Multiple sequence alignment - TraesCS3D01G334100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G334100 chr3D 100.000 3233 0 0 1 3233 446063211 446066443 0.000000e+00 5971
1 TraesCS3D01G334100 chr3D 79.755 163 27 4 2444 2606 4321750 4321594 2.640000e-21 113
2 TraesCS3D01G334100 chr3A 92.636 2784 155 18 25 2800 587876499 587879240 0.000000e+00 3960
3 TraesCS3D01G334100 chr3A 88.434 415 46 2 2799 3211 63133981 63134395 1.730000e-137 499
4 TraesCS3D01G334100 chr3B 93.491 2412 107 22 3 2403 584910803 584913175 0.000000e+00 3539
5 TraesCS3D01G334100 chr3B 85.273 421 53 6 2799 3211 23417876 23417457 2.980000e-115 425
6 TraesCS3D01G334100 chr3B 90.102 293 18 5 2518 2800 584913171 584913462 1.420000e-98 370
7 TraesCS3D01G334100 chr5B 89.835 423 40 3 2799 3218 670489924 670489502 1.020000e-149 540
8 TraesCS3D01G334100 chr2D 88.112 429 43 5 2793 3213 626911530 626911102 1.340000e-138 503
9 TraesCS3D01G334100 chr2D 85.906 149 16 4 1743 1890 612344222 612344078 1.550000e-33 154
10 TraesCS3D01G334100 chr7A 86.916 428 48 5 2799 3219 677992518 677992944 1.050000e-129 473
11 TraesCS3D01G334100 chr7A 86.461 421 46 7 2799 3211 8595866 8596283 4.920000e-123 451
12 TraesCS3D01G334100 chr2A 86.967 422 48 4 2799 3213 15945914 15946335 4.880000e-128 468
13 TraesCS3D01G334100 chr2A 87.097 155 14 5 1743 1895 744449177 744449027 1.540000e-38 171
14 TraesCS3D01G334100 chr2B 86.698 421 48 4 2799 3211 111674553 111674133 8.170000e-126 460
15 TraesCS3D01G334100 chr2B 86.452 155 15 5 1743 1895 747180980 747180830 7.180000e-37 165
16 TraesCS3D01G334100 chr7B 86.223 421 49 6 2799 3211 366079416 366079835 6.360000e-122 448
17 TraesCS3D01G334100 chr7B 79.079 239 32 8 2444 2682 211399806 211399586 7.230000e-32 148


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G334100 chr3D 446063211 446066443 3232 False 5971.0 5971 100.0000 1 3233 1 chr3D.!!$F1 3232
1 TraesCS3D01G334100 chr3A 587876499 587879240 2741 False 3960.0 3960 92.6360 25 2800 1 chr3A.!!$F2 2775
2 TraesCS3D01G334100 chr3B 584910803 584913462 2659 False 1954.5 3539 91.7965 3 2800 2 chr3B.!!$F1 2797

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
990 1007 0.460987 GACATCTGAAGTCCGGCCAG 60.461 60.0 2.24 1.34 0.0 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2824 2862 0.030908 CGCTGGGAAGATCCGACTAC 59.969 60.0 0.0 0.0 37.43 2.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 7.824289 CAGAATCCTCACTAAGTAAATGAACCA 59.176 37.037 0.00 0.00 0.00 3.67
50 51 2.187958 CCACCCTCTTCACCTCATACA 58.812 52.381 0.00 0.00 0.00 2.29
52 53 2.834549 CACCCTCTTCACCTCATACACT 59.165 50.000 0.00 0.00 0.00 3.55
59 60 5.571285 TCTTCACCTCATACACTAGTGAGT 58.429 41.667 29.30 13.74 40.12 3.41
121 122 1.610038 CAGTTGATCTTTGCAGCACCA 59.390 47.619 0.00 0.00 0.00 4.17
159 160 1.140816 GCGACCTCTCTGTCAAACAC 58.859 55.000 0.00 0.00 34.88 3.32
222 223 2.963854 CGACCGGCTAGCAGCATG 60.964 66.667 18.24 2.43 44.75 4.06
243 244 3.864686 GCCACGTATGCAGCACCG 61.865 66.667 13.36 13.36 0.00 4.94
300 301 4.752879 GCTTGCTACCGTGGGCGA 62.753 66.667 0.00 0.00 41.33 5.54
397 398 1.838077 GTGGGTGCTACATAGGTCCTT 59.162 52.381 0.00 0.00 0.00 3.36
403 404 2.238646 TGCTACATAGGTCCTTGGGTTG 59.761 50.000 0.00 0.00 0.00 3.77
405 406 2.053747 ACATAGGTCCTTGGGTTGGA 57.946 50.000 0.00 0.00 0.00 3.53
426 427 4.564116 CCGGCGGCGAGTTCGTAT 62.564 66.667 34.49 0.00 42.22 3.06
434 435 2.536365 GGCGAGTTCGTATCATTGACA 58.464 47.619 3.27 0.00 42.22 3.58
436 437 2.535984 GCGAGTTCGTATCATTGACAGG 59.464 50.000 3.27 0.00 42.22 4.00
437 438 3.116300 CGAGTTCGTATCATTGACAGGG 58.884 50.000 0.00 0.00 34.11 4.45
466 468 4.280819 AGAAGGATTGAGACAGAGAGAGG 58.719 47.826 0.00 0.00 0.00 3.69
467 469 2.387757 AGGATTGAGACAGAGAGAGGC 58.612 52.381 0.00 0.00 0.00 4.70
469 471 2.499289 GGATTGAGACAGAGAGAGGCAA 59.501 50.000 0.00 0.00 0.00 4.52
470 472 3.430651 GGATTGAGACAGAGAGAGGCAAG 60.431 52.174 0.00 0.00 0.00 4.01
471 473 2.593925 TGAGACAGAGAGAGGCAAGA 57.406 50.000 0.00 0.00 0.00 3.02
472 474 2.445427 TGAGACAGAGAGAGGCAAGAG 58.555 52.381 0.00 0.00 0.00 2.85
473 475 2.224992 TGAGACAGAGAGAGGCAAGAGT 60.225 50.000 0.00 0.00 0.00 3.24
474 476 3.009584 TGAGACAGAGAGAGGCAAGAGTA 59.990 47.826 0.00 0.00 0.00 2.59
476 478 4.411927 AGACAGAGAGAGGCAAGAGTAAA 58.588 43.478 0.00 0.00 0.00 2.01
488 496 5.478332 AGGCAAGAGTAAAAGAAAAGGATGG 59.522 40.000 0.00 0.00 0.00 3.51
489 497 5.243954 GGCAAGAGTAAAAGAAAAGGATGGT 59.756 40.000 0.00 0.00 0.00 3.55
512 520 5.749109 GTGAACTAGGGATGTTCTGTAATCG 59.251 44.000 7.89 0.00 42.86 3.34
519 527 3.799420 GGATGTTCTGTAATCGCTGACTC 59.201 47.826 0.00 0.00 0.00 3.36
607 615 2.409870 GGGCAAATCAGACGGCTGG 61.410 63.158 20.50 2.61 42.53 4.85
609 617 2.042831 GCAAATCAGACGGCTGGCT 61.043 57.895 20.50 0.00 42.53 4.75
610 618 0.744414 GCAAATCAGACGGCTGGCTA 60.744 55.000 20.50 0.00 42.53 3.93
611 619 1.293924 CAAATCAGACGGCTGGCTAG 58.706 55.000 20.50 2.63 42.53 3.42
612 620 1.134699 CAAATCAGACGGCTGGCTAGA 60.135 52.381 20.50 1.10 42.53 2.43
627 640 1.941325 CTAGACGGTTGATCCTTGCC 58.059 55.000 0.00 0.00 0.00 4.52
634 647 0.899717 GTTGATCCTTGCCCAGCCAA 60.900 55.000 0.00 0.00 0.00 4.52
641 654 1.586154 CTTGCCCAGCCAACTAACGG 61.586 60.000 0.00 0.00 0.00 4.44
722 736 5.768164 TGGTCTTCTCCTAAACACCATTTTC 59.232 40.000 0.00 0.00 0.00 2.29
858 875 1.340991 ACCAACCAATTCCCATCGAGG 60.341 52.381 0.00 0.00 37.03 4.63
990 1007 0.460987 GACATCTGAAGTCCGGCCAG 60.461 60.000 2.24 1.34 0.00 4.85
991 1008 1.153289 CATCTGAAGTCCGGCCAGG 60.153 63.158 2.24 5.27 42.97 4.45
992 1009 2.370445 ATCTGAAGTCCGGCCAGGG 61.370 63.158 2.24 0.00 41.52 4.45
993 1010 4.101448 CTGAAGTCCGGCCAGGGG 62.101 72.222 2.24 0.00 41.52 4.79
1553 1580 1.899437 GAGAATGAGGCCACGACCCA 61.899 60.000 5.01 0.00 0.00 4.51
1795 1822 3.702555 GCGTGCGCAAGACGTTCT 61.703 61.111 27.63 0.00 46.11 3.01
1836 1863 1.486211 CCATCCTGTTCTCCTACCGT 58.514 55.000 0.00 0.00 0.00 4.83
1902 1929 2.048127 GAGCTCCGCAACCTCGTT 60.048 61.111 0.87 0.00 0.00 3.85
2252 2279 0.798776 CGGCCACAGCTAAGAGTTTG 59.201 55.000 2.24 0.00 39.73 2.93
2257 2284 4.253685 GCCACAGCTAAGAGTTTGATGTA 58.746 43.478 0.00 0.00 35.50 2.29
2266 2293 8.540388 AGCTAAGAGTTTGATGTACCAGATTAA 58.460 33.333 0.00 0.00 0.00 1.40
2272 2299 8.498054 AGTTTGATGTACCAGATTAATGTCAG 57.502 34.615 0.00 0.00 0.00 3.51
2315 2342 0.522180 TGAGAGACTCGCTTCGTTCC 59.478 55.000 7.75 0.00 32.35 3.62
2366 2393 1.002868 TGCCAGAGAAGCTGCCTTC 60.003 57.895 0.00 0.00 46.29 3.46
2392 2420 3.459232 TTCTCCTGGTCAGCAATATCG 57.541 47.619 0.00 0.00 0.00 2.92
2410 2438 6.823678 ATATCGTTAGTTTGTTCGTGGATC 57.176 37.500 0.00 0.00 0.00 3.36
2423 2451 2.230266 TCGTGGATCGATGTGTTCTTGA 59.770 45.455 0.54 0.00 44.01 3.02
2438 2466 5.122396 GTGTTCTTGAAATCGCAGTTATCCT 59.878 40.000 0.00 0.00 0.00 3.24
2460 2488 0.548510 ACCTTTCTATGCTCCAGGCC 59.451 55.000 0.00 0.00 40.92 5.19
2461 2489 0.533755 CCTTTCTATGCTCCAGGCCG 60.534 60.000 0.00 0.00 40.92 6.13
2463 2491 2.923426 TTTCTATGCTCCAGGCCGCG 62.923 60.000 0.00 0.00 40.92 6.46
2594 2629 7.335171 GCATCCTGCCTATTTTCTTTTCATTTT 59.665 33.333 0.00 0.00 37.42 1.82
2662 2700 3.064820 CGTCATTAATTTAACGCCAGGCT 59.935 43.478 10.54 0.00 0.00 4.58
2683 2721 4.802999 CTGCAGGCCTTCTTTCTAAAAAG 58.197 43.478 0.00 0.00 42.77 2.27
2763 2801 6.403866 TGCTTGGTGATTAGTTTGATTTGT 57.596 33.333 0.00 0.00 0.00 2.83
2783 2821 5.581126 TGTTGCTATATTTTGGGAAGCAG 57.419 39.130 0.00 0.00 43.47 4.24
2800 2838 5.393896 GGAAGCAGAAAATCATTTGGGAGAG 60.394 44.000 0.00 0.00 0.00 3.20
2801 2839 3.446516 AGCAGAAAATCATTTGGGAGAGC 59.553 43.478 0.00 0.00 0.00 4.09
2802 2840 3.446516 GCAGAAAATCATTTGGGAGAGCT 59.553 43.478 0.00 0.00 0.00 4.09
2803 2841 4.081807 GCAGAAAATCATTTGGGAGAGCTT 60.082 41.667 0.00 0.00 0.00 3.74
2804 2842 5.408356 CAGAAAATCATTTGGGAGAGCTTG 58.592 41.667 0.00 0.00 0.00 4.01
2805 2843 4.465305 AGAAAATCATTTGGGAGAGCTTGG 59.535 41.667 0.00 0.00 0.00 3.61
2806 2844 2.449137 ATCATTTGGGAGAGCTTGGG 57.551 50.000 0.00 0.00 0.00 4.12
2807 2845 1.075601 TCATTTGGGAGAGCTTGGGT 58.924 50.000 0.00 0.00 0.00 4.51
2808 2846 1.004745 TCATTTGGGAGAGCTTGGGTC 59.995 52.381 0.00 0.00 0.00 4.46
2809 2847 0.035056 ATTTGGGAGAGCTTGGGTCG 60.035 55.000 0.00 0.00 35.00 4.79
2810 2848 1.415672 TTTGGGAGAGCTTGGGTCGT 61.416 55.000 0.00 0.00 35.00 4.34
2811 2849 2.111999 TTGGGAGAGCTTGGGTCGTG 62.112 60.000 0.00 0.00 35.00 4.35
2812 2850 2.266055 GGAGAGCTTGGGTCGTGG 59.734 66.667 0.00 0.00 35.00 4.94
2813 2851 2.435059 GAGAGCTTGGGTCGTGGC 60.435 66.667 0.00 0.00 35.00 5.01
2814 2852 2.925170 AGAGCTTGGGTCGTGGCT 60.925 61.111 0.00 0.00 37.77 4.75
2815 2853 2.435059 GAGCTTGGGTCGTGGCTC 60.435 66.667 0.00 0.00 43.07 4.70
2816 2854 4.379243 AGCTTGGGTCGTGGCTCG 62.379 66.667 1.94 1.94 41.41 5.03
2818 2856 3.691342 CTTGGGTCGTGGCTCGGA 61.691 66.667 9.26 0.00 40.32 4.55
2819 2857 3.934391 CTTGGGTCGTGGCTCGGAC 62.934 68.421 9.26 6.13 40.32 4.79
2820 2858 4.988716 TGGGTCGTGGCTCGGACT 62.989 66.667 9.26 0.00 40.32 3.85
2821 2859 3.692406 GGGTCGTGGCTCGGACTT 61.692 66.667 9.26 0.00 40.32 3.01
2822 2860 2.126031 GGTCGTGGCTCGGACTTC 60.126 66.667 9.26 0.00 40.32 3.01
2823 2861 2.504244 GTCGTGGCTCGGACTTCG 60.504 66.667 9.26 0.00 40.32 3.79
2824 2862 3.744719 TCGTGGCTCGGACTTCGG 61.745 66.667 9.26 0.00 40.32 4.30
2825 2863 4.052229 CGTGGCTCGGACTTCGGT 62.052 66.667 0.13 0.00 39.77 4.69
2826 2864 2.693762 CGTGGCTCGGACTTCGGTA 61.694 63.158 0.13 0.00 39.77 4.02
2827 2865 1.139095 GTGGCTCGGACTTCGGTAG 59.861 63.158 0.00 0.00 39.77 3.18
2828 2866 1.303888 TGGCTCGGACTTCGGTAGT 60.304 57.895 0.00 0.00 40.71 2.73
2837 2875 3.337301 GACTTCGGTAGTCGGATCTTC 57.663 52.381 0.00 0.00 43.59 2.87
2838 2876 2.022934 ACTTCGGTAGTCGGATCTTCC 58.977 52.381 0.00 0.00 39.77 3.46
2839 2877 1.337387 CTTCGGTAGTCGGATCTTCCC 59.663 57.143 0.00 0.00 39.77 3.97
2840 2878 0.256752 TCGGTAGTCGGATCTTCCCA 59.743 55.000 0.00 0.00 39.77 4.37
2841 2879 0.669077 CGGTAGTCGGATCTTCCCAG 59.331 60.000 0.00 0.00 31.13 4.45
2842 2880 0.389757 GGTAGTCGGATCTTCCCAGC 59.610 60.000 0.00 0.00 31.13 4.85
2843 2881 0.030908 GTAGTCGGATCTTCCCAGCG 59.969 60.000 0.00 0.00 31.13 5.18
2844 2882 0.395311 TAGTCGGATCTTCCCAGCGT 60.395 55.000 0.00 0.00 31.13 5.07
2845 2883 1.519455 GTCGGATCTTCCCAGCGTG 60.519 63.158 0.00 0.00 31.13 5.34
2846 2884 1.982395 TCGGATCTTCCCAGCGTGT 60.982 57.895 0.00 0.00 31.13 4.49
2847 2885 1.519455 CGGATCTTCCCAGCGTGTC 60.519 63.158 0.00 0.00 31.13 3.67
2848 2886 1.153349 GGATCTTCCCAGCGTGTCC 60.153 63.158 0.00 0.00 0.00 4.02
2849 2887 1.519455 GATCTTCCCAGCGTGTCCG 60.519 63.158 0.00 0.00 37.07 4.79
2850 2888 2.907897 GATCTTCCCAGCGTGTCCGG 62.908 65.000 0.00 0.00 33.68 5.14
2851 2889 4.760047 CTTCCCAGCGTGTCCGGG 62.760 72.222 0.00 0.00 41.76 5.73
2859 2897 4.003788 CGTGTCCGGGGTGCTTCT 62.004 66.667 0.00 0.00 0.00 2.85
2860 2898 2.047179 GTGTCCGGGGTGCTTCTC 60.047 66.667 0.00 0.00 0.00 2.87
2861 2899 3.319198 TGTCCGGGGTGCTTCTCC 61.319 66.667 0.00 0.00 0.00 3.71
2866 2904 4.410400 GGGGTGCTTCTCCGTGGG 62.410 72.222 0.00 0.00 0.00 4.61
2867 2905 3.637273 GGGTGCTTCTCCGTGGGT 61.637 66.667 0.00 0.00 0.00 4.51
2868 2906 2.430367 GGTGCTTCTCCGTGGGTT 59.570 61.111 0.00 0.00 0.00 4.11
2869 2907 1.966451 GGTGCTTCTCCGTGGGTTG 60.966 63.158 0.00 0.00 0.00 3.77
2870 2908 2.281484 TGCTTCTCCGTGGGTTGC 60.281 61.111 0.00 0.00 0.00 4.17
2871 2909 3.056328 GCTTCTCCGTGGGTTGCC 61.056 66.667 0.00 0.00 0.00 4.52
2872 2910 2.750350 CTTCTCCGTGGGTTGCCT 59.250 61.111 0.00 0.00 0.00 4.75
2873 2911 1.980052 CTTCTCCGTGGGTTGCCTA 59.020 57.895 0.00 0.00 0.00 3.93
2874 2912 0.108138 CTTCTCCGTGGGTTGCCTAG 60.108 60.000 0.00 0.00 0.00 3.02
2875 2913 0.834687 TTCTCCGTGGGTTGCCTAGT 60.835 55.000 0.00 0.00 0.00 2.57
2876 2914 0.834687 TCTCCGTGGGTTGCCTAGTT 60.835 55.000 0.00 0.00 0.00 2.24
2877 2915 0.673644 CTCCGTGGGTTGCCTAGTTG 60.674 60.000 0.00 0.00 0.00 3.16
2878 2916 2.332654 CCGTGGGTTGCCTAGTTGC 61.333 63.158 0.00 0.00 0.00 4.17
2879 2917 1.302511 CGTGGGTTGCCTAGTTGCT 60.303 57.895 0.00 0.00 0.00 3.91
2880 2918 0.889186 CGTGGGTTGCCTAGTTGCTT 60.889 55.000 0.00 0.00 0.00 3.91
2881 2919 1.328279 GTGGGTTGCCTAGTTGCTTT 58.672 50.000 0.00 0.00 0.00 3.51
2882 2920 1.000274 GTGGGTTGCCTAGTTGCTTTG 60.000 52.381 0.00 0.00 0.00 2.77
2883 2921 1.133637 TGGGTTGCCTAGTTGCTTTGA 60.134 47.619 0.00 0.00 0.00 2.69
2884 2922 1.960689 GGGTTGCCTAGTTGCTTTGAA 59.039 47.619 0.00 0.00 0.00 2.69
2885 2923 2.364002 GGGTTGCCTAGTTGCTTTGAAA 59.636 45.455 0.00 0.00 0.00 2.69
2886 2924 3.006859 GGGTTGCCTAGTTGCTTTGAAAT 59.993 43.478 0.00 0.00 0.00 2.17
2887 2925 4.237724 GGTTGCCTAGTTGCTTTGAAATC 58.762 43.478 0.00 0.00 0.00 2.17
2888 2926 3.829886 TGCCTAGTTGCTTTGAAATCG 57.170 42.857 0.00 0.00 0.00 3.34
2889 2927 2.487762 TGCCTAGTTGCTTTGAAATCGG 59.512 45.455 0.00 0.00 0.00 4.18
2890 2928 2.747446 GCCTAGTTGCTTTGAAATCGGA 59.253 45.455 0.00 0.00 0.00 4.55
2891 2929 3.181506 GCCTAGTTGCTTTGAAATCGGAG 60.182 47.826 0.00 0.00 0.00 4.63
2892 2930 2.997485 AGTTGCTTTGAAATCGGAGC 57.003 45.000 0.00 0.00 35.74 4.70
2893 2931 2.508526 AGTTGCTTTGAAATCGGAGCT 58.491 42.857 0.00 0.00 36.16 4.09
2894 2932 2.227388 AGTTGCTTTGAAATCGGAGCTG 59.773 45.455 0.00 0.00 36.16 4.24
2895 2933 0.523072 TGCTTTGAAATCGGAGCTGC 59.477 50.000 0.00 0.00 36.16 5.25
2896 2934 0.522076 GCTTTGAAATCGGAGCTGCG 60.522 55.000 22.84 22.84 32.54 5.18
2897 2935 0.097674 CTTTGAAATCGGAGCTGCGG 59.902 55.000 27.80 9.24 0.00 5.69
2898 2936 0.605319 TTTGAAATCGGAGCTGCGGT 60.605 50.000 27.80 19.33 0.00 5.68
2899 2937 1.298157 TTGAAATCGGAGCTGCGGTG 61.298 55.000 27.80 0.00 0.00 4.94
2900 2938 2.436646 AAATCGGAGCTGCGGTGG 60.437 61.111 27.80 0.00 0.00 4.61
2901 2939 2.852495 GAAATCGGAGCTGCGGTGGA 62.852 60.000 27.80 8.65 0.00 4.02
2902 2940 2.859273 AAATCGGAGCTGCGGTGGAG 62.859 60.000 27.80 0.00 0.00 3.86
2916 2954 2.997897 GGAGCGAGTCCAGGTGGT 60.998 66.667 0.00 0.00 46.10 4.16
2917 2955 2.262915 GAGCGAGTCCAGGTGGTG 59.737 66.667 0.00 0.00 36.34 4.17
2918 2956 2.203640 AGCGAGTCCAGGTGGTGA 60.204 61.111 0.00 0.00 36.34 4.02
2919 2957 2.048127 GCGAGTCCAGGTGGTGAC 60.048 66.667 0.00 0.00 36.34 3.67
2920 2958 2.258591 CGAGTCCAGGTGGTGACG 59.741 66.667 0.00 0.00 36.61 4.35
2921 2959 2.265904 CGAGTCCAGGTGGTGACGA 61.266 63.158 0.00 0.00 36.61 4.20
2922 2960 1.595993 CGAGTCCAGGTGGTGACGAT 61.596 60.000 0.00 0.00 36.61 3.73
2923 2961 0.108615 GAGTCCAGGTGGTGACGATG 60.109 60.000 0.00 0.00 36.61 3.84
2924 2962 0.541998 AGTCCAGGTGGTGACGATGA 60.542 55.000 0.00 0.00 36.61 2.92
2925 2963 0.389948 GTCCAGGTGGTGACGATGAC 60.390 60.000 0.00 0.00 36.34 3.06
2926 2964 0.830023 TCCAGGTGGTGACGATGACA 60.830 55.000 0.00 0.00 36.34 3.58
2927 2965 0.250234 CCAGGTGGTGACGATGACAT 59.750 55.000 0.00 0.00 0.00 3.06
2928 2966 1.362768 CAGGTGGTGACGATGACATG 58.637 55.000 0.00 0.00 0.00 3.21
2929 2967 0.391661 AGGTGGTGACGATGACATGC 60.392 55.000 0.00 0.00 0.00 4.06
2930 2968 1.695893 GGTGGTGACGATGACATGCG 61.696 60.000 0.00 0.00 0.00 4.73
2931 2969 2.100031 TGGTGACGATGACATGCGC 61.100 57.895 0.00 0.00 0.00 6.09
2932 2970 1.811266 GGTGACGATGACATGCGCT 60.811 57.895 9.73 0.00 0.00 5.92
2933 2971 1.633171 GTGACGATGACATGCGCTC 59.367 57.895 9.73 0.00 0.00 5.03
2934 2972 1.873572 TGACGATGACATGCGCTCG 60.874 57.895 9.73 11.23 37.17 5.03
2935 2973 2.580470 GACGATGACATGCGCTCGG 61.580 63.158 17.11 5.79 35.52 4.63
2936 2974 2.583319 CGATGACATGCGCTCGGT 60.583 61.111 9.73 3.55 0.00 4.69
2937 2975 2.863853 CGATGACATGCGCTCGGTG 61.864 63.158 9.73 5.01 0.00 4.94
2938 2976 2.512286 ATGACATGCGCTCGGTGG 60.512 61.111 9.73 0.00 0.00 4.61
2939 2977 3.315142 ATGACATGCGCTCGGTGGT 62.315 57.895 9.73 0.00 0.00 4.16
2940 2978 3.188786 GACATGCGCTCGGTGGTC 61.189 66.667 9.73 3.50 0.00 4.02
2977 3015 2.427232 CAAGCATGCATATTTCCCGG 57.573 50.000 21.98 0.00 0.00 5.73
2978 3016 1.000060 CAAGCATGCATATTTCCCGGG 60.000 52.381 21.98 16.85 0.00 5.73
2979 3017 0.185901 AGCATGCATATTTCCCGGGT 59.814 50.000 22.86 3.24 0.00 5.28
2980 3018 0.314935 GCATGCATATTTCCCGGGTG 59.685 55.000 22.86 12.48 0.00 4.61
2981 3019 1.979855 CATGCATATTTCCCGGGTGA 58.020 50.000 22.86 11.00 0.00 4.02
2982 3020 2.517959 CATGCATATTTCCCGGGTGAT 58.482 47.619 22.86 17.67 0.00 3.06
2983 3021 1.979855 TGCATATTTCCCGGGTGATG 58.020 50.000 22.86 19.16 0.00 3.07
2984 3022 0.598065 GCATATTTCCCGGGTGATGC 59.402 55.000 22.86 24.25 33.59 3.91
2985 3023 1.247567 CATATTTCCCGGGTGATGCC 58.752 55.000 22.86 0.00 0.00 4.40
2986 3024 1.149101 ATATTTCCCGGGTGATGCCT 58.851 50.000 22.86 2.05 37.43 4.75
2987 3025 0.182537 TATTTCCCGGGTGATGCCTG 59.817 55.000 22.86 0.00 43.41 4.85
2988 3026 1.863155 ATTTCCCGGGTGATGCCTGT 61.863 55.000 22.86 0.00 42.20 4.00
2989 3027 2.478335 TTTCCCGGGTGATGCCTGTC 62.478 60.000 22.86 0.00 42.20 3.51
2990 3028 4.838152 CCCGGGTGATGCCTGTCG 62.838 72.222 14.18 0.00 42.20 4.35
2991 3029 4.082523 CCGGGTGATGCCTGTCGT 62.083 66.667 0.00 0.00 42.20 4.34
2992 3030 2.509336 CGGGTGATGCCTGTCGTC 60.509 66.667 0.00 0.00 38.84 4.20
2993 3031 2.662596 GGGTGATGCCTGTCGTCA 59.337 61.111 0.00 0.00 38.33 4.35
2994 3032 1.003839 GGGTGATGCCTGTCGTCAA 60.004 57.895 0.00 0.00 41.97 3.18
2995 3033 0.605319 GGGTGATGCCTGTCGTCAAA 60.605 55.000 0.00 0.00 41.97 2.69
2996 3034 0.798776 GGTGATGCCTGTCGTCAAAG 59.201 55.000 0.00 0.00 41.97 2.77
2997 3035 1.512926 GTGATGCCTGTCGTCAAAGT 58.487 50.000 0.00 0.00 41.97 2.66
2998 3036 1.461127 GTGATGCCTGTCGTCAAAGTC 59.539 52.381 0.00 0.00 41.97 3.01
2999 3037 0.716108 GATGCCTGTCGTCAAAGTCG 59.284 55.000 0.00 0.00 0.00 4.18
3000 3038 0.670546 ATGCCTGTCGTCAAAGTCGG 60.671 55.000 0.00 0.00 0.00 4.79
3001 3039 1.006571 GCCTGTCGTCAAAGTCGGA 60.007 57.895 0.00 0.00 0.00 4.55
3002 3040 1.009389 GCCTGTCGTCAAAGTCGGAG 61.009 60.000 0.00 0.00 0.00 4.63
3003 3041 0.596577 CCTGTCGTCAAAGTCGGAGA 59.403 55.000 0.00 0.00 0.00 3.71
3004 3042 1.202582 CCTGTCGTCAAAGTCGGAGAT 59.797 52.381 0.00 0.00 40.67 2.75
3005 3043 2.422479 CCTGTCGTCAAAGTCGGAGATA 59.578 50.000 0.00 0.00 40.67 1.98
3006 3044 3.066900 CCTGTCGTCAAAGTCGGAGATAT 59.933 47.826 0.00 0.00 40.67 1.63
3007 3045 4.283678 CTGTCGTCAAAGTCGGAGATATC 58.716 47.826 0.00 0.00 40.67 1.63
3008 3046 3.692593 TGTCGTCAAAGTCGGAGATATCA 59.307 43.478 5.32 0.00 40.67 2.15
3009 3047 4.201920 TGTCGTCAAAGTCGGAGATATCAG 60.202 45.833 5.32 0.00 40.67 2.90
3010 3048 3.945921 TCGTCAAAGTCGGAGATATCAGT 59.054 43.478 5.32 0.00 40.67 3.41
3011 3049 4.398358 TCGTCAAAGTCGGAGATATCAGTT 59.602 41.667 5.32 0.00 40.67 3.16
3012 3050 4.500837 CGTCAAAGTCGGAGATATCAGTTG 59.499 45.833 5.32 0.00 40.67 3.16
3013 3051 5.411781 GTCAAAGTCGGAGATATCAGTTGT 58.588 41.667 5.32 0.00 40.67 3.32
3014 3052 5.869888 GTCAAAGTCGGAGATATCAGTTGTT 59.130 40.000 5.32 0.00 40.67 2.83
3015 3053 6.035112 GTCAAAGTCGGAGATATCAGTTGTTC 59.965 42.308 5.32 0.00 40.67 3.18
3016 3054 5.661056 AAGTCGGAGATATCAGTTGTTCA 57.339 39.130 5.32 0.00 40.67 3.18
3017 3055 5.860941 AGTCGGAGATATCAGTTGTTCAT 57.139 39.130 5.32 0.00 40.67 2.57
3018 3056 5.595885 AGTCGGAGATATCAGTTGTTCATG 58.404 41.667 5.32 0.00 40.67 3.07
3019 3057 4.210120 GTCGGAGATATCAGTTGTTCATGC 59.790 45.833 5.32 0.00 40.67 4.06
3020 3058 3.183172 CGGAGATATCAGTTGTTCATGCG 59.817 47.826 5.32 0.00 0.00 4.73
3021 3059 4.122776 GGAGATATCAGTTGTTCATGCGT 58.877 43.478 5.32 0.00 0.00 5.24
3022 3060 4.025396 GGAGATATCAGTTGTTCATGCGTG 60.025 45.833 5.32 0.00 0.00 5.34
3023 3061 4.507710 AGATATCAGTTGTTCATGCGTGT 58.492 39.130 5.68 0.00 0.00 4.49
3024 3062 2.975410 ATCAGTTGTTCATGCGTGTG 57.025 45.000 5.68 0.00 0.00 3.82
3025 3063 0.943673 TCAGTTGTTCATGCGTGTGG 59.056 50.000 5.68 0.00 0.00 4.17
3026 3064 0.661187 CAGTTGTTCATGCGTGTGGC 60.661 55.000 5.68 0.00 43.96 5.01
3027 3065 1.371635 GTTGTTCATGCGTGTGGCC 60.372 57.895 5.68 0.00 42.61 5.36
3028 3066 1.825622 TTGTTCATGCGTGTGGCCA 60.826 52.632 0.00 0.00 42.61 5.36
3029 3067 1.177895 TTGTTCATGCGTGTGGCCAT 61.178 50.000 9.72 0.00 42.61 4.40
3030 3068 1.137404 GTTCATGCGTGTGGCCATC 59.863 57.895 9.72 4.56 42.61 3.51
3031 3069 1.002257 TTCATGCGTGTGGCCATCT 60.002 52.632 9.72 0.00 42.61 2.90
3032 3070 1.307355 TTCATGCGTGTGGCCATCTG 61.307 55.000 9.72 2.11 42.61 2.90
3033 3071 2.042259 CATGCGTGTGGCCATCTGT 61.042 57.895 9.72 0.00 42.61 3.41
3034 3072 1.303561 ATGCGTGTGGCCATCTGTT 60.304 52.632 9.72 0.00 42.61 3.16
3035 3073 1.588824 ATGCGTGTGGCCATCTGTTG 61.589 55.000 9.72 0.00 42.61 3.33
3043 3081 2.562912 CCATCTGTTGGCACGTGC 59.437 61.111 32.15 32.15 39.09 5.34
3061 3099 2.380081 CCGTCGTGGCTTATGTTCC 58.620 57.895 0.00 0.00 0.00 3.62
3062 3100 0.390603 CCGTCGTGGCTTATGTTCCA 60.391 55.000 0.00 0.00 0.00 3.53
3063 3101 1.651987 CGTCGTGGCTTATGTTCCAT 58.348 50.000 0.00 0.00 34.47 3.41
3064 3102 1.327460 CGTCGTGGCTTATGTTCCATG 59.673 52.381 0.00 0.00 39.99 3.66
3065 3103 2.356135 GTCGTGGCTTATGTTCCATGT 58.644 47.619 0.00 0.00 39.69 3.21
3066 3104 2.351726 GTCGTGGCTTATGTTCCATGTC 59.648 50.000 0.00 0.00 39.69 3.06
3067 3105 1.327460 CGTGGCTTATGTTCCATGTCG 59.673 52.381 0.00 0.00 35.25 4.35
3068 3106 1.670811 GTGGCTTATGTTCCATGTCGG 59.329 52.381 0.00 0.00 34.47 4.79
3069 3107 1.280710 TGGCTTATGTTCCATGTCGGT 59.719 47.619 0.00 0.00 35.57 4.69
3070 3108 1.670811 GGCTTATGTTCCATGTCGGTG 59.329 52.381 0.00 0.00 35.57 4.94
3071 3109 1.670811 GCTTATGTTCCATGTCGGTGG 59.329 52.381 0.00 0.00 40.76 4.61
3072 3110 1.670811 CTTATGTTCCATGTCGGTGGC 59.329 52.381 0.00 0.00 39.19 5.01
3073 3111 0.107410 TATGTTCCATGTCGGTGGCC 60.107 55.000 0.00 0.00 39.19 5.36
3074 3112 2.033448 GTTCCATGTCGGTGGCCA 59.967 61.111 0.00 0.00 39.19 5.36
3075 3113 2.040544 GTTCCATGTCGGTGGCCAG 61.041 63.158 5.11 0.00 39.19 4.85
3076 3114 3.266686 TTCCATGTCGGTGGCCAGG 62.267 63.158 5.11 0.97 39.19 4.45
3077 3115 4.033776 CCATGTCGGTGGCCAGGT 62.034 66.667 5.11 0.00 31.43 4.00
3078 3116 2.034066 CATGTCGGTGGCCAGGTT 59.966 61.111 5.11 0.00 0.00 3.50
3079 3117 2.034066 ATGTCGGTGGCCAGGTTG 59.966 61.111 5.11 0.00 0.00 3.77
3080 3118 3.567579 ATGTCGGTGGCCAGGTTGG 62.568 63.158 5.11 0.00 41.55 3.77
3089 3127 2.598394 CCAGGTTGGCTGGTGGTG 60.598 66.667 0.00 0.00 37.22 4.17
3090 3128 3.297620 CAGGTTGGCTGGTGGTGC 61.298 66.667 0.00 0.00 0.00 5.01
3096 3134 4.684134 GGCTGGTGGTGCCCATGT 62.684 66.667 0.00 0.00 44.32 3.21
3097 3135 3.064324 GCTGGTGGTGCCCATGTC 61.064 66.667 0.00 0.00 35.28 3.06
3098 3136 2.759114 CTGGTGGTGCCCATGTCT 59.241 61.111 0.00 0.00 35.28 3.41
3099 3137 1.075482 CTGGTGGTGCCCATGTCTT 59.925 57.895 0.00 0.00 35.28 3.01
3100 3138 0.540365 CTGGTGGTGCCCATGTCTTT 60.540 55.000 0.00 0.00 35.28 2.52
3101 3139 0.774276 TGGTGGTGCCCATGTCTTTA 59.226 50.000 0.00 0.00 35.28 1.85
3102 3140 1.357420 TGGTGGTGCCCATGTCTTTAT 59.643 47.619 0.00 0.00 35.28 1.40
3103 3141 1.750778 GGTGGTGCCCATGTCTTTATG 59.249 52.381 0.00 0.00 35.28 1.90
3104 3142 1.750778 GTGGTGCCCATGTCTTTATGG 59.249 52.381 0.00 0.00 45.83 2.74
3105 3143 0.746659 GGTGCCCATGTCTTTATGGC 59.253 55.000 0.00 0.41 45.07 4.40
3106 3144 1.686115 GGTGCCCATGTCTTTATGGCT 60.686 52.381 8.14 0.00 45.07 4.75
3107 3145 2.102578 GTGCCCATGTCTTTATGGCTT 58.897 47.619 8.14 0.00 45.07 4.35
3108 3146 2.101783 TGCCCATGTCTTTATGGCTTG 58.898 47.619 8.14 0.00 45.07 4.01
3109 3147 1.410153 GCCCATGTCTTTATGGCTTGG 59.590 52.381 0.00 0.00 45.07 3.61
3111 3149 2.738743 CCATGTCTTTATGGCTTGGGT 58.261 47.619 0.00 0.00 41.02 4.51
3112 3150 3.099141 CCATGTCTTTATGGCTTGGGTT 58.901 45.455 0.00 0.00 41.02 4.11
3113 3151 3.119029 CCATGTCTTTATGGCTTGGGTTG 60.119 47.826 0.00 0.00 41.02 3.77
3114 3152 3.237268 TGTCTTTATGGCTTGGGTTGT 57.763 42.857 0.00 0.00 0.00 3.32
3115 3153 2.890311 TGTCTTTATGGCTTGGGTTGTG 59.110 45.455 0.00 0.00 0.00 3.33
3116 3154 2.890945 GTCTTTATGGCTTGGGTTGTGT 59.109 45.455 0.00 0.00 0.00 3.72
3117 3155 3.057526 GTCTTTATGGCTTGGGTTGTGTC 60.058 47.826 0.00 0.00 0.00 3.67
3118 3156 1.529226 TTATGGCTTGGGTTGTGTCG 58.471 50.000 0.00 0.00 0.00 4.35
3119 3157 0.322098 TATGGCTTGGGTTGTGTCGG 60.322 55.000 0.00 0.00 0.00 4.79
3120 3158 2.203294 GGCTTGGGTTGTGTCGGT 60.203 61.111 0.00 0.00 0.00 4.69
3121 3159 1.826487 GGCTTGGGTTGTGTCGGTT 60.826 57.895 0.00 0.00 0.00 4.44
3122 3160 1.388837 GGCTTGGGTTGTGTCGGTTT 61.389 55.000 0.00 0.00 0.00 3.27
3123 3161 0.458260 GCTTGGGTTGTGTCGGTTTT 59.542 50.000 0.00 0.00 0.00 2.43
3124 3162 1.677052 GCTTGGGTTGTGTCGGTTTTA 59.323 47.619 0.00 0.00 0.00 1.52
3125 3163 2.287368 GCTTGGGTTGTGTCGGTTTTAG 60.287 50.000 0.00 0.00 0.00 1.85
3126 3164 1.310904 TGGGTTGTGTCGGTTTTAGC 58.689 50.000 0.00 0.00 0.00 3.09
3127 3165 0.594602 GGGTTGTGTCGGTTTTAGCC 59.405 55.000 0.00 0.00 0.00 3.93
3128 3166 0.594602 GGTTGTGTCGGTTTTAGCCC 59.405 55.000 0.00 0.00 0.00 5.19
3129 3167 0.236449 GTTGTGTCGGTTTTAGCCCG 59.764 55.000 0.00 0.00 46.83 6.13
3137 3175 2.554806 GGTTTTAGCCCGATTTTCCG 57.445 50.000 0.00 0.00 0.00 4.30
3138 3176 1.814394 GGTTTTAGCCCGATTTTCCGT 59.186 47.619 0.00 0.00 0.00 4.69
3139 3177 2.159476 GGTTTTAGCCCGATTTTCCGTC 60.159 50.000 0.00 0.00 0.00 4.79
3140 3178 2.476126 TTTAGCCCGATTTTCCGTCA 57.524 45.000 0.00 0.00 0.00 4.35
3141 3179 2.476126 TTAGCCCGATTTTCCGTCAA 57.524 45.000 0.00 0.00 0.00 3.18
3142 3180 2.702592 TAGCCCGATTTTCCGTCAAT 57.297 45.000 0.00 0.00 0.00 2.57
3143 3181 1.834188 AGCCCGATTTTCCGTCAATT 58.166 45.000 0.00 0.00 0.00 2.32
3144 3182 2.993937 AGCCCGATTTTCCGTCAATTA 58.006 42.857 0.00 0.00 0.00 1.40
3145 3183 3.349022 AGCCCGATTTTCCGTCAATTAA 58.651 40.909 0.00 0.00 0.00 1.40
3146 3184 3.128068 AGCCCGATTTTCCGTCAATTAAC 59.872 43.478 0.00 0.00 0.00 2.01
3147 3185 3.732774 GCCCGATTTTCCGTCAATTAACC 60.733 47.826 0.00 0.00 0.00 2.85
3148 3186 3.440872 CCCGATTTTCCGTCAATTAACCA 59.559 43.478 0.00 0.00 0.00 3.67
3149 3187 4.438200 CCCGATTTTCCGTCAATTAACCAG 60.438 45.833 0.00 0.00 0.00 4.00
3150 3188 4.438200 CCGATTTTCCGTCAATTAACCAGG 60.438 45.833 0.00 0.00 0.00 4.45
3151 3189 3.926821 TTTTCCGTCAATTAACCAGGC 57.073 42.857 0.00 0.00 0.00 4.85
3152 3190 2.570415 TTCCGTCAATTAACCAGGCA 57.430 45.000 0.00 0.00 0.00 4.75
3153 3191 2.570415 TCCGTCAATTAACCAGGCAA 57.430 45.000 0.00 0.00 0.00 4.52
3154 3192 3.080300 TCCGTCAATTAACCAGGCAAT 57.920 42.857 0.00 0.00 0.00 3.56
3155 3193 3.426615 TCCGTCAATTAACCAGGCAATT 58.573 40.909 0.00 0.00 0.00 2.32
3156 3194 3.442273 TCCGTCAATTAACCAGGCAATTC 59.558 43.478 0.00 0.00 0.00 2.17
3157 3195 3.428862 CCGTCAATTAACCAGGCAATTCC 60.429 47.826 0.00 0.00 0.00 3.01
3158 3196 3.192422 CGTCAATTAACCAGGCAATTCCA 59.808 43.478 0.00 0.00 37.29 3.53
3159 3197 4.321601 CGTCAATTAACCAGGCAATTCCAA 60.322 41.667 0.00 0.00 37.29 3.53
3160 3198 5.546526 GTCAATTAACCAGGCAATTCCAAA 58.453 37.500 0.00 0.00 37.29 3.28
3161 3199 6.172630 GTCAATTAACCAGGCAATTCCAAAT 58.827 36.000 0.00 0.00 37.29 2.32
3162 3200 6.654582 GTCAATTAACCAGGCAATTCCAAATT 59.345 34.615 0.00 0.00 37.29 1.82
3163 3201 6.878389 TCAATTAACCAGGCAATTCCAAATTC 59.122 34.615 0.00 0.00 37.29 2.17
3164 3202 6.625532 ATTAACCAGGCAATTCCAAATTCT 57.374 33.333 0.00 0.00 37.29 2.40
3165 3203 4.980339 AACCAGGCAATTCCAAATTCTT 57.020 36.364 0.00 0.00 37.29 2.52
3166 3204 4.541973 ACCAGGCAATTCCAAATTCTTC 57.458 40.909 0.00 0.00 37.29 2.87
3167 3205 4.162651 ACCAGGCAATTCCAAATTCTTCT 58.837 39.130 0.00 0.00 37.29 2.85
3168 3206 4.594491 ACCAGGCAATTCCAAATTCTTCTT 59.406 37.500 0.00 0.00 37.29 2.52
3169 3207 5.779771 ACCAGGCAATTCCAAATTCTTCTTA 59.220 36.000 0.00 0.00 37.29 2.10
3170 3208 6.269769 ACCAGGCAATTCCAAATTCTTCTTAA 59.730 34.615 0.00 0.00 37.29 1.85
3171 3209 7.038088 ACCAGGCAATTCCAAATTCTTCTTAAT 60.038 33.333 0.00 0.00 37.29 1.40
3172 3210 7.493645 CCAGGCAATTCCAAATTCTTCTTAATC 59.506 37.037 0.00 0.00 37.29 1.75
3173 3211 8.036575 CAGGCAATTCCAAATTCTTCTTAATCA 58.963 33.333 0.00 0.00 37.29 2.57
3174 3212 8.596293 AGGCAATTCCAAATTCTTCTTAATCAA 58.404 29.630 0.00 0.00 37.29 2.57
3175 3213 9.387257 GGCAATTCCAAATTCTTCTTAATCAAT 57.613 29.630 0.00 0.00 34.01 2.57
3185 3223 9.947433 AATTCTTCTTAATCAATGAAAATGGCA 57.053 25.926 0.00 0.00 0.00 4.92
3186 3224 8.991243 TTCTTCTTAATCAATGAAAATGGCAG 57.009 30.769 0.00 0.00 0.00 4.85
3187 3225 7.549839 TCTTCTTAATCAATGAAAATGGCAGG 58.450 34.615 0.00 0.00 0.00 4.85
3188 3226 6.855763 TCTTAATCAATGAAAATGGCAGGT 57.144 33.333 0.00 0.00 0.00 4.00
3189 3227 6.866480 TCTTAATCAATGAAAATGGCAGGTC 58.134 36.000 0.00 0.00 0.00 3.85
3190 3228 6.664816 TCTTAATCAATGAAAATGGCAGGTCT 59.335 34.615 0.00 0.00 0.00 3.85
3191 3229 5.750352 AATCAATGAAAATGGCAGGTCTT 57.250 34.783 0.00 0.00 0.00 3.01
3192 3230 5.750352 ATCAATGAAAATGGCAGGTCTTT 57.250 34.783 0.00 0.00 0.00 2.52
3193 3231 5.549742 TCAATGAAAATGGCAGGTCTTTT 57.450 34.783 0.00 0.00 0.00 2.27
3194 3232 5.299148 TCAATGAAAATGGCAGGTCTTTTG 58.701 37.500 1.54 4.00 0.00 2.44
3195 3233 3.110447 TGAAAATGGCAGGTCTTTTGC 57.890 42.857 1.54 0.00 40.80 3.68
3196 3234 2.699846 TGAAAATGGCAGGTCTTTTGCT 59.300 40.909 1.54 0.00 41.27 3.91
3197 3235 3.134442 TGAAAATGGCAGGTCTTTTGCTT 59.866 39.130 1.54 0.00 41.27 3.91
3198 3236 3.843893 AAATGGCAGGTCTTTTGCTTT 57.156 38.095 0.00 0.00 41.27 3.51
3199 3237 2.825861 ATGGCAGGTCTTTTGCTTTG 57.174 45.000 0.00 0.00 41.27 2.77
3200 3238 1.484038 TGGCAGGTCTTTTGCTTTGT 58.516 45.000 0.00 0.00 41.27 2.83
3201 3239 1.830477 TGGCAGGTCTTTTGCTTTGTT 59.170 42.857 0.00 0.00 41.27 2.83
3202 3240 2.235898 TGGCAGGTCTTTTGCTTTGTTT 59.764 40.909 0.00 0.00 41.27 2.83
3203 3241 3.449018 TGGCAGGTCTTTTGCTTTGTTTA 59.551 39.130 0.00 0.00 41.27 2.01
3204 3242 4.081420 TGGCAGGTCTTTTGCTTTGTTTAA 60.081 37.500 0.00 0.00 41.27 1.52
3205 3243 4.873259 GGCAGGTCTTTTGCTTTGTTTAAA 59.127 37.500 0.00 0.00 41.27 1.52
3206 3244 5.352846 GGCAGGTCTTTTGCTTTGTTTAAAA 59.647 36.000 0.00 0.00 41.27 1.52
3207 3245 6.128145 GGCAGGTCTTTTGCTTTGTTTAAAAA 60.128 34.615 0.00 0.00 41.27 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 6.235664 GTGAAGAGGGTGGTTCATTTACTTA 58.764 40.000 0.00 0.00 35.22 2.24
19 20 5.070685 GTGAAGAGGGTGGTTCATTTACTT 58.929 41.667 0.00 0.00 35.22 2.24
32 33 3.191888 AGTGTATGAGGTGAAGAGGGT 57.808 47.619 0.00 0.00 0.00 4.34
50 51 1.435256 ACCAAAGGCCACTCACTAGT 58.565 50.000 5.01 0.00 35.91 2.57
52 53 1.278127 GCTACCAAAGGCCACTCACTA 59.722 52.381 5.01 0.00 0.00 2.74
59 60 2.160171 AGGGTGCTACCAAAGGCCA 61.160 57.895 5.01 0.00 41.02 5.36
85 86 1.885049 ACTGATGGATGCTACCTGGT 58.115 50.000 4.05 4.05 0.00 4.00
91 92 4.577693 GCAAAGATCAACTGATGGATGCTA 59.422 41.667 0.00 0.00 34.37 3.49
159 160 3.046087 CAGACACCGGTGCTGCAG 61.046 66.667 34.26 16.50 31.71 4.41
222 223 3.564027 GCTGCATACGTGGCGTCC 61.564 66.667 0.00 0.00 41.54 4.79
300 301 1.528129 GCTCCTACTGTTGCAAGCTT 58.472 50.000 0.00 0.00 0.00 3.74
426 427 2.525368 TCTCGTTCTCCCTGTCAATGA 58.475 47.619 0.00 0.00 0.00 2.57
434 435 2.763448 CTCAATCCTTCTCGTTCTCCCT 59.237 50.000 0.00 0.00 0.00 4.20
436 437 3.193691 TGTCTCAATCCTTCTCGTTCTCC 59.806 47.826 0.00 0.00 0.00 3.71
437 438 4.156922 TCTGTCTCAATCCTTCTCGTTCTC 59.843 45.833 0.00 0.00 0.00 2.87
466 468 6.016276 TCACCATCCTTTTCTTTTACTCTTGC 60.016 38.462 0.00 0.00 0.00 4.01
467 469 7.510549 TCACCATCCTTTTCTTTTACTCTTG 57.489 36.000 0.00 0.00 0.00 3.02
469 471 7.290813 AGTTCACCATCCTTTTCTTTTACTCT 58.709 34.615 0.00 0.00 0.00 3.24
470 472 7.511959 AGTTCACCATCCTTTTCTTTTACTC 57.488 36.000 0.00 0.00 0.00 2.59
471 473 7.665974 CCTAGTTCACCATCCTTTTCTTTTACT 59.334 37.037 0.00 0.00 0.00 2.24
472 474 7.094334 CCCTAGTTCACCATCCTTTTCTTTTAC 60.094 40.741 0.00 0.00 0.00 2.01
473 475 6.946009 CCCTAGTTCACCATCCTTTTCTTTTA 59.054 38.462 0.00 0.00 0.00 1.52
474 476 5.775195 CCCTAGTTCACCATCCTTTTCTTTT 59.225 40.000 0.00 0.00 0.00 2.27
476 478 4.601857 TCCCTAGTTCACCATCCTTTTCTT 59.398 41.667 0.00 0.00 0.00 2.52
488 496 5.749109 CGATTACAGAACATCCCTAGTTCAC 59.251 44.000 8.54 0.00 45.93 3.18
489 497 5.681437 GCGATTACAGAACATCCCTAGTTCA 60.681 44.000 8.54 0.00 45.93 3.18
512 520 1.812922 CACATGGCTCCGAGTCAGC 60.813 63.158 8.95 0.00 30.91 4.26
519 527 1.153369 CCACCTACACATGGCTCCG 60.153 63.158 0.00 0.00 0.00 4.63
607 615 1.291132 GCAAGGATCAACCGTCTAGC 58.709 55.000 0.00 0.00 44.74 3.42
609 617 0.539986 GGGCAAGGATCAACCGTCTA 59.460 55.000 0.00 0.00 44.74 2.59
610 618 1.299976 GGGCAAGGATCAACCGTCT 59.700 57.895 0.00 0.00 44.74 4.18
611 619 1.002624 TGGGCAAGGATCAACCGTC 60.003 57.895 0.00 0.00 44.74 4.79
612 620 1.002134 CTGGGCAAGGATCAACCGT 60.002 57.895 0.00 0.00 44.74 4.83
678 691 7.000472 AGACCATTGATAACCATATGACAAGG 59.000 38.462 3.65 4.68 0.00 3.61
814 831 7.201839 GGTGTTTAATTAGGCCAATAAATCGGA 60.202 37.037 5.01 0.00 0.00 4.55
993 1010 3.312718 TTGCACCCCATTGCTGGC 61.313 61.111 0.00 0.00 43.41 4.85
994 1011 2.162338 CTGTTGCACCCCATTGCTGG 62.162 60.000 0.00 0.00 43.41 4.85
995 1012 1.290955 CTGTTGCACCCCATTGCTG 59.709 57.895 0.00 0.00 43.41 4.41
996 1013 2.576832 GCTGTTGCACCCCATTGCT 61.577 57.895 0.00 0.00 43.41 3.91
1500 1527 2.048127 GGGTGAGACGGTGACTGC 60.048 66.667 0.00 0.00 0.00 4.40
1564 1591 4.003788 CACCTCGTCCAAGGCGGT 62.004 66.667 3.77 0.00 40.34 5.68
1600 1627 2.436646 GGTCACCTCCGGCATGTG 60.437 66.667 0.00 3.82 0.00 3.21
2085 2112 3.423154 GGCAGGAACCGCAAGTCG 61.423 66.667 9.06 0.00 38.08 4.18
2164 2191 1.512926 GTGCACTCCTCGAACATGTT 58.487 50.000 11.78 11.78 0.00 2.71
2217 2244 1.668294 CCGTCAGAGGCAACAGACT 59.332 57.895 0.00 0.00 41.41 3.24
2252 2279 6.504398 TCGTCTGACATTAATCTGGTACATC 58.496 40.000 8.73 0.00 38.20 3.06
2257 2284 3.769844 ACCTCGTCTGACATTAATCTGGT 59.230 43.478 8.73 1.31 0.00 4.00
2327 2354 3.370061 CAGCACGGTAAAGTAAGGCTAAC 59.630 47.826 0.00 0.00 0.00 2.34
2366 2393 7.307632 CGATATTGCTGACCAGGAGAAAATTAG 60.308 40.741 0.00 0.00 0.00 1.73
2410 2438 3.120546 ACTGCGATTTCAAGAACACATCG 60.121 43.478 9.73 9.73 39.78 3.84
2423 2451 2.505819 AGGTCCAGGATAACTGCGATTT 59.494 45.455 0.00 0.00 46.14 2.17
2461 2489 3.873026 CTCATCCGGGATCAGGCGC 62.873 68.421 6.55 0.00 0.00 6.53
2463 2491 2.746359 CCTCATCCGGGATCAGGC 59.254 66.667 14.47 0.00 0.00 4.85
2569 2604 8.782339 AAAATGAAAAGAAAATAGGCAGGATG 57.218 30.769 0.00 0.00 40.87 3.51
2594 2629 5.065988 CCACACGAAAGGAAAGAAGAAAAGA 59.934 40.000 0.00 0.00 0.00 2.52
2662 2700 3.573967 CCTTTTTAGAAAGAAGGCCTGCA 59.426 43.478 15.05 0.00 44.03 4.41
2683 2721 6.292150 ACTTCGAAGATCCAGGATAATTTCC 58.708 40.000 31.08 0.00 40.32 3.13
2702 2740 4.932200 AGACAGAAAAATGCCTAGACTTCG 59.068 41.667 0.00 0.00 0.00 3.79
2763 2801 6.849085 TTTCTGCTTCCCAAAATATAGCAA 57.151 33.333 0.00 0.00 40.90 3.91
2783 2821 4.382362 CCCAAGCTCTCCCAAATGATTTTC 60.382 45.833 0.00 0.00 0.00 2.29
2801 2839 3.691342 TCCGAGCCACGACCCAAG 61.691 66.667 2.48 0.00 45.77 3.61
2802 2840 3.998672 GTCCGAGCCACGACCCAA 61.999 66.667 2.48 0.00 45.77 4.12
2803 2841 4.988716 AGTCCGAGCCACGACCCA 62.989 66.667 2.48 0.00 45.77 4.51
2804 2842 3.644399 GAAGTCCGAGCCACGACCC 62.644 68.421 2.48 0.00 45.77 4.46
2805 2843 2.126031 GAAGTCCGAGCCACGACC 60.126 66.667 2.48 0.00 45.77 4.79
2806 2844 2.504244 CGAAGTCCGAGCCACGAC 60.504 66.667 2.48 0.00 45.77 4.34
2807 2845 3.744719 CCGAAGTCCGAGCCACGA 61.745 66.667 2.48 0.00 45.77 4.35
2808 2846 2.594119 CTACCGAAGTCCGAGCCACG 62.594 65.000 0.00 0.00 41.76 4.94
2809 2847 1.139095 CTACCGAAGTCCGAGCCAC 59.861 63.158 0.00 0.00 41.76 5.01
2810 2848 1.303888 ACTACCGAAGTCCGAGCCA 60.304 57.895 0.00 0.00 41.76 4.75
2811 2849 3.600843 ACTACCGAAGTCCGAGCC 58.399 61.111 0.00 0.00 41.76 4.70
2818 2856 2.022934 GGAAGATCCGACTACCGAAGT 58.977 52.381 0.00 0.00 42.80 3.01
2819 2857 1.337387 GGGAAGATCCGACTACCGAAG 59.663 57.143 0.00 0.00 41.76 3.79
2820 2858 1.341285 TGGGAAGATCCGACTACCGAA 60.341 52.381 0.00 0.00 41.76 4.30
2821 2859 0.256752 TGGGAAGATCCGACTACCGA 59.743 55.000 0.00 0.00 41.76 4.69
2822 2860 0.669077 CTGGGAAGATCCGACTACCG 59.331 60.000 0.00 0.00 37.43 4.02
2823 2861 0.389757 GCTGGGAAGATCCGACTACC 59.610 60.000 0.00 0.00 37.43 3.18
2824 2862 0.030908 CGCTGGGAAGATCCGACTAC 59.969 60.000 0.00 0.00 37.43 2.73
2825 2863 0.395311 ACGCTGGGAAGATCCGACTA 60.395 55.000 0.00 0.00 37.43 2.59
2826 2864 1.682684 ACGCTGGGAAGATCCGACT 60.683 57.895 0.00 0.00 37.43 4.18
2827 2865 1.519455 CACGCTGGGAAGATCCGAC 60.519 63.158 0.00 0.00 37.43 4.79
2828 2866 1.945354 GACACGCTGGGAAGATCCGA 61.945 60.000 0.00 0.00 37.43 4.55
2829 2867 1.519455 GACACGCTGGGAAGATCCG 60.519 63.158 0.00 0.00 37.43 4.18
2830 2868 1.153349 GGACACGCTGGGAAGATCC 60.153 63.158 0.00 0.00 35.23 3.36
2831 2869 1.519455 CGGACACGCTGGGAAGATC 60.519 63.158 0.00 0.00 0.00 2.75
2832 2870 2.579201 CGGACACGCTGGGAAGAT 59.421 61.111 0.00 0.00 0.00 2.40
2833 2871 3.691342 CCGGACACGCTGGGAAGA 61.691 66.667 0.00 0.00 39.56 2.87
2842 2880 3.934391 GAGAAGCACCCCGGACACG 62.934 68.421 0.73 0.00 40.55 4.49
2843 2881 2.047179 GAGAAGCACCCCGGACAC 60.047 66.667 0.73 0.00 0.00 3.67
2844 2882 3.319198 GGAGAAGCACCCCGGACA 61.319 66.667 0.73 0.00 0.00 4.02
2845 2883 4.452733 CGGAGAAGCACCCCGGAC 62.453 72.222 0.73 0.00 39.59 4.79
2847 2885 4.760047 CACGGAGAAGCACCCCGG 62.760 72.222 8.44 0.00 46.83 5.73
2849 2887 4.410400 CCCACGGAGAAGCACCCC 62.410 72.222 0.00 0.00 0.00 4.95
2850 2888 3.192103 AACCCACGGAGAAGCACCC 62.192 63.158 0.00 0.00 0.00 4.61
2851 2889 1.966451 CAACCCACGGAGAAGCACC 60.966 63.158 0.00 0.00 0.00 5.01
2852 2890 2.617274 GCAACCCACGGAGAAGCAC 61.617 63.158 0.00 0.00 0.00 4.40
2853 2891 2.281484 GCAACCCACGGAGAAGCA 60.281 61.111 0.00 0.00 0.00 3.91
2854 2892 2.180159 TAGGCAACCCACGGAGAAGC 62.180 60.000 0.00 0.00 37.17 3.86
2855 2893 0.108138 CTAGGCAACCCACGGAGAAG 60.108 60.000 0.00 0.00 37.17 2.85
2856 2894 0.834687 ACTAGGCAACCCACGGAGAA 60.835 55.000 0.00 0.00 37.17 2.87
2857 2895 0.834687 AACTAGGCAACCCACGGAGA 60.835 55.000 0.00 0.00 37.17 3.71
2858 2896 0.673644 CAACTAGGCAACCCACGGAG 60.674 60.000 0.00 0.00 37.17 4.63
2859 2897 1.373435 CAACTAGGCAACCCACGGA 59.627 57.895 0.00 0.00 37.17 4.69
2860 2898 2.332654 GCAACTAGGCAACCCACGG 61.333 63.158 0.00 0.00 37.17 4.94
2861 2899 0.889186 AAGCAACTAGGCAACCCACG 60.889 55.000 0.00 0.00 35.83 4.94
2862 2900 1.000274 CAAAGCAACTAGGCAACCCAC 60.000 52.381 0.00 0.00 35.83 4.61
2863 2901 1.133637 TCAAAGCAACTAGGCAACCCA 60.134 47.619 0.00 0.00 35.83 4.51
2864 2902 1.616159 TCAAAGCAACTAGGCAACCC 58.384 50.000 0.00 0.00 35.83 4.11
2865 2903 3.726291 TTTCAAAGCAACTAGGCAACC 57.274 42.857 0.00 0.00 35.83 3.77
2866 2904 3.914364 CGATTTCAAAGCAACTAGGCAAC 59.086 43.478 0.00 0.00 35.83 4.17
2867 2905 3.057596 CCGATTTCAAAGCAACTAGGCAA 60.058 43.478 0.00 0.00 35.83 4.52
2868 2906 2.487762 CCGATTTCAAAGCAACTAGGCA 59.512 45.455 0.00 0.00 35.83 4.75
2869 2907 2.747446 TCCGATTTCAAAGCAACTAGGC 59.253 45.455 0.00 0.00 0.00 3.93
2870 2908 3.181506 GCTCCGATTTCAAAGCAACTAGG 60.182 47.826 0.00 0.00 34.86 3.02
2871 2909 3.686726 AGCTCCGATTTCAAAGCAACTAG 59.313 43.478 0.00 0.00 37.22 2.57
2872 2910 3.436704 CAGCTCCGATTTCAAAGCAACTA 59.563 43.478 0.00 0.00 37.22 2.24
2873 2911 2.227388 CAGCTCCGATTTCAAAGCAACT 59.773 45.455 0.00 0.00 37.22 3.16
2874 2912 2.589014 CAGCTCCGATTTCAAAGCAAC 58.411 47.619 0.00 0.00 37.22 4.17
2875 2913 1.068333 GCAGCTCCGATTTCAAAGCAA 60.068 47.619 0.00 0.00 37.22 3.91
2876 2914 0.523072 GCAGCTCCGATTTCAAAGCA 59.477 50.000 0.00 0.00 37.22 3.91
2877 2915 0.522076 CGCAGCTCCGATTTCAAAGC 60.522 55.000 0.00 0.00 34.95 3.51
2878 2916 0.097674 CCGCAGCTCCGATTTCAAAG 59.902 55.000 0.00 0.00 0.00 2.77
2879 2917 0.605319 ACCGCAGCTCCGATTTCAAA 60.605 50.000 0.00 0.00 0.00 2.69
2880 2918 1.003839 ACCGCAGCTCCGATTTCAA 60.004 52.632 0.00 0.00 0.00 2.69
2881 2919 1.741401 CACCGCAGCTCCGATTTCA 60.741 57.895 0.00 0.00 0.00 2.69
2882 2920 2.464459 CCACCGCAGCTCCGATTTC 61.464 63.158 0.00 0.00 0.00 2.17
2883 2921 2.436646 CCACCGCAGCTCCGATTT 60.437 61.111 0.00 0.00 0.00 2.17
2884 2922 3.376935 CTCCACCGCAGCTCCGATT 62.377 63.158 0.00 0.00 0.00 3.34
2885 2923 3.842923 CTCCACCGCAGCTCCGAT 61.843 66.667 0.00 0.00 0.00 4.18
2892 2930 4.803426 GGACTCGCTCCACCGCAG 62.803 72.222 0.00 0.00 39.21 5.18
2894 2932 4.803426 CTGGACTCGCTCCACCGC 62.803 72.222 0.00 0.00 44.99 5.68
2895 2933 4.135153 CCTGGACTCGCTCCACCG 62.135 72.222 0.00 0.00 44.99 4.94
2896 2934 2.997897 ACCTGGACTCGCTCCACC 60.998 66.667 0.00 0.00 44.99 4.61
2897 2935 2.262915 CACCTGGACTCGCTCCAC 59.737 66.667 0.00 0.00 44.99 4.02
2899 2937 2.997897 ACCACCTGGACTCGCTCC 60.998 66.667 0.00 0.00 39.97 4.70
2900 2938 2.262915 CACCACCTGGACTCGCTC 59.737 66.667 0.00 0.00 38.94 5.03
2901 2939 2.203640 TCACCACCTGGACTCGCT 60.204 61.111 0.00 0.00 38.94 4.93
2902 2940 2.048127 GTCACCACCTGGACTCGC 60.048 66.667 0.00 0.00 38.94 5.03
2903 2941 1.595993 ATCGTCACCACCTGGACTCG 61.596 60.000 0.00 0.10 38.94 4.18
2904 2942 0.108615 CATCGTCACCACCTGGACTC 60.109 60.000 0.00 0.00 38.94 3.36
2905 2943 0.541998 TCATCGTCACCACCTGGACT 60.542 55.000 0.00 0.00 38.94 3.85
2906 2944 0.389948 GTCATCGTCACCACCTGGAC 60.390 60.000 0.00 0.00 38.94 4.02
2907 2945 0.830023 TGTCATCGTCACCACCTGGA 60.830 55.000 0.00 0.00 38.94 3.86
2908 2946 0.250234 ATGTCATCGTCACCACCTGG 59.750 55.000 0.00 0.00 42.17 4.45
2909 2947 1.362768 CATGTCATCGTCACCACCTG 58.637 55.000 0.00 0.00 0.00 4.00
2910 2948 0.391661 GCATGTCATCGTCACCACCT 60.392 55.000 0.00 0.00 0.00 4.00
2911 2949 1.695893 CGCATGTCATCGTCACCACC 61.696 60.000 0.00 0.00 0.00 4.61
2912 2950 1.709760 CGCATGTCATCGTCACCAC 59.290 57.895 0.00 0.00 0.00 4.16
2913 2951 2.100031 GCGCATGTCATCGTCACCA 61.100 57.895 0.30 0.00 0.00 4.17
2914 2952 1.756375 GAGCGCATGTCATCGTCACC 61.756 60.000 11.47 0.00 0.00 4.02
2915 2953 1.633171 GAGCGCATGTCATCGTCAC 59.367 57.895 11.47 0.00 0.00 3.67
2916 2954 1.873572 CGAGCGCATGTCATCGTCA 60.874 57.895 11.47 0.00 0.00 4.35
2917 2955 2.580470 CCGAGCGCATGTCATCGTC 61.580 63.158 11.47 0.00 33.43 4.20
2918 2956 2.583319 CCGAGCGCATGTCATCGT 60.583 61.111 11.47 0.00 33.43 3.73
2919 2957 2.583319 ACCGAGCGCATGTCATCG 60.583 61.111 11.47 9.06 35.02 3.84
2920 2958 2.528743 CCACCGAGCGCATGTCATC 61.529 63.158 11.47 0.00 0.00 2.92
2921 2959 2.512286 CCACCGAGCGCATGTCAT 60.512 61.111 11.47 0.00 0.00 3.06
2922 2960 3.932580 GACCACCGAGCGCATGTCA 62.933 63.158 11.47 0.00 0.00 3.58
2923 2961 3.188786 GACCACCGAGCGCATGTC 61.189 66.667 11.47 2.61 0.00 3.06
2958 2996 1.000060 CCCGGGAAATATGCATGCTTG 60.000 52.381 18.48 0.00 0.00 4.01
2959 2997 1.331214 CCCGGGAAATATGCATGCTT 58.669 50.000 18.48 15.55 0.00 3.91
2960 2998 0.185901 ACCCGGGAAATATGCATGCT 59.814 50.000 32.02 7.07 0.00 3.79
2961 2999 0.314935 CACCCGGGAAATATGCATGC 59.685 55.000 32.02 11.82 0.00 4.06
2962 3000 1.979855 TCACCCGGGAAATATGCATG 58.020 50.000 32.02 12.06 0.00 4.06
2963 3001 2.517959 CATCACCCGGGAAATATGCAT 58.482 47.619 32.02 3.79 0.00 3.96
2964 3002 1.979855 CATCACCCGGGAAATATGCA 58.020 50.000 32.02 5.08 0.00 3.96
2965 3003 0.598065 GCATCACCCGGGAAATATGC 59.402 55.000 32.02 28.17 33.69 3.14
2966 3004 1.202927 AGGCATCACCCGGGAAATATG 60.203 52.381 32.02 23.24 40.58 1.78
2967 3005 1.149101 AGGCATCACCCGGGAAATAT 58.851 50.000 32.02 11.72 40.58 1.28
2968 3006 0.182537 CAGGCATCACCCGGGAAATA 59.817 55.000 32.02 9.61 40.58 1.40
2969 3007 1.076777 CAGGCATCACCCGGGAAAT 60.077 57.895 32.02 17.34 40.58 2.17
2970 3008 2.354729 CAGGCATCACCCGGGAAA 59.645 61.111 32.02 15.54 40.58 3.13
2971 3009 2.933287 ACAGGCATCACCCGGGAA 60.933 61.111 32.02 15.97 40.58 3.97
2972 3010 3.399181 GACAGGCATCACCCGGGA 61.399 66.667 32.02 5.69 40.58 5.14
2973 3011 4.838152 CGACAGGCATCACCCGGG 62.838 72.222 22.25 22.25 40.58 5.73
2974 3012 4.082523 ACGACAGGCATCACCCGG 62.083 66.667 0.00 0.00 40.58 5.73
2975 3013 2.509336 GACGACAGGCATCACCCG 60.509 66.667 0.00 0.00 40.58 5.28
2976 3014 0.605319 TTTGACGACAGGCATCACCC 60.605 55.000 0.00 0.00 40.58 4.61
2977 3015 0.798776 CTTTGACGACAGGCATCACC 59.201 55.000 0.00 0.00 33.83 4.02
2978 3016 1.461127 GACTTTGACGACAGGCATCAC 59.539 52.381 0.00 0.00 33.83 3.06
2979 3017 1.795768 GACTTTGACGACAGGCATCA 58.204 50.000 0.00 0.00 33.83 3.07
2980 3018 0.716108 CGACTTTGACGACAGGCATC 59.284 55.000 0.00 0.00 33.83 3.91
2981 3019 0.670546 CCGACTTTGACGACAGGCAT 60.671 55.000 0.00 0.00 33.83 4.40
2982 3020 1.300620 CCGACTTTGACGACAGGCA 60.301 57.895 0.00 0.00 0.00 4.75
2983 3021 1.006571 TCCGACTTTGACGACAGGC 60.007 57.895 0.00 0.00 0.00 4.85
2984 3022 0.596577 TCTCCGACTTTGACGACAGG 59.403 55.000 0.00 0.00 0.00 4.00
2985 3023 2.638556 ATCTCCGACTTTGACGACAG 57.361 50.000 0.00 0.00 0.00 3.51
2986 3024 3.692593 TGATATCTCCGACTTTGACGACA 59.307 43.478 3.98 0.00 0.00 4.35
2987 3025 4.201930 ACTGATATCTCCGACTTTGACGAC 60.202 45.833 3.98 0.00 0.00 4.34
2988 3026 3.945921 ACTGATATCTCCGACTTTGACGA 59.054 43.478 3.98 0.00 0.00 4.20
2989 3027 4.294416 ACTGATATCTCCGACTTTGACG 57.706 45.455 3.98 0.00 0.00 4.35
2990 3028 5.411781 ACAACTGATATCTCCGACTTTGAC 58.588 41.667 3.98 0.00 0.00 3.18
2991 3029 5.661056 ACAACTGATATCTCCGACTTTGA 57.339 39.130 3.98 0.00 0.00 2.69
2992 3030 5.869344 TGAACAACTGATATCTCCGACTTTG 59.131 40.000 3.98 0.37 0.00 2.77
2993 3031 6.037786 TGAACAACTGATATCTCCGACTTT 57.962 37.500 3.98 0.00 0.00 2.66
2994 3032 5.661056 TGAACAACTGATATCTCCGACTT 57.339 39.130 3.98 0.00 0.00 3.01
2995 3033 5.595885 CATGAACAACTGATATCTCCGACT 58.404 41.667 3.98 0.00 0.00 4.18
2996 3034 4.210120 GCATGAACAACTGATATCTCCGAC 59.790 45.833 3.98 0.00 0.00 4.79
2997 3035 4.371786 GCATGAACAACTGATATCTCCGA 58.628 43.478 3.98 0.00 0.00 4.55
2998 3036 3.183172 CGCATGAACAACTGATATCTCCG 59.817 47.826 3.98 0.00 0.00 4.63
2999 3037 4.025396 CACGCATGAACAACTGATATCTCC 60.025 45.833 3.98 0.00 0.00 3.71
3000 3038 4.568359 ACACGCATGAACAACTGATATCTC 59.432 41.667 3.98 0.00 0.00 2.75
3001 3039 4.330894 CACACGCATGAACAACTGATATCT 59.669 41.667 3.98 0.00 0.00 1.98
3002 3040 4.494690 CCACACGCATGAACAACTGATATC 60.495 45.833 0.00 0.00 0.00 1.63
3003 3041 3.374988 CCACACGCATGAACAACTGATAT 59.625 43.478 0.00 0.00 0.00 1.63
3004 3042 2.741517 CCACACGCATGAACAACTGATA 59.258 45.455 0.00 0.00 0.00 2.15
3005 3043 1.536766 CCACACGCATGAACAACTGAT 59.463 47.619 0.00 0.00 0.00 2.90
3006 3044 0.943673 CCACACGCATGAACAACTGA 59.056 50.000 0.00 0.00 0.00 3.41
3007 3045 0.661187 GCCACACGCATGAACAACTG 60.661 55.000 0.00 0.00 37.47 3.16
3008 3046 1.654220 GCCACACGCATGAACAACT 59.346 52.632 0.00 0.00 37.47 3.16
3009 3047 1.371635 GGCCACACGCATGAACAAC 60.372 57.895 0.00 0.00 40.31 3.32
3010 3048 1.177895 ATGGCCACACGCATGAACAA 61.178 50.000 8.16 0.00 40.31 2.83
3011 3049 1.585267 GATGGCCACACGCATGAACA 61.585 55.000 8.16 0.00 40.31 3.18
3012 3050 1.137404 GATGGCCACACGCATGAAC 59.863 57.895 8.16 0.00 40.31 3.18
3013 3051 1.002257 AGATGGCCACACGCATGAA 60.002 52.632 8.16 0.00 40.31 2.57
3014 3052 1.746239 CAGATGGCCACACGCATGA 60.746 57.895 8.16 0.00 40.31 3.07
3015 3053 1.588824 AACAGATGGCCACACGCATG 61.589 55.000 8.16 3.15 40.31 4.06
3016 3054 1.303561 AACAGATGGCCACACGCAT 60.304 52.632 8.16 0.00 40.31 4.73
3017 3055 2.112928 AACAGATGGCCACACGCA 59.887 55.556 8.16 0.00 40.31 5.24
3018 3056 2.562912 CAACAGATGGCCACACGC 59.437 61.111 8.16 0.00 0.00 5.34
3019 3057 3.266964 CCAACAGATGGCCACACG 58.733 61.111 8.16 0.47 43.80 4.49
3043 3081 0.390603 TGGAACATAAGCCACGACGG 60.391 55.000 0.00 0.00 38.11 4.79
3044 3082 3.131326 TGGAACATAAGCCACGACG 57.869 52.632 0.00 0.00 0.00 5.12
3057 3095 2.033448 TGGCCACCGACATGGAAC 59.967 61.111 0.00 0.00 43.02 3.62
3058 3096 2.350895 CTGGCCACCGACATGGAA 59.649 61.111 0.00 0.00 43.02 3.53
3059 3097 3.716195 CCTGGCCACCGACATGGA 61.716 66.667 0.00 0.00 43.02 3.41
3060 3098 3.567579 AACCTGGCCACCGACATGG 62.568 63.158 0.00 1.37 46.41 3.66
3061 3099 2.034066 AACCTGGCCACCGACATG 59.966 61.111 0.00 0.00 0.00 3.21
3062 3100 2.034066 CAACCTGGCCACCGACAT 59.966 61.111 0.00 0.00 0.00 3.06
3063 3101 4.263572 CCAACCTGGCCACCGACA 62.264 66.667 0.00 0.00 0.00 4.35
3073 3111 3.297620 GCACCACCAGCCAACCTG 61.298 66.667 0.00 0.00 41.41 4.00
3087 3125 1.767759 AGCCATAAAGACATGGGCAC 58.232 50.000 9.19 0.00 44.89 5.01
3088 3126 2.101783 CAAGCCATAAAGACATGGGCA 58.898 47.619 9.19 0.00 44.89 5.36
3089 3127 1.410153 CCAAGCCATAAAGACATGGGC 59.590 52.381 0.00 0.00 44.89 5.36
3090 3128 2.034124 CCCAAGCCATAAAGACATGGG 58.966 52.381 0.00 0.00 44.89 4.00
3092 3130 3.511146 ACAACCCAAGCCATAAAGACATG 59.489 43.478 0.00 0.00 0.00 3.21
3093 3131 3.511146 CACAACCCAAGCCATAAAGACAT 59.489 43.478 0.00 0.00 0.00 3.06
3094 3132 2.890311 CACAACCCAAGCCATAAAGACA 59.110 45.455 0.00 0.00 0.00 3.41
3095 3133 2.890945 ACACAACCCAAGCCATAAAGAC 59.109 45.455 0.00 0.00 0.00 3.01
3096 3134 3.153919 GACACAACCCAAGCCATAAAGA 58.846 45.455 0.00 0.00 0.00 2.52
3097 3135 2.095263 CGACACAACCCAAGCCATAAAG 60.095 50.000 0.00 0.00 0.00 1.85
3098 3136 1.883275 CGACACAACCCAAGCCATAAA 59.117 47.619 0.00 0.00 0.00 1.40
3099 3137 1.529226 CGACACAACCCAAGCCATAA 58.471 50.000 0.00 0.00 0.00 1.90
3100 3138 0.322098 CCGACACAACCCAAGCCATA 60.322 55.000 0.00 0.00 0.00 2.74
3101 3139 1.603455 CCGACACAACCCAAGCCAT 60.603 57.895 0.00 0.00 0.00 4.40
3102 3140 2.203280 CCGACACAACCCAAGCCA 60.203 61.111 0.00 0.00 0.00 4.75
3103 3141 1.388837 AAACCGACACAACCCAAGCC 61.389 55.000 0.00 0.00 0.00 4.35
3104 3142 0.458260 AAAACCGACACAACCCAAGC 59.542 50.000 0.00 0.00 0.00 4.01
3105 3143 2.287368 GCTAAAACCGACACAACCCAAG 60.287 50.000 0.00 0.00 0.00 3.61
3106 3144 1.677052 GCTAAAACCGACACAACCCAA 59.323 47.619 0.00 0.00 0.00 4.12
3107 3145 1.310904 GCTAAAACCGACACAACCCA 58.689 50.000 0.00 0.00 0.00 4.51
3108 3146 0.594602 GGCTAAAACCGACACAACCC 59.405 55.000 0.00 0.00 0.00 4.11
3109 3147 0.594602 GGGCTAAAACCGACACAACC 59.405 55.000 0.00 0.00 0.00 3.77
3118 3156 1.814394 ACGGAAAATCGGGCTAAAACC 59.186 47.619 0.00 0.00 0.00 3.27
3119 3157 2.485038 TGACGGAAAATCGGGCTAAAAC 59.515 45.455 0.00 0.00 0.00 2.43
3120 3158 2.780714 TGACGGAAAATCGGGCTAAAA 58.219 42.857 0.00 0.00 0.00 1.52
3121 3159 2.476126 TGACGGAAAATCGGGCTAAA 57.524 45.000 0.00 0.00 0.00 1.85
3122 3160 2.476126 TTGACGGAAAATCGGGCTAA 57.524 45.000 0.00 0.00 0.00 3.09
3123 3161 2.702592 ATTGACGGAAAATCGGGCTA 57.297 45.000 0.00 0.00 0.00 3.93
3124 3162 1.834188 AATTGACGGAAAATCGGGCT 58.166 45.000 0.00 0.00 0.00 5.19
3125 3163 3.431856 GTTAATTGACGGAAAATCGGGC 58.568 45.455 0.00 0.00 0.00 6.13
3126 3164 3.440872 TGGTTAATTGACGGAAAATCGGG 59.559 43.478 0.00 0.00 0.00 5.14
3127 3165 4.438200 CCTGGTTAATTGACGGAAAATCGG 60.438 45.833 0.00 0.00 0.00 4.18
3128 3166 4.658071 CCTGGTTAATTGACGGAAAATCG 58.342 43.478 0.00 0.00 0.00 3.34
3129 3167 4.082463 TGCCTGGTTAATTGACGGAAAATC 60.082 41.667 0.00 0.00 0.00 2.17
3130 3168 3.829601 TGCCTGGTTAATTGACGGAAAAT 59.170 39.130 0.00 0.00 0.00 1.82
3131 3169 3.223435 TGCCTGGTTAATTGACGGAAAA 58.777 40.909 0.00 0.00 0.00 2.29
3132 3170 2.865079 TGCCTGGTTAATTGACGGAAA 58.135 42.857 0.00 0.00 0.00 3.13
3133 3171 2.570415 TGCCTGGTTAATTGACGGAA 57.430 45.000 0.00 0.00 0.00 4.30
3134 3172 2.570415 TTGCCTGGTTAATTGACGGA 57.430 45.000 0.00 0.00 0.00 4.69
3135 3173 3.428862 GGAATTGCCTGGTTAATTGACGG 60.429 47.826 13.33 0.00 0.00 4.79
3136 3174 3.192422 TGGAATTGCCTGGTTAATTGACG 59.808 43.478 13.33 0.00 37.63 4.35
3137 3175 4.799564 TGGAATTGCCTGGTTAATTGAC 57.200 40.909 13.33 0.00 37.63 3.18
3138 3176 5.815233 TTTGGAATTGCCTGGTTAATTGA 57.185 34.783 13.33 1.44 37.63 2.57
3139 3177 6.880529 AGAATTTGGAATTGCCTGGTTAATTG 59.119 34.615 13.33 0.00 37.63 2.32
3140 3178 7.019656 AGAATTTGGAATTGCCTGGTTAATT 57.980 32.000 9.72 9.72 37.63 1.40
3141 3179 6.625532 AGAATTTGGAATTGCCTGGTTAAT 57.374 33.333 0.00 0.00 37.63 1.40
3142 3180 6.269769 AGAAGAATTTGGAATTGCCTGGTTAA 59.730 34.615 0.00 0.00 37.63 2.01
3143 3181 5.779771 AGAAGAATTTGGAATTGCCTGGTTA 59.220 36.000 0.00 0.00 37.63 2.85
3144 3182 4.594491 AGAAGAATTTGGAATTGCCTGGTT 59.406 37.500 0.00 0.00 37.63 3.67
3145 3183 4.162651 AGAAGAATTTGGAATTGCCTGGT 58.837 39.130 0.00 0.00 37.63 4.00
3146 3184 4.813750 AGAAGAATTTGGAATTGCCTGG 57.186 40.909 0.00 0.00 37.63 4.45
3147 3185 8.036575 TGATTAAGAAGAATTTGGAATTGCCTG 58.963 33.333 0.00 0.00 37.63 4.85
3148 3186 8.137745 TGATTAAGAAGAATTTGGAATTGCCT 57.862 30.769 0.00 0.00 37.63 4.75
3149 3187 8.776376 TTGATTAAGAAGAATTTGGAATTGCC 57.224 30.769 0.00 0.00 37.10 4.52
3159 3197 9.947433 TGCCATTTTCATTGATTAAGAAGAATT 57.053 25.926 0.00 0.00 0.00 2.17
3160 3198 9.595823 CTGCCATTTTCATTGATTAAGAAGAAT 57.404 29.630 0.00 0.00 0.00 2.40
3161 3199 8.036575 CCTGCCATTTTCATTGATTAAGAAGAA 58.963 33.333 0.00 0.00 0.00 2.52
3162 3200 7.178983 ACCTGCCATTTTCATTGATTAAGAAGA 59.821 33.333 0.00 0.00 0.00 2.87
3163 3201 7.325694 ACCTGCCATTTTCATTGATTAAGAAG 58.674 34.615 0.00 0.00 0.00 2.85
3164 3202 7.178983 AGACCTGCCATTTTCATTGATTAAGAA 59.821 33.333 0.00 0.00 0.00 2.52
3165 3203 6.664816 AGACCTGCCATTTTCATTGATTAAGA 59.335 34.615 0.00 0.00 0.00 2.10
3166 3204 6.870769 AGACCTGCCATTTTCATTGATTAAG 58.129 36.000 0.00 0.00 0.00 1.85
3167 3205 6.855763 AGACCTGCCATTTTCATTGATTAA 57.144 33.333 0.00 0.00 0.00 1.40
3168 3206 6.855763 AAGACCTGCCATTTTCATTGATTA 57.144 33.333 0.00 0.00 0.00 1.75
3169 3207 5.750352 AAGACCTGCCATTTTCATTGATT 57.250 34.783 0.00 0.00 0.00 2.57
3170 3208 5.750352 AAAGACCTGCCATTTTCATTGAT 57.250 34.783 0.00 0.00 0.00 2.57
3171 3209 5.299148 CAAAAGACCTGCCATTTTCATTGA 58.701 37.500 0.00 0.00 0.00 2.57
3172 3210 4.083696 GCAAAAGACCTGCCATTTTCATTG 60.084 41.667 0.00 0.00 33.51 2.82
3173 3211 4.067192 GCAAAAGACCTGCCATTTTCATT 58.933 39.130 0.00 0.00 33.51 2.57
3174 3212 3.325716 AGCAAAAGACCTGCCATTTTCAT 59.674 39.130 0.00 0.00 40.86 2.57
3175 3213 2.699846 AGCAAAAGACCTGCCATTTTCA 59.300 40.909 0.00 0.00 40.86 2.69
3176 3214 3.391506 AGCAAAAGACCTGCCATTTTC 57.608 42.857 0.00 0.00 40.86 2.29
3177 3215 3.843893 AAGCAAAAGACCTGCCATTTT 57.156 38.095 0.00 0.00 40.86 1.82
3178 3216 3.118298 ACAAAGCAAAAGACCTGCCATTT 60.118 39.130 0.00 0.00 40.86 2.32
3179 3217 2.435437 ACAAAGCAAAAGACCTGCCATT 59.565 40.909 0.00 0.00 40.86 3.16
3180 3218 2.041701 ACAAAGCAAAAGACCTGCCAT 58.958 42.857 0.00 0.00 40.86 4.40
3181 3219 1.484038 ACAAAGCAAAAGACCTGCCA 58.516 45.000 0.00 0.00 40.86 4.92
3182 3220 2.602257 AACAAAGCAAAAGACCTGCC 57.398 45.000 0.00 0.00 40.86 4.85
3183 3221 6.415798 TTTTAAACAAAGCAAAAGACCTGC 57.584 33.333 0.00 0.00 40.24 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.