Multiple sequence alignment - TraesCS3D01G333900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G333900 chr3D 100.000 4913 0 0 1 4913 445842857 445837945 0.000000e+00 9073.0
1 TraesCS3D01G333900 chr3B 90.512 1075 67 18 3578 4634 584740762 584739705 0.000000e+00 1387.0
2 TraesCS3D01G333900 chr3B 85.833 1207 94 39 29 1218 584744701 584743555 0.000000e+00 1210.0
3 TraesCS3D01G333900 chr3B 92.778 817 35 11 2755 3570 584741714 584740921 0.000000e+00 1160.0
4 TraesCS3D01G333900 chr3B 93.966 696 33 4 1219 1914 584743440 584742754 0.000000e+00 1044.0
5 TraesCS3D01G333900 chr3B 91.346 520 20 8 2064 2558 584742529 584742010 0.000000e+00 688.0
6 TraesCS3D01G333900 chr3B 83.744 406 40 12 2770 3159 573312152 573312547 1.300000e-95 361.0
7 TraesCS3D01G333900 chr3B 95.395 152 7 0 1914 2065 584742713 584742562 4.910000e-60 243.0
8 TraesCS3D01G333900 chr3B 90.647 139 11 2 2580 2718 584741934 584741798 3.020000e-42 183.0
9 TraesCS3D01G333900 chr3B 83.871 124 20 0 397 520 751817286 751817409 8.640000e-23 119.0
10 TraesCS3D01G333900 chr3A 94.132 818 35 7 2755 3570 587587329 587586523 0.000000e+00 1232.0
11 TraesCS3D01G333900 chr3A 91.304 713 48 4 3573 4274 587586432 587585723 0.000000e+00 961.0
12 TraesCS3D01G333900 chr3A 91.261 698 38 12 1219 1914 587589042 587588366 0.000000e+00 929.0
13 TraesCS3D01G333900 chr3A 93.686 586 19 8 642 1218 587589729 587589153 0.000000e+00 861.0
14 TraesCS3D01G333900 chr3A 92.555 497 30 4 1 497 587601421 587600932 0.000000e+00 706.0
15 TraesCS3D01G333900 chr3A 91.329 519 20 9 2064 2558 587588140 587587623 0.000000e+00 686.0
16 TraesCS3D01G333900 chr3A 90.714 280 22 3 4358 4634 587585690 587585412 2.160000e-98 370.0
17 TraesCS3D01G333900 chr3A 93.243 148 10 0 1914 2061 587588323 587588176 8.280000e-53 219.0
18 TraesCS3D01G333900 chr3A 94.574 129 7 0 2580 2708 587587547 587587419 3.000000e-47 200.0
19 TraesCS3D01G333900 chr3A 100.000 32 0 0 593 624 587589756 587589725 5.310000e-05 60.2
20 TraesCS3D01G333900 chr4B 83.498 406 41 11 2770 3159 135894608 135895003 6.050000e-94 355.0
21 TraesCS3D01G333900 chrUn 88.991 109 12 0 397 505 103378390 103378498 8.580000e-28 135.0
22 TraesCS3D01G333900 chr1D 85.833 120 14 3 388 506 31637287 31637404 1.860000e-24 124.0
23 TraesCS3D01G333900 chr1D 100.000 31 0 0 4678 4708 47714959 47714929 1.910000e-04 58.4
24 TraesCS3D01G333900 chr1B 86.087 115 13 2 397 511 67537443 67537554 2.400000e-23 121.0
25 TraesCS3D01G333900 chr7D 84.127 126 17 3 388 512 492847725 492847848 8.640000e-23 119.0
26 TraesCS3D01G333900 chr7D 83.186 113 18 1 2594 2706 96457607 96457496 8.700000e-18 102.0
27 TraesCS3D01G333900 chr7D 91.228 57 5 0 62 118 178963101 178963157 1.470000e-10 78.7
28 TraesCS3D01G333900 chr7D 96.774 31 1 0 4678 4708 485837310 485837340 9.000000e-03 52.8
29 TraesCS3D01G333900 chr4D 84.956 113 16 1 400 512 82022149 82022038 4.020000e-21 113.0
30 TraesCS3D01G333900 chr2B 84.956 113 16 1 400 511 73611211 73611099 4.020000e-21 113.0
31 TraesCS3D01G333900 chr2B 100.000 28 0 0 4635 4662 744185820 744185847 9.000000e-03 52.8
32 TraesCS3D01G333900 chr7A 82.031 128 20 3 2580 2706 99648796 99648671 6.730000e-19 106.0
33 TraesCS3D01G333900 chr7A 89.394 66 7 0 4676 4741 24937591 24937526 3.150000e-12 84.2
34 TraesCS3D01G333900 chr4A 82.143 112 9 1 4631 4731 650387375 650387264 8.760000e-13 86.1
35 TraesCS3D01G333900 chr4A 100.000 28 0 0 4678 4705 508007441 508007468 9.000000e-03 52.8
36 TraesCS3D01G333900 chr6B 80.328 122 12 6 4631 4741 210961657 210961777 1.130000e-11 82.4
37 TraesCS3D01G333900 chr5D 83.158 95 8 6 585 673 35675237 35675145 4.080000e-11 80.5
38 TraesCS3D01G333900 chr5D 94.286 35 2 0 4678 4712 3756127 3756161 2.000000e-03 54.7
39 TraesCS3D01G333900 chr7B 79.508 122 13 6 4631 4741 190061951 190061831 5.270000e-10 76.8
40 TraesCS3D01G333900 chr5A 96.875 32 1 0 4681 4712 554754174 554754143 2.000000e-03 54.7
41 TraesCS3D01G333900 chr5A 96.774 31 1 0 4678 4708 566783585 566783615 9.000000e-03 52.8
42 TraesCS3D01G333900 chr6D 94.286 35 0 1 4635 4669 12995041 12995009 9.000000e-03 52.8
43 TraesCS3D01G333900 chr2A 96.774 31 1 0 4678 4708 715299593 715299623 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G333900 chr3D 445837945 445842857 4912 True 9073.000000 9073 100.000000 1 4913 1 chr3D.!!$R1 4912
1 TraesCS3D01G333900 chr3B 584739705 584744701 4996 True 845.000000 1387 91.496714 29 4634 7 chr3B.!!$R1 4605
2 TraesCS3D01G333900 chr3A 587585412 587589756 4344 True 613.133333 1232 93.360333 593 4634 9 chr3A.!!$R2 4041

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
38 39 0.037590 TTAGTTTGCCTCCGCATGGT 59.962 50.000 0.00 0.0 46.67 3.55 F
146 147 0.625683 AATCACCAGGGGGAGAGCAT 60.626 55.000 0.00 0.0 37.20 3.79 F
194 196 0.898326 CCCAAGGGGCCAAAGTACAC 60.898 60.000 4.39 0.0 35.35 2.90 F
364 368 0.937304 GCATTGCGCGAGATTCCTAA 59.063 50.000 12.10 0.0 0.00 2.69 F
1167 1187 1.047002 CCTTGGGTTCATTGGTTGCA 58.953 50.000 0.00 0.0 0.00 4.08 F
1686 1825 0.523072 AGTGCTATTGCCTGTTTGCG 59.477 50.000 0.00 0.0 38.71 4.85 F
3196 3549 1.002544 GGCAGCCTTTACTGTCTCTGT 59.997 52.381 3.29 0.0 39.25 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1167 1187 0.108992 TCGCAAATAACCGAGCTCGT 60.109 50.000 32.41 19.0 37.74 4.18 R
1484 1622 1.202256 CGAGATAGTAGCAACCACGCA 60.202 52.381 0.00 0.0 0.00 5.24 R
1674 1813 1.216122 GCAATTTCGCAAACAGGCAA 58.784 45.000 0.00 0.0 0.00 4.52 R
1676 1815 1.291184 GGGCAATTTCGCAAACAGGC 61.291 55.000 0.00 0.0 0.00 4.85 R
2783 3134 1.078918 TCCGTGATGCAAGAGCTGG 60.079 57.895 0.00 0.0 42.74 4.85 R
3390 3746 0.107752 TCGTTAGCATCAGCATGGCA 60.108 50.000 0.00 0.0 45.49 4.92 R
4547 5071 0.031857 TGGCGCATCCAGTTGTTTTG 59.968 50.000 10.83 0.0 40.72 2.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.196341 TCAACTTCACGTGTCAGATTAGT 57.804 39.130 16.51 6.09 0.00 2.24
24 25 5.597806 TCAACTTCACGTGTCAGATTAGTT 58.402 37.500 16.51 11.15 0.00 2.24
25 26 6.046593 TCAACTTCACGTGTCAGATTAGTTT 58.953 36.000 16.51 0.00 0.00 2.66
26 27 5.907197 ACTTCACGTGTCAGATTAGTTTG 57.093 39.130 16.51 0.00 0.00 2.93
27 28 4.211374 ACTTCACGTGTCAGATTAGTTTGC 59.789 41.667 16.51 0.00 0.00 3.68
28 29 3.064207 TCACGTGTCAGATTAGTTTGCC 58.936 45.455 16.51 0.00 0.00 4.52
29 30 3.067106 CACGTGTCAGATTAGTTTGCCT 58.933 45.455 7.58 0.00 0.00 4.75
30 31 3.123621 CACGTGTCAGATTAGTTTGCCTC 59.876 47.826 7.58 0.00 0.00 4.70
31 32 2.673368 CGTGTCAGATTAGTTTGCCTCC 59.327 50.000 0.00 0.00 0.00 4.30
32 33 2.673368 GTGTCAGATTAGTTTGCCTCCG 59.327 50.000 0.00 0.00 0.00 4.63
33 34 1.666189 GTCAGATTAGTTTGCCTCCGC 59.334 52.381 0.00 0.00 0.00 5.54
34 35 1.277842 TCAGATTAGTTTGCCTCCGCA 59.722 47.619 0.00 0.00 45.49 5.69
35 36 2.092968 TCAGATTAGTTTGCCTCCGCAT 60.093 45.455 0.00 0.00 46.67 4.73
36 37 2.032550 CAGATTAGTTTGCCTCCGCATG 59.967 50.000 0.00 0.00 46.67 4.06
37 38 1.334869 GATTAGTTTGCCTCCGCATGG 59.665 52.381 0.00 0.00 46.67 3.66
38 39 0.037590 TTAGTTTGCCTCCGCATGGT 59.962 50.000 0.00 0.00 46.67 3.55
39 40 0.906066 TAGTTTGCCTCCGCATGGTA 59.094 50.000 0.00 0.00 46.67 3.25
48 49 3.861840 CCTCCGCATGGTATAACCTATG 58.138 50.000 0.00 1.79 39.58 2.23
93 94 9.381038 ACCTATTAGTATGTGATGTGAACCTAT 57.619 33.333 0.00 0.00 0.00 2.57
94 95 9.645059 CCTATTAGTATGTGATGTGAACCTATG 57.355 37.037 0.00 0.00 0.00 2.23
101 102 2.216898 GATGTGAACCTATGCTCCTGC 58.783 52.381 0.00 0.00 40.20 4.85
114 115 1.470494 GCTCCTGCAAACTAAAGCTCC 59.530 52.381 0.00 0.00 39.41 4.70
116 117 3.350833 CTCCTGCAAACTAAAGCTCCAT 58.649 45.455 0.00 0.00 0.00 3.41
120 121 4.219288 CCTGCAAACTAAAGCTCCATTCTT 59.781 41.667 0.00 0.00 0.00 2.52
121 122 5.279156 CCTGCAAACTAAAGCTCCATTCTTT 60.279 40.000 0.00 0.00 37.50 2.52
122 123 6.160576 TGCAAACTAAAGCTCCATTCTTTT 57.839 33.333 0.00 0.00 35.58 2.27
134 135 6.267471 AGCTCCATTCTTTTTAACAATCACCA 59.733 34.615 0.00 0.00 0.00 4.17
140 141 3.905493 TTTTAACAATCACCAGGGGGA 57.095 42.857 0.00 0.00 38.05 4.81
141 142 3.449746 TTTAACAATCACCAGGGGGAG 57.550 47.619 0.00 0.00 38.05 4.30
142 143 2.352561 TAACAATCACCAGGGGGAGA 57.647 50.000 0.00 0.00 38.20 3.71
143 144 0.995024 AACAATCACCAGGGGGAGAG 59.005 55.000 0.00 0.00 37.20 3.20
144 145 1.225704 CAATCACCAGGGGGAGAGC 59.774 63.158 0.00 0.00 37.20 4.09
145 146 1.229951 AATCACCAGGGGGAGAGCA 60.230 57.895 0.00 0.00 37.20 4.26
146 147 0.625683 AATCACCAGGGGGAGAGCAT 60.626 55.000 0.00 0.00 37.20 3.79
149 150 2.003548 ACCAGGGGGAGAGCATTCC 61.004 63.158 0.00 0.00 38.05 3.01
177 179 8.691661 TCTGAATATATTACTCAAAAAGCCCC 57.308 34.615 0.00 0.00 0.00 5.80
194 196 0.898326 CCCAAGGGGCCAAAGTACAC 60.898 60.000 4.39 0.00 35.35 2.90
237 239 4.872691 AGAGGAACATGCGTCAAAGATAAG 59.127 41.667 0.00 0.00 0.00 1.73
239 241 3.938963 GGAACATGCGTCAAAGATAAGGA 59.061 43.478 0.00 0.00 0.00 3.36
241 243 3.535561 ACATGCGTCAAAGATAAGGAGG 58.464 45.455 0.00 0.00 0.00 4.30
245 247 3.133901 TGCGTCAAAGATAAGGAGGCATA 59.866 43.478 0.00 0.00 44.50 3.14
249 251 6.572509 GCGTCAAAGATAAGGAGGCATATCTA 60.573 42.308 0.00 0.00 40.89 1.98
251 253 7.704472 CGTCAAAGATAAGGAGGCATATCTATC 59.296 40.741 0.00 0.00 37.78 2.08
252 254 8.535335 GTCAAAGATAAGGAGGCATATCTATCA 58.465 37.037 0.00 0.00 37.78 2.15
253 255 8.756927 TCAAAGATAAGGAGGCATATCTATCAG 58.243 37.037 0.00 0.00 37.78 2.90
254 256 8.538701 CAAAGATAAGGAGGCATATCTATCAGT 58.461 37.037 0.00 0.00 37.78 3.41
255 257 8.677870 AAGATAAGGAGGCATATCTATCAGTT 57.322 34.615 0.00 0.00 37.78 3.16
274 276 5.783360 TCAGTTGGGTCTTTGAACCTATAGA 59.217 40.000 0.00 0.00 40.68 1.98
291 293 7.410174 ACCTATAGACCCAAAACATGAAATCA 58.590 34.615 0.00 0.00 0.00 2.57
320 322 9.099454 GATTACATTTCGAAGAGTATCCAAAGT 57.901 33.333 11.12 0.00 38.43 2.66
322 324 6.464222 ACATTTCGAAGAGTATCCAAAGTCA 58.536 36.000 0.00 0.00 38.43 3.41
331 333 5.540337 AGAGTATCCAAAGTCAAGTGAGTCA 59.460 40.000 0.00 0.00 33.66 3.41
332 334 5.788450 AGTATCCAAAGTCAAGTGAGTCAG 58.212 41.667 0.00 0.00 0.00 3.51
333 335 4.696479 ATCCAAAGTCAAGTGAGTCAGT 57.304 40.909 0.00 0.00 0.00 3.41
335 337 2.874701 CCAAAGTCAAGTGAGTCAGTGG 59.125 50.000 0.00 0.00 0.00 4.00
336 338 3.432186 CCAAAGTCAAGTGAGTCAGTGGA 60.432 47.826 0.00 0.22 31.02 4.02
337 339 4.191544 CAAAGTCAAGTGAGTCAGTGGAA 58.808 43.478 6.62 0.00 0.00 3.53
338 340 3.460857 AGTCAAGTGAGTCAGTGGAAC 57.539 47.619 6.62 3.51 0.00 3.62
339 341 2.766263 AGTCAAGTGAGTCAGTGGAACA 59.234 45.455 6.62 0.00 41.43 3.18
350 352 4.517663 TGGAACACCTGGGCATTG 57.482 55.556 0.00 0.00 0.00 2.82
351 353 1.907807 TGGAACACCTGGGCATTGC 60.908 57.895 0.00 0.00 0.00 3.56
352 354 2.568090 GAACACCTGGGCATTGCG 59.432 61.111 1.91 0.00 0.00 4.85
358 362 2.898840 CTGGGCATTGCGCGAGAT 60.899 61.111 12.10 0.00 44.57 2.75
364 368 0.937304 GCATTGCGCGAGATTCCTAA 59.063 50.000 12.10 0.00 0.00 2.69
405 409 7.598759 TTTTCAGATGTACTATAGTCCCTCC 57.401 40.000 9.12 0.00 0.00 4.30
455 459 7.834681 AGAGAATCCAATATAGGCTACATACGA 59.165 37.037 0.00 0.00 33.66 3.43
457 461 8.470805 AGAATCCAATATAGGCTACATACGAAG 58.529 37.037 0.00 0.00 0.00 3.79
536 550 5.596836 TTTTGAGACAATTCCACAAAGCT 57.403 34.783 0.00 0.00 33.27 3.74
537 551 5.596836 TTTGAGACAATTCCACAAAGCTT 57.403 34.783 0.00 0.00 30.31 3.74
538 552 5.596836 TTGAGACAATTCCACAAAGCTTT 57.403 34.783 5.69 5.69 0.00 3.51
539 553 5.186996 TGAGACAATTCCACAAAGCTTTC 57.813 39.130 9.23 0.00 0.00 2.62
540 554 4.222114 GAGACAATTCCACAAAGCTTTCG 58.778 43.478 9.23 7.84 0.00 3.46
541 555 3.632145 AGACAATTCCACAAAGCTTTCGT 59.368 39.130 9.23 8.49 0.00 3.85
542 556 3.964909 ACAATTCCACAAAGCTTTCGTC 58.035 40.909 9.23 0.00 0.00 4.20
543 557 3.380004 ACAATTCCACAAAGCTTTCGTCA 59.620 39.130 9.23 0.00 0.00 4.35
544 558 4.037923 ACAATTCCACAAAGCTTTCGTCAT 59.962 37.500 9.23 0.00 0.00 3.06
545 559 3.624326 TTCCACAAAGCTTTCGTCATG 57.376 42.857 9.23 0.00 0.00 3.07
546 560 2.571212 TCCACAAAGCTTTCGTCATGT 58.429 42.857 9.23 0.40 0.00 3.21
547 561 3.734463 TCCACAAAGCTTTCGTCATGTA 58.266 40.909 9.23 0.00 0.00 2.29
548 562 3.745975 TCCACAAAGCTTTCGTCATGTAG 59.254 43.478 9.23 0.00 0.00 2.74
549 563 3.498397 CCACAAAGCTTTCGTCATGTAGT 59.502 43.478 9.23 0.00 0.00 2.73
553 567 6.792250 CACAAAGCTTTCGTCATGTAGTAAAG 59.208 38.462 9.23 0.96 0.00 1.85
558 572 6.366332 AGCTTTCGTCATGTAGTAAAGACTTG 59.634 38.462 13.12 0.00 37.10 3.16
577 591 7.540299 AGACTTGTATTTAGAGACGGAGAAAG 58.460 38.462 0.00 0.00 0.00 2.62
590 604 9.186837 AGAGACGGAGAAAGTATGATTTACTAA 57.813 33.333 0.00 0.00 0.00 2.24
773 788 4.003648 CTCTCTTAAAACCCAACGCTCAT 58.996 43.478 0.00 0.00 0.00 2.90
794 810 1.318576 CCCTCTTCCAAAACACGCTT 58.681 50.000 0.00 0.00 0.00 4.68
835 851 1.691976 CAAACCCCAACCCTCCTTTTC 59.308 52.381 0.00 0.00 0.00 2.29
951 967 2.167281 TCGGATCAGCTTCTTCTCCTTG 59.833 50.000 0.00 0.00 0.00 3.61
1021 1041 3.007323 ACTGGAACTACGGCCCCC 61.007 66.667 0.00 0.00 0.00 5.40
1153 1173 3.412386 AGTTCAATTTCCGAGACCTTGG 58.588 45.455 0.00 0.00 35.37 3.61
1167 1187 1.047002 CCTTGGGTTCATTGGTTGCA 58.953 50.000 0.00 0.00 0.00 4.08
1191 1211 2.609459 AGCTCGGTTATTTGCGAGATTG 59.391 45.455 0.00 0.00 0.00 2.67
1261 1398 2.844451 GCTGGTGAAGTTTGCGGCA 61.844 57.895 0.00 0.00 0.00 5.69
1292 1429 2.225727 GCACTTGGTACTACAACTTGCC 59.774 50.000 0.00 0.00 32.20 4.52
1351 1488 1.522668 TTTGGCAATCGAGACTGGTG 58.477 50.000 0.00 0.00 0.00 4.17
1380 1517 6.558009 TGATACTGATACGTACCAACAGTTC 58.442 40.000 22.02 19.00 41.17 3.01
1435 1572 3.181494 GCTTCCTTCTAGAACCGAGAGAC 60.181 52.174 0.00 0.00 0.00 3.36
1447 1584 3.676093 ACCGAGAGACCTTTTGGATTTC 58.324 45.455 1.24 0.00 44.07 2.17
1523 1661 7.856145 ATCTCGCATTGAATTTCTCTAGTTT 57.144 32.000 0.00 0.00 0.00 2.66
1604 1743 1.202592 TGCGTAGACCTTGCTGTTTCA 60.203 47.619 0.00 0.00 0.00 2.69
1674 1813 2.847441 CCAGCATGTGATCAGTGCTAT 58.153 47.619 26.44 10.69 46.67 2.97
1676 1815 3.003378 CCAGCATGTGATCAGTGCTATTG 59.997 47.826 26.44 18.34 46.67 1.90
1686 1825 0.523072 AGTGCTATTGCCTGTTTGCG 59.477 50.000 0.00 0.00 38.71 4.85
1728 1867 2.170166 TCTTGCAAGCCGATGGATTTT 58.830 42.857 21.99 0.00 0.00 1.82
1730 1869 3.761218 TCTTGCAAGCCGATGGATTTTTA 59.239 39.130 21.99 0.00 0.00 1.52
1951 2134 6.869315 TTTCATGAACATTTGTACTTCCGA 57.131 33.333 7.89 0.00 0.00 4.55
2042 2225 1.024579 GCTCGAAAGCCGGAATCCAA 61.025 55.000 5.05 0.00 43.10 3.53
2094 2314 9.286946 GAAGCATACTGATTCTGAATTGAAAAG 57.713 33.333 4.11 1.43 39.48 2.27
2100 2320 6.703165 ACTGATTCTGAATTGAAAAGTTTGCC 59.297 34.615 4.11 0.00 0.00 4.52
2130 2350 9.360093 CTAATTCTGAAGTTGTCGTCTTAGAAT 57.640 33.333 0.00 0.00 35.75 2.40
2347 2599 5.224888 TCGTTGTACCTGTTCTTATCACAC 58.775 41.667 0.00 0.00 0.00 3.82
2447 2699 3.478509 TGCTGCCGTTTCCTTTTACTTA 58.521 40.909 0.00 0.00 0.00 2.24
2473 2725 3.378512 TGATATCTGGCCTCTTCAGTGT 58.621 45.455 3.32 0.00 34.15 3.55
2492 2744 7.734942 TCAGTGTAGATGTCAATGGCATAATA 58.265 34.615 0.00 0.00 32.78 0.98
2540 2792 4.601406 TTCCATGTTTGGGGTAAGCTAT 57.399 40.909 0.00 0.00 43.81 2.97
2592 2898 6.948353 ACAAATGAACATCTGCGTACATATC 58.052 36.000 0.00 0.00 0.00 1.63
2597 2903 5.402270 TGAACATCTGCGTACATATCGATTG 59.598 40.000 1.71 4.64 0.00 2.67
2632 2938 1.248101 TTGTGCAGGTCTCGATCGGA 61.248 55.000 16.41 8.74 0.00 4.55
2641 2947 4.504461 CAGGTCTCGATCGGATACTTTTTG 59.496 45.833 16.41 5.64 0.00 2.44
2651 2957 5.849510 TCGGATACTTTTTGACAGACTTGA 58.150 37.500 0.00 0.00 0.00 3.02
2702 3008 9.292195 CTTTAGGTGGAAAGGAATTTGTAAGTA 57.708 33.333 0.00 0.00 33.54 2.24
2738 3056 6.246420 ACTGTGTGAAGAAGATTAATGTGC 57.754 37.500 0.00 0.00 0.00 4.57
2743 3061 4.554973 GTGAAGAAGATTAATGTGCGTTGC 59.445 41.667 0.00 0.00 0.00 4.17
2748 3066 5.182001 AGAAGATTAATGTGCGTTGCTTTCT 59.818 36.000 0.00 0.00 0.00 2.52
2750 3068 6.494893 AGATTAATGTGCGTTGCTTTCTTA 57.505 33.333 0.00 0.00 0.00 2.10
2753 3071 3.542712 ATGTGCGTTGCTTTCTTACTG 57.457 42.857 0.00 0.00 0.00 2.74
2772 3123 8.470805 TCTTACTGATCAGGAGTTGTTTCTATC 58.529 37.037 26.08 0.00 0.00 2.08
2774 3125 7.962995 ACTGATCAGGAGTTGTTTCTATCTA 57.037 36.000 26.08 0.00 0.00 1.98
2778 3129 9.823647 TGATCAGGAGTTGTTTCTATCTAATTC 57.176 33.333 0.00 0.00 0.00 2.17
2783 3134 9.660180 AGGAGTTGTTTCTATCTAATTCTGTTC 57.340 33.333 0.00 0.00 0.00 3.18
2813 3164 3.206150 GCATCACGGACTTTCCATGTAT 58.794 45.455 0.00 0.00 35.91 2.29
2819 3170 4.016444 ACGGACTTTCCATGTATGCAATT 58.984 39.130 0.00 0.00 35.91 2.32
2861 3212 4.700213 GGGAAAGCACACATGTACATACTT 59.300 41.667 8.32 4.95 0.00 2.24
2942 3293 4.575885 TGCCACTAATACAGTCCTTCAAC 58.424 43.478 0.00 0.00 34.26 3.18
3124 3477 3.585862 TGCTTTCCTGAAGTCGTATGAC 58.414 45.455 7.01 7.01 45.86 3.06
3149 3502 9.013229 ACTCATGAAACTTGCATGTTAGAATTA 57.987 29.630 17.36 0.82 42.77 1.40
3196 3549 1.002544 GGCAGCCTTTACTGTCTCTGT 59.997 52.381 3.29 0.00 39.25 3.41
3302 3655 4.640771 TGAATGTCTCTGCCTTTTACCT 57.359 40.909 0.00 0.00 0.00 3.08
3303 3656 4.985538 TGAATGTCTCTGCCTTTTACCTT 58.014 39.130 0.00 0.00 0.00 3.50
3304 3657 5.385198 TGAATGTCTCTGCCTTTTACCTTT 58.615 37.500 0.00 0.00 0.00 3.11
3342 3698 2.287909 GCTCGATACGCTCCTCTTCATT 60.288 50.000 0.00 0.00 0.00 2.57
3370 3726 6.056884 AGTCAAATGAAAATGCCAATTGTGT 58.943 32.000 4.43 0.00 0.00 3.72
3374 3730 3.806380 TGAAAATGCCAATTGTGTGCTT 58.194 36.364 4.43 0.00 0.00 3.91
3378 3734 1.689984 TGCCAATTGTGTGCTTCAGA 58.310 45.000 4.43 0.00 0.00 3.27
3389 3745 4.681421 CTTCAGAAGCAGCGACCA 57.319 55.556 0.00 0.00 0.00 4.02
3390 3746 3.149899 CTTCAGAAGCAGCGACCAT 57.850 52.632 0.00 0.00 0.00 3.55
3391 3747 0.725686 CTTCAGAAGCAGCGACCATG 59.274 55.000 0.00 0.00 0.00 3.66
3392 3748 1.300971 TTCAGAAGCAGCGACCATGC 61.301 55.000 0.00 0.00 44.18 4.06
3393 3749 2.437359 AGAAGCAGCGACCATGCC 60.437 61.111 0.00 0.00 44.97 4.40
3394 3750 2.747460 GAAGCAGCGACCATGCCA 60.747 61.111 0.00 0.00 44.97 4.92
3395 3751 2.044650 AAGCAGCGACCATGCCAT 60.045 55.556 0.00 0.00 44.97 4.40
3396 3752 2.332362 GAAGCAGCGACCATGCCATG 62.332 60.000 0.00 0.00 44.97 3.66
3397 3753 4.564116 GCAGCGACCATGCCATGC 62.564 66.667 0.00 0.00 37.73 4.06
3398 3754 2.827190 CAGCGACCATGCCATGCT 60.827 61.111 0.00 0.00 36.05 3.79
3399 3755 2.827190 AGCGACCATGCCATGCTG 60.827 61.111 0.00 0.00 33.99 4.41
3407 3763 1.000607 CCATGCCATGCTGATGCTAAC 60.001 52.381 0.00 0.00 40.48 2.34
3442 3798 5.301835 AGCATTTGTGACTAGATATGCCT 57.698 39.130 0.00 0.00 35.90 4.75
3444 3800 5.071519 AGCATTTGTGACTAGATATGCCTCT 59.928 40.000 0.00 0.00 35.90 3.69
3449 3805 6.641169 TGTGACTAGATATGCCTCTAACTG 57.359 41.667 0.00 0.00 0.00 3.16
3465 3821 7.121315 GCCTCTAACTGTTTATTCATTGTCCTT 59.879 37.037 0.00 0.00 0.00 3.36
3550 3906 9.737427 CGTATATTTCTTCACTCATGTCTACTT 57.263 33.333 0.00 0.00 0.00 2.24
3570 3926 6.445451 ACTTCCATTATGATCAGGTATGCT 57.555 37.500 0.09 0.00 0.00 3.79
3571 3927 7.559335 ACTTCCATTATGATCAGGTATGCTA 57.441 36.000 0.09 0.00 0.00 3.49
3572 3928 7.977818 ACTTCCATTATGATCAGGTATGCTAA 58.022 34.615 0.09 0.00 0.00 3.09
3678 4185 6.918067 TTAGTCCTCAGAAGATTCAGACAA 57.082 37.500 0.00 0.00 0.00 3.18
3698 4214 3.915437 ATTCGATTGAAACCGTTTGCT 57.085 38.095 0.00 0.00 37.71 3.91
3699 4215 5.150683 CAATTCGATTGAAACCGTTTGCTA 58.849 37.500 0.00 0.00 42.83 3.49
3856 4374 1.143813 CTGGAAGATATGCAGGGGGT 58.856 55.000 0.00 0.00 43.29 4.95
3884 4402 3.772025 AGAACCCTGTCGAAGATGAAGAT 59.228 43.478 0.00 0.00 40.67 2.40
3921 4439 3.451540 GGAAGACGGATTAGAAGGAAGGT 59.548 47.826 0.00 0.00 0.00 3.50
3999 4517 4.525912 AAAGCTCGGCTGATCAAATTTT 57.474 36.364 0.00 0.00 39.62 1.82
4008 4526 9.573133 CTCGGCTGATCAAATTTTAACTAAAAT 57.427 29.630 0.00 2.27 45.06 1.82
4030 4548 4.862350 TCACGACACTTATTTTGAGACGA 58.138 39.130 0.00 0.00 0.00 4.20
4033 4551 5.401376 CACGACACTTATTTTGAGACGAAGA 59.599 40.000 0.00 0.00 0.00 2.87
4036 4554 7.004225 CGACACTTATTTTGAGACGAAGAAAG 58.996 38.462 0.00 0.00 0.00 2.62
4037 4555 6.659776 ACACTTATTTTGAGACGAAGAAAGC 58.340 36.000 0.00 0.00 0.00 3.51
4048 4566 2.687935 ACGAAGAAAGCATGTTGGTGTT 59.312 40.909 0.00 0.00 0.00 3.32
4055 4573 6.815089 AGAAAGCATGTTGGTGTTTGATTTA 58.185 32.000 0.00 0.00 28.78 1.40
4200 4720 3.878086 TCGTTGCTGAATCTGTGAAAC 57.122 42.857 0.00 0.00 37.35 2.78
4202 4722 2.310577 GTTGCTGAATCTGTGAAACGC 58.689 47.619 0.00 0.00 42.39 4.84
4222 4742 2.223272 GCTATTCCTTTTTCCTTCGCCG 60.223 50.000 0.00 0.00 0.00 6.46
4237 4757 2.006772 GCCGACGTGAAAGGCTATG 58.993 57.895 12.06 0.00 46.83 2.23
4251 4771 1.153086 CTATGCAGAGGTGGGGTGC 60.153 63.158 0.00 0.00 37.73 5.01
4266 4786 2.747460 TGCCGCATCAAGCACTCC 60.747 61.111 0.00 0.00 46.13 3.85
4285 4805 1.374125 CACATCGTGGCGGAACTGA 60.374 57.895 0.00 0.00 0.00 3.41
4287 4807 2.125512 ATCGTGGCGGAACTGAGC 60.126 61.111 0.00 0.00 0.00 4.26
4288 4808 3.989698 ATCGTGGCGGAACTGAGCG 62.990 63.158 0.00 0.00 0.00 5.03
4290 4810 4.681978 GTGGCGGAACTGAGCGGT 62.682 66.667 0.00 0.00 0.00 5.68
4291 4811 4.373116 TGGCGGAACTGAGCGGTC 62.373 66.667 7.89 7.89 0.00 4.79
4292 4812 4.373116 GGCGGAACTGAGCGGTCA 62.373 66.667 17.59 17.59 0.00 4.02
4388 4911 2.260154 TGTCTACCGCGTCGTGGAA 61.260 57.895 30.66 12.81 36.58 3.53
4396 4919 3.767230 CGTCGTGGAAGCACGCAG 61.767 66.667 0.00 0.00 46.91 5.18
4433 4956 3.723348 GGACAACGTTGCCGCCTC 61.723 66.667 27.61 16.58 37.70 4.70
4527 5051 4.287781 TCACGCAACGGCCGAAGA 62.288 61.111 35.90 16.26 36.38 2.87
4593 5119 1.433837 AACGGTCTTTCACGTGCACC 61.434 55.000 11.67 12.53 43.31 5.01
4594 5120 1.885388 CGGTCTTTCACGTGCACCA 60.885 57.895 11.67 0.00 0.00 4.17
4596 5122 0.814010 GGTCTTTCACGTGCACCACT 60.814 55.000 11.67 0.00 31.34 4.00
4614 5140 3.502211 CCACTATTGTTTTCCTCGTGCTT 59.498 43.478 0.00 0.00 0.00 3.91
4616 5142 4.213270 CACTATTGTTTTCCTCGTGCTTGA 59.787 41.667 0.00 0.00 0.00 3.02
4634 5160 3.996150 TGAGGTCGAAGAAAACGTACT 57.004 42.857 0.00 0.00 39.69 2.73
4635 5161 5.437289 TTGAGGTCGAAGAAAACGTACTA 57.563 39.130 0.00 0.00 39.69 1.82
4636 5162 4.787598 TGAGGTCGAAGAAAACGTACTAC 58.212 43.478 0.00 0.00 39.69 2.73
4637 5163 4.516698 TGAGGTCGAAGAAAACGTACTACT 59.483 41.667 0.00 0.00 39.69 2.57
4638 5164 5.040715 AGGTCGAAGAAAACGTACTACTC 57.959 43.478 0.00 0.00 39.69 2.59
4639 5165 4.759183 AGGTCGAAGAAAACGTACTACTCT 59.241 41.667 0.00 0.00 39.69 3.24
4640 5166 5.085390 GGTCGAAGAAAACGTACTACTCTC 58.915 45.833 0.00 0.00 39.69 3.20
4641 5167 5.106752 GGTCGAAGAAAACGTACTACTCTCT 60.107 44.000 0.00 0.00 39.69 3.10
4642 5168 6.014898 GTCGAAGAAAACGTACTACTCTCTC 58.985 44.000 0.00 0.00 39.69 3.20
4643 5169 5.121454 TCGAAGAAAACGTACTACTCTCTCC 59.879 44.000 0.00 0.00 0.00 3.71
4644 5170 4.943142 AGAAAACGTACTACTCTCTCCG 57.057 45.455 0.00 0.00 0.00 4.63
4645 5171 4.322567 AGAAAACGTACTACTCTCTCCGT 58.677 43.478 0.00 0.00 0.00 4.69
4646 5172 4.391523 AGAAAACGTACTACTCTCTCCGTC 59.608 45.833 0.00 0.00 0.00 4.79
4647 5173 2.307934 ACGTACTACTCTCTCCGTCC 57.692 55.000 0.00 0.00 0.00 4.79
4648 5174 1.207390 CGTACTACTCTCTCCGTCCG 58.793 60.000 0.00 0.00 0.00 4.79
4649 5175 1.202348 CGTACTACTCTCTCCGTCCGA 60.202 57.143 0.00 0.00 0.00 4.55
4650 5176 2.736719 CGTACTACTCTCTCCGTCCGAA 60.737 54.545 0.00 0.00 0.00 4.30
4651 5177 2.486472 ACTACTCTCTCCGTCCGAAA 57.514 50.000 0.00 0.00 0.00 3.46
4652 5178 2.787994 ACTACTCTCTCCGTCCGAAAA 58.212 47.619 0.00 0.00 0.00 2.29
4653 5179 3.152341 ACTACTCTCTCCGTCCGAAAAA 58.848 45.455 0.00 0.00 0.00 1.94
4683 5209 8.243426 TGTCCTTCAAATGAATGTATTTAGTGC 58.757 33.333 0.00 0.00 33.01 4.40
4684 5210 8.462016 GTCCTTCAAATGAATGTATTTAGTGCT 58.538 33.333 0.00 0.00 33.01 4.40
4685 5211 9.679661 TCCTTCAAATGAATGTATTTAGTGCTA 57.320 29.630 0.00 0.00 33.01 3.49
4686 5212 9.941664 CCTTCAAATGAATGTATTTAGTGCTAG 57.058 33.333 0.00 0.00 33.01 3.42
4703 5229 9.778741 TTAGTGCTAGATACATTCATTTAAGGG 57.221 33.333 0.00 0.00 0.00 3.95
4704 5230 8.034313 AGTGCTAGATACATTCATTTAAGGGA 57.966 34.615 0.00 0.00 0.00 4.20
4705 5231 7.934120 AGTGCTAGATACATTCATTTAAGGGAC 59.066 37.037 0.00 0.00 0.00 4.46
4706 5232 7.715249 GTGCTAGATACATTCATTTAAGGGACA 59.285 37.037 0.00 0.00 0.00 4.02
4707 5233 8.271458 TGCTAGATACATTCATTTAAGGGACAA 58.729 33.333 0.00 0.00 0.00 3.18
4708 5234 9.289782 GCTAGATACATTCATTTAAGGGACAAT 57.710 33.333 0.00 0.00 0.00 2.71
4711 5237 9.927081 AGATACATTCATTTAAGGGACAATCTT 57.073 29.630 0.00 0.00 0.00 2.40
4712 5238 9.956720 GATACATTCATTTAAGGGACAATCTTG 57.043 33.333 0.00 0.00 0.00 3.02
4713 5239 7.174107 ACATTCATTTAAGGGACAATCTTGG 57.826 36.000 0.00 0.00 0.00 3.61
4714 5240 6.155049 ACATTCATTTAAGGGACAATCTTGGG 59.845 38.462 0.00 0.00 0.00 4.12
4715 5241 5.528600 TCATTTAAGGGACAATCTTGGGA 57.471 39.130 0.00 0.00 0.00 4.37
4716 5242 5.261216 TCATTTAAGGGACAATCTTGGGAC 58.739 41.667 0.00 0.00 0.00 4.46
4717 5243 4.733077 TTTAAGGGACAATCTTGGGACA 57.267 40.909 0.00 0.00 0.00 4.02
4730 5256 2.249844 TGGGACAAGTTTTCTCGGAC 57.750 50.000 0.00 0.00 31.92 4.79
4731 5257 1.145803 GGGACAAGTTTTCTCGGACG 58.854 55.000 0.00 0.00 0.00 4.79
4732 5258 1.145803 GGACAAGTTTTCTCGGACGG 58.854 55.000 0.00 0.00 0.00 4.79
4733 5259 1.269936 GGACAAGTTTTCTCGGACGGA 60.270 52.381 0.00 0.00 0.00 4.69
4734 5260 2.476821 GACAAGTTTTCTCGGACGGAA 58.523 47.619 0.00 0.00 0.00 4.30
4735 5261 2.475487 GACAAGTTTTCTCGGACGGAAG 59.525 50.000 0.00 0.00 0.00 3.46
4736 5262 1.798813 CAAGTTTTCTCGGACGGAAGG 59.201 52.381 0.00 0.00 0.00 3.46
4737 5263 1.335145 AGTTTTCTCGGACGGAAGGA 58.665 50.000 0.00 0.00 0.00 3.36
4738 5264 1.272769 AGTTTTCTCGGACGGAAGGAG 59.727 52.381 0.00 0.00 0.00 3.69
4739 5265 1.000618 GTTTTCTCGGACGGAAGGAGT 59.999 52.381 0.00 0.00 0.00 3.85
4740 5266 2.205022 TTTCTCGGACGGAAGGAGTA 57.795 50.000 0.00 0.00 0.00 2.59
4741 5267 1.457346 TTCTCGGACGGAAGGAGTAC 58.543 55.000 0.00 0.00 0.00 2.73
4742 5268 0.393537 TCTCGGACGGAAGGAGTACC 60.394 60.000 0.00 0.00 0.00 3.34
4783 5309 9.869757 AAATAAAAGTCTGTTTTAAGTTGCACT 57.130 25.926 0.00 0.00 0.00 4.40
4784 5310 9.869757 AATAAAAGTCTGTTTTAAGTTGCACTT 57.130 25.926 6.74 6.74 41.97 3.16
4785 5311 9.869757 ATAAAAGTCTGTTTTAAGTTGCACTTT 57.130 25.926 6.82 0.00 39.51 2.66
4786 5312 8.601845 AAAAGTCTGTTTTAAGTTGCACTTTT 57.398 26.923 6.82 0.00 39.51 2.27
4787 5313 7.812309 AAGTCTGTTTTAAGTTGCACTTTTC 57.188 32.000 6.82 0.00 39.51 2.29
4788 5314 6.919721 AGTCTGTTTTAAGTTGCACTTTTCA 58.080 32.000 6.82 2.81 39.51 2.69
4789 5315 6.806739 AGTCTGTTTTAAGTTGCACTTTTCAC 59.193 34.615 6.82 0.00 39.51 3.18
4790 5316 6.034577 GTCTGTTTTAAGTTGCACTTTTCACC 59.965 38.462 6.82 0.00 39.51 4.02
4791 5317 5.784177 TGTTTTAAGTTGCACTTTTCACCA 58.216 33.333 6.82 0.00 39.51 4.17
4792 5318 6.223852 TGTTTTAAGTTGCACTTTTCACCAA 58.776 32.000 6.82 0.00 39.51 3.67
4793 5319 6.706270 TGTTTTAAGTTGCACTTTTCACCAAA 59.294 30.769 6.82 0.00 39.51 3.28
4794 5320 7.389053 TGTTTTAAGTTGCACTTTTCACCAAAT 59.611 29.630 6.82 0.00 39.51 2.32
4795 5321 7.913674 TTTAAGTTGCACTTTTCACCAAATT 57.086 28.000 6.82 0.00 39.51 1.82
4796 5322 9.436957 TTTTAAGTTGCACTTTTCACCAAATTA 57.563 25.926 6.82 0.00 39.51 1.40
4797 5323 9.436957 TTTAAGTTGCACTTTTCACCAAATTAA 57.563 25.926 6.82 0.00 39.51 1.40
4798 5324 7.913674 AAGTTGCACTTTTCACCAAATTAAA 57.086 28.000 0.00 0.00 34.11 1.52
4799 5325 7.538303 AGTTGCACTTTTCACCAAATTAAAG 57.462 32.000 0.00 0.00 34.58 1.85
4800 5326 7.102993 AGTTGCACTTTTCACCAAATTAAAGT 58.897 30.769 0.00 0.00 40.42 2.66
4801 5327 7.606073 AGTTGCACTTTTCACCAAATTAAAGTT 59.394 29.630 0.00 0.00 38.41 2.66
4802 5328 7.301068 TGCACTTTTCACCAAATTAAAGTTG 57.699 32.000 0.00 0.00 38.41 3.16
4803 5329 6.183360 TGCACTTTTCACCAAATTAAAGTTGC 60.183 34.615 0.00 0.00 38.41 4.17
4804 5330 6.037062 GCACTTTTCACCAAATTAAAGTTGCT 59.963 34.615 0.00 0.00 38.41 3.91
4805 5331 7.621102 CACTTTTCACCAAATTAAAGTTGCTC 58.379 34.615 0.00 0.00 38.41 4.26
4806 5332 7.277539 CACTTTTCACCAAATTAAAGTTGCTCA 59.722 33.333 0.00 0.00 38.41 4.26
4807 5333 7.492344 ACTTTTCACCAAATTAAAGTTGCTCAG 59.508 33.333 0.00 0.00 37.50 3.35
4808 5334 5.452078 TCACCAAATTAAAGTTGCTCAGG 57.548 39.130 0.00 0.00 0.00 3.86
4809 5335 4.280677 TCACCAAATTAAAGTTGCTCAGGG 59.719 41.667 0.00 0.00 0.00 4.45
4810 5336 3.006859 ACCAAATTAAAGTTGCTCAGGGC 59.993 43.478 0.00 0.00 42.22 5.19
4842 5368 4.680237 CGGCCAGCGACCAAGACA 62.680 66.667 2.24 0.00 0.00 3.41
4843 5369 2.045926 GGCCAGCGACCAAGACAT 60.046 61.111 0.00 0.00 0.00 3.06
4844 5370 2.401766 GGCCAGCGACCAAGACATG 61.402 63.158 0.00 0.00 0.00 3.21
4853 5379 2.496942 CCAAGACATGGGCATGGAC 58.503 57.895 6.31 0.00 46.27 4.02
4854 5380 0.033796 CCAAGACATGGGCATGGACT 60.034 55.000 6.31 0.00 46.27 3.85
4855 5381 1.386533 CAAGACATGGGCATGGACTC 58.613 55.000 0.00 0.00 42.91 3.36
4856 5382 0.257039 AAGACATGGGCATGGACTCC 59.743 55.000 0.00 0.00 42.91 3.85
4857 5383 1.152881 GACATGGGCATGGACTCCC 60.153 63.158 0.00 0.00 42.91 4.30
4873 5399 2.674380 CCAGCTGGGTGTGAAGCC 60.674 66.667 26.14 0.00 40.42 4.35
4874 5400 3.052082 CAGCTGGGTGTGAAGCCG 61.052 66.667 5.57 0.00 40.42 5.52
4875 5401 3.560251 AGCTGGGTGTGAAGCCGT 61.560 61.111 0.00 0.00 40.42 5.68
4876 5402 3.357079 GCTGGGTGTGAAGCCGTG 61.357 66.667 0.00 0.00 33.12 4.94
4877 5403 3.357079 CTGGGTGTGAAGCCGTGC 61.357 66.667 0.00 0.00 0.00 5.34
4879 5405 4.980805 GGGTGTGAAGCCGTGCGA 62.981 66.667 0.00 0.00 0.00 5.10
4880 5406 3.414700 GGTGTGAAGCCGTGCGAG 61.415 66.667 0.00 0.00 0.00 5.03
4881 5407 2.355837 GTGTGAAGCCGTGCGAGA 60.356 61.111 0.00 0.00 0.00 4.04
4882 5408 2.355837 TGTGAAGCCGTGCGAGAC 60.356 61.111 0.00 0.00 0.00 3.36
4883 5409 2.355837 GTGAAGCCGTGCGAGACA 60.356 61.111 0.00 0.00 0.00 3.41
4884 5410 2.049156 TGAAGCCGTGCGAGACAG 60.049 61.111 0.00 0.00 0.00 3.51
4885 5411 3.482783 GAAGCCGTGCGAGACAGC 61.483 66.667 0.00 0.00 37.71 4.40
4889 5415 4.700365 CCGTGCGAGACAGCGACA 62.700 66.667 0.00 0.00 40.67 4.35
4890 5416 3.168604 CGTGCGAGACAGCGACAG 61.169 66.667 0.00 0.00 40.67 3.51
4891 5417 2.807045 GTGCGAGACAGCGACAGG 60.807 66.667 0.00 0.00 40.67 4.00
4892 5418 4.056125 TGCGAGACAGCGACAGGG 62.056 66.667 0.00 0.00 40.67 4.45
4893 5419 4.803426 GCGAGACAGCGACAGGGG 62.803 72.222 0.00 0.00 0.00 4.79
4894 5420 3.062466 CGAGACAGCGACAGGGGA 61.062 66.667 0.00 0.00 0.00 4.81
4895 5421 2.888863 GAGACAGCGACAGGGGAG 59.111 66.667 0.00 0.00 0.00 4.30
4896 5422 2.681778 AGACAGCGACAGGGGAGG 60.682 66.667 0.00 0.00 0.00 4.30
4897 5423 4.459089 GACAGCGACAGGGGAGGC 62.459 72.222 0.00 0.00 0.00 4.70
4906 5432 4.888325 AGGGGAGGCCCTGGATCG 62.888 72.222 0.00 0.00 44.66 3.69
4910 5436 3.866582 GAGGCCCTGGATCGGGTG 61.867 72.222 0.00 0.00 46.47 4.61
4911 5437 4.414956 AGGCCCTGGATCGGGTGA 62.415 66.667 0.00 0.00 46.47 4.02
4912 5438 3.866582 GGCCCTGGATCGGGTGAG 61.867 72.222 7.44 0.00 46.47 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.784177 ACTAATCTGACACGTGAAGTTGAT 58.216 37.500 25.01 14.17 0.00 2.57
3 4 5.277345 GCAAACTAATCTGACACGTGAAGTT 60.277 40.000 25.01 14.96 0.00 2.66
4 5 4.211374 GCAAACTAATCTGACACGTGAAGT 59.789 41.667 25.01 10.14 0.00 3.01
8 9 3.067106 AGGCAAACTAATCTGACACGTG 58.933 45.455 15.48 15.48 0.00 4.49
9 10 3.326747 GAGGCAAACTAATCTGACACGT 58.673 45.455 0.00 0.00 0.00 4.49
10 11 2.673368 GGAGGCAAACTAATCTGACACG 59.327 50.000 0.00 0.00 0.00 4.49
11 12 2.673368 CGGAGGCAAACTAATCTGACAC 59.327 50.000 0.00 0.00 0.00 3.67
12 13 2.935238 GCGGAGGCAAACTAATCTGACA 60.935 50.000 0.00 0.00 39.62 3.58
13 14 1.666189 GCGGAGGCAAACTAATCTGAC 59.334 52.381 0.00 0.00 39.62 3.51
14 15 2.024176 GCGGAGGCAAACTAATCTGA 57.976 50.000 0.00 0.00 39.62 3.27
22 23 7.935368 TAGGTTATACCATGCGGAGGCAAAC 62.935 48.000 0.00 0.00 44.43 2.93
23 24 5.275473 AGGTTATACCATGCGGAGGCAAA 62.275 47.826 0.00 0.00 44.43 3.68
24 25 3.817155 AGGTTATACCATGCGGAGGCAA 61.817 50.000 0.00 0.00 44.43 4.52
25 26 2.315133 AGGTTATACCATGCGGAGGCA 61.315 52.381 0.00 0.00 45.01 4.75
26 27 0.396811 AGGTTATACCATGCGGAGGC 59.603 55.000 0.00 0.00 41.95 4.70
27 28 3.513912 TCATAGGTTATACCATGCGGAGG 59.486 47.826 0.00 0.00 41.95 4.30
28 29 4.220821 ACTCATAGGTTATACCATGCGGAG 59.779 45.833 0.00 0.00 41.95 4.63
29 30 4.157246 ACTCATAGGTTATACCATGCGGA 58.843 43.478 0.00 0.00 41.95 5.54
30 31 4.537135 ACTCATAGGTTATACCATGCGG 57.463 45.455 0.00 0.00 41.95 5.69
31 32 6.631016 ACATACTCATAGGTTATACCATGCG 58.369 40.000 0.00 0.00 41.95 4.73
32 33 8.750298 ACTACATACTCATAGGTTATACCATGC 58.250 37.037 0.00 0.00 41.95 4.06
80 81 2.420547 GCAGGAGCATAGGTTCACATCA 60.421 50.000 0.00 0.00 41.58 3.07
82 83 2.338577 GCAGGAGCATAGGTTCACAT 57.661 50.000 0.00 0.00 41.58 3.21
94 95 1.470494 GGAGCTTTAGTTTGCAGGAGC 59.530 52.381 0.00 0.00 42.57 4.70
101 102 9.528018 TGTTAAAAAGAATGGAGCTTTAGTTTG 57.472 29.630 0.00 0.00 34.68 2.93
105 106 9.912634 TGATTGTTAAAAAGAATGGAGCTTTAG 57.087 29.630 0.00 0.00 34.68 1.85
110 111 6.454795 TGGTGATTGTTAAAAAGAATGGAGC 58.545 36.000 0.00 0.00 0.00 4.70
114 115 6.165577 CCCCTGGTGATTGTTAAAAAGAATG 58.834 40.000 0.00 0.00 0.00 2.67
116 117 4.591072 CCCCCTGGTGATTGTTAAAAAGAA 59.409 41.667 0.00 0.00 0.00 2.52
120 121 3.399644 TCTCCCCCTGGTGATTGTTAAAA 59.600 43.478 0.00 0.00 0.00 1.52
121 122 2.990284 TCTCCCCCTGGTGATTGTTAAA 59.010 45.455 0.00 0.00 0.00 1.52
122 123 2.576191 CTCTCCCCCTGGTGATTGTTAA 59.424 50.000 0.00 0.00 33.83 2.01
140 141 9.055689 AGTAATATATTCAGATGGGAATGCTCT 57.944 33.333 0.00 0.00 37.98 4.09
141 142 9.323985 GAGTAATATATTCAGATGGGAATGCTC 57.676 37.037 0.00 0.00 37.98 4.26
142 143 8.829746 TGAGTAATATATTCAGATGGGAATGCT 58.170 33.333 0.00 0.00 37.98 3.79
143 144 9.453572 TTGAGTAATATATTCAGATGGGAATGC 57.546 33.333 0.00 0.00 37.98 3.56
151 152 9.301897 GGGGCTTTTTGAGTAATATATTCAGAT 57.698 33.333 0.00 0.00 0.00 2.90
152 153 8.278639 TGGGGCTTTTTGAGTAATATATTCAGA 58.721 33.333 0.00 0.00 0.00 3.27
177 179 0.178975 TGGTGTACTTTGGCCCCTTG 60.179 55.000 0.00 0.00 0.00 3.61
194 196 0.179161 CCTCGCGTTGTACTCTCTGG 60.179 60.000 5.77 0.00 0.00 3.86
237 239 3.584848 ACCCAACTGATAGATATGCCTCC 59.415 47.826 0.00 0.00 0.00 4.30
239 241 4.497516 AGACCCAACTGATAGATATGCCT 58.502 43.478 0.00 0.00 0.00 4.75
241 243 6.291377 TCAAAGACCCAACTGATAGATATGC 58.709 40.000 0.00 0.00 0.00 3.14
245 247 5.251700 AGGTTCAAAGACCCAACTGATAGAT 59.748 40.000 0.00 0.00 40.73 1.98
249 251 3.884037 AGGTTCAAAGACCCAACTGAT 57.116 42.857 0.00 0.00 40.73 2.90
251 253 5.875359 GTCTATAGGTTCAAAGACCCAACTG 59.125 44.000 0.00 0.00 40.73 3.16
252 254 6.051179 GTCTATAGGTTCAAAGACCCAACT 57.949 41.667 0.00 0.00 40.73 3.16
274 276 9.253832 TGTAATCTATGATTTCATGTTTTGGGT 57.746 29.630 3.30 0.00 37.15 4.51
308 310 5.784177 TGACTCACTTGACTTTGGATACTC 58.216 41.667 0.00 0.00 37.61 2.59
320 322 2.158957 GGTGTTCCACTGACTCACTTGA 60.159 50.000 0.00 0.00 34.40 3.02
322 324 2.119495 AGGTGTTCCACTGACTCACTT 58.881 47.619 0.00 0.00 34.40 3.16
331 333 0.540365 CAATGCCCAGGTGTTCCACT 60.540 55.000 0.00 0.00 34.40 4.00
332 334 1.966762 CAATGCCCAGGTGTTCCAC 59.033 57.895 0.00 0.00 35.89 4.02
333 335 1.907807 GCAATGCCCAGGTGTTCCA 60.908 57.895 0.00 0.00 35.89 3.53
335 337 2.568090 CGCAATGCCCAGGTGTTC 59.432 61.111 0.00 0.00 0.00 3.18
336 338 3.683937 GCGCAATGCCCAGGTGTT 61.684 61.111 0.30 0.00 37.76 3.32
341 343 2.384391 GAATCTCGCGCAATGCCCAG 62.384 60.000 8.75 0.00 42.08 4.45
343 345 2.329339 GAATCTCGCGCAATGCCC 59.671 61.111 8.75 0.00 42.08 5.36
344 346 0.880278 TAGGAATCTCGCGCAATGCC 60.880 55.000 8.75 5.22 42.08 4.40
345 347 0.937304 TTAGGAATCTCGCGCAATGC 59.063 50.000 8.75 0.00 41.47 3.56
346 348 3.885484 AATTAGGAATCTCGCGCAATG 57.115 42.857 8.75 0.00 0.00 2.82
347 349 5.597813 CTAAATTAGGAATCTCGCGCAAT 57.402 39.130 8.75 0.00 0.00 3.56
350 352 7.043072 AATGCCTAAATTAGGAATCTCGCGC 62.043 44.000 22.37 0.00 43.78 6.86
351 353 4.452455 AATGCCTAAATTAGGAATCTCGCG 59.548 41.667 22.37 0.00 43.78 5.87
352 354 5.948992 AATGCCTAAATTAGGAATCTCGC 57.051 39.130 22.37 5.82 43.78 5.03
390 394 7.573968 TTTAGAAACGGAGGGACTATAGTAC 57.426 40.000 6.55 6.55 41.55 2.73
395 399 9.377238 ACTTATATTTAGAAACGGAGGGACTAT 57.623 33.333 0.00 0.00 41.55 2.12
398 402 9.993454 AATACTTATATTTAGAAACGGAGGGAC 57.007 33.333 0.00 0.00 0.00 4.46
513 527 5.976458 AGCTTTGTGGAATTGTCTCAAAAA 58.024 33.333 0.00 0.00 32.11 1.94
515 529 5.596836 AAGCTTTGTGGAATTGTCTCAAA 57.403 34.783 0.00 0.00 0.00 2.69
518 532 4.222114 CGAAAGCTTTGTGGAATTGTCTC 58.778 43.478 18.30 0.00 0.00 3.36
520 534 3.964909 ACGAAAGCTTTGTGGAATTGTC 58.035 40.909 18.30 0.00 0.00 3.18
522 536 3.963665 TGACGAAAGCTTTGTGGAATTG 58.036 40.909 18.30 0.00 0.00 2.32
523 537 4.037923 ACATGACGAAAGCTTTGTGGAATT 59.962 37.500 18.30 0.00 0.00 2.17
524 538 3.569701 ACATGACGAAAGCTTTGTGGAAT 59.430 39.130 18.30 4.44 0.00 3.01
525 539 2.948979 ACATGACGAAAGCTTTGTGGAA 59.051 40.909 18.30 2.23 0.00 3.53
527 541 3.498397 ACTACATGACGAAAGCTTTGTGG 59.502 43.478 18.30 12.16 0.00 4.17
528 542 4.732285 ACTACATGACGAAAGCTTTGTG 57.268 40.909 18.30 11.36 0.00 3.33
529 543 6.704493 TCTTTACTACATGACGAAAGCTTTGT 59.296 34.615 18.30 14.60 0.00 2.83
530 544 7.010023 GTCTTTACTACATGACGAAAGCTTTG 58.990 38.462 18.30 11.41 0.00 2.77
531 545 6.929606 AGTCTTTACTACATGACGAAAGCTTT 59.070 34.615 12.53 12.53 32.84 3.51
532 546 6.456501 AGTCTTTACTACATGACGAAAGCTT 58.543 36.000 0.00 0.00 32.84 3.74
533 547 6.026947 AGTCTTTACTACATGACGAAAGCT 57.973 37.500 0.00 3.31 32.84 3.74
534 548 6.145696 ACAAGTCTTTACTACATGACGAAAGC 59.854 38.462 0.00 1.30 33.75 3.51
535 549 7.639162 ACAAGTCTTTACTACATGACGAAAG 57.361 36.000 0.00 3.95 33.75 2.62
536 550 9.701098 AATACAAGTCTTTACTACATGACGAAA 57.299 29.630 0.00 0.00 33.75 3.46
537 551 9.701098 AAATACAAGTCTTTACTACATGACGAA 57.299 29.630 0.00 0.00 33.75 3.85
545 559 9.500864 CCGTCTCTAAATACAAGTCTTTACTAC 57.499 37.037 0.00 0.00 33.75 2.73
546 560 9.453572 TCCGTCTCTAAATACAAGTCTTTACTA 57.546 33.333 0.00 0.00 33.75 1.82
547 561 8.345724 TCCGTCTCTAAATACAAGTCTTTACT 57.654 34.615 0.00 0.00 37.65 2.24
548 562 8.457261 TCTCCGTCTCTAAATACAAGTCTTTAC 58.543 37.037 0.00 0.00 0.00 2.01
549 563 8.571461 TCTCCGTCTCTAAATACAAGTCTTTA 57.429 34.615 0.00 0.00 0.00 1.85
553 567 7.314393 ACTTTCTCCGTCTCTAAATACAAGTC 58.686 38.462 0.00 0.00 0.00 3.01
558 572 9.968870 AATCATACTTTCTCCGTCTCTAAATAC 57.031 33.333 0.00 0.00 0.00 1.89
590 604 4.286707 GAGGGCCCCAACTACAATTATTT 58.713 43.478 21.43 0.00 0.00 1.40
633 647 3.171388 ATAGGCCGGGCAGAAGGG 61.171 66.667 31.59 0.00 0.00 3.95
634 648 2.111878 CATAGGCCGGGCAGAAGG 59.888 66.667 31.59 12.98 0.00 3.46
635 649 2.111878 CCATAGGCCGGGCAGAAG 59.888 66.667 31.59 16.13 0.00 2.85
636 650 3.488569 CCCATAGGCCGGGCAGAA 61.489 66.667 31.59 15.57 36.72 3.02
746 761 3.497262 CGTTGGGTTTTAAGAGAGGACAC 59.503 47.826 0.00 0.00 0.00 3.67
773 788 1.418637 AGCGTGTTTTGGAAGAGGGTA 59.581 47.619 0.00 0.00 0.00 3.69
835 851 1.528586 CGCTTGATCTATTTCAGGGCG 59.471 52.381 0.00 8.56 40.40 6.13
1053 1073 4.758251 CACATGAGGACGCCGGCA 62.758 66.667 28.98 5.63 0.00 5.69
1118 1138 1.022735 TGAACTACGGAGAGCGGATC 58.977 55.000 0.00 0.00 0.00 3.36
1153 1173 0.387239 GCTCGTGCAACCAATGAACC 60.387 55.000 4.26 0.00 33.53 3.62
1167 1187 0.108992 TCGCAAATAACCGAGCTCGT 60.109 50.000 32.41 19.00 37.74 4.18
1191 1211 4.563061 CAACCGGCATATAGGTAGGTAAC 58.437 47.826 0.00 0.00 40.37 2.50
1292 1429 4.005650 ACAAGTATCTGCACCATTGACTG 58.994 43.478 0.00 0.00 0.00 3.51
1351 1488 5.700722 TGGTACGTATCAGTATCATCACC 57.299 43.478 3.91 0.00 33.23 4.02
1484 1622 1.202256 CGAGATAGTAGCAACCACGCA 60.202 52.381 0.00 0.00 0.00 5.24
1485 1623 1.478137 CGAGATAGTAGCAACCACGC 58.522 55.000 0.00 0.00 0.00 5.34
1486 1624 1.202256 TGCGAGATAGTAGCAACCACG 60.202 52.381 0.00 0.00 38.01 4.94
1487 1625 2.579207 TGCGAGATAGTAGCAACCAC 57.421 50.000 0.00 0.00 38.01 4.16
1488 1626 3.132111 TCAATGCGAGATAGTAGCAACCA 59.868 43.478 0.00 0.00 44.51 3.67
1490 1628 5.914085 ATTCAATGCGAGATAGTAGCAAC 57.086 39.130 0.00 0.00 44.51 4.17
1492 1630 6.283694 AGAAATTCAATGCGAGATAGTAGCA 58.716 36.000 0.00 0.00 45.46 3.49
1493 1631 6.644592 AGAGAAATTCAATGCGAGATAGTAGC 59.355 38.462 0.00 0.00 0.00 3.58
1494 1632 9.340695 CTAGAGAAATTCAATGCGAGATAGTAG 57.659 37.037 0.00 0.00 0.00 2.57
1495 1633 8.851145 ACTAGAGAAATTCAATGCGAGATAGTA 58.149 33.333 0.00 0.00 0.00 1.82
1496 1634 7.721402 ACTAGAGAAATTCAATGCGAGATAGT 58.279 34.615 0.00 0.00 0.00 2.12
1523 1661 3.611293 CGACTGGTAATTTGCATTGCACA 60.611 43.478 11.66 5.19 38.71 4.57
1658 1797 3.003378 CAGGCAATAGCACTGATCACATG 59.997 47.826 0.00 0.00 44.61 3.21
1674 1813 1.216122 GCAATTTCGCAAACAGGCAA 58.784 45.000 0.00 0.00 0.00 4.52
1676 1815 1.291184 GGGCAATTTCGCAAACAGGC 61.291 55.000 0.00 0.00 0.00 4.85
1728 1867 8.485578 AACCTCACCTATGTCCAAAATTTTAA 57.514 30.769 2.44 0.00 0.00 1.52
1730 1869 6.294508 CGAACCTCACCTATGTCCAAAATTTT 60.295 38.462 0.00 0.00 0.00 1.82
1747 1886 2.897326 TCAATCTCTCCAACGAACCTCA 59.103 45.455 0.00 0.00 0.00 3.86
1951 2134 4.811969 TCCGTGTACACATAATGACCTT 57.188 40.909 24.98 0.00 0.00 3.50
2035 2218 7.274603 AGGTACTAATACGAGAGTTGGATTC 57.725 40.000 0.00 0.00 41.92 2.52
2042 2225 5.071519 TCAGCCTAGGTACTAATACGAGAGT 59.928 44.000 11.31 0.00 45.23 3.24
2094 2314 4.336280 ACTTCAGAATTAGAGGGGCAAAC 58.664 43.478 0.00 0.00 0.00 2.93
2100 2320 4.822026 ACGACAACTTCAGAATTAGAGGG 58.178 43.478 0.00 0.00 0.00 4.30
2130 2350 9.677567 CCGAGAACAATTTCAAAAGATAAAAGA 57.322 29.630 0.00 0.00 33.72 2.52
2138 2358 7.873739 AAATAGCCGAGAACAATTTCAAAAG 57.126 32.000 0.00 0.00 33.72 2.27
2325 2570 5.227908 AGTGTGATAAGAACAGGTACAACG 58.772 41.667 0.00 0.00 0.00 4.10
2447 2699 4.229639 TGAAGAGGCCAGATATCATGACT 58.770 43.478 5.01 2.31 0.00 3.41
2575 2870 5.528870 TCAATCGATATGTACGCAGATGTT 58.471 37.500 0.00 0.00 0.00 2.71
2632 2938 6.929049 TCATCGTCAAGTCTGTCAAAAAGTAT 59.071 34.615 0.00 0.00 0.00 2.12
2641 2947 3.791973 AGGATCATCGTCAAGTCTGTC 57.208 47.619 0.00 0.00 0.00 3.51
2651 2957 4.074970 GGAAAATGCCATAGGATCATCGT 58.925 43.478 0.00 0.00 0.00 3.73
2714 3020 6.090763 CGCACATTAATCTTCTTCACACAGTA 59.909 38.462 0.00 0.00 0.00 2.74
2715 3021 5.106948 CGCACATTAATCTTCTTCACACAGT 60.107 40.000 0.00 0.00 0.00 3.55
2716 3022 5.106948 ACGCACATTAATCTTCTTCACACAG 60.107 40.000 0.00 0.00 0.00 3.66
2717 3023 4.754618 ACGCACATTAATCTTCTTCACACA 59.245 37.500 0.00 0.00 0.00 3.72
2718 3024 5.283060 ACGCACATTAATCTTCTTCACAC 57.717 39.130 0.00 0.00 0.00 3.82
2719 3025 5.688823 CAACGCACATTAATCTTCTTCACA 58.311 37.500 0.00 0.00 0.00 3.58
2720 3026 4.554973 GCAACGCACATTAATCTTCTTCAC 59.445 41.667 0.00 0.00 0.00 3.18
2736 3054 3.398406 TGATCAGTAAGAAAGCAACGCA 58.602 40.909 0.00 0.00 0.00 5.24
2738 3056 4.245660 TCCTGATCAGTAAGAAAGCAACG 58.754 43.478 21.11 1.51 0.00 4.10
2743 3061 7.659390 AGAAACAACTCCTGATCAGTAAGAAAG 59.341 37.037 21.11 13.83 0.00 2.62
2748 3066 8.367660 AGATAGAAACAACTCCTGATCAGTAA 57.632 34.615 21.11 8.27 0.00 2.24
2750 3068 6.865834 AGATAGAAACAACTCCTGATCAGT 57.134 37.500 21.11 0.79 0.00 3.41
2783 3134 1.078918 TCCGTGATGCAAGAGCTGG 60.079 57.895 0.00 0.00 42.74 4.85
2819 3170 2.426738 CCCACTGAACAAAGCAAGACAA 59.573 45.455 0.00 0.00 0.00 3.18
2861 3212 2.501723 GGCTTCAGTGAAGAGGACCATA 59.498 50.000 32.39 0.00 41.71 2.74
2942 3293 8.137437 AGAAACAACACATCTTAACCTGAATTG 58.863 33.333 0.00 0.00 0.00 2.32
3149 3502 8.617290 ACACCGAAACTAACTAGATTTTTGAT 57.383 30.769 0.00 0.00 0.00 2.57
3303 3656 9.944663 GTATCGAGCATATATTTTCCAACAAAA 57.055 29.630 0.00 0.00 0.00 2.44
3304 3657 8.279800 CGTATCGAGCATATATTTTCCAACAAA 58.720 33.333 0.00 0.00 0.00 2.83
3342 3698 7.714377 ACAATTGGCATTTTCATTTGACTTGTA 59.286 29.630 10.83 0.00 32.82 2.41
3374 3730 1.742880 GCATGGTCGCTGCTTCTGA 60.743 57.895 0.00 0.00 36.68 3.27
3378 3734 2.044650 ATGGCATGGTCGCTGCTT 60.045 55.556 0.00 0.00 39.60 3.91
3382 3738 2.619941 ATCAGCATGGCATGGTCGCT 62.620 55.000 27.90 16.12 39.29 4.93
3386 3742 0.184211 TAGCATCAGCATGGCATGGT 59.816 50.000 25.41 25.41 45.49 3.55
3389 3745 0.949397 CGTTAGCATCAGCATGGCAT 59.051 50.000 0.00 0.00 45.49 4.40
3390 3746 0.107752 TCGTTAGCATCAGCATGGCA 60.108 50.000 0.00 0.00 45.49 4.92
3391 3747 0.585357 CTCGTTAGCATCAGCATGGC 59.415 55.000 0.00 0.00 45.49 4.40
3392 3748 1.945387 ACTCGTTAGCATCAGCATGG 58.055 50.000 0.00 0.00 45.49 3.66
3393 3749 5.663795 ATTAACTCGTTAGCATCAGCATG 57.336 39.130 0.00 0.00 45.49 4.06
3394 3750 6.316140 TCAAATTAACTCGTTAGCATCAGCAT 59.684 34.615 0.00 0.00 45.49 3.79
3395 3751 5.641636 TCAAATTAACTCGTTAGCATCAGCA 59.358 36.000 0.00 0.00 45.49 4.41
3396 3752 6.106877 TCAAATTAACTCGTTAGCATCAGC 57.893 37.500 0.00 0.00 42.56 4.26
3397 3753 6.684555 GCTTCAAATTAACTCGTTAGCATCAG 59.315 38.462 0.00 0.00 0.00 2.90
3398 3754 6.148645 TGCTTCAAATTAACTCGTTAGCATCA 59.851 34.615 0.00 0.00 0.00 3.07
3399 3755 6.542852 TGCTTCAAATTAACTCGTTAGCATC 58.457 36.000 0.00 0.00 0.00 3.91
3407 3763 6.857964 AGTCACAAATGCTTCAAATTAACTCG 59.142 34.615 0.00 0.00 0.00 4.18
3449 3805 9.626045 CCAGAGTAAAAAGGACAATGAATAAAC 57.374 33.333 0.00 0.00 0.00 2.01
3460 3816 6.016610 TGTGTTAATGCCAGAGTAAAAAGGAC 60.017 38.462 0.00 0.00 0.00 3.85
3465 3821 7.759489 AAGATGTGTTAATGCCAGAGTAAAA 57.241 32.000 0.00 0.00 0.00 1.52
3661 4168 7.277319 TCAATCGAATTGTCTGAATCTTCTGAG 59.723 37.037 0.00 0.00 41.02 3.35
3678 4185 3.915437 AGCAAACGGTTTCAATCGAAT 57.085 38.095 2.51 0.00 35.73 3.34
3698 4214 8.459521 CAAACCGTCTGAATTTTTGCAATATA 57.540 30.769 0.00 0.00 0.00 0.86
3699 4215 7.350110 CAAACCGTCTGAATTTTTGCAATAT 57.650 32.000 0.00 0.00 0.00 1.28
4008 4526 4.862350 TCGTCTCAAAATAAGTGTCGTGA 58.138 39.130 0.00 0.00 0.00 4.35
4030 4548 4.734398 TCAAACACCAACATGCTTTCTT 57.266 36.364 0.00 0.00 0.00 2.52
4033 4551 8.449251 AAATAAATCAAACACCAACATGCTTT 57.551 26.923 0.00 0.00 0.00 3.51
4072 4590 1.108776 CCACAATTCTCTGCATGGGG 58.891 55.000 0.00 0.00 0.00 4.96
4163 4683 1.002659 ACGATGATGGGTTGGTTTCGA 59.997 47.619 0.00 0.00 0.00 3.71
4200 4720 2.223272 GGCGAAGGAAAAAGGAATAGCG 60.223 50.000 0.00 0.00 0.00 4.26
4202 4722 3.063588 GTCGGCGAAGGAAAAAGGAATAG 59.936 47.826 12.92 0.00 0.00 1.73
4222 4742 1.929836 CTCTGCATAGCCTTTCACGTC 59.070 52.381 0.00 0.00 0.00 4.34
4251 4771 2.046023 TGGGAGTGCTTGATGCGG 60.046 61.111 0.00 0.00 46.63 5.69
4256 4776 0.320683 CACGATGTGGGAGTGCTTGA 60.321 55.000 0.00 0.00 0.00 3.02
4278 4798 2.022129 CACGTGACCGCTCAGTTCC 61.022 63.158 10.90 0.00 37.70 3.62
4281 4801 3.991051 CCCACGTGACCGCTCAGT 61.991 66.667 19.30 0.00 37.70 3.41
4374 4897 3.672447 TGCTTCCACGACGCGGTA 61.672 61.111 12.47 0.00 29.08 4.02
4433 4956 0.734253 CGACCAAGAACGGAGAGCAG 60.734 60.000 0.00 0.00 0.00 4.24
4498 5022 3.276846 GCGTGACGTGCAAACCCT 61.277 61.111 6.91 0.00 0.00 4.34
4547 5071 0.031857 TGGCGCATCCAGTTGTTTTG 59.968 50.000 10.83 0.00 40.72 2.44
4573 5099 1.210870 GTGCACGTGAAAGACCGTTA 58.789 50.000 22.23 0.00 34.59 3.18
4574 5100 1.433837 GGTGCACGTGAAAGACCGTT 61.434 55.000 22.23 0.00 34.59 4.44
4593 5119 4.213270 TCAAGCACGAGGAAAACAATAGTG 59.787 41.667 0.00 0.00 0.00 2.74
4594 5120 4.385825 TCAAGCACGAGGAAAACAATAGT 58.614 39.130 0.00 0.00 0.00 2.12
4614 5140 3.996150 AGTACGTTTTCTTCGACCTCA 57.004 42.857 0.00 0.00 0.00 3.86
4616 5142 4.759183 AGAGTAGTACGTTTTCTTCGACCT 59.241 41.667 0.00 0.00 0.00 3.85
4657 5183 8.243426 GCACTAAATACATTCATTTGAAGGACA 58.757 33.333 11.51 0.33 37.99 4.02
4658 5184 8.462016 AGCACTAAATACATTCATTTGAAGGAC 58.538 33.333 11.51 0.00 37.99 3.85
4659 5185 8.579850 AGCACTAAATACATTCATTTGAAGGA 57.420 30.769 11.51 0.00 37.99 3.36
4660 5186 9.941664 CTAGCACTAAATACATTCATTTGAAGG 57.058 33.333 3.59 3.59 41.16 3.46
4677 5203 9.778741 CCCTTAAATGAATGTATCTAGCACTAA 57.221 33.333 0.00 0.00 0.00 2.24
4678 5204 9.154632 TCCCTTAAATGAATGTATCTAGCACTA 57.845 33.333 0.00 0.00 0.00 2.74
4679 5205 7.934120 GTCCCTTAAATGAATGTATCTAGCACT 59.066 37.037 0.00 0.00 0.00 4.40
4680 5206 7.715249 TGTCCCTTAAATGAATGTATCTAGCAC 59.285 37.037 0.00 0.00 0.00 4.40
4681 5207 7.801104 TGTCCCTTAAATGAATGTATCTAGCA 58.199 34.615 0.00 0.00 0.00 3.49
4682 5208 8.677148 TTGTCCCTTAAATGAATGTATCTAGC 57.323 34.615 0.00 0.00 0.00 3.42
4685 5211 9.927081 AAGATTGTCCCTTAAATGAATGTATCT 57.073 29.630 0.00 0.00 0.00 1.98
4686 5212 9.956720 CAAGATTGTCCCTTAAATGAATGTATC 57.043 33.333 0.00 0.00 0.00 2.24
4687 5213 8.917088 CCAAGATTGTCCCTTAAATGAATGTAT 58.083 33.333 0.00 0.00 0.00 2.29
4688 5214 7.341769 CCCAAGATTGTCCCTTAAATGAATGTA 59.658 37.037 0.00 0.00 0.00 2.29
4689 5215 6.155049 CCCAAGATTGTCCCTTAAATGAATGT 59.845 38.462 0.00 0.00 0.00 2.71
4690 5216 6.380846 TCCCAAGATTGTCCCTTAAATGAATG 59.619 38.462 0.00 0.00 0.00 2.67
4691 5217 6.381133 GTCCCAAGATTGTCCCTTAAATGAAT 59.619 38.462 0.00 0.00 0.00 2.57
4692 5218 5.714806 GTCCCAAGATTGTCCCTTAAATGAA 59.285 40.000 0.00 0.00 0.00 2.57
4693 5219 5.222233 TGTCCCAAGATTGTCCCTTAAATGA 60.222 40.000 0.00 0.00 0.00 2.57
4694 5220 5.016173 TGTCCCAAGATTGTCCCTTAAATG 58.984 41.667 0.00 0.00 0.00 2.32
4695 5221 5.269554 TGTCCCAAGATTGTCCCTTAAAT 57.730 39.130 0.00 0.00 0.00 1.40
4696 5222 4.733077 TGTCCCAAGATTGTCCCTTAAA 57.267 40.909 0.00 0.00 0.00 1.52
4697 5223 4.105697 ACTTGTCCCAAGATTGTCCCTTAA 59.894 41.667 10.73 0.00 0.00 1.85
4698 5224 3.655777 ACTTGTCCCAAGATTGTCCCTTA 59.344 43.478 10.73 0.00 0.00 2.69
4699 5225 2.447047 ACTTGTCCCAAGATTGTCCCTT 59.553 45.455 10.73 0.00 0.00 3.95
4700 5226 2.065799 ACTTGTCCCAAGATTGTCCCT 58.934 47.619 10.73 0.00 0.00 4.20
4701 5227 2.586648 ACTTGTCCCAAGATTGTCCC 57.413 50.000 10.73 0.00 0.00 4.46
4702 5228 4.584743 AGAAAACTTGTCCCAAGATTGTCC 59.415 41.667 10.73 0.38 0.00 4.02
4703 5229 5.560953 CGAGAAAACTTGTCCCAAGATTGTC 60.561 44.000 10.73 10.87 0.00 3.18
4704 5230 4.275936 CGAGAAAACTTGTCCCAAGATTGT 59.724 41.667 10.73 4.37 0.00 2.71
4705 5231 4.320494 CCGAGAAAACTTGTCCCAAGATTG 60.320 45.833 10.73 0.00 0.00 2.67
4706 5232 3.821033 CCGAGAAAACTTGTCCCAAGATT 59.179 43.478 10.73 2.62 0.00 2.40
4707 5233 3.072476 TCCGAGAAAACTTGTCCCAAGAT 59.928 43.478 10.73 0.00 0.00 2.40
4708 5234 2.436542 TCCGAGAAAACTTGTCCCAAGA 59.563 45.455 10.73 0.00 0.00 3.02
4709 5235 2.548480 GTCCGAGAAAACTTGTCCCAAG 59.452 50.000 2.54 2.54 0.00 3.61
4710 5236 2.567985 GTCCGAGAAAACTTGTCCCAA 58.432 47.619 0.00 0.00 0.00 4.12
4711 5237 1.539496 CGTCCGAGAAAACTTGTCCCA 60.539 52.381 0.00 0.00 0.00 4.37
4712 5238 1.145803 CGTCCGAGAAAACTTGTCCC 58.854 55.000 0.00 0.00 0.00 4.46
4713 5239 1.145803 CCGTCCGAGAAAACTTGTCC 58.854 55.000 0.00 0.00 0.00 4.02
4714 5240 2.144482 TCCGTCCGAGAAAACTTGTC 57.856 50.000 0.00 0.00 0.00 3.18
4715 5241 2.480845 CTTCCGTCCGAGAAAACTTGT 58.519 47.619 0.00 0.00 0.00 3.16
4716 5242 1.798813 CCTTCCGTCCGAGAAAACTTG 59.201 52.381 0.00 0.00 0.00 3.16
4717 5243 1.690352 TCCTTCCGTCCGAGAAAACTT 59.310 47.619 0.00 0.00 0.00 2.66
4718 5244 1.272769 CTCCTTCCGTCCGAGAAAACT 59.727 52.381 0.00 0.00 0.00 2.66
4719 5245 1.000618 ACTCCTTCCGTCCGAGAAAAC 59.999 52.381 0.00 0.00 0.00 2.43
4720 5246 1.335145 ACTCCTTCCGTCCGAGAAAA 58.665 50.000 0.00 0.00 0.00 2.29
4721 5247 1.815003 GTACTCCTTCCGTCCGAGAAA 59.185 52.381 0.00 0.00 0.00 2.52
4722 5248 1.457346 GTACTCCTTCCGTCCGAGAA 58.543 55.000 0.00 0.00 0.00 2.87
4723 5249 0.393537 GGTACTCCTTCCGTCCGAGA 60.394 60.000 0.00 0.00 0.00 4.04
4724 5250 0.394080 AGGTACTCCTTCCGTCCGAG 60.394 60.000 0.00 0.00 42.12 4.63
4725 5251 0.679002 CAGGTACTCCTTCCGTCCGA 60.679 60.000 0.00 0.00 43.07 4.55
4726 5252 1.807886 CAGGTACTCCTTCCGTCCG 59.192 63.158 0.00 0.00 43.07 4.79
4727 5253 0.971447 AGCAGGTACTCCTTCCGTCC 60.971 60.000 0.00 0.00 43.07 4.79
4728 5254 0.896226 AAGCAGGTACTCCTTCCGTC 59.104 55.000 0.00 0.00 43.07 4.79
4729 5255 0.608640 CAAGCAGGTACTCCTTCCGT 59.391 55.000 0.00 0.00 43.07 4.69
4730 5256 0.108138 CCAAGCAGGTACTCCTTCCG 60.108 60.000 0.00 0.00 43.07 4.30
4731 5257 3.863407 CCAAGCAGGTACTCCTTCC 57.137 57.895 0.00 0.00 43.07 3.46
4776 5302 7.302350 ACTTTAATTTGGTGAAAAGTGCAAC 57.698 32.000 0.00 0.00 39.89 4.17
4777 5303 7.625185 GCAACTTTAATTTGGTGAAAAGTGCAA 60.625 33.333 3.22 0.00 40.35 4.08
4778 5304 6.183360 GCAACTTTAATTTGGTGAAAAGTGCA 60.183 34.615 3.22 0.00 40.35 4.57
4779 5305 6.037062 AGCAACTTTAATTTGGTGAAAAGTGC 59.963 34.615 3.22 8.23 40.35 4.40
4780 5306 7.277539 TGAGCAACTTTAATTTGGTGAAAAGTG 59.722 33.333 4.55 0.85 40.35 3.16
4781 5307 7.327214 TGAGCAACTTTAATTTGGTGAAAAGT 58.673 30.769 4.55 0.00 42.40 2.66
4782 5308 7.042523 CCTGAGCAACTTTAATTTGGTGAAAAG 60.043 37.037 4.55 0.00 34.87 2.27
4783 5309 6.760770 CCTGAGCAACTTTAATTTGGTGAAAA 59.239 34.615 4.55 0.00 34.87 2.29
4784 5310 6.279882 CCTGAGCAACTTTAATTTGGTGAAA 58.720 36.000 4.55 0.00 34.87 2.69
4785 5311 5.221422 CCCTGAGCAACTTTAATTTGGTGAA 60.221 40.000 4.55 0.00 34.87 3.18
4786 5312 4.280677 CCCTGAGCAACTTTAATTTGGTGA 59.719 41.667 4.55 0.00 34.87 4.02
4787 5313 4.559153 CCCTGAGCAACTTTAATTTGGTG 58.441 43.478 4.55 0.00 34.87 4.17
4788 5314 3.006859 GCCCTGAGCAACTTTAATTTGGT 59.993 43.478 0.00 0.00 42.97 3.67
4789 5315 3.588955 GCCCTGAGCAACTTTAATTTGG 58.411 45.455 0.00 0.00 42.97 3.28
4825 5351 3.958147 ATGTCTTGGTCGCTGGCCG 62.958 63.158 0.00 0.00 38.61 6.13
4826 5352 2.045926 ATGTCTTGGTCGCTGGCC 60.046 61.111 0.00 0.00 0.00 5.36
4827 5353 2.401766 CCATGTCTTGGTCGCTGGC 61.402 63.158 0.00 0.00 40.99 4.85
4828 5354 1.746615 CCCATGTCTTGGTCGCTGG 60.747 63.158 4.19 0.00 44.83 4.85
4829 5355 2.401766 GCCCATGTCTTGGTCGCTG 61.402 63.158 4.19 0.00 44.83 5.18
4830 5356 2.045926 GCCCATGTCTTGGTCGCT 60.046 61.111 4.19 0.00 44.83 4.93
4831 5357 1.750399 ATGCCCATGTCTTGGTCGC 60.750 57.895 4.19 2.27 44.83 5.19
4832 5358 1.378882 CCATGCCCATGTCTTGGTCG 61.379 60.000 7.42 0.00 44.83 4.79
4833 5359 0.034186 TCCATGCCCATGTCTTGGTC 60.034 55.000 7.42 0.00 44.83 4.02
4834 5360 0.323725 GTCCATGCCCATGTCTTGGT 60.324 55.000 7.42 0.00 44.83 3.67
4835 5361 0.033796 AGTCCATGCCCATGTCTTGG 60.034 55.000 7.42 9.51 46.00 3.61
4836 5362 1.386533 GAGTCCATGCCCATGTCTTG 58.613 55.000 7.42 0.00 37.11 3.02
4837 5363 0.257039 GGAGTCCATGCCCATGTCTT 59.743 55.000 3.60 0.00 37.11 3.01
4838 5364 1.639635 GGGAGTCCATGCCCATGTCT 61.640 60.000 12.30 5.49 44.07 3.41
4839 5365 1.152881 GGGAGTCCATGCCCATGTC 60.153 63.158 12.30 0.00 44.07 3.06
4840 5366 3.010144 GGGAGTCCATGCCCATGT 58.990 61.111 12.30 0.00 44.07 3.21
4844 5370 3.415087 AGCTGGGAGTCCATGCCC 61.415 66.667 18.31 0.00 43.11 5.36
4845 5371 2.124403 CAGCTGGGAGTCCATGCC 60.124 66.667 18.31 0.00 43.11 4.40
4846 5372 2.124403 CCAGCTGGGAGTCCATGC 60.124 66.667 26.14 14.08 43.11 4.06
4856 5382 2.674380 GGCTTCACACCCAGCTGG 60.674 66.667 26.87 26.87 36.20 4.85
4857 5383 3.052082 CGGCTTCACACCCAGCTG 61.052 66.667 6.78 6.78 36.20 4.24
4858 5384 3.560251 ACGGCTTCACACCCAGCT 61.560 61.111 0.00 0.00 36.20 4.24
4859 5385 3.357079 CACGGCTTCACACCCAGC 61.357 66.667 0.00 0.00 35.07 4.85
4860 5386 3.357079 GCACGGCTTCACACCCAG 61.357 66.667 0.00 0.00 0.00 4.45
4862 5388 4.980805 TCGCACGGCTTCACACCC 62.981 66.667 0.00 0.00 0.00 4.61
4863 5389 3.414700 CTCGCACGGCTTCACACC 61.415 66.667 0.00 0.00 0.00 4.16
4864 5390 2.355837 TCTCGCACGGCTTCACAC 60.356 61.111 0.00 0.00 0.00 3.82
4865 5391 2.355837 GTCTCGCACGGCTTCACA 60.356 61.111 0.00 0.00 0.00 3.58
4866 5392 2.355837 TGTCTCGCACGGCTTCAC 60.356 61.111 0.00 0.00 0.00 3.18
4867 5393 2.049156 CTGTCTCGCACGGCTTCA 60.049 61.111 0.00 0.00 0.00 3.02
4872 5398 4.700365 TGTCGCTGTCTCGCACGG 62.700 66.667 0.00 0.00 0.00 4.94
4873 5399 3.168604 CTGTCGCTGTCTCGCACG 61.169 66.667 0.00 0.00 0.00 5.34
4874 5400 2.807045 CCTGTCGCTGTCTCGCAC 60.807 66.667 0.00 0.00 0.00 5.34
4875 5401 4.056125 CCCTGTCGCTGTCTCGCA 62.056 66.667 0.00 0.00 0.00 5.10
4876 5402 4.803426 CCCCTGTCGCTGTCTCGC 62.803 72.222 0.00 0.00 0.00 5.03
4877 5403 3.057547 CTCCCCTGTCGCTGTCTCG 62.058 68.421 0.00 0.00 0.00 4.04
4878 5404 2.716017 CCTCCCCTGTCGCTGTCTC 61.716 68.421 0.00 0.00 0.00 3.36
4879 5405 2.681778 CCTCCCCTGTCGCTGTCT 60.682 66.667 0.00 0.00 0.00 3.41
4880 5406 4.459089 GCCTCCCCTGTCGCTGTC 62.459 72.222 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.