Multiple sequence alignment - TraesCS3D01G333700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G333700 chr3D 100.000 3906 0 0 1 3906 445739795 445735890 0.000000e+00 7214.0
1 TraesCS3D01G333700 chr3D 97.887 142 3 0 3765 3906 31385080 31385221 3.010000e-61 246.0
2 TraesCS3D01G333700 chr3A 94.310 3304 91 41 347 3585 587553890 587550619 0.000000e+00 4970.0
3 TraesCS3D01G333700 chr3A 85.714 308 41 3 8 313 725960138 725960444 4.870000e-84 322.0
4 TraesCS3D01G333700 chr3B 94.458 3284 83 45 347 3585 584577743 584574514 0.000000e+00 4964.0
5 TraesCS3D01G333700 chr3B 75.728 309 68 7 9 313 257824548 257824853 8.740000e-32 148.0
6 TraesCS3D01G333700 chr3B 89.535 86 9 0 3607 3692 584574525 584574440 4.130000e-20 110.0
7 TraesCS3D01G333700 chr1D 79.685 1526 274 32 1383 2894 401565547 401564044 0.000000e+00 1068.0
8 TraesCS3D01G333700 chr1D 84.158 101 15 1 3696 3796 25461220 25461121 3.210000e-16 97.1
9 TraesCS3D01G333700 chr1A 80.270 1110 211 8 1383 2488 497498322 497497217 0.000000e+00 830.0
10 TraesCS3D01G333700 chr1A 87.919 298 34 2 2598 2894 497497127 497496831 2.230000e-92 350.0
11 TraesCS3D01G333700 chr1B 79.892 1109 217 6 1383 2488 539482147 539481042 0.000000e+00 808.0
12 TraesCS3D01G333700 chr1B 87.248 298 36 2 2598 2894 539480960 539480664 4.830000e-89 339.0
13 TraesCS3D01G333700 chr1B 75.806 310 70 3 12 317 297730020 297729712 6.760000e-33 152.0
14 TraesCS3D01G333700 chr7D 92.557 309 23 0 3 311 126057082 126057390 9.960000e-121 444.0
15 TraesCS3D01G333700 chr7D 95.808 167 6 1 3697 3863 16312680 16312845 6.430000e-68 268.0
16 TraesCS3D01G333700 chr7D 78.033 305 64 3 10 313 479108295 479108597 5.150000e-44 189.0
17 TraesCS3D01G333700 chr7D 90.385 52 5 0 6 57 43232444 43232495 7.000000e-08 69.4
18 TraesCS3D01G333700 chr5A 83.974 312 49 1 8 319 648501082 648501392 8.200000e-77 298.0
19 TraesCS3D01G333700 chr5D 98.052 154 3 0 3753 3906 556447581 556447428 6.430000e-68 268.0
20 TraesCS3D01G333700 chr7B 77.170 311 66 5 6 313 64390946 64391254 4.010000e-40 176.0
21 TraesCS3D01G333700 chr5B 76.066 305 67 6 12 313 671593624 671593323 1.880000e-33 154.0
22 TraesCS3D01G333700 chr6D 89.362 47 2 1 1149 1192 391563091 391563137 5.450000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G333700 chr3D 445735890 445739795 3905 True 7214.0 7214 100.0000 1 3906 1 chr3D.!!$R1 3905
1 TraesCS3D01G333700 chr3A 587550619 587553890 3271 True 4970.0 4970 94.3100 347 3585 1 chr3A.!!$R1 3238
2 TraesCS3D01G333700 chr3B 584574440 584577743 3303 True 2537.0 4964 91.9965 347 3692 2 chr3B.!!$R1 3345
3 TraesCS3D01G333700 chr1D 401564044 401565547 1503 True 1068.0 1068 79.6850 1383 2894 1 chr1D.!!$R2 1511
4 TraesCS3D01G333700 chr1A 497496831 497498322 1491 True 590.0 830 84.0945 1383 2894 2 chr1A.!!$R1 1511
5 TraesCS3D01G333700 chr1B 539480664 539482147 1483 True 573.5 808 83.5700 1383 2894 2 chr1B.!!$R2 1511

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
65 66 0.029300 GCTGCAGCAACGAACAAAGA 59.971 50.0 33.36 0.00 41.59 2.52 F
198 199 0.032416 GCTAGAGTAGGGGTGGGTGA 60.032 60.0 0.00 0.00 0.00 4.02 F
332 333 0.036294 GAAGAAGAGGGTTCGGGGTG 60.036 60.0 0.00 0.00 0.00 4.61 F
339 340 0.043637 AGGGTTCGGGGTGATCCTAA 59.956 55.0 0.00 0.00 36.78 2.69 F
2498 2546 0.103755 GCCGGGTAAGCTACTACCAC 59.896 60.0 15.05 5.35 42.86 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1349 1393 2.251963 TGCAAACATGCAGACGCG 59.748 55.556 3.53 3.53 42.97 6.01 R
1404 1452 4.760047 ATGCCGTCCTGCCACGAC 62.760 66.667 0.00 0.00 42.69 4.34 R
2509 2557 9.817809 CAGCTTAGTAGTTCCATCAAATTAGTA 57.182 33.333 0.00 0.00 0.00 1.82 R
2518 2566 3.249559 GCATGCAGCTTAGTAGTTCCATC 59.750 47.826 14.21 0.00 41.15 3.51 R
3724 3817 0.167470 ATACCGTATCGATGGACGCG 59.833 55.000 13.92 3.53 42.26 6.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.350522 CACAGAAGGTACATGTGGAGC 58.649 52.381 9.11 0.00 40.47 4.70
21 22 2.027745 CACAGAAGGTACATGTGGAGCT 60.028 50.000 9.11 0.92 40.47 4.09
22 23 3.195610 CACAGAAGGTACATGTGGAGCTA 59.804 47.826 9.11 0.00 40.47 3.32
23 24 3.449018 ACAGAAGGTACATGTGGAGCTAG 59.551 47.826 9.11 1.57 0.00 3.42
24 25 3.701542 CAGAAGGTACATGTGGAGCTAGA 59.298 47.826 9.11 0.00 0.00 2.43
25 26 4.343526 CAGAAGGTACATGTGGAGCTAGAT 59.656 45.833 9.11 0.00 0.00 1.98
26 27 4.965532 AGAAGGTACATGTGGAGCTAGATT 59.034 41.667 9.11 0.00 0.00 2.40
27 28 4.946478 AGGTACATGTGGAGCTAGATTC 57.054 45.455 9.11 0.00 0.00 2.52
28 29 4.551671 AGGTACATGTGGAGCTAGATTCT 58.448 43.478 9.11 0.00 0.00 2.40
29 30 4.586841 AGGTACATGTGGAGCTAGATTCTC 59.413 45.833 9.11 0.00 0.00 2.87
30 31 4.342378 GGTACATGTGGAGCTAGATTCTCA 59.658 45.833 9.11 0.00 32.38 3.27
31 32 5.163405 GGTACATGTGGAGCTAGATTCTCAA 60.163 44.000 9.11 0.00 32.38 3.02
32 33 5.021033 ACATGTGGAGCTAGATTCTCAAG 57.979 43.478 0.00 0.00 32.38 3.02
33 34 4.141756 ACATGTGGAGCTAGATTCTCAAGG 60.142 45.833 0.00 0.00 32.38 3.61
34 35 3.445008 TGTGGAGCTAGATTCTCAAGGT 58.555 45.455 0.00 0.00 32.38 3.50
35 36 3.196469 TGTGGAGCTAGATTCTCAAGGTG 59.804 47.826 0.00 0.00 32.38 4.00
36 37 3.196685 GTGGAGCTAGATTCTCAAGGTGT 59.803 47.826 0.00 0.00 32.38 4.16
37 38 3.196469 TGGAGCTAGATTCTCAAGGTGTG 59.804 47.826 0.00 0.00 32.38 3.82
38 39 3.431486 GGAGCTAGATTCTCAAGGTGTGG 60.431 52.174 0.00 0.00 32.38 4.17
39 40 3.177228 AGCTAGATTCTCAAGGTGTGGT 58.823 45.455 0.00 0.00 0.00 4.16
40 41 3.055530 AGCTAGATTCTCAAGGTGTGGTG 60.056 47.826 0.00 0.00 0.00 4.17
41 42 2.191128 AGATTCTCAAGGTGTGGTGC 57.809 50.000 0.00 0.00 0.00 5.01
42 43 1.421268 AGATTCTCAAGGTGTGGTGCA 59.579 47.619 0.00 0.00 0.00 4.57
43 44 1.537202 GATTCTCAAGGTGTGGTGCAC 59.463 52.381 8.80 8.80 46.97 4.57
50 51 2.049802 GTGTGGTGCACATGCTGC 60.050 61.111 20.43 11.79 46.32 5.25
63 64 4.707988 GCTGCAGCAACGAACAAA 57.292 50.000 33.36 0.00 41.59 2.83
64 65 2.498892 GCTGCAGCAACGAACAAAG 58.501 52.632 33.36 0.00 41.59 2.77
65 66 0.029300 GCTGCAGCAACGAACAAAGA 59.971 50.000 33.36 0.00 41.59 2.52
66 67 1.533756 GCTGCAGCAACGAACAAAGAA 60.534 47.619 33.36 0.00 41.59 2.52
67 68 2.111756 CTGCAGCAACGAACAAAGAAC 58.888 47.619 0.00 0.00 0.00 3.01
68 69 1.202245 TGCAGCAACGAACAAAGAACC 60.202 47.619 0.00 0.00 0.00 3.62
69 70 1.065551 GCAGCAACGAACAAAGAACCT 59.934 47.619 0.00 0.00 0.00 3.50
70 71 2.719798 CAGCAACGAACAAAGAACCTG 58.280 47.619 0.00 0.00 0.00 4.00
71 72 2.097466 CAGCAACGAACAAAGAACCTGT 59.903 45.455 0.00 0.00 0.00 4.00
72 73 2.354821 AGCAACGAACAAAGAACCTGTC 59.645 45.455 0.00 0.00 0.00 3.51
73 74 2.096819 GCAACGAACAAAGAACCTGTCA 59.903 45.455 0.00 0.00 0.00 3.58
74 75 3.788797 GCAACGAACAAAGAACCTGTCAG 60.789 47.826 0.00 0.00 0.00 3.51
75 76 1.940613 ACGAACAAAGAACCTGTCAGC 59.059 47.619 0.00 0.00 0.00 4.26
76 77 1.939934 CGAACAAAGAACCTGTCAGCA 59.060 47.619 0.00 0.00 0.00 4.41
77 78 2.032549 CGAACAAAGAACCTGTCAGCAG 60.033 50.000 0.00 0.00 42.22 4.24
78 79 1.312815 ACAAAGAACCTGTCAGCAGC 58.687 50.000 0.00 0.00 41.26 5.25
79 80 1.311859 CAAAGAACCTGTCAGCAGCA 58.688 50.000 0.00 0.00 41.26 4.41
80 81 1.266175 CAAAGAACCTGTCAGCAGCAG 59.734 52.381 0.00 0.00 41.26 4.24
84 85 2.046507 CCTGTCAGCAGCAGGTCC 60.047 66.667 11.57 0.00 46.22 4.46
85 86 2.433838 CTGTCAGCAGCAGGTCCG 60.434 66.667 0.00 0.00 35.77 4.79
86 87 4.687215 TGTCAGCAGCAGGTCCGC 62.687 66.667 0.00 0.00 0.00 5.54
87 88 4.385405 GTCAGCAGCAGGTCCGCT 62.385 66.667 0.00 2.81 45.21 5.52
94 95 4.329545 GCAGGTCCGCTGGTGGAA 62.330 66.667 4.33 0.00 40.44 3.53
95 96 2.046892 CAGGTCCGCTGGTGGAAG 60.047 66.667 4.33 0.00 40.44 3.46
96 97 2.203788 AGGTCCGCTGGTGGAAGA 60.204 61.111 4.33 0.00 40.44 2.87
97 98 2.266055 GGTCCGCTGGTGGAAGAG 59.734 66.667 4.33 0.00 40.44 2.85
98 99 2.283529 GGTCCGCTGGTGGAAGAGA 61.284 63.158 4.33 0.00 40.44 3.10
99 100 1.617947 GGTCCGCTGGTGGAAGAGAT 61.618 60.000 4.33 0.00 40.44 2.75
100 101 0.250513 GTCCGCTGGTGGAAGAGATT 59.749 55.000 4.33 0.00 40.44 2.40
101 102 1.480954 GTCCGCTGGTGGAAGAGATTA 59.519 52.381 4.33 0.00 40.44 1.75
102 103 2.093658 GTCCGCTGGTGGAAGAGATTAA 60.094 50.000 4.33 0.00 40.44 1.40
103 104 2.168521 TCCGCTGGTGGAAGAGATTAAG 59.831 50.000 0.00 0.00 34.30 1.85
104 105 2.168521 CCGCTGGTGGAAGAGATTAAGA 59.831 50.000 0.00 0.00 0.00 2.10
105 106 3.452474 CGCTGGTGGAAGAGATTAAGAG 58.548 50.000 0.00 0.00 0.00 2.85
106 107 3.202097 GCTGGTGGAAGAGATTAAGAGC 58.798 50.000 0.00 0.00 0.00 4.09
107 108 3.118445 GCTGGTGGAAGAGATTAAGAGCT 60.118 47.826 0.00 0.00 0.00 4.09
108 109 4.625083 GCTGGTGGAAGAGATTAAGAGCTT 60.625 45.833 0.00 0.00 0.00 3.74
109 110 4.836825 TGGTGGAAGAGATTAAGAGCTTG 58.163 43.478 0.00 0.00 0.00 4.01
110 111 3.625313 GGTGGAAGAGATTAAGAGCTTGC 59.375 47.826 0.00 0.00 0.00 4.01
111 112 4.512484 GTGGAAGAGATTAAGAGCTTGCT 58.488 43.478 0.00 0.00 31.16 3.91
112 113 4.940654 GTGGAAGAGATTAAGAGCTTGCTT 59.059 41.667 0.00 0.00 31.16 3.91
113 114 6.109359 GTGGAAGAGATTAAGAGCTTGCTTA 58.891 40.000 0.00 0.00 31.16 3.09
114 115 6.595716 GTGGAAGAGATTAAGAGCTTGCTTAA 59.404 38.462 9.37 9.37 42.58 1.85
116 117 7.831193 TGGAAGAGATTAAGAGCTTGCTTAATT 59.169 33.333 17.10 10.10 45.94 1.40
117 118 8.341903 GGAAGAGATTAAGAGCTTGCTTAATTC 58.658 37.037 17.10 15.45 45.94 2.17
118 119 7.475771 AGAGATTAAGAGCTTGCTTAATTCG 57.524 36.000 17.10 0.00 45.94 3.34
119 120 7.044798 AGAGATTAAGAGCTTGCTTAATTCGT 58.955 34.615 17.10 8.81 45.94 3.85
120 121 7.550906 AGAGATTAAGAGCTTGCTTAATTCGTT 59.449 33.333 17.10 7.73 45.94 3.85
121 122 7.689299 AGATTAAGAGCTTGCTTAATTCGTTC 58.311 34.615 17.10 8.64 45.94 3.95
122 123 7.550906 AGATTAAGAGCTTGCTTAATTCGTTCT 59.449 33.333 17.10 10.21 45.94 3.01
123 124 5.538067 AAGAGCTTGCTTAATTCGTTCTC 57.462 39.130 0.00 0.00 0.00 2.87
124 125 4.826556 AGAGCTTGCTTAATTCGTTCTCT 58.173 39.130 0.00 0.00 0.00 3.10
125 126 4.629200 AGAGCTTGCTTAATTCGTTCTCTG 59.371 41.667 0.00 0.00 0.00 3.35
126 127 4.569943 AGCTTGCTTAATTCGTTCTCTGA 58.430 39.130 0.00 0.00 0.00 3.27
127 128 4.629200 AGCTTGCTTAATTCGTTCTCTGAG 59.371 41.667 0.00 0.00 0.00 3.35
128 129 4.390297 GCTTGCTTAATTCGTTCTCTGAGT 59.610 41.667 4.32 0.00 0.00 3.41
129 130 5.106908 GCTTGCTTAATTCGTTCTCTGAGTT 60.107 40.000 4.32 0.00 0.00 3.01
130 131 6.566753 GCTTGCTTAATTCGTTCTCTGAGTTT 60.567 38.462 4.32 0.00 0.00 2.66
131 132 7.360101 GCTTGCTTAATTCGTTCTCTGAGTTTA 60.360 37.037 4.32 0.00 0.00 2.01
132 133 7.582435 TGCTTAATTCGTTCTCTGAGTTTAG 57.418 36.000 4.32 0.00 0.00 1.85
133 134 6.590292 TGCTTAATTCGTTCTCTGAGTTTAGG 59.410 38.462 4.32 0.00 0.00 2.69
134 135 6.036191 GCTTAATTCGTTCTCTGAGTTTAGGG 59.964 42.308 4.32 0.00 0.00 3.53
135 136 5.485209 AATTCGTTCTCTGAGTTTAGGGT 57.515 39.130 4.32 0.00 0.00 4.34
136 137 3.936372 TCGTTCTCTGAGTTTAGGGTG 57.064 47.619 4.32 0.00 0.00 4.61
137 138 3.228453 TCGTTCTCTGAGTTTAGGGTGT 58.772 45.455 4.32 0.00 0.00 4.16
138 139 3.255149 TCGTTCTCTGAGTTTAGGGTGTC 59.745 47.826 4.32 0.00 0.00 3.67
139 140 3.576648 GTTCTCTGAGTTTAGGGTGTCG 58.423 50.000 4.32 0.00 0.00 4.35
140 141 2.872732 TCTCTGAGTTTAGGGTGTCGT 58.127 47.619 4.32 0.00 0.00 4.34
141 142 2.557056 TCTCTGAGTTTAGGGTGTCGTG 59.443 50.000 4.32 0.00 0.00 4.35
142 143 1.616865 TCTGAGTTTAGGGTGTCGTGG 59.383 52.381 0.00 0.00 0.00 4.94
143 144 0.682852 TGAGTTTAGGGTGTCGTGGG 59.317 55.000 0.00 0.00 0.00 4.61
144 145 0.683412 GAGTTTAGGGTGTCGTGGGT 59.317 55.000 0.00 0.00 0.00 4.51
145 146 1.071228 GAGTTTAGGGTGTCGTGGGTT 59.929 52.381 0.00 0.00 0.00 4.11
146 147 2.299867 GAGTTTAGGGTGTCGTGGGTTA 59.700 50.000 0.00 0.00 0.00 2.85
147 148 2.301009 AGTTTAGGGTGTCGTGGGTTAG 59.699 50.000 0.00 0.00 0.00 2.34
148 149 2.299867 GTTTAGGGTGTCGTGGGTTAGA 59.700 50.000 0.00 0.00 0.00 2.10
149 150 1.549203 TAGGGTGTCGTGGGTTAGAC 58.451 55.000 0.00 0.00 37.85 2.59
150 151 1.080298 GGGTGTCGTGGGTTAGACG 60.080 63.158 0.00 0.00 40.05 4.18
151 152 1.526575 GGGTGTCGTGGGTTAGACGA 61.527 60.000 0.00 0.00 43.32 4.20
152 153 0.529378 GGTGTCGTGGGTTAGACGAT 59.471 55.000 0.00 0.00 46.72 3.73
153 154 1.468736 GGTGTCGTGGGTTAGACGATC 60.469 57.143 0.00 0.00 46.72 3.69
154 155 1.471684 GTGTCGTGGGTTAGACGATCT 59.528 52.381 0.00 0.00 46.72 2.75
155 156 1.471287 TGTCGTGGGTTAGACGATCTG 59.529 52.381 0.00 0.00 46.72 2.90
156 157 0.454600 TCGTGGGTTAGACGATCTGC 59.545 55.000 0.00 0.00 40.79 4.26
157 158 0.172578 CGTGGGTTAGACGATCTGCA 59.827 55.000 0.00 0.00 39.21 4.41
158 159 1.403647 CGTGGGTTAGACGATCTGCAA 60.404 52.381 0.00 0.00 39.21 4.08
159 160 2.695359 GTGGGTTAGACGATCTGCAAA 58.305 47.619 0.00 0.00 0.00 3.68
160 161 3.270877 GTGGGTTAGACGATCTGCAAAT 58.729 45.455 0.00 0.00 0.00 2.32
161 162 3.063997 GTGGGTTAGACGATCTGCAAATG 59.936 47.826 0.00 0.00 0.00 2.32
162 163 3.270877 GGGTTAGACGATCTGCAAATGT 58.729 45.455 0.00 0.00 0.00 2.71
163 164 3.689649 GGGTTAGACGATCTGCAAATGTT 59.310 43.478 0.00 0.00 0.00 2.71
164 165 4.873827 GGGTTAGACGATCTGCAAATGTTA 59.126 41.667 0.00 0.00 0.00 2.41
165 166 5.220605 GGGTTAGACGATCTGCAAATGTTAC 60.221 44.000 0.00 0.00 0.00 2.50
166 167 5.220605 GGTTAGACGATCTGCAAATGTTACC 60.221 44.000 0.00 0.00 0.00 2.85
167 168 2.930040 AGACGATCTGCAAATGTTACCG 59.070 45.455 0.00 0.00 0.00 4.02
168 169 1.396996 ACGATCTGCAAATGTTACCGC 59.603 47.619 0.00 0.00 0.00 5.68
169 170 1.665679 CGATCTGCAAATGTTACCGCT 59.334 47.619 0.00 0.00 0.00 5.52
170 171 2.285834 CGATCTGCAAATGTTACCGCTC 60.286 50.000 0.00 0.00 0.00 5.03
171 172 2.177394 TCTGCAAATGTTACCGCTCA 57.823 45.000 0.00 0.00 0.00 4.26
172 173 2.710377 TCTGCAAATGTTACCGCTCAT 58.290 42.857 0.00 0.00 0.00 2.90
173 174 3.867857 TCTGCAAATGTTACCGCTCATA 58.132 40.909 0.00 0.00 0.00 2.15
174 175 3.621268 TCTGCAAATGTTACCGCTCATAC 59.379 43.478 0.00 0.00 0.00 2.39
175 176 3.339141 TGCAAATGTTACCGCTCATACA 58.661 40.909 0.00 0.00 0.00 2.29
176 177 3.944650 TGCAAATGTTACCGCTCATACAT 59.055 39.130 0.00 0.00 32.89 2.29
177 178 4.397730 TGCAAATGTTACCGCTCATACATT 59.602 37.500 0.00 0.00 41.55 2.71
178 179 5.105957 TGCAAATGTTACCGCTCATACATTT 60.106 36.000 0.00 0.00 46.46 2.32
180 181 4.552166 ATGTTACCGCTCATACATTTGC 57.448 40.909 0.00 0.00 0.00 3.68
181 182 3.605634 TGTTACCGCTCATACATTTGCT 58.394 40.909 0.00 0.00 0.00 3.91
182 183 4.760878 TGTTACCGCTCATACATTTGCTA 58.239 39.130 0.00 0.00 0.00 3.49
183 184 4.808895 TGTTACCGCTCATACATTTGCTAG 59.191 41.667 0.00 0.00 0.00 3.42
184 185 3.819564 ACCGCTCATACATTTGCTAGA 57.180 42.857 0.00 0.00 0.00 2.43
185 186 3.722147 ACCGCTCATACATTTGCTAGAG 58.278 45.455 0.00 0.00 0.00 2.43
186 187 3.133003 ACCGCTCATACATTTGCTAGAGT 59.867 43.478 0.00 0.00 0.00 3.24
187 188 4.341235 ACCGCTCATACATTTGCTAGAGTA 59.659 41.667 0.00 0.00 0.00 2.59
188 189 4.920340 CCGCTCATACATTTGCTAGAGTAG 59.080 45.833 0.00 0.00 0.00 2.57
189 190 4.920340 CGCTCATACATTTGCTAGAGTAGG 59.080 45.833 0.00 0.00 0.00 3.18
190 191 5.233988 GCTCATACATTTGCTAGAGTAGGG 58.766 45.833 0.00 0.00 0.00 3.53
191 192 5.788450 CTCATACATTTGCTAGAGTAGGGG 58.212 45.833 0.00 0.00 0.00 4.79
192 193 5.216622 TCATACATTTGCTAGAGTAGGGGT 58.783 41.667 0.00 0.00 0.00 4.95
193 194 3.914426 ACATTTGCTAGAGTAGGGGTG 57.086 47.619 0.00 0.00 0.00 4.61
194 195 2.505819 ACATTTGCTAGAGTAGGGGTGG 59.494 50.000 0.00 0.00 0.00 4.61
195 196 1.580059 TTTGCTAGAGTAGGGGTGGG 58.420 55.000 0.00 0.00 0.00 4.61
196 197 0.416231 TTGCTAGAGTAGGGGTGGGT 59.584 55.000 0.00 0.00 0.00 4.51
197 198 0.325296 TGCTAGAGTAGGGGTGGGTG 60.325 60.000 0.00 0.00 0.00 4.61
198 199 0.032416 GCTAGAGTAGGGGTGGGTGA 60.032 60.000 0.00 0.00 0.00 4.02
199 200 1.413227 GCTAGAGTAGGGGTGGGTGAT 60.413 57.143 0.00 0.00 0.00 3.06
200 201 2.158355 GCTAGAGTAGGGGTGGGTGATA 60.158 54.545 0.00 0.00 0.00 2.15
201 202 3.693359 GCTAGAGTAGGGGTGGGTGATAA 60.693 52.174 0.00 0.00 0.00 1.75
202 203 3.502051 AGAGTAGGGGTGGGTGATAAA 57.498 47.619 0.00 0.00 0.00 1.40
203 204 4.022359 AGAGTAGGGGTGGGTGATAAAT 57.978 45.455 0.00 0.00 0.00 1.40
204 205 4.380791 AGAGTAGGGGTGGGTGATAAATT 58.619 43.478 0.00 0.00 0.00 1.82
205 206 5.544682 AGAGTAGGGGTGGGTGATAAATTA 58.455 41.667 0.00 0.00 0.00 1.40
206 207 6.158260 AGAGTAGGGGTGGGTGATAAATTAT 58.842 40.000 0.00 0.00 0.00 1.28
207 208 6.044404 AGAGTAGGGGTGGGTGATAAATTATG 59.956 42.308 0.00 0.00 0.00 1.90
208 209 5.674958 AGTAGGGGTGGGTGATAAATTATGT 59.325 40.000 0.00 0.00 0.00 2.29
209 210 6.852908 AGTAGGGGTGGGTGATAAATTATGTA 59.147 38.462 0.00 0.00 0.00 2.29
210 211 6.599986 AGGGGTGGGTGATAAATTATGTAA 57.400 37.500 0.00 0.00 0.00 2.41
211 212 6.610830 AGGGGTGGGTGATAAATTATGTAAG 58.389 40.000 0.00 0.00 0.00 2.34
212 213 5.773176 GGGGTGGGTGATAAATTATGTAAGG 59.227 44.000 0.00 0.00 0.00 2.69
213 214 6.370453 GGGTGGGTGATAAATTATGTAAGGT 58.630 40.000 0.00 0.00 0.00 3.50
214 215 6.264518 GGGTGGGTGATAAATTATGTAAGGTG 59.735 42.308 0.00 0.00 0.00 4.00
215 216 6.831868 GGTGGGTGATAAATTATGTAAGGTGT 59.168 38.462 0.00 0.00 0.00 4.16
216 217 7.201785 GGTGGGTGATAAATTATGTAAGGTGTG 60.202 40.741 0.00 0.00 0.00 3.82
217 218 6.831353 TGGGTGATAAATTATGTAAGGTGTGG 59.169 38.462 0.00 0.00 0.00 4.17
218 219 6.831868 GGGTGATAAATTATGTAAGGTGTGGT 59.168 38.462 0.00 0.00 0.00 4.16
219 220 7.340999 GGGTGATAAATTATGTAAGGTGTGGTT 59.659 37.037 0.00 0.00 0.00 3.67
220 221 8.188139 GGTGATAAATTATGTAAGGTGTGGTTG 58.812 37.037 0.00 0.00 0.00 3.77
221 222 8.188139 GTGATAAATTATGTAAGGTGTGGTTGG 58.812 37.037 0.00 0.00 0.00 3.77
222 223 5.993748 AAATTATGTAAGGTGTGGTTGGG 57.006 39.130 0.00 0.00 0.00 4.12
223 224 4.668138 ATTATGTAAGGTGTGGTTGGGT 57.332 40.909 0.00 0.00 0.00 4.51
224 225 2.286365 ATGTAAGGTGTGGTTGGGTG 57.714 50.000 0.00 0.00 0.00 4.61
225 226 0.466555 TGTAAGGTGTGGTTGGGTGC 60.467 55.000 0.00 0.00 0.00 5.01
226 227 0.179001 GTAAGGTGTGGTTGGGTGCT 60.179 55.000 0.00 0.00 0.00 4.40
227 228 0.109723 TAAGGTGTGGTTGGGTGCTC 59.890 55.000 0.00 0.00 0.00 4.26
228 229 2.958578 AAGGTGTGGTTGGGTGCTCG 62.959 60.000 0.00 0.00 0.00 5.03
229 230 3.660111 GTGTGGTTGGGTGCTCGC 61.660 66.667 0.00 0.00 0.00 5.03
230 231 3.872603 TGTGGTTGGGTGCTCGCT 61.873 61.111 4.41 0.00 0.00 4.93
231 232 3.050275 GTGGTTGGGTGCTCGCTC 61.050 66.667 4.41 0.00 0.00 5.03
232 233 3.555324 TGGTTGGGTGCTCGCTCA 61.555 61.111 4.41 0.00 0.00 4.26
233 234 2.743928 GGTTGGGTGCTCGCTCAG 60.744 66.667 4.41 0.00 0.00 3.35
234 235 2.031163 GTTGGGTGCTCGCTCAGT 59.969 61.111 4.41 0.00 0.00 3.41
235 236 2.029844 GTTGGGTGCTCGCTCAGTC 61.030 63.158 4.41 0.00 0.00 3.51
236 237 2.210013 TTGGGTGCTCGCTCAGTCT 61.210 57.895 4.41 0.00 0.00 3.24
237 238 1.758440 TTGGGTGCTCGCTCAGTCTT 61.758 55.000 4.41 0.00 0.00 3.01
238 239 1.004440 GGGTGCTCGCTCAGTCTTT 60.004 57.895 0.00 0.00 0.00 2.52
239 240 1.294659 GGGTGCTCGCTCAGTCTTTG 61.295 60.000 0.00 0.00 0.00 2.77
240 241 0.601311 GGTGCTCGCTCAGTCTTTGT 60.601 55.000 0.00 0.00 0.00 2.83
241 242 1.221414 GTGCTCGCTCAGTCTTTGTT 58.779 50.000 0.00 0.00 0.00 2.83
242 243 1.193426 GTGCTCGCTCAGTCTTTGTTC 59.807 52.381 0.00 0.00 0.00 3.18
243 244 1.069204 TGCTCGCTCAGTCTTTGTTCT 59.931 47.619 0.00 0.00 0.00 3.01
244 245 2.139118 GCTCGCTCAGTCTTTGTTCTT 58.861 47.619 0.00 0.00 0.00 2.52
245 246 2.096516 GCTCGCTCAGTCTTTGTTCTTG 60.097 50.000 0.00 0.00 0.00 3.02
246 247 3.384668 CTCGCTCAGTCTTTGTTCTTGA 58.615 45.455 0.00 0.00 0.00 3.02
247 248 3.993081 CTCGCTCAGTCTTTGTTCTTGAT 59.007 43.478 0.00 0.00 0.00 2.57
248 249 3.742882 TCGCTCAGTCTTTGTTCTTGATG 59.257 43.478 0.00 0.00 0.00 3.07
249 250 3.496130 CGCTCAGTCTTTGTTCTTGATGT 59.504 43.478 0.00 0.00 0.00 3.06
250 251 4.024556 CGCTCAGTCTTTGTTCTTGATGTT 60.025 41.667 0.00 0.00 0.00 2.71
251 252 5.504665 CGCTCAGTCTTTGTTCTTGATGTTT 60.505 40.000 0.00 0.00 0.00 2.83
252 253 6.268566 GCTCAGTCTTTGTTCTTGATGTTTT 58.731 36.000 0.00 0.00 0.00 2.43
253 254 6.197842 GCTCAGTCTTTGTTCTTGATGTTTTG 59.802 38.462 0.00 0.00 0.00 2.44
254 255 7.156876 TCAGTCTTTGTTCTTGATGTTTTGT 57.843 32.000 0.00 0.00 0.00 2.83
255 256 7.250569 TCAGTCTTTGTTCTTGATGTTTTGTC 58.749 34.615 0.00 0.00 0.00 3.18
256 257 6.195244 CAGTCTTTGTTCTTGATGTTTTGTCG 59.805 38.462 0.00 0.00 0.00 4.35
257 258 5.455525 GTCTTTGTTCTTGATGTTTTGTCGG 59.544 40.000 0.00 0.00 0.00 4.79
258 259 5.355630 TCTTTGTTCTTGATGTTTTGTCGGA 59.644 36.000 0.00 0.00 0.00 4.55
259 260 5.766150 TTGTTCTTGATGTTTTGTCGGAT 57.234 34.783 0.00 0.00 0.00 4.18
260 261 5.107109 TGTTCTTGATGTTTTGTCGGATG 57.893 39.130 0.00 0.00 0.00 3.51
261 262 4.819088 TGTTCTTGATGTTTTGTCGGATGA 59.181 37.500 0.00 0.00 0.00 2.92
262 263 5.049474 TGTTCTTGATGTTTTGTCGGATGAG 60.049 40.000 0.00 0.00 0.00 2.90
263 264 4.893608 TCTTGATGTTTTGTCGGATGAGA 58.106 39.130 0.00 0.00 0.00 3.27
264 265 5.491070 TCTTGATGTTTTGTCGGATGAGAT 58.509 37.500 0.00 0.00 0.00 2.75
265 266 5.939883 TCTTGATGTTTTGTCGGATGAGATT 59.060 36.000 0.00 0.00 0.00 2.40
266 267 5.801350 TGATGTTTTGTCGGATGAGATTC 57.199 39.130 0.00 0.00 0.00 2.52
267 268 4.635765 TGATGTTTTGTCGGATGAGATTCC 59.364 41.667 0.00 0.00 0.00 3.01
277 278 2.860735 GGATGAGATTCCGAACTTCACG 59.139 50.000 0.00 0.00 0.00 4.35
278 279 3.428999 GGATGAGATTCCGAACTTCACGA 60.429 47.826 0.00 0.00 0.00 4.35
279 280 3.868757 TGAGATTCCGAACTTCACGAT 57.131 42.857 0.00 0.00 0.00 3.73
280 281 4.188247 TGAGATTCCGAACTTCACGATT 57.812 40.909 0.00 0.00 0.00 3.34
281 282 4.566004 TGAGATTCCGAACTTCACGATTT 58.434 39.130 0.00 0.00 0.00 2.17
282 283 5.716094 TGAGATTCCGAACTTCACGATTTA 58.284 37.500 0.00 0.00 0.00 1.40
283 284 6.160684 TGAGATTCCGAACTTCACGATTTAA 58.839 36.000 0.00 0.00 0.00 1.52
284 285 6.647481 TGAGATTCCGAACTTCACGATTTAAA 59.353 34.615 0.00 0.00 0.00 1.52
285 286 7.333423 TGAGATTCCGAACTTCACGATTTAAAT 59.667 33.333 0.00 0.00 0.00 1.40
286 287 8.712285 AGATTCCGAACTTCACGATTTAAATA 57.288 30.769 0.00 0.00 0.00 1.40
287 288 9.158233 AGATTCCGAACTTCACGATTTAAATAA 57.842 29.630 0.00 0.00 0.00 1.40
288 289 9.763465 GATTCCGAACTTCACGATTTAAATAAA 57.237 29.630 0.00 0.00 0.00 1.40
289 290 9.769093 ATTCCGAACTTCACGATTTAAATAAAG 57.231 29.630 0.00 5.79 0.00 1.85
290 291 7.238571 TCCGAACTTCACGATTTAAATAAAGC 58.761 34.615 0.00 0.00 0.00 3.51
301 302 7.346208 GATTTAAATAAAGCGGCAAGTTTGT 57.654 32.000 1.45 0.00 0.00 2.83
302 303 6.757026 TTTAAATAAAGCGGCAAGTTTGTC 57.243 33.333 1.45 0.00 0.00 3.18
303 304 3.297830 AATAAAGCGGCAAGTTTGTCC 57.702 42.857 1.45 0.00 0.00 4.02
304 305 0.955905 TAAAGCGGCAAGTTTGTCCC 59.044 50.000 1.45 0.00 0.00 4.46
305 306 0.755327 AAAGCGGCAAGTTTGTCCCT 60.755 50.000 1.45 0.00 0.00 4.20
306 307 0.109723 AAGCGGCAAGTTTGTCCCTA 59.890 50.000 1.45 0.00 0.00 3.53
307 308 0.109723 AGCGGCAAGTTTGTCCCTAA 59.890 50.000 1.45 0.00 0.00 2.69
308 309 0.955905 GCGGCAAGTTTGTCCCTAAA 59.044 50.000 0.00 0.00 0.00 1.85
309 310 1.338655 GCGGCAAGTTTGTCCCTAAAA 59.661 47.619 0.00 0.00 0.00 1.52
310 311 2.223852 GCGGCAAGTTTGTCCCTAAAAA 60.224 45.455 0.00 0.00 0.00 1.94
329 330 2.861147 AAAGAAGAAGAGGGTTCGGG 57.139 50.000 0.00 0.00 0.00 5.14
330 331 0.984995 AAGAAGAAGAGGGTTCGGGG 59.015 55.000 0.00 0.00 0.00 5.73
331 332 0.178900 AGAAGAAGAGGGTTCGGGGT 60.179 55.000 0.00 0.00 0.00 4.95
332 333 0.036294 GAAGAAGAGGGTTCGGGGTG 60.036 60.000 0.00 0.00 0.00 4.61
333 334 0.473117 AAGAAGAGGGTTCGGGGTGA 60.473 55.000 0.00 0.00 0.00 4.02
334 335 0.252742 AGAAGAGGGTTCGGGGTGAT 60.253 55.000 0.00 0.00 0.00 3.06
335 336 0.178301 GAAGAGGGTTCGGGGTGATC 59.822 60.000 0.00 0.00 0.00 2.92
336 337 1.272554 AAGAGGGTTCGGGGTGATCC 61.273 60.000 0.00 0.00 35.96 3.36
337 338 1.689582 GAGGGTTCGGGGTGATCCT 60.690 63.158 0.00 0.00 36.78 3.24
338 339 0.398098 GAGGGTTCGGGGTGATCCTA 60.398 60.000 0.00 0.00 36.78 2.94
339 340 0.043637 AGGGTTCGGGGTGATCCTAA 59.956 55.000 0.00 0.00 36.78 2.69
340 341 0.913924 GGGTTCGGGGTGATCCTAAA 59.086 55.000 0.00 0.00 36.78 1.85
341 342 1.282738 GGGTTCGGGGTGATCCTAAAA 59.717 52.381 0.00 0.00 36.78 1.52
342 343 2.291089 GGGTTCGGGGTGATCCTAAAAA 60.291 50.000 0.00 0.00 36.78 1.94
384 385 2.453983 GCAAAATGCAGCCCTTAACA 57.546 45.000 0.00 0.00 44.26 2.41
388 389 4.125703 CAAAATGCAGCCCTTAACAAACA 58.874 39.130 0.00 0.00 0.00 2.83
401 402 6.072728 CCCTTAACAAACAGATGATTTCGTGA 60.073 38.462 0.00 0.00 0.00 4.35
514 519 3.262420 CTGAACGTTAAGATCACAGGGG 58.738 50.000 6.86 0.00 0.00 4.79
537 542 3.244215 CGCACAGTATAGTTGGGATGGAT 60.244 47.826 0.00 0.00 0.00 3.41
569 575 2.369203 GGGTAGGCCAGATAGGAAGTTC 59.631 54.545 5.01 0.00 41.22 3.01
964 990 1.528292 GAGGGAGCGCATCTATCCGT 61.528 60.000 11.47 9.08 33.68 4.69
965 991 0.251209 AGGGAGCGCATCTATCCGTA 60.251 55.000 11.47 0.00 33.68 4.02
1291 1317 4.688413 CCTTCCGTTTCTTCTTCTTCTCTG 59.312 45.833 0.00 0.00 0.00 3.35
1294 1320 6.401047 TCCGTTTCTTCTTCTTCTCTGTTA 57.599 37.500 0.00 0.00 0.00 2.41
1295 1321 6.214399 TCCGTTTCTTCTTCTTCTCTGTTAC 58.786 40.000 0.00 0.00 0.00 2.50
1297 1323 7.230108 TCCGTTTCTTCTTCTTCTCTGTTACTA 59.770 37.037 0.00 0.00 0.00 1.82
1349 1393 3.483738 CGATCGATCATTCTGCATGCATC 60.484 47.826 22.97 13.66 32.13 3.91
1404 1452 1.227497 GATCCAGCAGAGGAAGGCG 60.227 63.158 0.00 0.00 41.92 5.52
2493 2541 3.846430 GCCGCCGGGTAAGCTACT 61.846 66.667 4.77 0.00 34.97 2.57
2494 2542 2.492773 GCCGCCGGGTAAGCTACTA 61.493 63.158 4.77 0.00 34.97 1.82
2495 2543 1.361632 CCGCCGGGTAAGCTACTAC 59.638 63.158 2.18 0.00 0.00 2.73
2496 2544 1.361632 CGCCGGGTAAGCTACTACC 59.638 63.158 2.18 6.10 40.69 3.18
2497 2545 1.386525 CGCCGGGTAAGCTACTACCA 61.387 60.000 15.05 0.00 42.86 3.25
2498 2546 0.103755 GCCGGGTAAGCTACTACCAC 59.896 60.000 15.05 5.35 42.86 4.16
2499 2547 1.772836 CCGGGTAAGCTACTACCACT 58.227 55.000 15.05 0.00 42.86 4.00
2500 2548 2.936202 CCGGGTAAGCTACTACCACTA 58.064 52.381 15.05 0.00 42.86 2.74
2501 2549 2.883386 CCGGGTAAGCTACTACCACTAG 59.117 54.545 15.05 4.87 42.86 2.57
2502 2550 3.549794 CGGGTAAGCTACTACCACTAGT 58.450 50.000 15.05 0.00 42.86 2.57
2503 2551 4.444876 CCGGGTAAGCTACTACCACTAGTA 60.445 50.000 15.05 0.00 42.86 1.82
2504 2552 5.126067 CGGGTAAGCTACTACCACTAGTAA 58.874 45.833 15.05 0.00 42.86 2.24
2505 2553 5.008118 CGGGTAAGCTACTACCACTAGTAAC 59.992 48.000 15.05 0.00 42.86 2.50
2506 2554 6.125719 GGGTAAGCTACTACCACTAGTAACT 58.874 44.000 15.05 0.00 42.86 2.24
2507 2555 7.283329 GGGTAAGCTACTACCACTAGTAACTA 58.717 42.308 15.05 0.00 42.86 2.24
2508 2556 7.443879 GGGTAAGCTACTACCACTAGTAACTAG 59.556 44.444 15.05 0.00 42.86 2.57
2509 2557 7.990314 GGTAAGCTACTACCACTAGTAACTAGT 59.010 40.741 9.37 3.52 46.75 2.57
2589 2641 1.067582 GACCGGACGATGGATGGAC 59.932 63.158 9.46 0.00 0.00 4.02
3129 3194 1.127343 CAACAAAAAGGGGGCCTCAA 58.873 50.000 5.99 0.00 30.89 3.02
3130 3195 1.070601 CAACAAAAAGGGGGCCTCAAG 59.929 52.381 5.99 0.00 30.89 3.02
3434 3506 6.737254 ATTAAAATCTGGTTCACTGTACCG 57.263 37.500 0.81 0.00 38.55 4.02
3457 3529 2.159310 TGCAAAACTGTCTTTGGGTTCG 60.159 45.455 13.42 0.00 36.89 3.95
3486 3568 4.496341 CCTGTCACAATGGATCGCAATAAC 60.496 45.833 0.00 0.00 0.00 1.89
3552 3645 6.677781 TGAACGAATCATAAACCTCAATCC 57.322 37.500 0.00 0.00 31.50 3.01
3559 3652 4.968259 TCATAAACCTCAATCCGTATGGG 58.032 43.478 0.00 0.00 35.24 4.00
3581 3674 3.790789 GCGAACACACCAAACTTGTAAGG 60.791 47.826 0.00 0.00 0.00 2.69
3585 3678 2.028876 ACACCAAACTTGTAAGGCACC 58.971 47.619 0.00 0.00 0.00 5.01
3586 3679 1.339929 CACCAAACTTGTAAGGCACCC 59.660 52.381 0.00 0.00 0.00 4.61
3587 3680 0.966179 CCAAACTTGTAAGGCACCCC 59.034 55.000 0.00 0.00 0.00 4.95
3588 3681 0.596082 CAAACTTGTAAGGCACCCCG 59.404 55.000 0.00 0.00 35.76 5.73
3589 3682 1.176619 AAACTTGTAAGGCACCCCGC 61.177 55.000 0.00 0.00 41.28 6.13
3590 3683 2.033448 CTTGTAAGGCACCCCGCA 59.967 61.111 0.00 0.00 45.17 5.69
3591 3684 1.602323 CTTGTAAGGCACCCCGCAA 60.602 57.895 0.00 0.00 45.17 4.85
3592 3685 1.152735 TTGTAAGGCACCCCGCAAA 60.153 52.632 0.00 0.00 45.17 3.68
3593 3686 0.755698 TTGTAAGGCACCCCGCAAAA 60.756 50.000 0.00 0.00 45.17 2.44
3594 3687 0.755698 TGTAAGGCACCCCGCAAAAA 60.756 50.000 0.00 0.00 45.17 1.94
3651 3744 3.740128 ATGGACTCCATGGCGTCGC 62.740 63.158 24.78 18.63 43.39 5.19
3652 3745 4.148825 GGACTCCATGGCGTCGCT 62.149 66.667 24.78 0.00 31.28 4.93
3665 3758 1.487482 CGTCGCTTGACAAGACTTCA 58.513 50.000 19.51 0.00 43.03 3.02
3667 3760 2.474816 GTCGCTTGACAAGACTTCAGT 58.525 47.619 19.51 0.00 42.41 3.41
3669 3762 4.238514 GTCGCTTGACAAGACTTCAGTAT 58.761 43.478 19.51 0.00 42.41 2.12
3671 3764 5.513495 GTCGCTTGACAAGACTTCAGTATAG 59.487 44.000 19.51 0.00 42.41 1.31
3685 3778 4.610333 TCAGTATAGCAGGAGAAGAACCA 58.390 43.478 0.00 0.00 0.00 3.67
3692 3785 4.353777 AGCAGGAGAAGAACCATAGTACA 58.646 43.478 0.00 0.00 0.00 2.90
3693 3786 4.965532 AGCAGGAGAAGAACCATAGTACAT 59.034 41.667 0.00 0.00 0.00 2.29
3694 3787 5.426833 AGCAGGAGAAGAACCATAGTACATT 59.573 40.000 0.00 0.00 0.00 2.71
3695 3788 6.069963 AGCAGGAGAAGAACCATAGTACATTT 60.070 38.462 0.00 0.00 0.00 2.32
3696 3789 7.125811 AGCAGGAGAAGAACCATAGTACATTTA 59.874 37.037 0.00 0.00 0.00 1.40
3697 3790 7.224949 GCAGGAGAAGAACCATAGTACATTTAC 59.775 40.741 0.00 0.00 0.00 2.01
3698 3791 8.478877 CAGGAGAAGAACCATAGTACATTTACT 58.521 37.037 0.00 0.00 41.69 2.24
3699 3792 9.710818 AGGAGAAGAACCATAGTACATTTACTA 57.289 33.333 1.33 1.33 43.54 1.82
3700 3793 9.968870 GGAGAAGAACCATAGTACATTTACTAG 57.031 37.037 5.10 0.00 42.82 2.57
3701 3794 9.465985 GAGAAGAACCATAGTACATTTACTAGC 57.534 37.037 5.10 0.00 42.82 3.42
3702 3795 8.136165 AGAAGAACCATAGTACATTTACTAGCG 58.864 37.037 5.10 0.71 42.82 4.26
3703 3796 7.344095 AGAACCATAGTACATTTACTAGCGT 57.656 36.000 5.10 1.24 42.82 5.07
3704 3797 8.455903 AGAACCATAGTACATTTACTAGCGTA 57.544 34.615 5.10 0.00 42.82 4.42
3705 3798 8.566260 AGAACCATAGTACATTTACTAGCGTAG 58.434 37.037 5.10 0.00 42.82 3.51
3706 3799 6.675987 ACCATAGTACATTTACTAGCGTAGC 58.324 40.000 5.10 0.00 46.71 3.58
3708 3801 4.581077 AGTACATTTACTAGCGTAGCCC 57.419 45.455 0.00 0.00 42.94 5.19
3709 3802 3.004106 AGTACATTTACTAGCGTAGCCCG 59.996 47.826 0.00 0.00 42.94 6.13
3710 3803 6.566491 AGTACATTTACTAGCGTAGCCCGC 62.566 50.000 10.14 10.14 45.58 6.13
3732 3825 3.195002 CGGCATTGTCGCGTCCAT 61.195 61.111 5.77 0.00 0.00 3.41
3733 3826 2.709475 GGCATTGTCGCGTCCATC 59.291 61.111 5.77 0.00 0.00 3.51
3734 3827 2.321060 GCATTGTCGCGTCCATCG 59.679 61.111 5.77 0.05 43.12 3.84
3735 3828 2.164663 GCATTGTCGCGTCCATCGA 61.165 57.895 5.77 0.00 42.86 3.59
3736 3829 1.490693 GCATTGTCGCGTCCATCGAT 61.491 55.000 5.77 0.00 42.86 3.59
3737 3830 1.766069 CATTGTCGCGTCCATCGATA 58.234 50.000 5.77 0.00 42.86 2.92
3738 3831 1.452025 CATTGTCGCGTCCATCGATAC 59.548 52.381 5.77 0.00 42.86 2.24
3739 3832 0.590481 TTGTCGCGTCCATCGATACG 60.590 55.000 14.83 14.83 42.86 3.06
3740 3833 1.724929 GTCGCGTCCATCGATACGG 60.725 63.158 19.29 8.87 42.86 4.02
3741 3834 2.182181 TCGCGTCCATCGATACGGT 61.182 57.895 19.29 0.00 42.86 4.83
3742 3835 0.879839 TCGCGTCCATCGATACGGTA 60.880 55.000 19.29 0.00 42.86 4.02
3743 3836 0.167470 CGCGTCCATCGATACGGTAT 59.833 55.000 19.29 0.00 42.86 2.73
3744 3837 1.614385 GCGTCCATCGATACGGTATG 58.386 55.000 19.29 6.14 42.86 2.39
3745 3838 1.068748 GCGTCCATCGATACGGTATGT 60.069 52.381 19.29 0.00 42.86 2.29
3746 3839 2.847901 CGTCCATCGATACGGTATGTC 58.152 52.381 11.96 0.00 42.86 3.06
3747 3840 2.413765 CGTCCATCGATACGGTATGTCC 60.414 54.545 11.96 0.00 42.86 4.02
3748 3841 2.555325 GTCCATCGATACGGTATGTCCA 59.445 50.000 5.18 0.00 35.57 4.02
3749 3842 3.192844 GTCCATCGATACGGTATGTCCAT 59.807 47.826 5.18 0.00 35.57 3.41
3750 3843 4.397103 GTCCATCGATACGGTATGTCCATA 59.603 45.833 5.18 0.00 35.57 2.74
3751 3844 5.067413 GTCCATCGATACGGTATGTCCATAT 59.933 44.000 5.18 0.00 35.57 1.78
3752 3845 5.067283 TCCATCGATACGGTATGTCCATATG 59.933 44.000 5.18 0.00 35.57 1.78
3753 3846 5.067283 CCATCGATACGGTATGTCCATATGA 59.933 44.000 5.18 0.00 35.57 2.15
3754 3847 6.405397 CCATCGATACGGTATGTCCATATGAA 60.405 42.308 5.18 0.00 35.57 2.57
3755 3848 6.190954 TCGATACGGTATGTCCATATGAAG 57.809 41.667 5.18 0.00 35.57 3.02
3756 3849 5.708697 TCGATACGGTATGTCCATATGAAGT 59.291 40.000 5.18 0.00 35.57 3.01
3757 3850 5.800438 CGATACGGTATGTCCATATGAAGTG 59.200 44.000 5.18 0.00 35.57 3.16
3758 3851 6.569801 CGATACGGTATGTCCATATGAAGTGT 60.570 42.308 5.18 0.00 35.57 3.55
3759 3852 4.693283 ACGGTATGTCCATATGAAGTGTG 58.307 43.478 3.65 0.00 35.57 3.82
3760 3853 4.161565 ACGGTATGTCCATATGAAGTGTGT 59.838 41.667 3.65 0.00 35.57 3.72
3761 3854 5.116180 CGGTATGTCCATATGAAGTGTGTT 58.884 41.667 3.65 0.00 35.57 3.32
3762 3855 5.584649 CGGTATGTCCATATGAAGTGTGTTT 59.415 40.000 3.65 0.00 35.57 2.83
3763 3856 6.759356 CGGTATGTCCATATGAAGTGTGTTTA 59.241 38.462 3.65 0.00 35.57 2.01
3764 3857 7.441157 CGGTATGTCCATATGAAGTGTGTTTAT 59.559 37.037 3.65 0.00 35.57 1.40
3765 3858 9.120538 GGTATGTCCATATGAAGTGTGTTTATT 57.879 33.333 3.65 0.00 35.97 1.40
3807 3900 7.533289 TTGGTTTAAGATAAAAGAACCCAGG 57.467 36.000 0.00 0.00 39.14 4.45
3808 3901 6.854578 TGGTTTAAGATAAAAGAACCCAGGA 58.145 36.000 0.00 0.00 39.14 3.86
3809 3902 7.475299 TGGTTTAAGATAAAAGAACCCAGGAT 58.525 34.615 0.00 0.00 39.14 3.24
3810 3903 7.396055 TGGTTTAAGATAAAAGAACCCAGGATG 59.604 37.037 0.00 0.00 39.14 3.51
3811 3904 7.396339 GGTTTAAGATAAAAGAACCCAGGATGT 59.604 37.037 0.00 0.00 34.97 3.06
3812 3905 8.803235 GTTTAAGATAAAAGAACCCAGGATGTT 58.197 33.333 0.00 0.00 0.00 2.71
3813 3906 6.840780 AAGATAAAAGAACCCAGGATGTTG 57.159 37.500 0.00 0.00 0.00 3.33
3814 3907 5.892348 AGATAAAAGAACCCAGGATGTTGT 58.108 37.500 0.00 0.00 0.00 3.32
3815 3908 5.946377 AGATAAAAGAACCCAGGATGTTGTC 59.054 40.000 0.00 0.00 0.00 3.18
3816 3909 3.593442 AAAGAACCCAGGATGTTGTCA 57.407 42.857 0.00 0.00 0.00 3.58
3817 3910 3.593442 AAGAACCCAGGATGTTGTCAA 57.407 42.857 0.00 0.00 0.00 3.18
3818 3911 2.863809 AGAACCCAGGATGTTGTCAAC 58.136 47.619 8.86 8.86 0.00 3.18
3819 3912 2.174639 AGAACCCAGGATGTTGTCAACA 59.825 45.455 20.28 20.28 46.94 3.33
3820 3913 2.746279 ACCCAGGATGTTGTCAACAA 57.254 45.000 21.71 6.42 45.86 2.83
3821 3914 3.243359 ACCCAGGATGTTGTCAACAAT 57.757 42.857 21.71 10.74 45.86 2.71
3822 3915 4.380843 ACCCAGGATGTTGTCAACAATA 57.619 40.909 21.71 0.00 45.86 1.90
3823 3916 4.934356 ACCCAGGATGTTGTCAACAATAT 58.066 39.130 21.71 6.25 45.86 1.28
3824 3917 4.706476 ACCCAGGATGTTGTCAACAATATG 59.294 41.667 21.71 17.88 45.86 1.78
3825 3918 4.706476 CCCAGGATGTTGTCAACAATATGT 59.294 41.667 21.71 5.49 45.86 2.29
3826 3919 5.885352 CCCAGGATGTTGTCAACAATATGTA 59.115 40.000 21.71 0.00 45.86 2.29
3827 3920 6.547141 CCCAGGATGTTGTCAACAATATGTAT 59.453 38.462 21.71 4.00 45.86 2.29
3828 3921 7.420002 CCAGGATGTTGTCAACAATATGTATG 58.580 38.462 21.71 12.84 45.86 2.39
3829 3922 7.420002 CAGGATGTTGTCAACAATATGTATGG 58.580 38.462 21.71 2.59 45.86 2.74
3830 3923 7.282901 CAGGATGTTGTCAACAATATGTATGGA 59.717 37.037 21.71 0.00 45.86 3.41
3831 3924 7.283127 AGGATGTTGTCAACAATATGTATGGAC 59.717 37.037 21.71 2.85 45.86 4.02
3832 3925 6.751514 TGTTGTCAACAATATGTATGGACC 57.248 37.500 16.05 0.00 38.72 4.46
3833 3926 6.480763 TGTTGTCAACAATATGTATGGACCT 58.519 36.000 16.05 0.00 38.72 3.85
3834 3927 7.625469 TGTTGTCAACAATATGTATGGACCTA 58.375 34.615 16.05 0.00 38.72 3.08
3835 3928 8.271458 TGTTGTCAACAATATGTATGGACCTAT 58.729 33.333 16.05 0.00 38.72 2.57
3836 3929 8.559536 GTTGTCAACAATATGTATGGACCTATG 58.440 37.037 10.93 0.00 38.24 2.23
3837 3930 6.710295 TGTCAACAATATGTATGGACCTATGC 59.290 38.462 0.00 0.00 30.17 3.14
3838 3931 6.149474 GTCAACAATATGTATGGACCTATGCC 59.851 42.308 0.00 0.00 0.00 4.40
3839 3932 6.044287 TCAACAATATGTATGGACCTATGCCT 59.956 38.462 0.00 0.00 0.00 4.75
3840 3933 7.236640 TCAACAATATGTATGGACCTATGCCTA 59.763 37.037 0.00 0.00 0.00 3.93
3841 3934 7.568128 ACAATATGTATGGACCTATGCCTAA 57.432 36.000 0.00 0.00 0.00 2.69
3842 3935 7.984475 ACAATATGTATGGACCTATGCCTAAA 58.016 34.615 0.00 0.00 0.00 1.85
3843 3936 8.614814 ACAATATGTATGGACCTATGCCTAAAT 58.385 33.333 0.00 0.00 0.00 1.40
3844 3937 9.113838 CAATATGTATGGACCTATGCCTAAATC 57.886 37.037 0.00 0.00 0.00 2.17
3845 3938 6.702449 ATGTATGGACCTATGCCTAAATCA 57.298 37.500 0.00 0.00 0.00 2.57
3846 3939 5.865085 TGTATGGACCTATGCCTAAATCAC 58.135 41.667 0.00 0.00 0.00 3.06
3847 3940 5.606749 TGTATGGACCTATGCCTAAATCACT 59.393 40.000 0.00 0.00 0.00 3.41
3848 3941 6.785466 TGTATGGACCTATGCCTAAATCACTA 59.215 38.462 0.00 0.00 0.00 2.74
3849 3942 6.763715 ATGGACCTATGCCTAAATCACTAA 57.236 37.500 0.00 0.00 0.00 2.24
3850 3943 6.763715 TGGACCTATGCCTAAATCACTAAT 57.236 37.500 0.00 0.00 0.00 1.73
3851 3944 7.149202 TGGACCTATGCCTAAATCACTAATT 57.851 36.000 0.00 0.00 0.00 1.40
3852 3945 7.582719 TGGACCTATGCCTAAATCACTAATTT 58.417 34.615 0.00 0.00 40.67 1.82
3853 3946 8.719596 TGGACCTATGCCTAAATCACTAATTTA 58.280 33.333 0.00 0.00 38.53 1.40
3854 3947 9.740710 GGACCTATGCCTAAATCACTAATTTAT 57.259 33.333 0.00 0.00 38.75 1.40
3859 3952 8.995027 ATGCCTAAATCACTAATTTATGACCA 57.005 30.769 0.00 0.00 38.75 4.02
3860 3953 8.995027 TGCCTAAATCACTAATTTATGACCAT 57.005 30.769 0.00 0.00 38.75 3.55
3867 3960 9.905713 AATCACTAATTTATGACCATACACACT 57.094 29.630 0.00 0.00 0.00 3.55
3868 3961 9.905713 ATCACTAATTTATGACCATACACACTT 57.094 29.630 0.00 0.00 0.00 3.16
3869 3962 9.378551 TCACTAATTTATGACCATACACACTTC 57.621 33.333 0.00 0.00 0.00 3.01
3870 3963 9.161629 CACTAATTTATGACCATACACACTTCA 57.838 33.333 0.00 0.00 0.00 3.02
3871 3964 9.383519 ACTAATTTATGACCATACACACTTCAG 57.616 33.333 0.00 0.00 0.00 3.02
3872 3965 6.683974 ATTTATGACCATACACACTTCAGC 57.316 37.500 0.00 0.00 0.00 4.26
3873 3966 3.988976 ATGACCATACACACTTCAGCT 57.011 42.857 0.00 0.00 0.00 4.24
3874 3967 6.538945 TTATGACCATACACACTTCAGCTA 57.461 37.500 0.00 0.00 0.00 3.32
3875 3968 5.620738 ATGACCATACACACTTCAGCTAT 57.379 39.130 0.00 0.00 0.00 2.97
3876 3969 6.731292 ATGACCATACACACTTCAGCTATA 57.269 37.500 0.00 0.00 0.00 1.31
3877 3970 5.902681 TGACCATACACACTTCAGCTATAC 58.097 41.667 0.00 0.00 0.00 1.47
3878 3971 5.420739 TGACCATACACACTTCAGCTATACA 59.579 40.000 0.00 0.00 0.00 2.29
3879 3972 6.098266 TGACCATACACACTTCAGCTATACAT 59.902 38.462 0.00 0.00 0.00 2.29
3880 3973 6.516718 ACCATACACACTTCAGCTATACATC 58.483 40.000 0.00 0.00 0.00 3.06
3881 3974 6.098266 ACCATACACACTTCAGCTATACATCA 59.902 38.462 0.00 0.00 0.00 3.07
3882 3975 6.986231 CCATACACACTTCAGCTATACATCAA 59.014 38.462 0.00 0.00 0.00 2.57
3883 3976 7.170489 CCATACACACTTCAGCTATACATCAAG 59.830 40.741 0.00 0.00 0.00 3.02
3884 3977 6.286240 ACACACTTCAGCTATACATCAAGA 57.714 37.500 0.00 0.00 0.00 3.02
3885 3978 6.701340 ACACACTTCAGCTATACATCAAGAA 58.299 36.000 0.00 0.00 0.00 2.52
3886 3979 7.161404 ACACACTTCAGCTATACATCAAGAAA 58.839 34.615 0.00 0.00 0.00 2.52
3887 3980 7.661437 ACACACTTCAGCTATACATCAAGAAAA 59.339 33.333 0.00 0.00 0.00 2.29
3888 3981 8.671921 CACACTTCAGCTATACATCAAGAAAAT 58.328 33.333 0.00 0.00 0.00 1.82
3889 3982 8.671921 ACACTTCAGCTATACATCAAGAAAATG 58.328 33.333 0.00 0.00 0.00 2.32
3890 3983 8.671921 CACTTCAGCTATACATCAAGAAAATGT 58.328 33.333 0.00 0.00 40.37 2.71
3891 3984 9.236006 ACTTCAGCTATACATCAAGAAAATGTT 57.764 29.630 0.00 0.00 38.31 2.71
3893 3986 9.844790 TTCAGCTATACATCAAGAAAATGTTTG 57.155 29.630 0.00 0.00 38.31 2.93
3894 3987 7.970061 TCAGCTATACATCAAGAAAATGTTTGC 59.030 33.333 0.00 0.00 38.31 3.68
3895 3988 6.968904 AGCTATACATCAAGAAAATGTTTGCG 59.031 34.615 0.00 0.00 38.31 4.85
3896 3989 6.747280 GCTATACATCAAGAAAATGTTTGCGT 59.253 34.615 0.00 0.00 38.31 5.24
3897 3990 7.908082 GCTATACATCAAGAAAATGTTTGCGTA 59.092 33.333 0.00 0.00 38.31 4.42
3898 3991 9.935682 CTATACATCAAGAAAATGTTTGCGTAT 57.064 29.630 0.00 0.00 38.31 3.06
3902 3995 9.469807 ACATCAAGAAAATGTTTGCGTATAAAA 57.530 25.926 0.00 0.00 33.62 1.52
3903 3996 9.726034 CATCAAGAAAATGTTTGCGTATAAAAC 57.274 29.630 0.00 0.00 37.90 2.43
3904 3997 9.691362 ATCAAGAAAATGTTTGCGTATAAAACT 57.309 25.926 0.00 0.00 38.17 2.66
3905 3998 8.963130 TCAAGAAAATGTTTGCGTATAAAACTG 58.037 29.630 0.00 0.00 38.17 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.027745 AGCTCCACATGTACCTTCTGTG 60.028 50.000 0.00 7.58 39.93 3.66
1 2 2.260822 AGCTCCACATGTACCTTCTGT 58.739 47.619 0.00 0.00 0.00 3.41
2 3 3.701542 TCTAGCTCCACATGTACCTTCTG 59.298 47.826 0.00 0.00 0.00 3.02
3 4 3.982516 TCTAGCTCCACATGTACCTTCT 58.017 45.455 0.00 0.00 0.00 2.85
4 5 4.946478 ATCTAGCTCCACATGTACCTTC 57.054 45.455 0.00 0.00 0.00 3.46
5 6 4.965532 AGAATCTAGCTCCACATGTACCTT 59.034 41.667 0.00 0.00 0.00 3.50
6 7 4.551671 AGAATCTAGCTCCACATGTACCT 58.448 43.478 0.00 0.00 0.00 3.08
7 8 4.342378 TGAGAATCTAGCTCCACATGTACC 59.658 45.833 0.00 0.00 34.92 3.34
8 9 5.521906 TGAGAATCTAGCTCCACATGTAC 57.478 43.478 0.00 0.00 34.92 2.90
9 10 5.069648 CCTTGAGAATCTAGCTCCACATGTA 59.930 44.000 0.00 0.00 36.62 2.29
10 11 4.141756 CCTTGAGAATCTAGCTCCACATGT 60.142 45.833 0.00 0.00 36.62 3.21
11 12 4.141756 ACCTTGAGAATCTAGCTCCACATG 60.142 45.833 0.00 0.00 36.62 3.21
12 13 4.036518 ACCTTGAGAATCTAGCTCCACAT 58.963 43.478 0.00 0.00 36.62 3.21
13 14 3.196469 CACCTTGAGAATCTAGCTCCACA 59.804 47.826 0.00 0.00 36.62 4.17
14 15 3.196685 ACACCTTGAGAATCTAGCTCCAC 59.803 47.826 0.00 0.00 36.62 4.02
15 16 3.196469 CACACCTTGAGAATCTAGCTCCA 59.804 47.826 0.00 0.00 36.62 3.86
16 17 3.431486 CCACACCTTGAGAATCTAGCTCC 60.431 52.174 0.00 0.00 36.62 4.70
17 18 3.196685 ACCACACCTTGAGAATCTAGCTC 59.803 47.826 0.00 0.00 36.62 4.09
18 19 3.055530 CACCACACCTTGAGAATCTAGCT 60.056 47.826 0.00 0.00 36.62 3.32
19 20 3.265791 CACCACACCTTGAGAATCTAGC 58.734 50.000 0.00 0.00 36.62 3.42
20 21 3.265791 GCACCACACCTTGAGAATCTAG 58.734 50.000 0.00 0.00 37.72 2.43
21 22 2.637382 TGCACCACACCTTGAGAATCTA 59.363 45.455 0.00 0.00 34.92 1.98
22 23 1.421268 TGCACCACACCTTGAGAATCT 59.579 47.619 0.00 0.00 34.92 2.40
23 24 1.537202 GTGCACCACACCTTGAGAATC 59.463 52.381 5.22 0.00 44.02 2.52
24 25 1.609208 GTGCACCACACCTTGAGAAT 58.391 50.000 5.22 0.00 44.02 2.40
25 26 3.094386 GTGCACCACACCTTGAGAA 57.906 52.632 5.22 0.00 44.02 2.87
26 27 4.876701 GTGCACCACACCTTGAGA 57.123 55.556 5.22 0.00 44.02 3.27
46 47 0.029300 TCTTTGTTCGTTGCTGCAGC 59.971 50.000 31.89 31.89 42.50 5.25
47 48 2.111756 GTTCTTTGTTCGTTGCTGCAG 58.888 47.619 10.11 10.11 0.00 4.41
48 49 1.202245 GGTTCTTTGTTCGTTGCTGCA 60.202 47.619 0.00 0.00 0.00 4.41
49 50 1.065551 AGGTTCTTTGTTCGTTGCTGC 59.934 47.619 0.00 0.00 0.00 5.25
50 51 2.097466 ACAGGTTCTTTGTTCGTTGCTG 59.903 45.455 0.00 0.00 0.00 4.41
51 52 2.354821 GACAGGTTCTTTGTTCGTTGCT 59.645 45.455 0.00 0.00 0.00 3.91
52 53 2.096819 TGACAGGTTCTTTGTTCGTTGC 59.903 45.455 0.00 0.00 0.00 4.17
53 54 3.788797 GCTGACAGGTTCTTTGTTCGTTG 60.789 47.826 4.26 0.00 0.00 4.10
54 55 2.354821 GCTGACAGGTTCTTTGTTCGTT 59.645 45.455 4.26 0.00 0.00 3.85
55 56 1.940613 GCTGACAGGTTCTTTGTTCGT 59.059 47.619 4.26 0.00 0.00 3.85
56 57 1.939934 TGCTGACAGGTTCTTTGTTCG 59.060 47.619 4.26 0.00 0.00 3.95
57 58 2.287248 GCTGCTGACAGGTTCTTTGTTC 60.287 50.000 4.26 0.00 44.63 3.18
58 59 1.678101 GCTGCTGACAGGTTCTTTGTT 59.322 47.619 4.26 0.00 44.63 2.83
59 60 1.312815 GCTGCTGACAGGTTCTTTGT 58.687 50.000 4.26 0.00 44.63 2.83
60 61 1.266175 CTGCTGCTGACAGGTTCTTTG 59.734 52.381 4.26 0.00 44.63 2.77
61 62 1.602311 CTGCTGCTGACAGGTTCTTT 58.398 50.000 4.26 0.00 44.63 2.52
62 63 3.319135 CTGCTGCTGACAGGTTCTT 57.681 52.632 4.26 0.00 44.63 2.52
69 70 4.687215 GCGGACCTGCTGCTGACA 62.687 66.667 8.20 0.00 45.70 3.58
77 78 4.329545 TTCCACCAGCGGACCTGC 62.330 66.667 1.50 0.68 40.36 4.85
78 79 2.046892 CTTCCACCAGCGGACCTG 60.047 66.667 1.50 0.00 41.41 4.00
79 80 2.203788 TCTTCCACCAGCGGACCT 60.204 61.111 1.50 0.00 33.75 3.85
80 81 1.617947 ATCTCTTCCACCAGCGGACC 61.618 60.000 1.50 0.00 33.75 4.46
81 82 0.250513 AATCTCTTCCACCAGCGGAC 59.749 55.000 1.50 0.00 33.75 4.79
82 83 1.860641 TAATCTCTTCCACCAGCGGA 58.139 50.000 1.50 0.00 0.00 5.54
83 84 2.168521 TCTTAATCTCTTCCACCAGCGG 59.831 50.000 0.00 0.00 0.00 5.52
84 85 3.452474 CTCTTAATCTCTTCCACCAGCG 58.548 50.000 0.00 0.00 0.00 5.18
85 86 3.118445 AGCTCTTAATCTCTTCCACCAGC 60.118 47.826 0.00 0.00 0.00 4.85
86 87 4.751767 AGCTCTTAATCTCTTCCACCAG 57.248 45.455 0.00 0.00 0.00 4.00
87 88 4.836825 CAAGCTCTTAATCTCTTCCACCA 58.163 43.478 0.00 0.00 0.00 4.17
88 89 3.625313 GCAAGCTCTTAATCTCTTCCACC 59.375 47.826 0.00 0.00 0.00 4.61
89 90 4.512484 AGCAAGCTCTTAATCTCTTCCAC 58.488 43.478 0.00 0.00 0.00 4.02
90 91 4.833478 AGCAAGCTCTTAATCTCTTCCA 57.167 40.909 0.00 0.00 0.00 3.53
91 92 7.800155 ATTAAGCAAGCTCTTAATCTCTTCC 57.200 36.000 12.43 0.00 42.45 3.46
92 93 8.061268 CGAATTAAGCAAGCTCTTAATCTCTTC 58.939 37.037 16.59 11.88 44.20 2.87
93 94 7.550906 ACGAATTAAGCAAGCTCTTAATCTCTT 59.449 33.333 16.59 6.20 44.20 2.85
94 95 7.044798 ACGAATTAAGCAAGCTCTTAATCTCT 58.955 34.615 16.59 5.88 44.20 3.10
95 96 7.240414 ACGAATTAAGCAAGCTCTTAATCTC 57.760 36.000 16.59 14.62 44.20 2.75
96 97 7.550906 AGAACGAATTAAGCAAGCTCTTAATCT 59.449 33.333 16.59 9.91 44.20 2.40
97 98 7.689299 AGAACGAATTAAGCAAGCTCTTAATC 58.311 34.615 16.59 11.19 44.20 1.75
98 99 7.550906 AGAGAACGAATTAAGCAAGCTCTTAAT 59.449 33.333 12.43 12.43 45.87 1.40
99 100 6.874134 AGAGAACGAATTAAGCAAGCTCTTAA 59.126 34.615 9.37 9.37 41.22 1.85
100 101 6.311445 CAGAGAACGAATTAAGCAAGCTCTTA 59.689 38.462 0.00 0.00 0.00 2.10
101 102 5.121454 CAGAGAACGAATTAAGCAAGCTCTT 59.879 40.000 0.00 0.00 0.00 2.85
102 103 4.629200 CAGAGAACGAATTAAGCAAGCTCT 59.371 41.667 0.00 0.00 0.00 4.09
103 104 4.627467 TCAGAGAACGAATTAAGCAAGCTC 59.373 41.667 0.00 0.00 0.00 4.09
104 105 4.569943 TCAGAGAACGAATTAAGCAAGCT 58.430 39.130 0.00 0.00 0.00 3.74
105 106 4.390297 ACTCAGAGAACGAATTAAGCAAGC 59.610 41.667 3.79 0.00 0.00 4.01
106 107 6.473397 AACTCAGAGAACGAATTAAGCAAG 57.527 37.500 3.79 0.00 0.00 4.01
107 108 6.861065 AAACTCAGAGAACGAATTAAGCAA 57.139 33.333 3.79 0.00 0.00 3.91
108 109 6.590292 CCTAAACTCAGAGAACGAATTAAGCA 59.410 38.462 3.79 0.00 0.00 3.91
109 110 6.036191 CCCTAAACTCAGAGAACGAATTAAGC 59.964 42.308 3.79 0.00 0.00 3.09
110 111 7.063544 CACCCTAAACTCAGAGAACGAATTAAG 59.936 40.741 3.79 0.00 0.00 1.85
111 112 6.872020 CACCCTAAACTCAGAGAACGAATTAA 59.128 38.462 3.79 0.00 0.00 1.40
112 113 6.014840 ACACCCTAAACTCAGAGAACGAATTA 60.015 38.462 3.79 0.00 0.00 1.40
113 114 5.221661 ACACCCTAAACTCAGAGAACGAATT 60.222 40.000 3.79 0.00 0.00 2.17
114 115 4.283722 ACACCCTAAACTCAGAGAACGAAT 59.716 41.667 3.79 0.00 0.00 3.34
115 116 3.640029 ACACCCTAAACTCAGAGAACGAA 59.360 43.478 3.79 0.00 0.00 3.85
116 117 3.228453 ACACCCTAAACTCAGAGAACGA 58.772 45.455 3.79 0.00 0.00 3.85
117 118 3.576648 GACACCCTAAACTCAGAGAACG 58.423 50.000 3.79 0.00 0.00 3.95
118 119 3.005578 ACGACACCCTAAACTCAGAGAAC 59.994 47.826 3.79 0.00 0.00 3.01
119 120 3.005472 CACGACACCCTAAACTCAGAGAA 59.995 47.826 3.79 0.00 0.00 2.87
120 121 2.557056 CACGACACCCTAAACTCAGAGA 59.443 50.000 3.79 0.00 0.00 3.10
121 122 2.352814 CCACGACACCCTAAACTCAGAG 60.353 54.545 0.00 0.00 0.00 3.35
122 123 1.616865 CCACGACACCCTAAACTCAGA 59.383 52.381 0.00 0.00 0.00 3.27
123 124 1.337823 CCCACGACACCCTAAACTCAG 60.338 57.143 0.00 0.00 0.00 3.35
124 125 0.682852 CCCACGACACCCTAAACTCA 59.317 55.000 0.00 0.00 0.00 3.41
125 126 0.683412 ACCCACGACACCCTAAACTC 59.317 55.000 0.00 0.00 0.00 3.01
126 127 1.134228 AACCCACGACACCCTAAACT 58.866 50.000 0.00 0.00 0.00 2.66
127 128 2.299867 TCTAACCCACGACACCCTAAAC 59.700 50.000 0.00 0.00 0.00 2.01
128 129 2.299867 GTCTAACCCACGACACCCTAAA 59.700 50.000 0.00 0.00 0.00 1.85
129 130 1.895131 GTCTAACCCACGACACCCTAA 59.105 52.381 0.00 0.00 0.00 2.69
130 131 1.549203 GTCTAACCCACGACACCCTA 58.451 55.000 0.00 0.00 0.00 3.53
131 132 1.530013 CGTCTAACCCACGACACCCT 61.530 60.000 0.00 0.00 39.75 4.34
132 133 1.080298 CGTCTAACCCACGACACCC 60.080 63.158 0.00 0.00 39.75 4.61
133 134 1.959085 TCGTCTAACCCACGACACC 59.041 57.895 0.00 0.00 41.27 4.16
138 139 0.172578 TGCAGATCGTCTAACCCACG 59.827 55.000 0.00 0.00 38.67 4.94
139 140 2.380084 TTGCAGATCGTCTAACCCAC 57.620 50.000 0.00 0.00 0.00 4.61
140 141 3.270027 CATTTGCAGATCGTCTAACCCA 58.730 45.455 0.00 0.00 0.00 4.51
141 142 3.270877 ACATTTGCAGATCGTCTAACCC 58.729 45.455 0.00 0.00 0.00 4.11
142 143 4.946784 AACATTTGCAGATCGTCTAACC 57.053 40.909 0.00 0.00 0.00 2.85
143 144 5.500290 CGGTAACATTTGCAGATCGTCTAAC 60.500 44.000 0.00 0.00 0.00 2.34
144 145 4.565166 CGGTAACATTTGCAGATCGTCTAA 59.435 41.667 0.00 0.00 0.00 2.10
145 146 4.109766 CGGTAACATTTGCAGATCGTCTA 58.890 43.478 0.00 0.00 0.00 2.59
146 147 2.930040 CGGTAACATTTGCAGATCGTCT 59.070 45.455 0.00 0.00 0.00 4.18
147 148 2.536928 GCGGTAACATTTGCAGATCGTC 60.537 50.000 0.00 0.00 0.00 4.20
148 149 1.396996 GCGGTAACATTTGCAGATCGT 59.603 47.619 0.00 0.00 0.00 3.73
149 150 1.665679 AGCGGTAACATTTGCAGATCG 59.334 47.619 0.00 0.00 0.00 3.69
150 151 2.677836 TGAGCGGTAACATTTGCAGATC 59.322 45.455 0.00 0.00 0.00 2.75
151 152 2.710377 TGAGCGGTAACATTTGCAGAT 58.290 42.857 0.00 0.00 0.00 2.90
152 153 2.177394 TGAGCGGTAACATTTGCAGA 57.823 45.000 0.00 0.00 0.00 4.26
153 154 3.373748 TGTATGAGCGGTAACATTTGCAG 59.626 43.478 0.00 0.00 0.00 4.41
154 155 3.339141 TGTATGAGCGGTAACATTTGCA 58.661 40.909 0.00 0.00 0.00 4.08
155 156 4.552166 ATGTATGAGCGGTAACATTTGC 57.448 40.909 4.43 0.00 0.00 3.68
158 159 4.640201 AGCAAATGTATGAGCGGTAACATT 59.360 37.500 13.59 13.59 42.71 2.71
159 160 4.199310 AGCAAATGTATGAGCGGTAACAT 58.801 39.130 4.43 4.43 34.11 2.71
160 161 3.605634 AGCAAATGTATGAGCGGTAACA 58.394 40.909 0.00 0.00 0.00 2.41
161 162 5.047847 TCTAGCAAATGTATGAGCGGTAAC 58.952 41.667 0.00 0.00 0.00 2.50
162 163 5.163447 ACTCTAGCAAATGTATGAGCGGTAA 60.163 40.000 0.00 0.00 0.00 2.85
163 164 4.341235 ACTCTAGCAAATGTATGAGCGGTA 59.659 41.667 0.00 0.00 0.00 4.02
164 165 3.133003 ACTCTAGCAAATGTATGAGCGGT 59.867 43.478 0.00 0.00 0.00 5.68
165 166 3.722147 ACTCTAGCAAATGTATGAGCGG 58.278 45.455 0.00 0.00 0.00 5.52
166 167 4.920340 CCTACTCTAGCAAATGTATGAGCG 59.080 45.833 0.00 0.00 0.00 5.03
167 168 5.233988 CCCTACTCTAGCAAATGTATGAGC 58.766 45.833 0.00 0.00 0.00 4.26
168 169 5.305644 ACCCCTACTCTAGCAAATGTATGAG 59.694 44.000 0.00 0.00 0.00 2.90
169 170 5.070446 CACCCCTACTCTAGCAAATGTATGA 59.930 44.000 0.00 0.00 0.00 2.15
170 171 5.300752 CACCCCTACTCTAGCAAATGTATG 58.699 45.833 0.00 0.00 0.00 2.39
171 172 4.348168 CCACCCCTACTCTAGCAAATGTAT 59.652 45.833 0.00 0.00 0.00 2.29
172 173 3.709653 CCACCCCTACTCTAGCAAATGTA 59.290 47.826 0.00 0.00 0.00 2.29
173 174 2.505819 CCACCCCTACTCTAGCAAATGT 59.494 50.000 0.00 0.00 0.00 2.71
174 175 2.158755 CCCACCCCTACTCTAGCAAATG 60.159 54.545 0.00 0.00 0.00 2.32
175 176 2.127708 CCCACCCCTACTCTAGCAAAT 58.872 52.381 0.00 0.00 0.00 2.32
176 177 1.203389 ACCCACCCCTACTCTAGCAAA 60.203 52.381 0.00 0.00 0.00 3.68
177 178 0.416231 ACCCACCCCTACTCTAGCAA 59.584 55.000 0.00 0.00 0.00 3.91
178 179 0.325296 CACCCACCCCTACTCTAGCA 60.325 60.000 0.00 0.00 0.00 3.49
179 180 0.032416 TCACCCACCCCTACTCTAGC 60.032 60.000 0.00 0.00 0.00 3.42
180 181 2.777459 ATCACCCACCCCTACTCTAG 57.223 55.000 0.00 0.00 0.00 2.43
181 182 4.630382 TTTATCACCCACCCCTACTCTA 57.370 45.455 0.00 0.00 0.00 2.43
182 183 3.502051 TTTATCACCCACCCCTACTCT 57.498 47.619 0.00 0.00 0.00 3.24
183 184 4.790718 AATTTATCACCCACCCCTACTC 57.209 45.455 0.00 0.00 0.00 2.59
184 185 5.674958 ACATAATTTATCACCCACCCCTACT 59.325 40.000 0.00 0.00 0.00 2.57
185 186 5.948842 ACATAATTTATCACCCACCCCTAC 58.051 41.667 0.00 0.00 0.00 3.18
186 187 7.202242 CCTTACATAATTTATCACCCACCCCTA 60.202 40.741 0.00 0.00 0.00 3.53
187 188 6.411554 CCTTACATAATTTATCACCCACCCCT 60.412 42.308 0.00 0.00 0.00 4.79
188 189 5.773176 CCTTACATAATTTATCACCCACCCC 59.227 44.000 0.00 0.00 0.00 4.95
189 190 6.264518 CACCTTACATAATTTATCACCCACCC 59.735 42.308 0.00 0.00 0.00 4.61
190 191 6.831868 ACACCTTACATAATTTATCACCCACC 59.168 38.462 0.00 0.00 0.00 4.61
191 192 7.201785 CCACACCTTACATAATTTATCACCCAC 60.202 40.741 0.00 0.00 0.00 4.61
192 193 6.831353 CCACACCTTACATAATTTATCACCCA 59.169 38.462 0.00 0.00 0.00 4.51
193 194 6.831868 ACCACACCTTACATAATTTATCACCC 59.168 38.462 0.00 0.00 0.00 4.61
194 195 7.875327 ACCACACCTTACATAATTTATCACC 57.125 36.000 0.00 0.00 0.00 4.02
195 196 8.188139 CCAACCACACCTTACATAATTTATCAC 58.812 37.037 0.00 0.00 0.00 3.06
196 197 7.340743 CCCAACCACACCTTACATAATTTATCA 59.659 37.037 0.00 0.00 0.00 2.15
197 198 7.340999 ACCCAACCACACCTTACATAATTTATC 59.659 37.037 0.00 0.00 0.00 1.75
198 199 7.123547 CACCCAACCACACCTTACATAATTTAT 59.876 37.037 0.00 0.00 0.00 1.40
199 200 6.434652 CACCCAACCACACCTTACATAATTTA 59.565 38.462 0.00 0.00 0.00 1.40
200 201 5.245075 CACCCAACCACACCTTACATAATTT 59.755 40.000 0.00 0.00 0.00 1.82
201 202 4.770010 CACCCAACCACACCTTACATAATT 59.230 41.667 0.00 0.00 0.00 1.40
202 203 4.340617 CACCCAACCACACCTTACATAAT 58.659 43.478 0.00 0.00 0.00 1.28
203 204 3.757270 CACCCAACCACACCTTACATAA 58.243 45.455 0.00 0.00 0.00 1.90
204 205 2.553466 GCACCCAACCACACCTTACATA 60.553 50.000 0.00 0.00 0.00 2.29
205 206 1.821666 GCACCCAACCACACCTTACAT 60.822 52.381 0.00 0.00 0.00 2.29
206 207 0.466555 GCACCCAACCACACCTTACA 60.467 55.000 0.00 0.00 0.00 2.41
207 208 0.179001 AGCACCCAACCACACCTTAC 60.179 55.000 0.00 0.00 0.00 2.34
208 209 0.109723 GAGCACCCAACCACACCTTA 59.890 55.000 0.00 0.00 0.00 2.69
209 210 1.152756 GAGCACCCAACCACACCTT 60.153 57.895 0.00 0.00 0.00 3.50
210 211 2.515901 GAGCACCCAACCACACCT 59.484 61.111 0.00 0.00 0.00 4.00
211 212 2.978010 CGAGCACCCAACCACACC 60.978 66.667 0.00 0.00 0.00 4.16
212 213 3.660111 GCGAGCACCCAACCACAC 61.660 66.667 0.00 0.00 0.00 3.82
213 214 3.825160 GAGCGAGCACCCAACCACA 62.825 63.158 0.00 0.00 0.00 4.17
214 215 3.050275 GAGCGAGCACCCAACCAC 61.050 66.667 0.00 0.00 0.00 4.16
215 216 3.535629 CTGAGCGAGCACCCAACCA 62.536 63.158 0.00 0.00 0.00 3.67
216 217 2.743928 CTGAGCGAGCACCCAACC 60.744 66.667 0.00 0.00 0.00 3.77
217 218 2.029844 GACTGAGCGAGCACCCAAC 61.030 63.158 0.00 0.00 0.00 3.77
218 219 1.758440 AAGACTGAGCGAGCACCCAA 61.758 55.000 0.00 0.00 0.00 4.12
219 220 1.758440 AAAGACTGAGCGAGCACCCA 61.758 55.000 0.00 0.00 0.00 4.51
220 221 1.004440 AAAGACTGAGCGAGCACCC 60.004 57.895 0.00 0.00 0.00 4.61
221 222 0.601311 ACAAAGACTGAGCGAGCACC 60.601 55.000 0.00 0.00 0.00 5.01
222 223 1.193426 GAACAAAGACTGAGCGAGCAC 59.807 52.381 0.00 0.00 0.00 4.40
223 224 1.069204 AGAACAAAGACTGAGCGAGCA 59.931 47.619 0.00 0.00 0.00 4.26
224 225 1.789506 AGAACAAAGACTGAGCGAGC 58.210 50.000 0.00 0.00 0.00 5.03
225 226 3.384668 TCAAGAACAAAGACTGAGCGAG 58.615 45.455 0.00 0.00 0.00 5.03
226 227 3.452755 TCAAGAACAAAGACTGAGCGA 57.547 42.857 0.00 0.00 0.00 4.93
227 228 3.496130 ACATCAAGAACAAAGACTGAGCG 59.504 43.478 0.00 0.00 0.00 5.03
228 229 5.429957 AACATCAAGAACAAAGACTGAGC 57.570 39.130 0.00 0.00 0.00 4.26
229 230 7.253422 ACAAAACATCAAGAACAAAGACTGAG 58.747 34.615 0.00 0.00 0.00 3.35
230 231 7.156876 ACAAAACATCAAGAACAAAGACTGA 57.843 32.000 0.00 0.00 0.00 3.41
231 232 6.195244 CGACAAAACATCAAGAACAAAGACTG 59.805 38.462 0.00 0.00 0.00 3.51
232 233 6.258160 CGACAAAACATCAAGAACAAAGACT 58.742 36.000 0.00 0.00 0.00 3.24
233 234 5.455525 CCGACAAAACATCAAGAACAAAGAC 59.544 40.000 0.00 0.00 0.00 3.01
234 235 5.355630 TCCGACAAAACATCAAGAACAAAGA 59.644 36.000 0.00 0.00 0.00 2.52
235 236 5.577835 TCCGACAAAACATCAAGAACAAAG 58.422 37.500 0.00 0.00 0.00 2.77
236 237 5.568685 TCCGACAAAACATCAAGAACAAA 57.431 34.783 0.00 0.00 0.00 2.83
237 238 5.298026 TCATCCGACAAAACATCAAGAACAA 59.702 36.000 0.00 0.00 0.00 2.83
238 239 4.819088 TCATCCGACAAAACATCAAGAACA 59.181 37.500 0.00 0.00 0.00 3.18
239 240 5.179368 TCTCATCCGACAAAACATCAAGAAC 59.821 40.000 0.00 0.00 0.00 3.01
240 241 5.304778 TCTCATCCGACAAAACATCAAGAA 58.695 37.500 0.00 0.00 0.00 2.52
241 242 4.893608 TCTCATCCGACAAAACATCAAGA 58.106 39.130 0.00 0.00 0.00 3.02
242 243 5.808042 ATCTCATCCGACAAAACATCAAG 57.192 39.130 0.00 0.00 0.00 3.02
243 244 5.123820 GGAATCTCATCCGACAAAACATCAA 59.876 40.000 0.00 0.00 0.00 2.57
244 245 4.635765 GGAATCTCATCCGACAAAACATCA 59.364 41.667 0.00 0.00 0.00 3.07
245 246 5.162000 GGAATCTCATCCGACAAAACATC 57.838 43.478 0.00 0.00 0.00 3.06
256 257 2.860735 CGTGAAGTTCGGAATCTCATCC 59.139 50.000 7.66 0.00 36.05 3.51
257 258 3.770666 TCGTGAAGTTCGGAATCTCATC 58.229 45.455 7.66 3.09 0.00 2.92
258 259 3.868757 TCGTGAAGTTCGGAATCTCAT 57.131 42.857 7.66 0.00 0.00 2.90
259 260 3.868757 ATCGTGAAGTTCGGAATCTCA 57.131 42.857 0.00 0.00 0.00 3.27
260 261 6.642683 TTAAATCGTGAAGTTCGGAATCTC 57.357 37.500 0.00 0.00 0.00 2.75
261 262 7.611213 ATTTAAATCGTGAAGTTCGGAATCT 57.389 32.000 0.00 0.00 0.00 2.40
262 263 9.763465 TTTATTTAAATCGTGAAGTTCGGAATC 57.237 29.630 3.39 0.00 0.00 2.52
263 264 9.769093 CTTTATTTAAATCGTGAAGTTCGGAAT 57.231 29.630 3.39 0.00 0.00 3.01
264 265 7.747357 GCTTTATTTAAATCGTGAAGTTCGGAA 59.253 33.333 3.39 0.00 0.00 4.30
265 266 7.238571 GCTTTATTTAAATCGTGAAGTTCGGA 58.761 34.615 3.39 0.00 0.00 4.55
266 267 6.192137 CGCTTTATTTAAATCGTGAAGTTCGG 59.808 38.462 3.39 0.00 32.19 4.30
267 268 6.192137 CCGCTTTATTTAAATCGTGAAGTTCG 59.808 38.462 3.39 5.63 34.21 3.95
268 269 6.021704 GCCGCTTTATTTAAATCGTGAAGTTC 60.022 38.462 3.39 0.00 34.21 3.01
269 270 5.798434 GCCGCTTTATTTAAATCGTGAAGTT 59.202 36.000 3.39 0.00 34.21 2.66
270 271 5.106475 TGCCGCTTTATTTAAATCGTGAAGT 60.106 36.000 3.39 0.00 34.21 3.01
271 272 5.328691 TGCCGCTTTATTTAAATCGTGAAG 58.671 37.500 3.39 6.57 34.21 3.02
272 273 5.298197 TGCCGCTTTATTTAAATCGTGAA 57.702 34.783 3.39 0.00 34.21 3.18
273 274 4.948608 TGCCGCTTTATTTAAATCGTGA 57.051 36.364 3.39 0.00 34.21 4.35
274 275 5.092781 ACTTGCCGCTTTATTTAAATCGTG 58.907 37.500 3.39 1.86 34.21 4.35
275 276 5.305139 ACTTGCCGCTTTATTTAAATCGT 57.695 34.783 3.39 0.00 34.21 3.73
276 277 6.088883 ACAAACTTGCCGCTTTATTTAAATCG 59.911 34.615 3.39 2.08 35.36 3.34
277 278 7.346208 ACAAACTTGCCGCTTTATTTAAATC 57.654 32.000 3.39 0.00 0.00 2.17
278 279 6.367695 GGACAAACTTGCCGCTTTATTTAAAT 59.632 34.615 5.89 5.89 0.00 1.40
279 280 5.692654 GGACAAACTTGCCGCTTTATTTAAA 59.307 36.000 0.00 0.00 0.00 1.52
280 281 5.224135 GGACAAACTTGCCGCTTTATTTAA 58.776 37.500 0.00 0.00 0.00 1.52
281 282 4.321378 GGGACAAACTTGCCGCTTTATTTA 60.321 41.667 0.00 0.00 0.00 1.40
282 283 3.554129 GGGACAAACTTGCCGCTTTATTT 60.554 43.478 0.00 0.00 0.00 1.40
283 284 2.029380 GGGACAAACTTGCCGCTTTATT 60.029 45.455 0.00 0.00 0.00 1.40
284 285 1.544246 GGGACAAACTTGCCGCTTTAT 59.456 47.619 0.00 0.00 0.00 1.40
285 286 0.955905 GGGACAAACTTGCCGCTTTA 59.044 50.000 0.00 0.00 0.00 1.85
286 287 0.755327 AGGGACAAACTTGCCGCTTT 60.755 50.000 0.00 0.00 30.03 3.51
287 288 0.109723 TAGGGACAAACTTGCCGCTT 59.890 50.000 0.92 0.00 35.59 4.68
288 289 0.109723 TTAGGGACAAACTTGCCGCT 59.890 50.000 1.29 1.29 37.56 5.52
289 290 0.955905 TTTAGGGACAAACTTGCCGC 59.044 50.000 0.00 0.00 0.00 6.53
290 291 3.719173 TTTTTAGGGACAAACTTGCCG 57.281 42.857 0.00 0.00 0.00 5.69
308 309 3.487372 CCCGAACCCTCTTCTTCTTTTT 58.513 45.455 0.00 0.00 0.00 1.94
309 310 2.224793 CCCCGAACCCTCTTCTTCTTTT 60.225 50.000 0.00 0.00 0.00 2.27
310 311 1.351350 CCCCGAACCCTCTTCTTCTTT 59.649 52.381 0.00 0.00 0.00 2.52
311 312 0.984995 CCCCGAACCCTCTTCTTCTT 59.015 55.000 0.00 0.00 0.00 2.52
312 313 0.178900 ACCCCGAACCCTCTTCTTCT 60.179 55.000 0.00 0.00 0.00 2.85
313 314 0.036294 CACCCCGAACCCTCTTCTTC 60.036 60.000 0.00 0.00 0.00 2.87
314 315 0.473117 TCACCCCGAACCCTCTTCTT 60.473 55.000 0.00 0.00 0.00 2.52
315 316 0.252742 ATCACCCCGAACCCTCTTCT 60.253 55.000 0.00 0.00 0.00 2.85
316 317 0.178301 GATCACCCCGAACCCTCTTC 59.822 60.000 0.00 0.00 0.00 2.87
317 318 1.272554 GGATCACCCCGAACCCTCTT 61.273 60.000 0.00 0.00 30.25 2.85
318 319 1.689582 GGATCACCCCGAACCCTCT 60.690 63.158 0.00 0.00 30.25 3.69
319 320 0.398098 TAGGATCACCCCGAACCCTC 60.398 60.000 0.00 0.00 37.27 4.30
320 321 0.043637 TTAGGATCACCCCGAACCCT 59.956 55.000 0.00 0.00 37.27 4.34
321 322 0.913924 TTTAGGATCACCCCGAACCC 59.086 55.000 0.00 0.00 37.27 4.11
322 323 2.793288 TTTTAGGATCACCCCGAACC 57.207 50.000 0.00 0.00 36.82 3.62
342 343 3.820195 AGATTACCCCGAACCCTTTTT 57.180 42.857 0.00 0.00 0.00 1.94
343 344 3.820195 AAGATTACCCCGAACCCTTTT 57.180 42.857 0.00 0.00 0.00 2.27
344 345 3.427573 CAAAGATTACCCCGAACCCTTT 58.572 45.455 0.00 0.00 0.00 3.11
345 346 2.882643 GCAAAGATTACCCCGAACCCTT 60.883 50.000 0.00 0.00 0.00 3.95
413 414 2.262423 ACTCACAACCTTGCTTCCTC 57.738 50.000 0.00 0.00 0.00 3.71
414 415 2.301346 CAACTCACAACCTTGCTTCCT 58.699 47.619 0.00 0.00 0.00 3.36
415 416 2.024414 ACAACTCACAACCTTGCTTCC 58.976 47.619 0.00 0.00 0.00 3.46
416 417 4.598062 GTTACAACTCACAACCTTGCTTC 58.402 43.478 0.00 0.00 0.00 3.86
417 418 3.064820 CGTTACAACTCACAACCTTGCTT 59.935 43.478 0.00 0.00 0.00 3.91
514 519 1.867233 CATCCCAACTATACTGTGCGC 59.133 52.381 0.00 0.00 0.00 6.09
537 542 2.105821 CTGGCCTACCCGATATTTTGGA 59.894 50.000 3.32 0.00 35.87 3.53
543 548 2.585900 TCCTATCTGGCCTACCCGATAT 59.414 50.000 3.32 0.00 35.87 1.63
569 575 5.640357 GGTCGATCCTAGACACTATCTACTG 59.360 48.000 0.00 0.00 40.20 2.74
602 613 2.839486 TGATGATCCTAACCGATGCC 57.161 50.000 0.00 0.00 0.00 4.40
698 724 0.966875 GTTCCTCCATGCATGCCACA 60.967 55.000 21.69 1.86 0.00 4.17
954 980 7.054751 TCCTCCTGTGTATATACGGATAGATG 58.945 42.308 9.85 1.52 0.00 2.90
964 990 2.377531 TCCGGCTCCTCCTGTGTATATA 59.622 50.000 0.00 0.00 0.00 0.86
965 991 1.147191 TCCGGCTCCTCCTGTGTATAT 59.853 52.381 0.00 0.00 0.00 0.86
1297 1323 8.337739 ACGATCCTACCTCCATCTAATAGTAAT 58.662 37.037 0.00 0.00 0.00 1.89
1303 1329 6.130569 GGATACGATCCTACCTCCATCTAAT 58.869 44.000 0.00 0.00 46.19 1.73
1304 1330 5.507637 GGATACGATCCTACCTCCATCTAA 58.492 45.833 0.00 0.00 46.19 2.10
1349 1393 2.251963 TGCAAACATGCAGACGCG 59.748 55.556 3.53 3.53 42.97 6.01
1404 1452 4.760047 ATGCCGTCCTGCCACGAC 62.760 66.667 0.00 0.00 42.69 4.34
2507 2555 9.819267 GCTTAGTAGTTCCATCAAATTAGTACT 57.181 33.333 0.00 0.00 0.00 2.73
2508 2556 9.819267 AGCTTAGTAGTTCCATCAAATTAGTAC 57.181 33.333 0.00 0.00 0.00 2.73
2509 2557 9.817809 CAGCTTAGTAGTTCCATCAAATTAGTA 57.182 33.333 0.00 0.00 0.00 1.82
2518 2566 3.249559 GCATGCAGCTTAGTAGTTCCATC 59.750 47.826 14.21 0.00 41.15 3.51
2547 2595 0.962489 AGACCCGATCGATGATCCAC 59.038 55.000 18.66 0.00 35.83 4.02
2589 2641 2.265904 CCCATGCTGCATCCATCCG 61.266 63.158 13.10 0.00 0.00 4.18
3434 3506 3.245518 ACCCAAAGACAGTTTTGCAAC 57.754 42.857 0.00 0.00 36.86 4.17
3457 3529 2.851263 TCCATTGTGACAGGTACACC 57.149 50.000 0.00 0.00 37.45 4.16
3486 3568 3.975035 GCTAGTGTTTTCTCCGCTTTTTG 59.025 43.478 0.00 0.00 0.00 2.44
3552 3645 0.951525 TTGGTGTGTTCGCCCATACG 60.952 55.000 0.00 0.00 43.03 3.06
3559 3652 3.359654 CTTACAAGTTTGGTGTGTTCGC 58.640 45.455 0.00 0.00 0.00 4.70
3608 3701 4.523083 AGTCAGAAAGTTTGTGCCTTACA 58.477 39.130 7.86 0.00 37.56 2.41
3609 3702 4.023963 GGAGTCAGAAAGTTTGTGCCTTAC 60.024 45.833 7.86 1.62 0.00 2.34
3610 3703 4.134563 GGAGTCAGAAAGTTTGTGCCTTA 58.865 43.478 7.86 0.00 0.00 2.69
3611 3704 2.952310 GGAGTCAGAAAGTTTGTGCCTT 59.048 45.455 7.86 0.00 0.00 4.35
3612 3705 2.092429 TGGAGTCAGAAAGTTTGTGCCT 60.092 45.455 7.86 1.70 0.00 4.75
3613 3706 2.297701 TGGAGTCAGAAAGTTTGTGCC 58.702 47.619 7.86 4.69 0.00 5.01
3614 3707 3.304928 CCATGGAGTCAGAAAGTTTGTGC 60.305 47.826 5.56 3.91 0.00 4.57
3615 3708 4.023707 GTCCATGGAGTCAGAAAGTTTGTG 60.024 45.833 16.81 6.41 0.00 3.33
3616 3709 4.137543 GTCCATGGAGTCAGAAAGTTTGT 58.862 43.478 16.81 0.00 0.00 2.83
3617 3710 4.392940 AGTCCATGGAGTCAGAAAGTTTG 58.607 43.478 16.81 0.00 0.00 2.93
3649 3742 4.266502 GCTATACTGAAGTCTTGTCAAGCG 59.733 45.833 7.78 0.00 0.00 4.68
3651 3744 5.809562 CCTGCTATACTGAAGTCTTGTCAAG 59.190 44.000 6.21 6.21 0.00 3.02
3652 3745 5.480422 TCCTGCTATACTGAAGTCTTGTCAA 59.520 40.000 0.00 0.00 0.00 3.18
3665 3758 6.377912 ACTATGGTTCTTCTCCTGCTATACT 58.622 40.000 0.00 0.00 0.00 2.12
3667 3760 7.295340 TGTACTATGGTTCTTCTCCTGCTATA 58.705 38.462 0.00 0.00 0.00 1.31
3669 3762 5.516044 TGTACTATGGTTCTTCTCCTGCTA 58.484 41.667 0.00 0.00 0.00 3.49
3671 3764 4.737855 TGTACTATGGTTCTTCTCCTGC 57.262 45.455 0.00 0.00 0.00 4.85
3685 3778 5.106396 CGGGCTACGCTAGTAAATGTACTAT 60.106 44.000 3.15 0.00 41.09 2.12
3715 3808 3.155470 GATGGACGCGACAATGCCG 62.155 63.158 15.93 0.00 0.00 5.69
3716 3809 2.709475 GATGGACGCGACAATGCC 59.291 61.111 15.93 4.49 0.00 4.40
3717 3810 1.490693 ATCGATGGACGCGACAATGC 61.491 55.000 15.93 0.00 40.94 3.56
3718 3811 1.452025 GTATCGATGGACGCGACAATG 59.548 52.381 15.93 8.46 40.94 2.82
3719 3812 1.767289 GTATCGATGGACGCGACAAT 58.233 50.000 15.93 5.30 40.94 2.71
3720 3813 0.590481 CGTATCGATGGACGCGACAA 60.590 55.000 15.93 0.00 40.94 3.18
3721 3814 1.010462 CGTATCGATGGACGCGACA 60.010 57.895 15.93 12.47 40.94 4.35
3722 3815 1.724929 CCGTATCGATGGACGCGAC 60.725 63.158 15.93 6.56 40.94 5.19
3723 3816 0.879839 TACCGTATCGATGGACGCGA 60.880 55.000 15.93 2.75 42.48 5.87
3724 3817 0.167470 ATACCGTATCGATGGACGCG 59.833 55.000 13.92 3.53 42.26 6.01
3725 3818 1.068748 ACATACCGTATCGATGGACGC 60.069 52.381 13.92 0.00 42.26 5.19
3726 3819 2.413765 GGACATACCGTATCGATGGACG 60.414 54.545 8.54 10.99 44.09 4.79
3727 3820 2.555325 TGGACATACCGTATCGATGGAC 59.445 50.000 8.54 0.00 42.61 4.02
3728 3821 2.866351 TGGACATACCGTATCGATGGA 58.134 47.619 8.54 0.00 42.61 3.41
3729 3822 3.868757 ATGGACATACCGTATCGATGG 57.131 47.619 8.54 3.97 42.61 3.51
3730 3823 6.131544 TCATATGGACATACCGTATCGATG 57.868 41.667 8.54 0.00 45.87 3.84
3731 3824 6.377429 ACTTCATATGGACATACCGTATCGAT 59.623 38.462 2.16 2.16 45.87 3.59
3732 3825 5.708697 ACTTCATATGGACATACCGTATCGA 59.291 40.000 2.13 0.00 45.87 3.59
3733 3826 5.800438 CACTTCATATGGACATACCGTATCG 59.200 44.000 2.13 0.00 45.87 2.92
3734 3827 6.586463 CACACTTCATATGGACATACCGTATC 59.414 42.308 2.13 0.00 45.87 2.24
3736 3829 5.361571 ACACACTTCATATGGACATACCGTA 59.638 40.000 2.13 0.00 43.33 4.02
3737 3830 4.161565 ACACACTTCATATGGACATACCGT 59.838 41.667 2.13 0.00 42.61 4.83
3738 3831 4.693283 ACACACTTCATATGGACATACCG 58.307 43.478 2.13 0.00 42.61 4.02
3739 3832 8.677148 ATAAACACACTTCATATGGACATACC 57.323 34.615 2.13 0.00 39.54 2.73
3781 3874 9.250246 CCTGGGTTCTTTTATCTTAAACCAATA 57.750 33.333 5.09 0.00 38.20 1.90
3782 3875 7.953493 TCCTGGGTTCTTTTATCTTAAACCAAT 59.047 33.333 5.09 0.00 38.20 3.16
3783 3876 7.299134 TCCTGGGTTCTTTTATCTTAAACCAA 58.701 34.615 5.09 0.00 38.20 3.67
3784 3877 6.854578 TCCTGGGTTCTTTTATCTTAAACCA 58.145 36.000 5.09 0.00 40.92 3.67
3785 3878 7.396339 ACATCCTGGGTTCTTTTATCTTAAACC 59.604 37.037 0.00 0.00 38.90 3.27
3786 3879 8.349568 ACATCCTGGGTTCTTTTATCTTAAAC 57.650 34.615 0.00 0.00 0.00 2.01
3787 3880 8.802267 CAACATCCTGGGTTCTTTTATCTTAAA 58.198 33.333 0.00 0.00 0.00 1.52
3788 3881 7.947890 ACAACATCCTGGGTTCTTTTATCTTAA 59.052 33.333 0.00 0.00 0.00 1.85
3789 3882 7.466804 ACAACATCCTGGGTTCTTTTATCTTA 58.533 34.615 0.00 0.00 0.00 2.10
3790 3883 6.314917 ACAACATCCTGGGTTCTTTTATCTT 58.685 36.000 0.00 0.00 0.00 2.40
3791 3884 5.892348 ACAACATCCTGGGTTCTTTTATCT 58.108 37.500 0.00 0.00 0.00 1.98
3792 3885 5.710099 TGACAACATCCTGGGTTCTTTTATC 59.290 40.000 0.00 0.00 0.00 1.75
3793 3886 5.640147 TGACAACATCCTGGGTTCTTTTAT 58.360 37.500 0.00 0.00 0.00 1.40
3794 3887 5.055265 TGACAACATCCTGGGTTCTTTTA 57.945 39.130 0.00 0.00 0.00 1.52
3795 3888 3.909732 TGACAACATCCTGGGTTCTTTT 58.090 40.909 0.00 0.00 0.00 2.27
3796 3889 3.593442 TGACAACATCCTGGGTTCTTT 57.407 42.857 0.00 0.00 0.00 2.52
3797 3890 3.222603 GTTGACAACATCCTGGGTTCTT 58.777 45.455 13.52 0.00 0.00 2.52
3798 3891 2.174639 TGTTGACAACATCCTGGGTTCT 59.825 45.455 17.02 0.00 36.25 3.01
3799 3892 2.582052 TGTTGACAACATCCTGGGTTC 58.418 47.619 17.02 0.00 36.25 3.62
3800 3893 2.746279 TGTTGACAACATCCTGGGTT 57.254 45.000 17.02 0.00 36.25 4.11
3801 3894 2.746279 TTGTTGACAACATCCTGGGT 57.254 45.000 21.19 0.00 41.79 4.51
3802 3895 4.706476 ACATATTGTTGACAACATCCTGGG 59.294 41.667 21.19 11.47 41.79 4.45
3803 3896 5.902613 ACATATTGTTGACAACATCCTGG 57.097 39.130 21.19 12.40 41.79 4.45
3804 3897 7.282901 TCCATACATATTGTTGACAACATCCTG 59.717 37.037 21.19 18.44 41.79 3.86
3805 3898 7.283127 GTCCATACATATTGTTGACAACATCCT 59.717 37.037 21.19 11.72 41.79 3.24
3806 3899 7.417612 GTCCATACATATTGTTGACAACATCC 58.582 38.462 21.19 0.00 41.79 3.51
3807 3900 7.283127 AGGTCCATACATATTGTTGACAACATC 59.717 37.037 21.19 0.00 41.79 3.06
3808 3901 7.118723 AGGTCCATACATATTGTTGACAACAT 58.881 34.615 21.19 13.48 41.79 2.71
3809 3902 6.480763 AGGTCCATACATATTGTTGACAACA 58.519 36.000 17.02 17.02 38.86 3.33
3810 3903 8.559536 CATAGGTCCATACATATTGTTGACAAC 58.440 37.037 11.54 11.54 38.86 3.32
3811 3904 7.228507 GCATAGGTCCATACATATTGTTGACAA 59.771 37.037 0.00 0.00 40.51 3.18
3812 3905 6.710295 GCATAGGTCCATACATATTGTTGACA 59.290 38.462 0.00 0.00 30.37 3.58
3813 3906 6.149474 GGCATAGGTCCATACATATTGTTGAC 59.851 42.308 0.00 0.00 30.37 3.18
3814 3907 6.044287 AGGCATAGGTCCATACATATTGTTGA 59.956 38.462 0.00 0.00 30.37 3.18
3815 3908 6.240894 AGGCATAGGTCCATACATATTGTTG 58.759 40.000 0.00 0.00 30.37 3.33
3816 3909 6.454223 AGGCATAGGTCCATACATATTGTT 57.546 37.500 0.00 0.00 30.37 2.83
3817 3910 7.568128 TTAGGCATAGGTCCATACATATTGT 57.432 36.000 0.00 0.00 30.37 2.71
3818 3911 9.113838 GATTTAGGCATAGGTCCATACATATTG 57.886 37.037 0.00 0.00 30.37 1.90
3819 3912 8.835734 TGATTTAGGCATAGGTCCATACATATT 58.164 33.333 0.00 0.00 30.37 1.28
3820 3913 8.267894 GTGATTTAGGCATAGGTCCATACATAT 58.732 37.037 0.00 0.00 32.96 1.78
3821 3914 7.457852 AGTGATTTAGGCATAGGTCCATACATA 59.542 37.037 0.00 0.00 0.00 2.29
3822 3915 6.273260 AGTGATTTAGGCATAGGTCCATACAT 59.727 38.462 0.00 0.00 0.00 2.29
3823 3916 5.606749 AGTGATTTAGGCATAGGTCCATACA 59.393 40.000 0.00 0.00 0.00 2.29
3824 3917 6.115448 AGTGATTTAGGCATAGGTCCATAC 57.885 41.667 0.00 0.00 0.00 2.39
3825 3918 7.865530 TTAGTGATTTAGGCATAGGTCCATA 57.134 36.000 0.00 0.00 0.00 2.74
3826 3919 6.763715 TTAGTGATTTAGGCATAGGTCCAT 57.236 37.500 0.00 0.00 0.00 3.41
3827 3920 6.763715 ATTAGTGATTTAGGCATAGGTCCA 57.236 37.500 0.00 0.00 0.00 4.02
3828 3921 9.740710 ATAAATTAGTGATTTAGGCATAGGTCC 57.259 33.333 6.30 0.00 42.00 4.46
3834 3927 8.995027 TGGTCATAAATTAGTGATTTAGGCAT 57.005 30.769 7.07 0.00 42.00 4.40
3835 3928 8.995027 ATGGTCATAAATTAGTGATTTAGGCA 57.005 30.769 7.07 2.37 42.00 4.75
3841 3934 9.905713 AGTGTGTATGGTCATAAATTAGTGATT 57.094 29.630 0.00 0.00 0.00 2.57
3842 3935 9.905713 AAGTGTGTATGGTCATAAATTAGTGAT 57.094 29.630 0.00 0.00 0.00 3.06
3843 3936 9.378551 GAAGTGTGTATGGTCATAAATTAGTGA 57.621 33.333 0.00 0.00 0.00 3.41
3844 3937 9.161629 TGAAGTGTGTATGGTCATAAATTAGTG 57.838 33.333 0.00 0.00 0.00 2.74
3845 3938 9.383519 CTGAAGTGTGTATGGTCATAAATTAGT 57.616 33.333 0.00 0.00 0.00 2.24
3846 3939 8.338259 GCTGAAGTGTGTATGGTCATAAATTAG 58.662 37.037 0.00 0.00 0.00 1.73
3847 3940 8.046708 AGCTGAAGTGTGTATGGTCATAAATTA 58.953 33.333 0.00 0.00 0.00 1.40
3848 3941 6.886459 AGCTGAAGTGTGTATGGTCATAAATT 59.114 34.615 0.00 0.00 0.00 1.82
3849 3942 6.418101 AGCTGAAGTGTGTATGGTCATAAAT 58.582 36.000 0.00 0.00 0.00 1.40
3850 3943 5.804639 AGCTGAAGTGTGTATGGTCATAAA 58.195 37.500 0.00 0.00 0.00 1.40
3851 3944 5.420725 AGCTGAAGTGTGTATGGTCATAA 57.579 39.130 0.00 0.00 0.00 1.90
3852 3945 6.731292 ATAGCTGAAGTGTGTATGGTCATA 57.269 37.500 0.00 0.00 0.00 2.15
3853 3946 3.988976 AGCTGAAGTGTGTATGGTCAT 57.011 42.857 0.00 0.00 0.00 3.06
3854 3947 5.420739 TGTATAGCTGAAGTGTGTATGGTCA 59.579 40.000 0.00 0.00 0.00 4.02
3855 3948 5.902681 TGTATAGCTGAAGTGTGTATGGTC 58.097 41.667 0.00 0.00 0.00 4.02
3856 3949 5.932619 TGTATAGCTGAAGTGTGTATGGT 57.067 39.130 0.00 0.00 0.00 3.55
3857 3950 6.515832 TGATGTATAGCTGAAGTGTGTATGG 58.484 40.000 0.00 0.00 0.00 2.74
3858 3951 7.922811 TCTTGATGTATAGCTGAAGTGTGTATG 59.077 37.037 0.00 0.00 0.00 2.39
3859 3952 8.011844 TCTTGATGTATAGCTGAAGTGTGTAT 57.988 34.615 0.00 0.00 0.00 2.29
3860 3953 7.404671 TCTTGATGTATAGCTGAAGTGTGTA 57.595 36.000 0.00 0.00 0.00 2.90
3861 3954 6.286240 TCTTGATGTATAGCTGAAGTGTGT 57.714 37.500 0.00 0.00 0.00 3.72
3862 3955 7.601073 TTTCTTGATGTATAGCTGAAGTGTG 57.399 36.000 0.00 0.00 0.00 3.82
3863 3956 8.671921 CATTTTCTTGATGTATAGCTGAAGTGT 58.328 33.333 0.00 0.00 0.00 3.55
3864 3957 8.671921 ACATTTTCTTGATGTATAGCTGAAGTG 58.328 33.333 0.00 0.00 36.04 3.16
3865 3958 8.798859 ACATTTTCTTGATGTATAGCTGAAGT 57.201 30.769 0.00 0.00 36.04 3.01
3867 3960 9.844790 CAAACATTTTCTTGATGTATAGCTGAA 57.155 29.630 0.00 0.00 36.76 3.02
3868 3961 7.970061 GCAAACATTTTCTTGATGTATAGCTGA 59.030 33.333 0.00 0.00 36.76 4.26
3869 3962 7.044510 CGCAAACATTTTCTTGATGTATAGCTG 60.045 37.037 0.00 0.00 36.76 4.24
3870 3963 6.968904 CGCAAACATTTTCTTGATGTATAGCT 59.031 34.615 0.00 0.00 36.76 3.32
3871 3964 6.747280 ACGCAAACATTTTCTTGATGTATAGC 59.253 34.615 0.00 0.00 36.76 2.97
3872 3965 9.935682 ATACGCAAACATTTTCTTGATGTATAG 57.064 29.630 0.00 0.00 36.76 1.31
3876 3969 9.469807 TTTTATACGCAAACATTTTCTTGATGT 57.530 25.926 0.00 0.00 39.31 3.06
3877 3970 9.726034 GTTTTATACGCAAACATTTTCTTGATG 57.274 29.630 0.00 0.00 34.74 3.07
3878 3971 9.691362 AGTTTTATACGCAAACATTTTCTTGAT 57.309 25.926 2.30 0.00 36.71 2.57
3879 3972 8.963130 CAGTTTTATACGCAAACATTTTCTTGA 58.037 29.630 2.30 0.00 36.71 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.