Multiple sequence alignment - TraesCS3D01G335500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G335500 chr3D 100.000 4717 0 0 1 4717 447559283 447563999 0.000000e+00 8711
1 TraesCS3D01G335500 chr3D 86.396 713 80 9 2980 3688 52812426 52811727 0.000000e+00 763
2 TraesCS3D01G335500 chr3D 82.099 324 42 3 4392 4714 447578666 447578974 3.620000e-66 263
3 TraesCS3D01G335500 chr3D 95.333 150 7 0 1 150 208564936 208565085 6.100000e-59 239
4 TraesCS3D01G335500 chr3D 96.875 128 4 0 1078 1205 52816697 52816570 1.030000e-51 215
5 TraesCS3D01G335500 chr3D 81.761 159 28 1 13 170 539501353 539501511 1.070000e-26 132
6 TraesCS3D01G335500 chr3B 94.268 2111 95 18 2116 4214 586696232 586698328 0.000000e+00 3205
7 TraesCS3D01G335500 chr3B 87.578 1610 139 29 2109 3688 83472940 83471362 0.000000e+00 1808
8 TraesCS3D01G335500 chr3B 89.126 1030 50 34 610 1622 586694760 586695744 0.000000e+00 1225
9 TraesCS3D01G335500 chr3B 86.284 802 92 11 2897 3688 83468447 83467654 0.000000e+00 856
10 TraesCS3D01G335500 chr3B 95.599 409 15 2 4307 4714 586698462 586698868 0.000000e+00 652
11 TraesCS3D01G335500 chr3B 87.368 475 37 17 1571 2041 586695760 586696215 1.500000e-144 523
12 TraesCS3D01G335500 chr3B 86.910 466 43 11 1594 2054 83473416 83472964 1.510000e-139 507
13 TraesCS3D01G335500 chr3B 84.141 454 35 18 1079 1515 83473851 83473418 5.680000e-109 405
14 TraesCS3D01G335500 chr3B 84.116 447 24 16 189 605 586694219 586694648 5.720000e-104 388
15 TraesCS3D01G335500 chr3B 82.651 415 47 17 3777 4182 83467658 83467260 1.260000e-90 344
16 TraesCS3D01G335500 chr3B 83.385 325 38 3 4391 4714 586732113 586732422 2.150000e-73 287
17 TraesCS3D01G335500 chr3B 80.675 326 33 17 3777 4086 83471366 83471055 4.750000e-55 226
18 TraesCS3D01G335500 chr3B 88.732 142 11 3 2658 2794 83468591 83468450 8.120000e-38 169
19 TraesCS3D01G335500 chr3A 88.573 2529 151 68 604 3075 588933492 588935939 0.000000e+00 2942
20 TraesCS3D01G335500 chr3A 88.116 1035 102 14 2652 3669 64325709 64324679 0.000000e+00 1210
21 TraesCS3D01G335500 chr3A 97.213 574 16 0 3121 3694 588936015 588936588 0.000000e+00 972
22 TraesCS3D01G335500 chr3A 92.600 500 21 9 3756 4254 588936564 588937048 0.000000e+00 704
23 TraesCS3D01G335500 chr3A 89.172 471 35 7 4254 4714 588937083 588937547 1.470000e-159 573
24 TraesCS3D01G335500 chr3A 79.227 828 84 43 1078 1886 64326468 64325710 3.280000e-136 496
25 TraesCS3D01G335500 chr3A 90.432 324 31 0 4391 4714 589188265 589188588 1.210000e-115 427
26 TraesCS3D01G335500 chr3A 84.581 454 29 18 173 605 588932990 588933423 3.400000e-111 412
27 TraesCS3D01G335500 chr3A 82.192 292 34 13 3796 4085 64320007 64319732 7.890000e-58 235
28 TraesCS3D01G335500 chrUn 86.396 713 80 9 2980 3688 304503119 304503818 0.000000e+00 763
29 TraesCS3D01G335500 chr1D 78.221 551 92 18 3139 3678 6219575 6220108 1.270000e-85 327
30 TraesCS3D01G335500 chr1D 95.266 169 8 0 1 169 477424508 477424676 7.780000e-68 268
31 TraesCS3D01G335500 chr1D 87.692 130 15 1 1060 1189 6217943 6218071 2.940000e-32 150
32 TraesCS3D01G335500 chr1D 77.987 159 34 1 13 170 465939461 465939619 1.080000e-16 99
33 TraesCS3D01G335500 chr5D 92.754 138 10 0 13 150 444849682 444849819 2.880000e-47 200
34 TraesCS3D01G335500 chr5D 92.754 138 10 0 13 150 530645052 530645189 2.880000e-47 200
35 TraesCS3D01G335500 chr2D 82.734 139 23 1 13 150 69264488 69264626 6.410000e-24 122
36 TraesCS3D01G335500 chr7D 79.245 159 31 2 13 170 503805675 503805518 4.990000e-20 110
37 TraesCS3D01G335500 chr5B 82.645 121 16 4 59 179 455492467 455492352 8.350000e-18 102


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G335500 chr3D 447559283 447563999 4716 False 8711.000000 8711 100.000000 1 4717 1 chr3D.!!$F2 4716
1 TraesCS3D01G335500 chr3D 52811727 52812426 699 True 763.000000 763 86.396000 2980 3688 1 chr3D.!!$R1 708
2 TraesCS3D01G335500 chr3B 586694219 586698868 4649 False 1198.600000 3205 90.095400 189 4714 5 chr3B.!!$F2 4525
3 TraesCS3D01G335500 chr3B 83467260 83473851 6591 True 616.428571 1808 85.281571 1079 4182 7 chr3B.!!$R1 3103
4 TraesCS3D01G335500 chr3A 588932990 588937547 4557 False 1120.600000 2942 90.427800 173 4714 5 chr3A.!!$F2 4541
5 TraesCS3D01G335500 chr3A 64324679 64326468 1789 True 853.000000 1210 83.671500 1078 3669 2 chr3A.!!$R2 2591
6 TraesCS3D01G335500 chrUn 304503119 304503818 699 False 763.000000 763 86.396000 2980 3688 1 chrUn.!!$F1 708
7 TraesCS3D01G335500 chr1D 6217943 6220108 2165 False 238.500000 327 82.956500 1060 3678 2 chr1D.!!$F3 2618

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
53 54 0.030908 CCTCTTCATCCGACGGCTAC 59.969 60.0 9.66 0.0 0.00 3.58 F
392 407 0.109342 CAGCACCACTCCTTCCAACT 59.891 55.0 0.00 0.0 0.00 3.16 F
397 412 0.771127 CCACTCCTTCCAACTTCCCA 59.229 55.0 0.00 0.0 0.00 4.37 F
1631 2351 0.579630 TTTGTGTTGTCGCTACGCAG 59.420 50.0 7.43 0.0 37.33 5.18 F
2217 2966 1.384525 TTTACCGCACAGCTTGTTGT 58.615 45.0 0.00 0.0 0.00 3.32 F
3108 4254 0.395036 TTGGGTGTGTGGTCAAGTGG 60.395 55.0 0.00 0.0 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1229 1864 2.098443 GCAGAGAAAGAGTAGACGGAGG 59.902 54.545 0.0 0.0 0.0 4.30 R
1277 1915 2.262266 AGGAGAAAGAGAAGGGGAGG 57.738 55.000 0.0 0.0 0.0 4.30 R
2066 2815 2.586648 AGTTGTAAGAGGGGCAAAGG 57.413 50.000 0.0 0.0 0.0 3.11 R
3092 4236 0.823356 ATGCCACTTGACCACACACC 60.823 55.000 0.0 0.0 0.0 4.16 R
3437 4591 0.896940 TAGGCTTCTTGTCGGTCGGT 60.897 55.000 0.0 0.0 0.0 4.69 R
4203 9082 1.095807 GGAGGCCTGGCGAACATAAC 61.096 60.000 12.0 0.0 0.0 1.89 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.710209 GCTGGAGGGCATACTATTCAT 57.290 47.619 0.00 0.00 0.00 2.57
21 22 4.026356 GCTGGAGGGCATACTATTCATT 57.974 45.455 0.00 0.00 0.00 2.57
22 23 3.755378 GCTGGAGGGCATACTATTCATTG 59.245 47.826 0.00 0.00 0.00 2.82
23 24 4.747931 GCTGGAGGGCATACTATTCATTGT 60.748 45.833 0.00 0.00 0.00 2.71
24 25 5.513094 GCTGGAGGGCATACTATTCATTGTA 60.513 44.000 0.00 0.00 0.00 2.41
25 26 6.114187 TGGAGGGCATACTATTCATTGTAG 57.886 41.667 0.00 0.00 0.00 2.74
26 27 4.938226 GGAGGGCATACTATTCATTGTAGC 59.062 45.833 0.00 0.00 0.00 3.58
27 28 5.513094 GGAGGGCATACTATTCATTGTAGCA 60.513 44.000 0.00 0.00 0.00 3.49
28 29 5.555017 AGGGCATACTATTCATTGTAGCAG 58.445 41.667 0.00 0.00 0.00 4.24
29 30 5.072329 AGGGCATACTATTCATTGTAGCAGT 59.928 40.000 0.00 0.00 0.00 4.40
30 31 5.180117 GGGCATACTATTCATTGTAGCAGTG 59.820 44.000 0.00 0.00 0.00 3.66
31 32 5.760253 GGCATACTATTCATTGTAGCAGTGT 59.240 40.000 0.00 0.00 0.00 3.55
32 33 6.073548 GGCATACTATTCATTGTAGCAGTGTC 60.074 42.308 0.00 0.00 0.00 3.67
33 34 6.479990 GCATACTATTCATTGTAGCAGTGTCA 59.520 38.462 0.00 0.00 0.00 3.58
34 35 7.517417 GCATACTATTCATTGTAGCAGTGTCAC 60.517 40.741 0.00 0.00 0.00 3.67
35 36 5.178797 ACTATTCATTGTAGCAGTGTCACC 58.821 41.667 0.00 0.00 0.00 4.02
36 37 3.769739 TTCATTGTAGCAGTGTCACCT 57.230 42.857 0.00 0.00 0.00 4.00
37 38 3.319137 TCATTGTAGCAGTGTCACCTC 57.681 47.619 0.00 0.00 0.00 3.85
38 39 2.899900 TCATTGTAGCAGTGTCACCTCT 59.100 45.455 0.00 0.00 0.00 3.69
39 40 3.324846 TCATTGTAGCAGTGTCACCTCTT 59.675 43.478 0.00 0.00 0.00 2.85
40 41 3.386768 TTGTAGCAGTGTCACCTCTTC 57.613 47.619 0.00 0.00 0.00 2.87
41 42 2.316108 TGTAGCAGTGTCACCTCTTCA 58.684 47.619 0.00 0.00 0.00 3.02
42 43 2.899900 TGTAGCAGTGTCACCTCTTCAT 59.100 45.455 0.00 0.00 0.00 2.57
43 44 2.758736 AGCAGTGTCACCTCTTCATC 57.241 50.000 0.00 0.00 0.00 2.92
44 45 1.277557 AGCAGTGTCACCTCTTCATCC 59.722 52.381 0.00 0.00 0.00 3.51
45 46 2.001812 CAGTGTCACCTCTTCATCCG 57.998 55.000 0.00 0.00 0.00 4.18
46 47 1.546029 CAGTGTCACCTCTTCATCCGA 59.454 52.381 0.00 0.00 0.00 4.55
47 48 1.546476 AGTGTCACCTCTTCATCCGAC 59.454 52.381 0.00 0.00 0.00 4.79
48 49 0.526211 TGTCACCTCTTCATCCGACG 59.474 55.000 0.00 0.00 0.00 5.12
49 50 0.179134 GTCACCTCTTCATCCGACGG 60.179 60.000 7.84 7.84 0.00 4.79
50 51 1.519455 CACCTCTTCATCCGACGGC 60.519 63.158 9.66 0.00 0.00 5.68
51 52 1.682684 ACCTCTTCATCCGACGGCT 60.683 57.895 9.66 0.00 0.00 5.52
52 53 0.395311 ACCTCTTCATCCGACGGCTA 60.395 55.000 9.66 0.00 0.00 3.93
53 54 0.030908 CCTCTTCATCCGACGGCTAC 59.969 60.000 9.66 0.00 0.00 3.58
72 73 3.620785 GCCATCCGAGGGCGAGAT 61.621 66.667 8.58 0.00 42.39 2.75
73 74 2.653702 CCATCCGAGGGCGAGATC 59.346 66.667 0.00 0.00 40.82 2.75
74 75 2.653702 CATCCGAGGGCGAGATCC 59.346 66.667 0.00 0.00 40.82 3.36
75 76 2.986413 ATCCGAGGGCGAGATCCG 60.986 66.667 0.00 0.00 40.82 4.18
76 77 3.493166 ATCCGAGGGCGAGATCCGA 62.493 63.158 7.64 0.00 41.76 4.55
84 85 4.315122 CGAGATCCGACGGCCGAG 62.315 72.222 35.90 24.42 41.76 4.63
85 86 2.900838 GAGATCCGACGGCCGAGA 60.901 66.667 35.90 24.79 41.76 4.04
86 87 2.439701 AGATCCGACGGCCGAGAA 60.440 61.111 35.90 14.60 41.76 2.87
87 88 2.001361 GAGATCCGACGGCCGAGAAA 62.001 60.000 35.90 15.00 41.76 2.52
88 89 1.153706 GATCCGACGGCCGAGAAAA 60.154 57.895 35.90 13.41 41.76 2.29
89 90 1.419107 GATCCGACGGCCGAGAAAAC 61.419 60.000 35.90 14.86 41.76 2.43
90 91 2.162338 ATCCGACGGCCGAGAAAACA 62.162 55.000 35.90 8.80 41.76 2.83
91 92 1.740296 CCGACGGCCGAGAAAACAT 60.740 57.895 35.90 6.14 41.76 2.71
92 93 1.693083 CCGACGGCCGAGAAAACATC 61.693 60.000 35.90 15.48 41.76 3.06
93 94 1.011968 CGACGGCCGAGAAAACATCA 61.012 55.000 35.90 0.00 41.76 3.07
94 95 1.153353 GACGGCCGAGAAAACATCAA 58.847 50.000 35.90 0.00 0.00 2.57
95 96 1.128692 GACGGCCGAGAAAACATCAAG 59.871 52.381 35.90 0.00 0.00 3.02
96 97 1.156736 CGGCCGAGAAAACATCAAGT 58.843 50.000 24.07 0.00 0.00 3.16
97 98 2.289195 ACGGCCGAGAAAACATCAAGTA 60.289 45.455 35.90 0.00 0.00 2.24
98 99 2.739913 CGGCCGAGAAAACATCAAGTAA 59.260 45.455 24.07 0.00 0.00 2.24
99 100 3.187637 CGGCCGAGAAAACATCAAGTAAA 59.812 43.478 24.07 0.00 0.00 2.01
100 101 4.473199 GGCCGAGAAAACATCAAGTAAAC 58.527 43.478 0.00 0.00 0.00 2.01
101 102 4.148891 GCCGAGAAAACATCAAGTAAACG 58.851 43.478 0.00 0.00 0.00 3.60
102 103 4.084223 GCCGAGAAAACATCAAGTAAACGA 60.084 41.667 0.00 0.00 0.00 3.85
103 104 5.390567 GCCGAGAAAACATCAAGTAAACGAT 60.391 40.000 0.00 0.00 0.00 3.73
104 105 6.241385 CCGAGAAAACATCAAGTAAACGATC 58.759 40.000 0.00 0.00 0.00 3.69
105 106 6.241385 CGAGAAAACATCAAGTAAACGATCC 58.759 40.000 0.00 0.00 0.00 3.36
106 107 6.165659 AGAAAACATCAAGTAAACGATCCG 57.834 37.500 0.00 0.00 0.00 4.18
107 108 5.929992 AGAAAACATCAAGTAAACGATCCGA 59.070 36.000 0.00 0.00 0.00 4.55
108 109 5.526010 AAACATCAAGTAAACGATCCGAC 57.474 39.130 0.00 0.00 0.00 4.79
109 110 3.176708 ACATCAAGTAAACGATCCGACG 58.823 45.455 0.00 0.00 39.31 5.12
110 111 2.267188 TCAAGTAAACGATCCGACGG 57.733 50.000 7.84 7.84 37.61 4.79
111 112 0.643820 CAAGTAAACGATCCGACGGC 59.356 55.000 9.66 0.00 37.61 5.68
112 113 0.459063 AAGTAAACGATCCGACGGCC 60.459 55.000 9.66 2.30 37.61 6.13
113 114 2.102749 TAAACGATCCGACGGCCG 59.897 61.111 26.86 26.86 37.61 6.13
114 115 2.405805 TAAACGATCCGACGGCCGA 61.406 57.895 35.90 10.13 41.76 5.54
115 116 1.932011 TAAACGATCCGACGGCCGAA 61.932 55.000 35.90 14.60 41.76 4.30
116 117 2.768503 AAACGATCCGACGGCCGAAA 62.769 55.000 35.90 14.20 41.76 3.46
117 118 2.954868 CGATCCGACGGCCGAAAG 60.955 66.667 35.90 21.35 41.76 2.62
118 119 2.183555 GATCCGACGGCCGAAAGT 59.816 61.111 35.90 9.58 41.76 2.66
119 120 1.877165 GATCCGACGGCCGAAAGTC 60.877 63.158 35.90 18.40 41.76 3.01
123 124 2.180017 GACGGCCGAAAGTCGCTA 59.820 61.111 35.90 0.00 38.82 4.26
124 125 1.444895 GACGGCCGAAAGTCGCTAA 60.445 57.895 35.90 0.00 38.82 3.09
125 126 1.005867 ACGGCCGAAAGTCGCTAAA 60.006 52.632 35.90 0.00 38.82 1.85
126 127 1.287041 ACGGCCGAAAGTCGCTAAAC 61.287 55.000 35.90 0.00 38.82 2.01
127 128 1.012486 CGGCCGAAAGTCGCTAAACT 61.012 55.000 24.07 0.00 38.82 2.66
128 129 0.720027 GGCCGAAAGTCGCTAAACTC 59.280 55.000 0.00 0.00 38.82 3.01
129 130 1.672145 GGCCGAAAGTCGCTAAACTCT 60.672 52.381 0.00 0.00 38.82 3.24
130 131 1.390463 GCCGAAAGTCGCTAAACTCTG 59.610 52.381 0.00 0.00 38.82 3.35
131 132 2.925306 GCCGAAAGTCGCTAAACTCTGA 60.925 50.000 0.00 0.00 38.82 3.27
132 133 2.917971 CCGAAAGTCGCTAAACTCTGAG 59.082 50.000 2.45 2.45 38.82 3.35
133 134 3.366070 CCGAAAGTCGCTAAACTCTGAGA 60.366 47.826 12.44 0.00 38.82 3.27
134 135 4.227538 CGAAAGTCGCTAAACTCTGAGAA 58.772 43.478 12.44 0.00 31.14 2.87
135 136 4.088781 CGAAAGTCGCTAAACTCTGAGAAC 59.911 45.833 12.44 0.00 31.14 3.01
136 137 3.204597 AGTCGCTAAACTCTGAGAACG 57.795 47.619 12.44 7.34 0.00 3.95
137 138 2.553172 AGTCGCTAAACTCTGAGAACGT 59.447 45.455 12.44 0.00 0.00 3.99
138 139 2.909863 GTCGCTAAACTCTGAGAACGTC 59.090 50.000 12.44 2.15 0.00 4.34
139 140 2.095364 TCGCTAAACTCTGAGAACGTCC 60.095 50.000 12.44 0.00 0.00 4.79
140 141 2.351447 CGCTAAACTCTGAGAACGTCCA 60.351 50.000 12.44 0.00 0.00 4.02
141 142 3.673594 CGCTAAACTCTGAGAACGTCCAT 60.674 47.826 12.44 0.00 0.00 3.41
142 143 3.614616 GCTAAACTCTGAGAACGTCCATG 59.385 47.826 12.44 0.00 0.00 3.66
143 144 3.753294 AAACTCTGAGAACGTCCATGT 57.247 42.857 12.44 0.00 0.00 3.21
144 145 3.753294 AACTCTGAGAACGTCCATGTT 57.247 42.857 12.44 0.00 34.02 2.71
145 146 3.305398 ACTCTGAGAACGTCCATGTTC 57.695 47.619 12.44 3.79 46.78 3.18
152 153 3.166489 GAACGTCCATGTTCTCCCTAG 57.834 52.381 4.66 0.00 43.82 3.02
153 154 2.526888 ACGTCCATGTTCTCCCTAGA 57.473 50.000 0.00 0.00 0.00 2.43
154 155 3.033659 ACGTCCATGTTCTCCCTAGAT 57.966 47.619 0.00 0.00 0.00 1.98
155 156 4.180377 ACGTCCATGTTCTCCCTAGATA 57.820 45.455 0.00 0.00 0.00 1.98
156 157 4.742012 ACGTCCATGTTCTCCCTAGATAT 58.258 43.478 0.00 0.00 0.00 1.63
157 158 5.148502 ACGTCCATGTTCTCCCTAGATATT 58.851 41.667 0.00 0.00 0.00 1.28
158 159 5.602978 ACGTCCATGTTCTCCCTAGATATTT 59.397 40.000 0.00 0.00 0.00 1.40
159 160 6.781014 ACGTCCATGTTCTCCCTAGATATTTA 59.219 38.462 0.00 0.00 0.00 1.40
160 161 7.455008 ACGTCCATGTTCTCCCTAGATATTTAT 59.545 37.037 0.00 0.00 0.00 1.40
161 162 8.967918 CGTCCATGTTCTCCCTAGATATTTATA 58.032 37.037 0.00 0.00 0.00 0.98
170 171 9.889388 TCTCCCTAGATATTTATATCAGGATGG 57.111 37.037 19.17 10.66 41.21 3.51
171 172 9.667607 CTCCCTAGATATTTATATCAGGATGGT 57.332 37.037 19.17 2.41 41.21 3.55
186 187 7.206789 TCAGGATGGTACCTCATTTGAAATA 57.793 36.000 14.36 0.00 38.32 1.40
187 188 7.282585 TCAGGATGGTACCTCATTTGAAATAG 58.717 38.462 14.36 0.00 38.32 1.73
218 219 3.326880 GTCTTTTCTCTCCCCACCTACAA 59.673 47.826 0.00 0.00 0.00 2.41
219 220 3.326880 TCTTTTCTCTCCCCACCTACAAC 59.673 47.826 0.00 0.00 0.00 3.32
220 221 2.409064 TTCTCTCCCCACCTACAACA 57.591 50.000 0.00 0.00 0.00 3.33
221 222 2.409064 TCTCTCCCCACCTACAACAA 57.591 50.000 0.00 0.00 0.00 2.83
222 223 2.915869 TCTCTCCCCACCTACAACAAT 58.084 47.619 0.00 0.00 0.00 2.71
223 224 4.069312 TCTCTCCCCACCTACAACAATA 57.931 45.455 0.00 0.00 0.00 1.90
224 225 3.773119 TCTCTCCCCACCTACAACAATAC 59.227 47.826 0.00 0.00 0.00 1.89
225 226 3.517901 CTCTCCCCACCTACAACAATACA 59.482 47.826 0.00 0.00 0.00 2.29
240 241 4.406456 ACAATACATCTTGCCTTGACCAA 58.594 39.130 0.00 0.00 0.00 3.67
249 250 1.032014 GCCTTGACCAAGCAAGAACA 58.968 50.000 5.74 0.00 46.31 3.18
279 280 4.382754 GCAAATTAAGCTGAAGAAACACCG 59.617 41.667 0.00 0.00 0.00 4.94
286 287 2.737252 GCTGAAGAAACACCGGTAGAAG 59.263 50.000 6.87 0.00 0.00 2.85
334 343 0.685458 GGCCATGGCATCCTTCAAGT 60.685 55.000 36.56 0.00 44.11 3.16
345 360 1.572085 CCTTCAAGTCAGCACTGCGG 61.572 60.000 0.00 0.00 31.06 5.69
368 383 2.653115 CGAGTGAGTGCTGAGCCA 59.347 61.111 0.23 0.00 0.00 4.75
383 398 2.046507 CCAGAGCCAGCACCACTC 60.047 66.667 0.00 0.00 0.00 3.51
385 400 2.203907 AGAGCCAGCACCACTCCT 60.204 61.111 0.00 0.00 0.00 3.69
391 406 0.890996 CCAGCACCACTCCTTCCAAC 60.891 60.000 0.00 0.00 0.00 3.77
392 407 0.109342 CAGCACCACTCCTTCCAACT 59.891 55.000 0.00 0.00 0.00 3.16
393 408 0.846693 AGCACCACTCCTTCCAACTT 59.153 50.000 0.00 0.00 0.00 2.66
394 409 1.202818 AGCACCACTCCTTCCAACTTC 60.203 52.381 0.00 0.00 0.00 3.01
395 410 1.897560 CACCACTCCTTCCAACTTCC 58.102 55.000 0.00 0.00 0.00 3.46
396 411 0.771755 ACCACTCCTTCCAACTTCCC 59.228 55.000 0.00 0.00 0.00 3.97
397 412 0.771127 CCACTCCTTCCAACTTCCCA 59.229 55.000 0.00 0.00 0.00 4.37
398 413 1.271597 CCACTCCTTCCAACTTCCCAG 60.272 57.143 0.00 0.00 0.00 4.45
399 414 1.699634 CACTCCTTCCAACTTCCCAGA 59.300 52.381 0.00 0.00 0.00 3.86
400 415 1.700186 ACTCCTTCCAACTTCCCAGAC 59.300 52.381 0.00 0.00 0.00 3.51
401 416 1.699634 CTCCTTCCAACTTCCCAGACA 59.300 52.381 0.00 0.00 0.00 3.41
412 427 4.479158 ACTTCCCAGACAAAAATAGCCAA 58.521 39.130 0.00 0.00 0.00 4.52
424 439 6.176183 CAAAAATAGCCAAGGAGAGAGAGAA 58.824 40.000 0.00 0.00 0.00 2.87
435 456 5.032846 AGGAGAGAGAGAAAGAGAGAGAGA 58.967 45.833 0.00 0.00 0.00 3.10
436 457 5.130145 AGGAGAGAGAGAAAGAGAGAGAGAG 59.870 48.000 0.00 0.00 0.00 3.20
438 459 3.879892 GAGAGAGAAAGAGAGAGAGAGCC 59.120 52.174 0.00 0.00 0.00 4.70
440 461 3.624777 AGAGAAAGAGAGAGAGAGCCAG 58.375 50.000 0.00 0.00 0.00 4.85
441 462 3.266772 AGAGAAAGAGAGAGAGAGCCAGA 59.733 47.826 0.00 0.00 0.00 3.86
442 463 3.624777 AGAAAGAGAGAGAGAGCCAGAG 58.375 50.000 0.00 0.00 0.00 3.35
443 464 3.010584 AGAAAGAGAGAGAGAGCCAGAGT 59.989 47.826 0.00 0.00 0.00 3.24
444 465 4.227300 AGAAAGAGAGAGAGAGCCAGAGTA 59.773 45.833 0.00 0.00 0.00 2.59
445 466 3.560636 AGAGAGAGAGAGCCAGAGTAC 57.439 52.381 0.00 0.00 0.00 2.73
446 467 3.115390 AGAGAGAGAGAGCCAGAGTACT 58.885 50.000 0.00 0.00 0.00 2.73
448 469 4.101119 AGAGAGAGAGAGCCAGAGTACTAC 59.899 50.000 0.00 0.00 0.00 2.73
449 470 3.778075 AGAGAGAGAGCCAGAGTACTACA 59.222 47.826 0.00 0.00 0.00 2.74
456 483 1.853963 CCAGAGTACTACACCCTGCT 58.146 55.000 0.00 0.00 0.00 4.24
507 534 4.047059 CTGCAAGCCTTGGCACGG 62.047 66.667 14.54 5.50 35.86 4.94
564 594 1.260538 TTGGCTCCTCTGTCGCAGAT 61.261 55.000 9.47 0.00 39.92 2.90
576 606 2.427453 TGTCGCAGATACCTCTTCTTCC 59.573 50.000 0.00 0.00 40.67 3.46
730 883 1.021202 CAGCACACTTCGTTCCCAAA 58.979 50.000 0.00 0.00 0.00 3.28
746 899 1.401018 CCAAAAATCACGGTTCGAGCC 60.401 52.381 8.48 8.48 0.00 4.70
753 906 2.404995 ACGGTTCGAGCCCTCTACG 61.405 63.158 13.19 2.27 0.00 3.51
779 932 1.153309 GTACATACCCCACACGGCC 60.153 63.158 0.00 0.00 0.00 6.13
935 1089 6.202762 CCTTTTCTTTCTTTCCAAAAATCCCG 59.797 38.462 0.00 0.00 0.00 5.14
957 1111 1.632920 CCTTCCTGCCTCTTTTCTCCT 59.367 52.381 0.00 0.00 0.00 3.69
958 1112 2.840651 CCTTCCTGCCTCTTTTCTCCTA 59.159 50.000 0.00 0.00 0.00 2.94
959 1113 3.118445 CCTTCCTGCCTCTTTTCTCCTAG 60.118 52.174 0.00 0.00 0.00 3.02
960 1114 3.474798 TCCTGCCTCTTTTCTCCTAGA 57.525 47.619 0.00 0.00 0.00 2.43
1018 1182 2.971598 ATGGAGTGGGACAAGGCCG 61.972 63.158 0.00 0.00 44.16 6.13
1229 1864 2.500369 CACGCACATGCTTGACGC 60.500 61.111 6.60 7.53 42.11 5.19
1262 1900 5.351740 ACTCTTTCTCTGCGTAAATAAAGCC 59.648 40.000 0.00 0.00 0.00 4.35
1277 1915 7.689446 AAATAAAGCCAGTAAAAGTCTCTCC 57.311 36.000 0.00 0.00 0.00 3.71
1281 1919 2.093394 GCCAGTAAAAGTCTCTCCCTCC 60.093 54.545 0.00 0.00 0.00 4.30
1284 1922 2.387510 AGTAAAAGTCTCTCCCTCCCCT 59.612 50.000 0.00 0.00 0.00 4.79
1297 1935 2.556766 CCTCCCCTTCTCTTTCTCCTT 58.443 52.381 0.00 0.00 0.00 3.36
1300 1938 4.566697 CCTCCCCTTCTCTTTCTCCTTTTC 60.567 50.000 0.00 0.00 0.00 2.29
1302 1940 4.665483 TCCCCTTCTCTTTCTCCTTTTCTT 59.335 41.667 0.00 0.00 0.00 2.52
1303 1941 5.134509 TCCCCTTCTCTTTCTCCTTTTCTTT 59.865 40.000 0.00 0.00 0.00 2.52
1304 1942 5.475220 CCCCTTCTCTTTCTCCTTTTCTTTC 59.525 44.000 0.00 0.00 0.00 2.62
1307 1945 7.286546 CCCTTCTCTTTCTCCTTTTCTTTCTTT 59.713 37.037 0.00 0.00 0.00 2.52
1382 2020 4.611310 TTGTCGGATCTGTAGAAGTACG 57.389 45.455 0.42 0.00 30.95 3.67
1474 2123 4.584325 TGGTGAGAATGCTGCTTTTAGTTT 59.416 37.500 0.00 0.00 0.00 2.66
1602 2259 3.837213 TTTCACTTTGCTCATGCTAGC 57.163 42.857 8.10 8.10 43.08 3.42
1627 2347 4.398549 TGCTTATTTGTGTTGTCGCTAC 57.601 40.909 0.00 0.00 0.00 3.58
1631 2351 0.579630 TTTGTGTTGTCGCTACGCAG 59.420 50.000 7.43 0.00 37.33 5.18
1655 2375 6.815142 AGCATCCTTTGAGATTATTTTGTTGC 59.185 34.615 0.00 0.00 0.00 4.17
1747 2475 7.764331 TCATGGTGTGTCATTTTCTATCATTG 58.236 34.615 0.00 0.00 0.00 2.82
1814 2542 5.608449 TCATCACTCCTGAAGATAGCAATG 58.392 41.667 0.00 0.00 0.00 2.82
1832 2560 4.023365 GCAATGGACATCCTCTTGATTAGC 60.023 45.833 14.34 3.76 33.86 3.09
1847 2579 8.094798 TCTTGATTAGCGTAACAAGACATTTT 57.905 30.769 12.63 0.00 42.05 1.82
1883 2615 1.607801 GGCCATTGAAAGCACTCCCC 61.608 60.000 0.00 0.00 0.00 4.81
1899 2631 6.850231 AGCACTCCCCTACTTACCTAAATTAT 59.150 38.462 0.00 0.00 0.00 1.28
1900 2632 8.014859 AGCACTCCCCTACTTACCTAAATTATA 58.985 37.037 0.00 0.00 0.00 0.98
1966 2701 4.598062 AGCAAAAGCTCAACTACGAAAAC 58.402 39.130 0.00 0.00 0.00 2.43
2066 2815 2.038814 GAGGGCAGGGCTCTTAGCTC 62.039 65.000 0.00 0.00 40.72 4.09
2103 2852 5.487433 ACAACTACAGCACTGCATTGTATA 58.513 37.500 5.89 0.00 33.96 1.47
2105 2854 6.599244 ACAACTACAGCACTGCATTGTATATT 59.401 34.615 5.89 0.31 33.96 1.28
2107 2856 7.630242 ACTACAGCACTGCATTGTATATTTT 57.370 32.000 5.89 0.00 0.00 1.82
2108 2857 8.731275 ACTACAGCACTGCATTGTATATTTTA 57.269 30.769 5.89 0.00 0.00 1.52
2109 2858 9.342308 ACTACAGCACTGCATTGTATATTTTAT 57.658 29.630 5.89 0.00 0.00 1.40
2112 2861 9.874205 ACAGCACTGCATTGTATATTTTATTTT 57.126 25.926 5.89 0.00 0.00 1.82
2217 2966 1.384525 TTTACCGCACAGCTTGTTGT 58.615 45.000 0.00 0.00 0.00 3.32
2234 2983 3.137544 TGTTGTGAAACCATACTCCCTGT 59.862 43.478 0.00 0.00 34.36 4.00
2257 3006 5.859205 ATTTGTTATTTCCATGCTCCCTC 57.141 39.130 0.00 0.00 0.00 4.30
2357 3112 3.958860 AGGCTGGGCTCACACCAC 61.959 66.667 3.75 0.00 33.63 4.16
2421 3177 2.625790 TGGCCTTGTTGTTTATGTCACC 59.374 45.455 3.32 0.00 0.00 4.02
2494 3558 9.365311 CGTTAAAGTTTTATTAGTGACACTGTG 57.635 33.333 18.58 6.19 0.00 3.66
2551 3615 9.253275 CTTAAACGCTGCAAAATAAATGAAATG 57.747 29.630 0.00 0.00 0.00 2.32
2626 3716 1.604604 CTCCACCATTTGTGTTCCGT 58.395 50.000 0.00 0.00 43.85 4.69
2841 3942 9.438228 ACTAACTAGATTCCTTCAAAACTTAGC 57.562 33.333 0.00 0.00 0.00 3.09
2842 3943 9.436957 CTAACTAGATTCCTTCAAAACTTAGCA 57.563 33.333 0.00 0.00 0.00 3.49
2843 3944 8.870075 AACTAGATTCCTTCAAAACTTAGCAT 57.130 30.769 0.00 0.00 0.00 3.79
2844 3945 8.273780 ACTAGATTCCTTCAAAACTTAGCATG 57.726 34.615 0.00 0.00 0.00 4.06
2845 3946 7.885399 ACTAGATTCCTTCAAAACTTAGCATGT 59.115 33.333 0.00 0.00 0.00 3.21
3066 4178 6.261826 ACATTCTCAGTTTTTCTCTTGGTCTG 59.738 38.462 0.00 0.00 0.00 3.51
3083 4227 4.344102 TGGTCTGTTCTACTGTAGCAGTTT 59.656 41.667 16.77 0.00 42.59 2.66
3084 4228 5.163343 TGGTCTGTTCTACTGTAGCAGTTTT 60.163 40.000 16.77 0.00 42.59 2.43
3108 4254 0.395036 TTGGGTGTGTGGTCAAGTGG 60.395 55.000 0.00 0.00 0.00 4.00
3296 4444 6.830324 AGCAAAAGATAAAGGATATCACAGCA 59.170 34.615 4.83 0.00 0.00 4.41
3437 4591 1.709578 CCGAGGGAGATGAGGATTCA 58.290 55.000 0.00 0.00 37.81 2.57
3470 4624 0.820074 AGCCTAGATCAGACGGGTCG 60.820 60.000 0.00 0.00 34.09 4.79
3598 4755 0.040058 TCCAGCAATGACAATGGCCT 59.960 50.000 3.32 0.00 32.51 5.19
3694 8561 5.300752 ACACCATTTCTTCAGTAGACAGTG 58.699 41.667 0.00 0.00 30.90 3.66
3698 8565 7.604164 CACCATTTCTTCAGTAGACAGTGTAAT 59.396 37.037 0.00 0.00 30.90 1.89
3717 8584 6.761714 GTGTAATACACCATTTCTCCAGTAGG 59.238 42.308 12.26 0.00 43.05 3.18
3738 8605 6.759497 AGGCAGTATAAAACACCATTTCTC 57.241 37.500 0.00 0.00 0.00 2.87
3753 8620 7.565398 ACACCATTTCTCCAGTAGACAGTATAT 59.435 37.037 0.00 0.00 32.51 0.86
3754 8621 9.078990 CACCATTTCTCCAGTAGACAGTATATA 57.921 37.037 0.00 0.00 32.51 0.86
3764 8631 9.261180 CCAGTAGACAGTATATAAAACACCATG 57.739 37.037 0.00 0.00 0.00 3.66
3772 8639 9.383519 CAGTATATAAAACACCATGTCTTCAGT 57.616 33.333 0.00 0.00 0.00 3.41
3821 8688 7.935755 CCTACTGAATCTGATATGATGTTGGTT 59.064 37.037 0.00 0.00 0.00 3.67
3822 8689 7.563888 ACTGAATCTGATATGATGTTGGTTG 57.436 36.000 0.00 0.00 0.00 3.77
3823 8690 6.544931 ACTGAATCTGATATGATGTTGGTTGG 59.455 38.462 0.00 0.00 0.00 3.77
3908 8778 1.363443 CACGGCATGTTGTTTGGCT 59.637 52.632 0.00 0.00 37.50 4.75
3932 8802 1.283321 AGGAATTGGGGTCTGAGAAGC 59.717 52.381 0.00 0.00 0.00 3.86
3935 8805 3.425659 GAATTGGGGTCTGAGAAGCTTT 58.574 45.455 0.00 0.00 0.00 3.51
3970 8841 2.463553 CAGCATGCGTTGGTTATCAG 57.536 50.000 13.01 0.00 32.51 2.90
3983 8854 2.232941 GGTTATCAGGGTCTTGTCGACA 59.767 50.000 15.76 15.76 44.68 4.35
4082 8956 6.509523 ACAGTATTTGCCCTTAGCCTATAA 57.490 37.500 0.00 0.00 42.71 0.98
4118 8995 1.555075 TGGTATGCAGACTCTGGGTTC 59.445 52.381 11.87 0.00 31.21 3.62
4198 9077 7.611770 ACAGTGTAAATGTAACTATCAGAGCA 58.388 34.615 0.00 0.00 47.00 4.26
4200 9079 8.598924 CAGTGTAAATGTAACTATCAGAGCAAG 58.401 37.037 0.00 0.00 0.00 4.01
4203 9082 3.165058 TGTAACTATCAGAGCAAGCGG 57.835 47.619 0.00 0.00 0.00 5.52
4210 9089 2.472695 TCAGAGCAAGCGGTTATGTT 57.527 45.000 0.00 0.00 0.00 2.71
4211 9090 2.346803 TCAGAGCAAGCGGTTATGTTC 58.653 47.619 0.00 0.00 0.00 3.18
4274 9221 3.500448 TCATTTGCACTCCCAACAGTA 57.500 42.857 0.00 0.00 0.00 2.74
4284 9231 4.935808 CACTCCCAACAGTATCTACCAAAC 59.064 45.833 0.00 0.00 0.00 2.93
4293 9240 4.223032 CAGTATCTACCAAACACACCTCCT 59.777 45.833 0.00 0.00 0.00 3.69
4296 9243 7.287005 CAGTATCTACCAAACACACCTCCTATA 59.713 40.741 0.00 0.00 0.00 1.31
4308 9255 6.672657 ACACACCTCCTATAATAGTCAAACCT 59.327 38.462 0.00 0.00 0.00 3.50
4330 9281 5.172460 TGTGATCTTCAAACACACACATG 57.828 39.130 0.00 0.00 39.17 3.21
4375 9330 4.537135 TGTACAGAAGAAGAAATCGCCT 57.463 40.909 0.00 0.00 0.00 5.52
4410 9365 1.815613 TCCACACCCATTTACAATGCG 59.184 47.619 0.00 0.00 0.00 4.73
4426 9381 3.913573 CGAAGAACATCGGCGCGG 61.914 66.667 8.83 8.94 39.12 6.46
4482 9437 2.190578 GCCGCTGTCCATAAGGCT 59.809 61.111 0.00 0.00 44.06 4.58
4705 9660 3.060615 CAGCACTTCAGGGCCAGC 61.061 66.667 6.18 0.00 0.00 4.85
4714 9669 2.366167 AGGGCCAGCGAGAGGAAT 60.366 61.111 6.18 0.00 0.00 3.01
4715 9670 2.110006 GGGCCAGCGAGAGGAATC 59.890 66.667 4.39 0.00 0.00 2.52
4716 9671 2.439104 GGGCCAGCGAGAGGAATCT 61.439 63.158 4.39 0.00 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.978099 ACAATGAATAGTATGCCCTCCAG 58.022 43.478 0.00 0.00 0.00 3.86
2 3 5.513094 GCTACAATGAATAGTATGCCCTCCA 60.513 44.000 0.00 0.00 0.00 3.86
4 5 5.551233 TGCTACAATGAATAGTATGCCCTC 58.449 41.667 0.00 0.00 0.00 4.30
5 6 5.072329 ACTGCTACAATGAATAGTATGCCCT 59.928 40.000 0.00 0.00 0.00 5.19
6 7 5.180117 CACTGCTACAATGAATAGTATGCCC 59.820 44.000 0.00 0.00 0.00 5.36
7 8 5.760253 ACACTGCTACAATGAATAGTATGCC 59.240 40.000 0.00 0.00 0.00 4.40
8 9 6.479990 TGACACTGCTACAATGAATAGTATGC 59.520 38.462 0.00 0.00 0.00 3.14
9 10 7.042456 GGTGACACTGCTACAATGAATAGTATG 60.042 40.741 5.39 0.00 0.00 2.39
10 11 6.986817 GGTGACACTGCTACAATGAATAGTAT 59.013 38.462 5.39 0.00 0.00 2.12
11 12 6.154534 AGGTGACACTGCTACAATGAATAGTA 59.845 38.462 5.39 0.00 0.00 1.82
12 13 5.046304 AGGTGACACTGCTACAATGAATAGT 60.046 40.000 5.39 0.00 0.00 2.12
13 14 5.423015 AGGTGACACTGCTACAATGAATAG 58.577 41.667 5.39 0.00 0.00 1.73
14 15 5.187772 AGAGGTGACACTGCTACAATGAATA 59.812 40.000 5.39 0.00 0.00 1.75
15 16 4.019860 AGAGGTGACACTGCTACAATGAAT 60.020 41.667 5.39 0.00 0.00 2.57
16 17 3.324846 AGAGGTGACACTGCTACAATGAA 59.675 43.478 5.39 0.00 0.00 2.57
17 18 2.899900 AGAGGTGACACTGCTACAATGA 59.100 45.455 5.39 0.00 0.00 2.57
18 19 3.325293 AGAGGTGACACTGCTACAATG 57.675 47.619 5.39 0.00 0.00 2.82
19 20 3.324846 TGAAGAGGTGACACTGCTACAAT 59.675 43.478 5.39 0.00 0.00 2.71
20 21 2.698274 TGAAGAGGTGACACTGCTACAA 59.302 45.455 5.39 0.00 0.00 2.41
21 22 2.316108 TGAAGAGGTGACACTGCTACA 58.684 47.619 5.39 0.00 0.00 2.74
22 23 3.516615 GATGAAGAGGTGACACTGCTAC 58.483 50.000 5.39 0.00 0.00 3.58
23 24 2.497675 GGATGAAGAGGTGACACTGCTA 59.502 50.000 5.39 0.00 0.00 3.49
24 25 1.277557 GGATGAAGAGGTGACACTGCT 59.722 52.381 5.39 0.28 0.00 4.24
25 26 1.731720 GGATGAAGAGGTGACACTGC 58.268 55.000 5.39 0.00 0.00 4.40
26 27 1.546029 TCGGATGAAGAGGTGACACTG 59.454 52.381 5.39 0.00 0.00 3.66
27 28 1.546476 GTCGGATGAAGAGGTGACACT 59.454 52.381 5.39 0.00 0.00 3.55
28 29 1.732732 CGTCGGATGAAGAGGTGACAC 60.733 57.143 0.00 0.00 0.00 3.67
29 30 0.526211 CGTCGGATGAAGAGGTGACA 59.474 55.000 0.00 0.00 0.00 3.58
30 31 0.179134 CCGTCGGATGAAGAGGTGAC 60.179 60.000 4.91 0.00 0.00 3.67
31 32 1.945354 GCCGTCGGATGAAGAGGTGA 61.945 60.000 17.49 0.00 0.00 4.02
32 33 1.519455 GCCGTCGGATGAAGAGGTG 60.519 63.158 17.49 0.00 0.00 4.00
33 34 0.395311 TAGCCGTCGGATGAAGAGGT 60.395 55.000 17.49 0.00 0.00 3.85
34 35 0.030908 GTAGCCGTCGGATGAAGAGG 59.969 60.000 17.49 0.00 0.00 3.69
35 36 0.317103 CGTAGCCGTCGGATGAAGAG 60.317 60.000 17.49 0.00 0.00 2.85
36 37 1.725665 CGTAGCCGTCGGATGAAGA 59.274 57.895 17.49 0.00 0.00 2.87
37 38 4.303853 CGTAGCCGTCGGATGAAG 57.696 61.111 17.49 0.44 0.00 3.02
55 56 3.581687 GATCTCGCCCTCGGATGGC 62.582 68.421 13.62 13.62 45.70 4.40
56 57 2.653702 GATCTCGCCCTCGGATGG 59.346 66.667 0.00 0.00 36.13 3.51
57 58 2.653702 GGATCTCGCCCTCGGATG 59.346 66.667 0.00 0.00 36.13 3.51
58 59 2.986413 CGGATCTCGCCCTCGGAT 60.986 66.667 0.00 0.00 36.13 4.18
59 60 4.185286 TCGGATCTCGCCCTCGGA 62.185 66.667 0.00 0.00 39.05 4.55
60 61 3.967335 GTCGGATCTCGCCCTCGG 61.967 72.222 0.00 0.00 39.05 4.63
61 62 4.315122 CGTCGGATCTCGCCCTCG 62.315 72.222 0.00 0.00 39.05 4.63
62 63 3.967335 CCGTCGGATCTCGCCCTC 61.967 72.222 4.91 0.00 39.05 4.30
67 68 4.315122 CTCGGCCGTCGGATCTCG 62.315 72.222 27.15 12.44 39.77 4.04
68 69 2.001361 TTTCTCGGCCGTCGGATCTC 62.001 60.000 27.15 0.00 39.77 2.75
69 70 1.601419 TTTTCTCGGCCGTCGGATCT 61.601 55.000 27.15 0.00 39.77 2.75
70 71 1.153706 TTTTCTCGGCCGTCGGATC 60.154 57.895 27.15 5.15 39.77 3.36
71 72 1.447314 GTTTTCTCGGCCGTCGGAT 60.447 57.895 27.15 0.00 39.77 4.18
72 73 2.048877 GTTTTCTCGGCCGTCGGA 60.049 61.111 27.15 18.49 39.77 4.55
73 74 1.693083 GATGTTTTCTCGGCCGTCGG 61.693 60.000 27.15 16.42 39.77 4.79
74 75 1.011968 TGATGTTTTCTCGGCCGTCG 61.012 55.000 27.15 17.65 40.90 5.12
75 76 1.128692 CTTGATGTTTTCTCGGCCGTC 59.871 52.381 27.15 13.26 0.00 4.79
76 77 1.156736 CTTGATGTTTTCTCGGCCGT 58.843 50.000 27.15 1.71 0.00 5.68
77 78 1.156736 ACTTGATGTTTTCTCGGCCG 58.843 50.000 22.12 22.12 0.00 6.13
78 79 4.473199 GTTTACTTGATGTTTTCTCGGCC 58.527 43.478 0.00 0.00 0.00 6.13
79 80 4.084223 TCGTTTACTTGATGTTTTCTCGGC 60.084 41.667 0.00 0.00 0.00 5.54
80 81 5.585500 TCGTTTACTTGATGTTTTCTCGG 57.415 39.130 0.00 0.00 0.00 4.63
81 82 6.241385 GGATCGTTTACTTGATGTTTTCTCG 58.759 40.000 0.00 0.00 0.00 4.04
82 83 6.090358 TCGGATCGTTTACTTGATGTTTTCTC 59.910 38.462 0.00 0.00 0.00 2.87
83 84 5.929992 TCGGATCGTTTACTTGATGTTTTCT 59.070 36.000 0.00 0.00 0.00 2.52
84 85 6.013689 GTCGGATCGTTTACTTGATGTTTTC 58.986 40.000 0.00 0.00 0.00 2.29
85 86 5.389098 CGTCGGATCGTTTACTTGATGTTTT 60.389 40.000 0.00 0.00 0.00 2.43
86 87 4.090930 CGTCGGATCGTTTACTTGATGTTT 59.909 41.667 0.00 0.00 0.00 2.83
87 88 3.611113 CGTCGGATCGTTTACTTGATGTT 59.389 43.478 0.00 0.00 0.00 2.71
88 89 3.176708 CGTCGGATCGTTTACTTGATGT 58.823 45.455 0.00 0.00 0.00 3.06
89 90 2.534349 CCGTCGGATCGTTTACTTGATG 59.466 50.000 4.91 0.00 0.00 3.07
90 91 2.805845 CCGTCGGATCGTTTACTTGAT 58.194 47.619 4.91 0.00 0.00 2.57
91 92 1.733389 GCCGTCGGATCGTTTACTTGA 60.733 52.381 17.49 0.00 0.00 3.02
92 93 0.643820 GCCGTCGGATCGTTTACTTG 59.356 55.000 17.49 0.00 0.00 3.16
93 94 0.459063 GGCCGTCGGATCGTTTACTT 60.459 55.000 17.49 0.00 0.00 2.24
94 95 1.140375 GGCCGTCGGATCGTTTACT 59.860 57.895 17.49 0.00 0.00 2.24
95 96 2.226225 CGGCCGTCGGATCGTTTAC 61.226 63.158 19.50 0.00 34.75 2.01
96 97 1.932011 TTCGGCCGTCGGATCGTTTA 61.932 55.000 27.15 0.00 39.77 2.01
97 98 2.768503 TTTCGGCCGTCGGATCGTTT 62.769 55.000 27.15 0.00 39.77 3.60
98 99 3.285523 TTTCGGCCGTCGGATCGTT 62.286 57.895 27.15 0.00 39.77 3.85
99 100 3.695022 CTTTCGGCCGTCGGATCGT 62.695 63.158 27.15 0.00 39.77 3.73
100 101 2.954868 CTTTCGGCCGTCGGATCG 60.955 66.667 27.15 17.56 39.77 3.69
101 102 1.877165 GACTTTCGGCCGTCGGATC 60.877 63.158 27.15 13.72 39.77 3.36
102 103 2.183555 GACTTTCGGCCGTCGGAT 59.816 61.111 27.15 8.29 39.77 4.18
103 104 4.409218 CGACTTTCGGCCGTCGGA 62.409 66.667 27.15 1.49 46.61 4.55
106 107 1.010419 TTTAGCGACTTTCGGCCGTC 61.010 55.000 27.15 14.54 40.84 4.79
107 108 1.005867 TTTAGCGACTTTCGGCCGT 60.006 52.632 27.15 5.04 40.84 5.68
108 109 1.012486 AGTTTAGCGACTTTCGGCCG 61.012 55.000 22.12 22.12 40.84 6.13
109 110 0.720027 GAGTTTAGCGACTTTCGGCC 59.280 55.000 0.00 0.00 40.84 6.13
110 111 1.390463 CAGAGTTTAGCGACTTTCGGC 59.610 52.381 0.00 0.00 40.84 5.54
111 112 2.917971 CTCAGAGTTTAGCGACTTTCGG 59.082 50.000 0.00 0.00 40.84 4.30
112 113 3.822996 TCTCAGAGTTTAGCGACTTTCG 58.177 45.455 0.00 0.00 43.89 3.46
113 114 4.088781 CGTTCTCAGAGTTTAGCGACTTTC 59.911 45.833 0.00 0.00 0.00 2.62
114 115 3.982058 CGTTCTCAGAGTTTAGCGACTTT 59.018 43.478 0.00 0.00 0.00 2.66
115 116 3.004524 ACGTTCTCAGAGTTTAGCGACTT 59.995 43.478 0.00 0.00 0.00 3.01
116 117 2.553172 ACGTTCTCAGAGTTTAGCGACT 59.447 45.455 0.00 0.00 0.00 4.18
117 118 2.909863 GACGTTCTCAGAGTTTAGCGAC 59.090 50.000 0.00 0.00 0.00 5.19
118 119 2.095364 GGACGTTCTCAGAGTTTAGCGA 60.095 50.000 0.00 0.00 0.00 4.93
119 120 2.251893 GGACGTTCTCAGAGTTTAGCG 58.748 52.381 0.00 0.00 0.00 4.26
120 121 3.299340 TGGACGTTCTCAGAGTTTAGC 57.701 47.619 0.00 0.00 0.00 3.09
121 122 4.810790 ACATGGACGTTCTCAGAGTTTAG 58.189 43.478 0.00 0.00 0.00 1.85
122 123 4.866508 ACATGGACGTTCTCAGAGTTTA 57.133 40.909 0.00 0.00 0.00 2.01
123 124 3.753294 ACATGGACGTTCTCAGAGTTT 57.247 42.857 0.00 0.00 0.00 2.66
124 125 3.654414 GAACATGGACGTTCTCAGAGTT 58.346 45.455 0.00 2.28 41.70 3.01
125 126 3.305398 GAACATGGACGTTCTCAGAGT 57.695 47.619 0.00 0.00 41.70 3.24
132 133 2.758979 TCTAGGGAGAACATGGACGTTC 59.241 50.000 0.00 0.00 44.63 3.95
133 134 2.816411 TCTAGGGAGAACATGGACGTT 58.184 47.619 0.00 0.00 0.00 3.99
134 135 2.526888 TCTAGGGAGAACATGGACGT 57.473 50.000 0.00 0.00 0.00 4.34
135 136 5.730296 AATATCTAGGGAGAACATGGACG 57.270 43.478 0.00 0.00 34.61 4.79
144 145 9.889388 CCATCCTGATATAAATATCTAGGGAGA 57.111 37.037 18.37 8.33 39.82 3.71
145 146 9.667607 ACCATCCTGATATAAATATCTAGGGAG 57.332 37.037 18.37 13.99 39.82 4.30
155 156 9.745018 CAAATGAGGTACCATCCTGATATAAAT 57.255 33.333 15.94 0.00 38.02 1.40
156 157 8.944138 TCAAATGAGGTACCATCCTGATATAAA 58.056 33.333 15.94 0.00 38.02 1.40
157 158 8.504811 TCAAATGAGGTACCATCCTGATATAA 57.495 34.615 15.94 0.00 38.02 0.98
158 159 8.504811 TTCAAATGAGGTACCATCCTGATATA 57.495 34.615 15.94 0.00 38.02 0.86
159 160 7.392766 TTCAAATGAGGTACCATCCTGATAT 57.607 36.000 15.94 0.00 38.02 1.63
160 161 6.823286 TTCAAATGAGGTACCATCCTGATA 57.177 37.500 15.94 0.00 38.02 2.15
161 162 5.715439 TTCAAATGAGGTACCATCCTGAT 57.285 39.130 15.94 0.00 38.02 2.90
162 163 5.512942 TTTCAAATGAGGTACCATCCTGA 57.487 39.130 15.94 7.12 38.02 3.86
163 164 7.056635 ACTATTTCAAATGAGGTACCATCCTG 58.943 38.462 15.94 4.74 38.02 3.86
164 165 7.213178 ACTATTTCAAATGAGGTACCATCCT 57.787 36.000 15.94 0.00 40.97 3.24
165 166 8.429641 TCTACTATTTCAAATGAGGTACCATCC 58.570 37.037 15.94 3.26 0.00 3.51
166 167 9.832445 TTCTACTATTTCAAATGAGGTACCATC 57.168 33.333 15.94 9.39 0.00 3.51
168 169 9.444600 GTTTCTACTATTTCAAATGAGGTACCA 57.555 33.333 15.94 0.00 0.00 3.25
169 170 8.890718 GGTTTCTACTATTTCAAATGAGGTACC 58.109 37.037 2.73 2.73 0.00 3.34
170 171 8.601476 CGGTTTCTACTATTTCAAATGAGGTAC 58.399 37.037 0.00 0.00 0.00 3.34
171 172 8.316214 ACGGTTTCTACTATTTCAAATGAGGTA 58.684 33.333 0.00 0.00 0.00 3.08
186 187 4.021280 GGGAGAGAAAAGACGGTTTCTACT 60.021 45.833 9.99 9.21 45.67 2.57
187 188 4.244066 GGGAGAGAAAAGACGGTTTCTAC 58.756 47.826 9.99 8.06 45.67 2.59
218 219 4.032960 TGGTCAAGGCAAGATGTATTGT 57.967 40.909 0.00 0.00 32.56 2.71
219 220 4.676196 GCTTGGTCAAGGCAAGATGTATTG 60.676 45.833 12.02 0.00 38.80 1.90
220 221 3.445096 GCTTGGTCAAGGCAAGATGTATT 59.555 43.478 12.02 0.00 38.80 1.89
221 222 3.019564 GCTTGGTCAAGGCAAGATGTAT 58.980 45.455 12.02 0.00 38.80 2.29
222 223 2.224744 TGCTTGGTCAAGGCAAGATGTA 60.225 45.455 12.02 0.00 38.80 2.29
223 224 1.251251 GCTTGGTCAAGGCAAGATGT 58.749 50.000 12.02 0.00 38.80 3.06
224 225 1.250328 TGCTTGGTCAAGGCAAGATG 58.750 50.000 12.02 0.00 38.80 2.90
225 226 1.891150 CTTGCTTGGTCAAGGCAAGAT 59.109 47.619 25.56 0.00 45.02 2.40
240 241 0.179009 TTGCTCTGCCTGTTCTTGCT 60.179 50.000 0.00 0.00 0.00 3.91
249 250 3.077484 TCAGCTTAATTTGCTCTGCCT 57.923 42.857 3.12 0.00 38.92 4.75
279 280 5.293814 GGCCGAGAGATTTTTAACTTCTACC 59.706 44.000 0.00 0.00 0.00 3.18
286 287 2.475685 GCACGGCCGAGAGATTTTTAAC 60.476 50.000 35.90 2.57 0.00 2.01
345 360 3.386237 AGCACTCACTCGCCTCCC 61.386 66.667 0.00 0.00 0.00 4.30
368 383 1.835927 GAAGGAGTGGTGCTGGCTCT 61.836 60.000 0.00 0.00 0.00 4.09
376 391 1.545651 GGGAAGTTGGAAGGAGTGGTG 60.546 57.143 0.00 0.00 0.00 4.17
377 392 0.771755 GGGAAGTTGGAAGGAGTGGT 59.228 55.000 0.00 0.00 0.00 4.16
383 398 2.656947 TTGTCTGGGAAGTTGGAAGG 57.343 50.000 0.00 0.00 0.00 3.46
385 400 5.010617 GCTATTTTTGTCTGGGAAGTTGGAA 59.989 40.000 0.00 0.00 0.00 3.53
391 406 4.082026 CCTTGGCTATTTTTGTCTGGGAAG 60.082 45.833 0.00 0.00 0.00 3.46
392 407 3.831911 CCTTGGCTATTTTTGTCTGGGAA 59.168 43.478 0.00 0.00 0.00 3.97
393 408 3.075283 TCCTTGGCTATTTTTGTCTGGGA 59.925 43.478 0.00 0.00 0.00 4.37
394 409 3.430453 TCCTTGGCTATTTTTGTCTGGG 58.570 45.455 0.00 0.00 0.00 4.45
395 410 4.335416 TCTCCTTGGCTATTTTTGTCTGG 58.665 43.478 0.00 0.00 0.00 3.86
396 411 5.248640 TCTCTCCTTGGCTATTTTTGTCTG 58.751 41.667 0.00 0.00 0.00 3.51
397 412 5.249393 TCTCTCTCCTTGGCTATTTTTGTCT 59.751 40.000 0.00 0.00 0.00 3.41
398 413 5.491982 TCTCTCTCCTTGGCTATTTTTGTC 58.508 41.667 0.00 0.00 0.00 3.18
399 414 5.249393 TCTCTCTCTCCTTGGCTATTTTTGT 59.751 40.000 0.00 0.00 0.00 2.83
400 415 5.738909 TCTCTCTCTCCTTGGCTATTTTTG 58.261 41.667 0.00 0.00 0.00 2.44
401 416 6.380079 TTCTCTCTCTCCTTGGCTATTTTT 57.620 37.500 0.00 0.00 0.00 1.94
412 427 5.032846 TCTCTCTCTCTTTCTCTCTCTCCT 58.967 45.833 0.00 0.00 0.00 3.69
424 439 3.523564 AGTACTCTGGCTCTCTCTCTCTT 59.476 47.826 0.00 0.00 0.00 2.85
440 461 1.900486 ACCAAGCAGGGTGTAGTACTC 59.100 52.381 0.00 0.00 43.89 2.59
441 462 2.025636 ACCAAGCAGGGTGTAGTACT 57.974 50.000 0.00 0.00 43.89 2.73
442 463 2.853235 AACCAAGCAGGGTGTAGTAC 57.147 50.000 0.00 0.00 41.32 2.73
443 464 2.976882 AGAAACCAAGCAGGGTGTAGTA 59.023 45.455 0.00 0.00 41.32 1.82
444 465 1.774856 AGAAACCAAGCAGGGTGTAGT 59.225 47.619 0.00 0.00 41.32 2.73
445 466 2.039084 AGAGAAACCAAGCAGGGTGTAG 59.961 50.000 0.00 0.00 41.32 2.74
446 467 2.054799 AGAGAAACCAAGCAGGGTGTA 58.945 47.619 0.00 0.00 41.32 2.90
448 469 1.242076 CAGAGAAACCAAGCAGGGTG 58.758 55.000 0.00 0.00 41.32 4.61
449 470 0.846693 ACAGAGAAACCAAGCAGGGT 59.153 50.000 0.04 0.00 45.04 4.34
456 483 3.297134 AAAGCTGGACAGAGAAACCAA 57.703 42.857 3.00 0.00 33.14 3.67
507 534 1.068954 CAGAAGAAAAAGCCGACAGCC 60.069 52.381 0.00 0.00 45.47 4.85
564 594 4.717280 GGAATGGAGAAGGAAGAAGAGGTA 59.283 45.833 0.00 0.00 0.00 3.08
576 606 0.539051 AGTGCGAGGGAATGGAGAAG 59.461 55.000 0.00 0.00 0.00 2.85
683 836 3.833553 AACCTTTGGGCAGGGCAGG 62.834 63.158 0.00 0.00 38.42 4.85
685 838 2.203625 GAACCTTTGGGCAGGGCA 60.204 61.111 0.00 0.00 38.42 5.36
686 839 2.203625 TGAACCTTTGGGCAGGGC 60.204 61.111 0.00 0.00 38.42 5.19
687 840 1.908299 GGTGAACCTTTGGGCAGGG 60.908 63.158 0.00 0.00 38.42 4.45
688 841 1.153756 AGGTGAACCTTTGGGCAGG 59.846 57.895 0.00 0.00 46.09 4.85
689 842 4.929807 AGGTGAACCTTTGGGCAG 57.070 55.556 0.00 0.00 46.09 4.85
730 883 0.391263 GAGGGCTCGAACCGTGATTT 60.391 55.000 4.50 0.00 0.00 2.17
773 926 2.032071 AGTTTTCCTCCGGCCGTG 59.968 61.111 26.12 15.93 0.00 4.94
779 932 0.881796 GCCTTTCCAGTTTTCCTCCG 59.118 55.000 0.00 0.00 0.00 4.63
866 1020 1.153349 GAAGGAAATCCGCTCGGCT 60.153 57.895 2.96 0.00 42.08 5.52
935 1089 2.616765 GGAGAAAAGAGGCAGGAAGGAC 60.617 54.545 0.00 0.00 0.00 3.85
957 1111 1.079256 ACAGGCTGGCTCTGGTCTA 59.921 57.895 20.34 0.00 36.62 2.59
958 1112 2.203907 ACAGGCTGGCTCTGGTCT 60.204 61.111 20.34 0.00 36.62 3.85
959 1113 2.046507 CACAGGCTGGCTCTGGTC 60.047 66.667 20.34 0.00 36.62 4.02
960 1114 2.851102 ACACAGGCTGGCTCTGGT 60.851 61.111 20.34 4.06 36.62 4.00
1229 1864 2.098443 GCAGAGAAAGAGTAGACGGAGG 59.902 54.545 0.00 0.00 0.00 4.30
1262 1900 2.502130 GGGGAGGGAGAGACTTTTACTG 59.498 54.545 0.00 0.00 0.00 2.74
1277 1915 2.262266 AGGAGAAAGAGAAGGGGAGG 57.738 55.000 0.00 0.00 0.00 4.30
1281 1919 6.303054 AGAAAGAAAAGGAGAAAGAGAAGGG 58.697 40.000 0.00 0.00 0.00 3.95
1382 2020 5.376625 TCCATCAGCCCATAACAAAGTATC 58.623 41.667 0.00 0.00 0.00 2.24
1474 2123 3.318557 TGCTCATGCATGAAGTGACAAAA 59.681 39.130 28.39 4.14 45.31 2.44
1602 2259 3.848019 GCGACAACACAAATAAGCATCTG 59.152 43.478 0.00 0.00 0.00 2.90
1605 2262 4.435518 CGTAGCGACAACACAAATAAGCAT 60.436 41.667 0.00 0.00 0.00 3.79
1627 2347 4.825546 AATAATCTCAAAGGATGCTGCG 57.174 40.909 0.00 0.00 0.00 5.18
1631 2351 6.815142 AGCAACAAAATAATCTCAAAGGATGC 59.185 34.615 0.00 0.00 0.00 3.91
1747 2475 6.542370 ACACATTAACAGTACCCTGCATAATC 59.458 38.462 0.00 0.00 42.81 1.75
1814 2542 3.460857 ACGCTAATCAAGAGGATGTCC 57.539 47.619 0.00 0.00 36.02 4.02
1832 2560 8.495949 ACACAATCTCTAAAATGTCTTGTTACG 58.504 33.333 0.00 0.00 0.00 3.18
1847 2579 7.801104 TCAATGGCCTAATAACACAATCTCTA 58.199 34.615 3.32 0.00 0.00 2.43
1899 2631 4.393834 TGGAGTGTTGCTTGCAAGTTATA 58.606 39.130 26.55 11.14 0.00 0.98
1900 2632 3.221771 TGGAGTGTTGCTTGCAAGTTAT 58.778 40.909 26.55 8.18 0.00 1.89
1986 2721 6.986231 GCCCTTTTCATTCTTCTTTCTTTCAA 59.014 34.615 0.00 0.00 0.00 2.69
1989 2724 6.484364 TGCCCTTTTCATTCTTCTTTCTTT 57.516 33.333 0.00 0.00 0.00 2.52
2066 2815 2.586648 AGTTGTAAGAGGGGCAAAGG 57.413 50.000 0.00 0.00 0.00 3.11
2217 2966 6.134535 ACAAATACAGGGAGTATGGTTTCA 57.865 37.500 0.00 0.00 42.56 2.69
2234 2983 6.547141 CAGAGGGAGCATGGAAATAACAAATA 59.453 38.462 0.00 0.00 0.00 1.40
2357 3112 6.038356 AGAGCAAATAAATTCTTCCAATGCG 58.962 36.000 0.00 0.00 36.45 4.73
2421 3177 8.177663 GTGATTGATCATACAGTTTTGTACAGG 58.822 37.037 0.00 0.00 42.29 4.00
2521 3585 2.392933 TTTTGCAGCGTTTAAGGTCG 57.607 45.000 0.00 0.00 0.00 4.79
2551 3615 2.489329 CACATGACAATCTTGTGTCCCC 59.511 50.000 13.81 0.00 46.13 4.81
2859 3966 3.627577 TCAAGAAGTTCACAGAAGTTGCC 59.372 43.478 5.50 0.00 0.00 4.52
2944 4051 5.473039 ACCATAAAAGCACAATCTTTCAGC 58.527 37.500 0.00 0.00 35.41 4.26
3006 4117 7.041372 TGAGCAAACTGTGTTTTAGGATTCTAC 60.041 37.037 0.00 0.00 0.00 2.59
3011 4122 5.133221 ACTGAGCAAACTGTGTTTTAGGAT 58.867 37.500 0.00 0.00 0.00 3.24
3091 4235 2.193536 GCCACTTGACCACACACCC 61.194 63.158 0.00 0.00 0.00 4.61
3092 4236 0.823356 ATGCCACTTGACCACACACC 60.823 55.000 0.00 0.00 0.00 4.16
3093 4237 1.032014 AATGCCACTTGACCACACAC 58.968 50.000 0.00 0.00 0.00 3.82
3095 4239 1.680735 TGAAATGCCACTTGACCACAC 59.319 47.619 0.00 0.00 0.00 3.82
3099 4243 6.375945 AAAAATTTGAAATGCCACTTGACC 57.624 33.333 0.00 0.00 0.00 4.02
3233 4381 3.831323 TCCTTGGTCAAAAATGCTCTCA 58.169 40.909 0.00 0.00 0.00 3.27
3437 4591 0.896940 TAGGCTTCTTGTCGGTCGGT 60.897 55.000 0.00 0.00 0.00 4.69
3542 4696 4.385405 ACCTGCTCACGCTCTGCC 62.385 66.667 0.00 0.00 36.97 4.85
3694 8561 5.758784 GCCTACTGGAGAAATGGTGTATTAC 59.241 44.000 0.00 0.00 34.57 1.89
3698 8565 3.178046 TGCCTACTGGAGAAATGGTGTA 58.822 45.455 0.00 0.00 34.57 2.90
3710 8577 4.839121 TGGTGTTTTATACTGCCTACTGG 58.161 43.478 0.00 0.00 0.00 4.00
3717 8584 6.151144 ACTGGAGAAATGGTGTTTTATACTGC 59.849 38.462 0.00 0.00 0.00 4.40
3738 8605 9.261180 CATGGTGTTTTATATACTGTCTACTGG 57.739 37.037 0.00 0.00 0.00 4.00
3772 8639 5.946972 GGCTTCCATAGAGCTATACTGTCTA 59.053 44.000 0.00 0.00 40.01 2.59
3894 8764 1.603678 CCTGTCAGCCAAACAACATGC 60.604 52.381 0.00 0.00 0.00 4.06
3895 8765 1.955778 TCCTGTCAGCCAAACAACATG 59.044 47.619 0.00 0.00 0.00 3.21
3908 8778 1.630369 CTCAGACCCCAATTCCTGTCA 59.370 52.381 0.00 0.00 0.00 3.58
3932 8802 6.072112 TGCTGCTTTTTACACTAAGGAAAG 57.928 37.500 0.00 0.00 0.00 2.62
3935 8805 4.082787 GCATGCTGCTTTTTACACTAAGGA 60.083 41.667 11.37 0.00 40.96 3.36
3983 8854 5.137412 AGCTAAACTACTCTCAGGAGGAT 57.863 43.478 0.00 0.00 43.46 3.24
4082 8956 7.230510 TCTGCATACCAACACTTGAAGTTAATT 59.769 33.333 0.00 0.00 0.00 1.40
4118 8995 3.250040 ACAGCTTACCTTGTAAAACTGCG 59.750 43.478 12.83 0.00 0.00 5.18
4196 9075 4.360101 GCGAACATAACCGCTTGC 57.640 55.556 0.00 0.00 46.96 4.01
4203 9082 1.095807 GGAGGCCTGGCGAACATAAC 61.096 60.000 12.00 0.00 0.00 1.89
4210 9089 2.478335 ATTTTTCGGAGGCCTGGCGA 62.478 55.000 12.00 0.69 0.00 5.54
4211 9090 1.993369 GATTTTTCGGAGGCCTGGCG 61.993 60.000 12.00 0.00 0.00 5.69
4274 9221 7.691993 ATTATAGGAGGTGTGTTTGGTAGAT 57.308 36.000 0.00 0.00 0.00 1.98
4284 9231 6.986817 CAGGTTTGACTATTATAGGAGGTGTG 59.013 42.308 4.15 0.00 0.00 3.82
4296 9243 7.502226 TGTTTGAAGATCACAGGTTTGACTATT 59.498 33.333 0.00 0.00 0.00 1.73
4308 9255 4.880696 TCATGTGTGTGTTTGAAGATCACA 59.119 37.500 0.00 0.00 39.31 3.58
4330 9281 4.202101 TGAATGGGTGTGTTGTTGTTGATC 60.202 41.667 0.00 0.00 0.00 2.92
4410 9365 4.223964 GCCGCGCCGATGTTCTTC 62.224 66.667 0.00 0.00 0.00 2.87
4428 9383 3.766691 TGACTCCCCGTTAGCGCC 61.767 66.667 2.29 0.00 36.67 6.53
4438 9393 3.083997 AGGATGGCGGTGACTCCC 61.084 66.667 0.00 0.00 0.00 4.30
4682 9637 2.360852 CCTGAAGTGCTGCCAGGG 60.361 66.667 13.04 0.00 42.75 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.