 0.00 32.61 0.86
3514 4831 4.126437 TGCATCAATGAATAGTACGGTGG 58.874 43.478 0.00 0.00 0.00 4.61
3517 4834 4.213906 TGCATGCATCAATGAATAGTACGG 59.786 41.667 18.46 0.00 0.00 4.02
3544 4861 4.344448 GAGCATCTCTACAGTACAACGAC 58.656 47.826 0.00 0.00 0.00 4.34
3605 4947 5.186198 AGGCCTACAAGAACATGTTATGTC 58.814 41.667 24.79 14.95 44.07 3.06
3666 5011 2.224892 TGGGGATGTTCCACGAAATTCA 60.225 45.455 0.00 0.00 45.00 2.57
3712 5057 6.893958 AACTTCATGATCGTGCTAAGTAAG 57.106 37.500 17.70 13.50 0.00 2.34
3713 5058 7.667043 AAAACTTCATGATCGTGCTAAGTAA 57.333 32.000 17.70 4.07 0.00 2.24
3714 5059 8.942338 ATAAAACTTCATGATCGTGCTAAGTA 57.058 30.769 17.70 7.36 0.00 2.24
3715 5060 7.849804 ATAAAACTTCATGATCGTGCTAAGT 57.150 32.000 13.58 13.58 0.00 2.24
3749 5094 1.890876 TGCTTCGCACAGGTATTTGT 58.109 45.000 0.00 0.00 31.71 2.83
3750 5095 2.584791 GTTGCTTCGCACAGGTATTTG 58.415 47.619 0.00 0.00 38.71 2.32
3751 5096 1.196808 CGTTGCTTCGCACAGGTATTT 59.803 47.619 0.00 0.00 38.71 1.40
3752 5097 0.796312 CGTTGCTTCGCACAGGTATT 59.204 50.000 0.00 0.00 38.71 1.89
3753 5098 1.019278 CCGTTGCTTCGCACAGGTAT 61.019 55.000 0.00 0.00 38.71 2.73
3754 5099 1.666553 CCGTTGCTTCGCACAGGTA 60.667 57.895 0.00 0.00 38.71 3.08
3755 5100 2.972505 CCGTTGCTTCGCACAGGT 60.973 61.111 0.00 0.00 38.71 4.00
3756 5101 3.726517 CCCGTTGCTTCGCACAGG 61.727 66.667 0.00 0.00 38.71 4.00
3757 5102 2.664851 TCCCGTTGCTTCGCACAG 60.665 61.111 0.00 0.00 38.71 3.66
3758 5103 2.664851 CTCCCGTTGCTTCGCACA 60.665 61.111 0.00 0.00 38.71 4.57
3759 5104 2.357034 TCTCCCGTTGCTTCGCAC 60.357 61.111 0.00 0.00 38.71 5.34
3760 5105 2.357034 GTCTCCCGTTGCTTCGCA 60.357 61.111 0.00 0.00 36.47 5.10
3761 5106 1.298859 AATGTCTCCCGTTGCTTCGC 61.299 55.000 0.00 0.00 0.00 4.70
3762 5107 1.156736 AAATGTCTCCCGTTGCTTCG 58.843 50.000 0.00 0.00 0.00 3.79
3763 5108 3.643159 AAAAATGTCTCCCGTTGCTTC 57.357 42.857 0.00 0.00 0.00 3.86
3764 5109 3.886505 TGTAAAAATGTCTCCCGTTGCTT 59.113 39.130 0.00 0.00 0.00 3.91
3765 5110 3.252458 GTGTAAAAATGTCTCCCGTTGCT 59.748 43.478 0.00 0.00 0.00 3.91
3766 5111 3.561503 GTGTAAAAATGTCTCCCGTTGC 58.438 45.455 0.00 0.00 0.00 4.17
3767 5112 3.249080 ACGTGTAAAAATGTCTCCCGTTG 59.751 43.478 0.00 0.00 0.00 4.10
3768 5113 3.469739 ACGTGTAAAAATGTCTCCCGTT 58.530 40.909 0.00 0.00 0.00 4.44
3769 5114 3.062042 GACGTGTAAAAATGTCTCCCGT 58.938 45.455 0.00 0.00 33.97 5.28
3770 5115 3.323243 AGACGTGTAAAAATGTCTCCCG 58.677 45.455 0.00 0.00 41.58 5.14
3774 5119 4.154195 GGCATGAGACGTGTAAAAATGTCT 59.846 41.667 0.00 0.00 46.69 3.41
3775 5120 4.154195 AGGCATGAGACGTGTAAAAATGTC 59.846 41.667 0.00 0.00 36.51 3.06
3776 5121 4.072131 AGGCATGAGACGTGTAAAAATGT 58.928 39.130 0.00 0.00 0.00 2.71
3777 5122 4.651994 GAGGCATGAGACGTGTAAAAATG 58.348 43.478 0.00 0.00 0.00 2.32
3778 5123 3.370978 CGAGGCATGAGACGTGTAAAAAT 59.629 43.478 0.00 0.00 0.00 1.82
3779 5124 2.734606 CGAGGCATGAGACGTGTAAAAA 59.265 45.455 0.00 0.00 0.00 1.94
3780 5125 2.333926 CGAGGCATGAGACGTGTAAAA 58.666 47.619 0.00 0.00 0.00 1.52
3781 5126 1.403647 CCGAGGCATGAGACGTGTAAA 60.404 52.381 0.00 0.00 0.00 2.01
3782 5127 0.172578 CCGAGGCATGAGACGTGTAA 59.827 55.000 0.00 0.00 0.00 2.41
3783 5128 0.963856 ACCGAGGCATGAGACGTGTA 60.964 55.000 0.00 0.00 0.00 2.90
3784 5129 0.963856 TACCGAGGCATGAGACGTGT 60.964 55.000 0.00 0.00 0.00 4.49
3785 5130 0.172578 TTACCGAGGCATGAGACGTG 59.827 55.000 0.00 0.00 0.00 4.49
3786 5131 0.892755 TTTACCGAGGCATGAGACGT 59.107 50.000 0.00 0.00 0.00 4.34
3787 5132 2.225068 ATTTACCGAGGCATGAGACG 57.775 50.000 0.00 0.00 0.00 4.18
3788 5133 2.872858 GGAATTTACCGAGGCATGAGAC 59.127 50.000 0.00 0.00 0.00 3.36
3789 5134 3.194005 GGAATTTACCGAGGCATGAGA 57.806 47.619 0.00 0.00 0.00 3.27
3800 5145 3.069289 ACAAGGACGAACGGAATTTACC 58.931 45.455 0.00 0.00 0.00 2.85
3801 5146 3.992427 AGACAAGGACGAACGGAATTTAC 59.008 43.478 0.00 0.00 0.00 2.01
3802 5147 4.240096 GAGACAAGGACGAACGGAATTTA 58.760 43.478 0.00 0.00 0.00 1.40
3803 5148 3.064931 GAGACAAGGACGAACGGAATTT 58.935 45.455 0.00 0.00 0.00 1.82
3804 5149 2.036733 TGAGACAAGGACGAACGGAATT 59.963 45.455 0.00 0.00 0.00 2.17
3805 5150 1.616865 TGAGACAAGGACGAACGGAAT 59.383 47.619 0.00 0.00 0.00 3.01
3806 5151 1.000607 CTGAGACAAGGACGAACGGAA 60.001 52.381 0.00 0.00 0.00 4.30
3807 5152 0.596577 CTGAGACAAGGACGAACGGA 59.403 55.000 0.00 0.00 0.00 4.69
3808 5153 0.314302 ACTGAGACAAGGACGAACGG 59.686 55.000 0.00 0.00 0.00 4.44
3809 5154 1.666311 GGACTGAGACAAGGACGAACG 60.666 57.143 0.00 0.00 0.00 3.95
3810 5155 1.666311 CGGACTGAGACAAGGACGAAC 60.666 57.143 0.00 0.00 0.00 3.95
3811 5156 0.596577 CGGACTGAGACAAGGACGAA 59.403 55.000 0.00 0.00 0.00 3.85
3812 5157 1.863662 GCGGACTGAGACAAGGACGA 61.864 60.000 0.00 0.00 0.00 4.20
3813 5158 1.444553 GCGGACTGAGACAAGGACG 60.445 63.158 0.00 0.00 0.00 4.79
3814 5159 1.444553 CGCGGACTGAGACAAGGAC 60.445 63.158 0.00 0.00 0.00 3.85
3815 5160 2.962569 CGCGGACTGAGACAAGGA 59.037 61.111 0.00 0.00 0.00 3.36
3816 5161 2.811317 GCGCGGACTGAGACAAGG 60.811 66.667 8.83 0.00 0.00 3.61
3817 5162 1.803519 GAGCGCGGACTGAGACAAG 60.804 63.158 8.83 0.00 0.00 3.16
3818 5163 2.258591 GAGCGCGGACTGAGACAA 59.741 61.111 8.83 0.00 0.00 3.18
3819 5164 3.749064 GGAGCGCGGACTGAGACA 61.749 66.667 8.83 0.00 0.00 3.41
3820 5165 1.725557 TATGGAGCGCGGACTGAGAC 61.726 60.000 8.83 0.00 0.00 3.36
3821 5166 0.823769 ATATGGAGCGCGGACTGAGA 60.824 55.000 8.83 0.00 0.00 3.27
3822 5167 0.881796 TATATGGAGCGCGGACTGAG 59.118 55.000 8.83 0.00 0.00 3.35
3823 5168 1.545841 ATATATGGAGCGCGGACTGA 58.454 50.000 8.83 0.00 0.00 3.41
3824 5169 3.717400 ATATATATGGAGCGCGGACTG 57.283 47.619 8.83 0.00 0.00 3.51
3825 5170 6.406692 AAATATATATATGGAGCGCGGACT 57.593 37.500 8.83 0.00 0.00 3.85
3826 5171 7.478520 AAAAATATATATATGGAGCGCGGAC 57.521 36.000 8.83 0.00 0.00 4.79
3827 5172 8.418662 ACTAAAAATATATATATGGAGCGCGGA 58.581 33.333 8.83 0.00 0.00 5.54
3828 5173 8.589335 ACTAAAAATATATATATGGAGCGCGG 57.411 34.615 8.83 0.00 0.00 6.46
3829 5174 9.849607 CAACTAAAAATATATATATGGAGCGCG 57.150 33.333 0.00 0.00 0.00 6.86
3845 5190 9.314133 AGAAAGGAAAGCTATCCAACTAAAAAT 57.686 29.630 0.00 0.00 42.27 1.82
3846 5191 8.706322 AGAAAGGAAAGCTATCCAACTAAAAA 57.294 30.769 0.00 0.00 42.27 1.94
3847 5192 8.706322 AAGAAAGGAAAGCTATCCAACTAAAA 57.294 30.769 0.00 0.00 42.27 1.52
3848 5193 7.942341 TGAAGAAAGGAAAGCTATCCAACTAAA 59.058 33.333 0.00 0.00 42.27 1.85
3849 5194 7.458397 TGAAGAAAGGAAAGCTATCCAACTAA 58.542 34.615 0.00 0.00 42.27 2.24
3850 5195 7.016153 TGAAGAAAGGAAAGCTATCCAACTA 57.984 36.000 0.00 0.00 42.27 2.24
3851 5196 5.880901 TGAAGAAAGGAAAGCTATCCAACT 58.119 37.500 0.00 0.00 42.27 3.16
3852 5197 6.765915 ATGAAGAAAGGAAAGCTATCCAAC 57.234 37.500 0.00 0.00 42.27 3.77
3853 5198 7.121759 CAGAATGAAGAAAGGAAAGCTATCCAA 59.878 37.037 0.00 0.00 39.55 3.53
3854 5199 6.600822 CAGAATGAAGAAAGGAAAGCTATCCA 59.399 38.462 0.00 0.00 39.55 3.41
3855 5200 6.601217 ACAGAATGAAGAAAGGAAAGCTATCC 59.399 38.462 0.00 0.00 39.69 2.59
3856 5201 7.622893 ACAGAATGAAGAAAGGAAAGCTATC 57.377 36.000 0.00 0.00 39.69 2.08
3857 5202 9.520515 TTTACAGAATGAAGAAAGGAAAGCTAT 57.479 29.630 0.00 0.00 39.69 2.97
3858 5203 8.784043 GTTTACAGAATGAAGAAAGGAAAGCTA 58.216 33.333 0.00 0.00 39.69 3.32
3859 5204 7.503902 AGTTTACAGAATGAAGAAAGGAAAGCT 59.496 33.333 0.00 0.00 39.69 3.74
3860 5205 7.592903 CAGTTTACAGAATGAAGAAAGGAAAGC 59.407 37.037 0.00 0.00 39.69 3.51
3861 5206 8.078596 CCAGTTTACAGAATGAAGAAAGGAAAG 58.921 37.037 0.00 0.00 39.69 2.62
3862 5207 7.777910 TCCAGTTTACAGAATGAAGAAAGGAAA 59.222 33.333 0.00 0.00 39.69 3.13
3863 5208 7.287061 TCCAGTTTACAGAATGAAGAAAGGAA 58.713 34.615 0.00 0.00 39.69 3.36
3864 5209 6.837312 TCCAGTTTACAGAATGAAGAAAGGA 58.163 36.000 0.00 0.00 39.69 3.36
3865 5210 7.693969 ATCCAGTTTACAGAATGAAGAAAGG 57.306 36.000 0.00 0.00 39.69 3.11
3866 5211 8.571336 ACAATCCAGTTTACAGAATGAAGAAAG 58.429 33.333 0.00 0.00 39.69 2.62
3867 5212 8.463930 ACAATCCAGTTTACAGAATGAAGAAA 57.536 30.769 0.00 0.00 39.69 2.52
3868 5213 8.352201 CAACAATCCAGTTTACAGAATGAAGAA 58.648 33.333 0.00 0.00 39.69 2.52
3869 5214 7.502226 ACAACAATCCAGTTTACAGAATGAAGA 59.498 33.333 0.00 0.00 39.69 2.87
3870 5215 7.592533 CACAACAATCCAGTTTACAGAATGAAG 59.407 37.037 0.00 0.00 39.69 3.02
3871 5216 7.068103 ACACAACAATCCAGTTTACAGAATGAA 59.932 33.333 0.00 0.00 39.69 2.57
3872 5217 6.545666 ACACAACAATCCAGTTTACAGAATGA 59.454 34.615 0.00 0.00 39.69 2.57
3873 5218 6.738114 ACACAACAATCCAGTTTACAGAATG 58.262 36.000 0.00 0.00 46.00 2.67
3874 5219 6.959639 ACACAACAATCCAGTTTACAGAAT 57.040 33.333 0.00 0.00 0.00 2.40
3875 5220 6.405286 CCAACACAACAATCCAGTTTACAGAA 60.405 38.462 0.00 0.00 0.00 3.02
3876 5221 5.067153 CCAACACAACAATCCAGTTTACAGA 59.933 40.000 0.00 0.00 0.00 3.41
3877 5222 5.163561 ACCAACACAACAATCCAGTTTACAG 60.164 40.000 0.00 0.00 0.00 2.74
3878 5223 4.707448 ACCAACACAACAATCCAGTTTACA 59.293 37.500 0.00 0.00 0.00 2.41
3879 5224 5.257082 ACCAACACAACAATCCAGTTTAC 57.743 39.130 0.00 0.00 0.00 2.01
3880 5225 5.394663 CCAACCAACACAACAATCCAGTTTA 60.395 40.000 0.00 0.00 0.00 2.01
3881 5226 4.502962 CAACCAACACAACAATCCAGTTT 58.497 39.130 0.00 0.00 0.00 2.66
3882 5227 3.118811 CCAACCAACACAACAATCCAGTT 60.119 43.478 0.00 0.00 0.00 3.16
3883 5228 2.430332 CCAACCAACACAACAATCCAGT 59.570 45.455 0.00 0.00 0.00 4.00
3884 5229 2.430332 ACCAACCAACACAACAATCCAG 59.570 45.455 0.00 0.00 0.00 3.86
3885 5230 2.461695 ACCAACCAACACAACAATCCA 58.538 42.857 0.00 0.00 0.00 3.41
3886 5231 3.118956 TGAACCAACCAACACAACAATCC 60.119 43.478 0.00 0.00 0.00 3.01
3887 5232 4.111916 CTGAACCAACCAACACAACAATC 58.888 43.478 0.00 0.00 0.00 2.67
3888 5233 3.513515 ACTGAACCAACCAACACAACAAT 59.486 39.130 0.00 0.00 0.00 2.71
3889 5234 2.894126 ACTGAACCAACCAACACAACAA 59.106 40.909 0.00 0.00 0.00 2.83
3890 5235 2.520069 ACTGAACCAACCAACACAACA 58.480 42.857 0.00 0.00 0.00 3.33
3891 5236 3.488553 GCTACTGAACCAACCAACACAAC 60.489 47.826 0.00 0.00 0.00 3.32
3892 5237 2.685897 GCTACTGAACCAACCAACACAA 59.314 45.455 0.00 0.00 0.00 3.33
3893 5238 2.294074 GCTACTGAACCAACCAACACA 58.706 47.619 0.00 0.00 0.00 3.72
3894 5239 2.290641 CTGCTACTGAACCAACCAACAC 59.709 50.000 0.00 0.00 0.00 3.32
3895 5240 2.571212 CTGCTACTGAACCAACCAACA 58.429 47.619 0.00 0.00 0.00 3.33
3896 5241 1.266989 GCTGCTACTGAACCAACCAAC 59.733 52.381 0.00 0.00 0.00 3.77
3897 5242 1.142870 AGCTGCTACTGAACCAACCAA 59.857 47.619 0.00 0.00 0.00 3.67
3898 5243 0.764890 AGCTGCTACTGAACCAACCA 59.235 50.000 0.00 0.00 0.00 3.67
3899 5244 1.897560 AAGCTGCTACTGAACCAACC 58.102 50.000 0.90 0.00 0.00 3.77
3900 5245 2.605580 GCAAAGCTGCTACTGAACCAAC 60.606 50.000 14.01 0.00 45.74 3.77
3901 5246 1.608590 GCAAAGCTGCTACTGAACCAA 59.391 47.619 14.01 0.00 45.74 3.67
3902 5247 1.238439 GCAAAGCTGCTACTGAACCA 58.762 50.000 14.01 0.00 45.74 3.67
3921 5266 0.671251 GATGAGTCCCCAGCGAGTAG 59.329 60.000 0.00 0.00 0.00 2.57
3922 5267 0.755698 GGATGAGTCCCCAGCGAGTA 60.756 60.000 0.00 0.00 38.69 2.59
3923 5268 2.060980 GGATGAGTCCCCAGCGAGT 61.061 63.158 0.00 0.00 38.69 4.18
3924 5269 1.333636 AAGGATGAGTCCCCAGCGAG 61.334 60.000 0.00 0.00 46.34 5.03
3925 5270 0.909610 AAAGGATGAGTCCCCAGCGA 60.910 55.000 0.00 0.00 46.34 4.93
3926 5271 0.462759 GAAAGGATGAGTCCCCAGCG 60.463 60.000 2.07 0.00 46.34 5.18
3927 5272 0.915364 AGAAAGGATGAGTCCCCAGC 59.085 55.000 2.07 0.00 46.34 4.85
3928 5273 1.211457 CCAGAAAGGATGAGTCCCCAG 59.789 57.143 2.07 0.00 46.34 4.45
3929 5274 1.289160 CCAGAAAGGATGAGTCCCCA 58.711 55.000 2.07 0.00 46.34 4.96
3930 5275 0.106967 GCCAGAAAGGATGAGTCCCC 60.107 60.000 0.00 0.00 46.34 4.81
3931 5276 0.106967 GGCCAGAAAGGATGAGTCCC 60.107 60.000 0.00 0.00 46.34 4.46
3932 5277 0.620556 TGGCCAGAAAGGATGAGTCC 59.379 55.000 0.00 0.00 45.45 3.85
3933 5278 1.743996 GTGGCCAGAAAGGATGAGTC 58.256 55.000 5.11 0.00 41.22 3.36
3934 5279 0.036010 CGTGGCCAGAAAGGATGAGT 60.036 55.000 5.11 0.00 41.22 3.41
3935 5280 0.036010 ACGTGGCCAGAAAGGATGAG 60.036 55.000 5.11 0.00 41.22 2.90
3936 5281 0.036388 GACGTGGCCAGAAAGGATGA 60.036 55.000 5.11 0.00 41.22 2.92
3937 5282 1.361668 CGACGTGGCCAGAAAGGATG 61.362 60.000 5.11 0.00 41.22 3.51
3938 5283 1.079127 CGACGTGGCCAGAAAGGAT 60.079 57.895 5.11 0.00 41.22 3.24
3939 5284 2.342279 CGACGTGGCCAGAAAGGA 59.658 61.111 5.11 0.00 41.22 3.36
3940 5285 2.027625 GACGACGTGGCCAGAAAGG 61.028 63.158 5.11 0.00 41.84 3.11
3941 5286 1.300620 TGACGACGTGGCCAGAAAG 60.301 57.895 5.11 0.22 0.00 2.62
3942 5287 1.593209 GTGACGACGTGGCCAGAAA 60.593 57.895 5.11 0.00 0.00 2.52
3943 5288 2.028484 GTGACGACGTGGCCAGAA 59.972 61.111 5.11 0.00 0.00 3.02
3944 5289 4.337060 CGTGACGACGTGGCCAGA 62.337 66.667 5.11 0.00 40.91 3.86
3953 5298 1.442769 TCCTACACCTACGTGACGAC 58.557 55.000 13.70 0.00 43.14 4.34
3954 5299 2.408271 ATCCTACACCTACGTGACGA 57.592 50.000 13.70 0.00 43.14 4.20
3955 5300 4.825546 ATAATCCTACACCTACGTGACG 57.174 45.455 2.24 2.24 43.14 4.35
3956 5301 5.287226 CCAATAATCCTACACCTACGTGAC 58.713 45.833 0.00 0.00 43.14 3.67
3957 5302 4.342951 CCCAATAATCCTACACCTACGTGA 59.657 45.833 0.00 0.00 43.14 4.35
3958 5303 4.502604 CCCCAATAATCCTACACCTACGTG 60.503 50.000 0.00 0.00 46.11 4.49
3959 5304 3.644738 CCCCAATAATCCTACACCTACGT 59.355 47.826 0.00 0.00 0.00 3.57
3960 5305 3.644738 ACCCCAATAATCCTACACCTACG 59.355 47.826 0.00 0.00 0.00 3.51
3961 5306 6.464892 GGTTACCCCAATAATCCTACACCTAC 60.465 46.154 0.00 0.00 0.00 3.18
3962 5307 5.608015 GGTTACCCCAATAATCCTACACCTA 59.392 44.000 0.00 0.00 0.00 3.08
3963 5308 4.414514 GGTTACCCCAATAATCCTACACCT 59.585 45.833 0.00 0.00 0.00 4.00
3964 5309 4.722220 GGTTACCCCAATAATCCTACACC 58.278 47.826 0.00 0.00 0.00 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.