Multiple sequence alignment - TraesCS3D01G333200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G333200 chr3D 100.000 5246 0 0 1 5246 445109202 445103957 0.000000e+00 9688.0
1 TraesCS3D01G333200 chr3D 96.610 413 11 3 1750 2159 43798012 43797600 0.000000e+00 682.0
2 TraesCS3D01G333200 chr3D 96.324 408 14 1 1753 2159 570039120 570039527 0.000000e+00 669.0
3 TraesCS3D01G333200 chr3D 92.791 430 25 5 1745 2170 510908604 510908177 7.460000e-173 617.0
4 TraesCS3D01G333200 chr3D 86.486 148 16 3 2350 2495 83491926 83492071 5.440000e-35 159.0
5 TraesCS3D01G333200 chr3A 91.079 1659 71 34 128 1741 586795006 586793380 0.000000e+00 2172.0
6 TraesCS3D01G333200 chr3A 91.060 1622 69 29 2645 4236 586792957 586791382 0.000000e+00 2122.0
7 TraesCS3D01G333200 chr3B 89.262 1667 61 46 128 1752 583827776 583826186 0.000000e+00 1978.0
8 TraesCS3D01G333200 chr3B 93.119 1366 49 11 2828 4179 583825927 583824593 0.000000e+00 1960.0
9 TraesCS3D01G333200 chr2D 96.036 1009 38 2 4238 5246 544764778 544763772 0.000000e+00 1640.0
10 TraesCS3D01G333200 chr2D 85.038 782 107 10 4465 5244 375629165 375629938 0.000000e+00 787.0
11 TraesCS3D01G333200 chr2D 95.181 415 17 3 1753 2166 507838194 507838606 0.000000e+00 652.0
12 TraesCS3D01G333200 chr2D 85.616 146 21 0 2350 2495 320177351 320177496 2.530000e-33 154.0
13 TraesCS3D01G333200 chr2D 82.609 92 13 3 2350 2439 589286228 589286138 1.570000e-10 78.7
14 TraesCS3D01G333200 chr1D 95.738 1009 41 2 4238 5246 436340347 436341353 0.000000e+00 1624.0
15 TraesCS3D01G333200 chr1D 95.874 412 13 4 1752 2159 427487168 427487579 0.000000e+00 664.0
16 TraesCS3D01G333200 chr1D 94.595 111 4 2 3 112 282940275 282940166 2.510000e-38 171.0
17 TraesCS3D01G333200 chr1D 93.694 111 6 1 3 112 491426265 491426155 1.170000e-36 165.0
18 TraesCS3D01G333200 chr5A 94.263 1011 57 1 4236 5246 49871969 49872978 0.000000e+00 1544.0
19 TraesCS3D01G333200 chr5A 79.720 143 19 6 1166 1305 706471670 706471805 1.560000e-15 95.3
20 TraesCS3D01G333200 chr5A 83.133 83 14 0 2350 2432 45961340 45961422 5.630000e-10 76.8
21 TraesCS3D01G333200 chr7A 94.345 1008 54 2 4239 5246 695089003 695087999 0.000000e+00 1543.0
22 TraesCS3D01G333200 chr7A 93.750 1008 59 3 4239 5246 694991998 694990995 0.000000e+00 1509.0
23 TraesCS3D01G333200 chr7A 92.650 585 40 2 4239 4823 694838776 694838195 0.000000e+00 839.0
24 TraesCS3D01G333200 chr7A 97.170 106 2 1 1 106 547108050 547107946 1.500000e-40 178.0
25 TraesCS3D01G333200 chr7A 83.562 146 21 3 2350 2495 621568982 621569124 3.300000e-27 134.0
26 TraesCS3D01G333200 chr4B 93.762 1010 58 3 4238 5246 653690667 653689662 0.000000e+00 1511.0
27 TraesCS3D01G333200 chr4B 88.506 87 10 0 2350 2436 620060527 620060441 7.180000e-19 106.0
28 TraesCS3D01G333200 chr5D 96.206 817 28 3 4239 5055 69937409 69936596 0.000000e+00 1334.0
29 TraesCS3D01G333200 chr5D 95.631 412 13 4 1753 2159 332222410 332221999 0.000000e+00 656.0
30 TraesCS3D01G333200 chr5D 94.189 413 21 3 1752 2161 458690988 458690576 1.240000e-175 627.0
31 TraesCS3D01G333200 chr5D 79.319 822 127 37 3281 4085 111995169 111995964 2.150000e-148 536.0
32 TraesCS3D01G333200 chr5D 94.690 113 5 1 1 112 305733191 305733079 1.940000e-39 174.0
33 TraesCS3D01G333200 chr4D 85.832 847 102 14 3258 4089 131041974 131041131 0.000000e+00 883.0
34 TraesCS3D01G333200 chr4D 95.413 109 4 1 4 112 740695 740588 6.980000e-39 172.0
35 TraesCS3D01G333200 chr4A 84.888 847 110 14 3258 4089 435442277 435443120 0.000000e+00 839.0
36 TraesCS3D01G333200 chr4A 77.243 602 102 24 1166 1740 435441094 435441687 2.360000e-83 320.0
37 TraesCS3D01G333200 chr4A 80.741 135 21 5 2371 2501 134541436 134541569 3.340000e-17 100.0
38 TraesCS3D01G333200 chrUn 84.104 887 120 17 3220 4089 59600749 59599867 0.000000e+00 837.0
39 TraesCS3D01G333200 chrUn 82.723 874 130 14 3226 4083 29986589 29987457 0.000000e+00 758.0
40 TraesCS3D01G333200 chrUn 87.896 537 59 5 3556 4089 383555397 383554864 1.240000e-175 627.0
41 TraesCS3D01G333200 chrUn 86.923 520 60 5 3571 4089 362328950 362329462 1.270000e-160 577.0
42 TraesCS3D01G333200 chrUn 77.409 602 100 21 1166 1739 29976033 29976626 5.070000e-85 326.0
43 TraesCS3D01G333200 chr7D 87.593 669 83 0 4576 5244 88150861 88151529 0.000000e+00 776.0
44 TraesCS3D01G333200 chr6D 95.134 411 17 3 1753 2161 178795931 178796340 0.000000e+00 645.0
45 TraesCS3D01G333200 chr6D 94.404 411 18 4 1753 2159 387878378 387877969 1.240000e-175 627.0
46 TraesCS3D01G333200 chr6D 97.170 106 2 1 1 106 435964100 435963996 1.500000e-40 178.0
47 TraesCS3D01G333200 chr1A 94.690 113 5 1 1 112 549487420 549487308 1.940000e-39 174.0
48 TraesCS3D01G333200 chr1A 96.226 106 3 1 1 105 549617647 549617752 6.980000e-39 172.0
49 TraesCS3D01G333200 chr5B 93.694 111 6 1 1 111 471383633 471383742 1.170000e-36 165.0
50 TraesCS3D01G333200 chr5B 81.564 179 25 5 4240 4416 549951487 549951315 1.970000e-29 141.0
51 TraesCS3D01G333200 chr5B 88.119 101 10 2 2352 2452 520902460 520902362 9.230000e-23 119.0
52 TraesCS3D01G333200 chr2B 83.908 87 9 5 2350 2435 657302411 657302493 1.570000e-10 78.7
53 TraesCS3D01G333200 chr6B 93.617 47 2 1 2423 2469 561042474 561042519 9.430000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G333200 chr3D 445103957 445109202 5245 True 9688.0 9688 100.0000 1 5246 1 chr3D.!!$R2 5245
1 TraesCS3D01G333200 chr3A 586791382 586795006 3624 True 2147.0 2172 91.0695 128 4236 2 chr3A.!!$R1 4108
2 TraesCS3D01G333200 chr3B 583824593 583827776 3183 True 1969.0 1978 91.1905 128 4179 2 chr3B.!!$R1 4051
3 TraesCS3D01G333200 chr2D 544763772 544764778 1006 True 1640.0 1640 96.0360 4238 5246 1 chr2D.!!$R1 1008
4 TraesCS3D01G333200 chr2D 375629165 375629938 773 False 787.0 787 85.0380 4465 5244 1 chr2D.!!$F2 779
5 TraesCS3D01G333200 chr1D 436340347 436341353 1006 False 1624.0 1624 95.7380 4238 5246 1 chr1D.!!$F2 1008
6 TraesCS3D01G333200 chr5A 49871969 49872978 1009 False 1544.0 1544 94.2630 4236 5246 1 chr5A.!!$F2 1010
7 TraesCS3D01G333200 chr7A 695087999 695089003 1004 True 1543.0 1543 94.3450 4239 5246 1 chr7A.!!$R4 1007
8 TraesCS3D01G333200 chr7A 694990995 694991998 1003 True 1509.0 1509 93.7500 4239 5246 1 chr7A.!!$R3 1007
9 TraesCS3D01G333200 chr7A 694838195 694838776 581 True 839.0 839 92.6500 4239 4823 1 chr7A.!!$R2 584
10 TraesCS3D01G333200 chr4B 653689662 653690667 1005 True 1511.0 1511 93.7620 4238 5246 1 chr4B.!!$R2 1008
11 TraesCS3D01G333200 chr5D 69936596 69937409 813 True 1334.0 1334 96.2060 4239 5055 1 chr5D.!!$R1 816
12 TraesCS3D01G333200 chr5D 111995169 111995964 795 False 536.0 536 79.3190 3281 4085 1 chr5D.!!$F1 804
13 TraesCS3D01G333200 chr4D 131041131 131041974 843 True 883.0 883 85.8320 3258 4089 1 chr4D.!!$R2 831
14 TraesCS3D01G333200 chr4A 435441094 435443120 2026 False 579.5 839 81.0655 1166 4089 2 chr4A.!!$F2 2923
15 TraesCS3D01G333200 chrUn 59599867 59600749 882 True 837.0 837 84.1040 3220 4089 1 chrUn.!!$R1 869
16 TraesCS3D01G333200 chrUn 29986589 29987457 868 False 758.0 758 82.7230 3226 4083 1 chrUn.!!$F2 857
17 TraesCS3D01G333200 chrUn 383554864 383555397 533 True 627.0 627 87.8960 3556 4089 1 chrUn.!!$R2 533
18 TraesCS3D01G333200 chrUn 362328950 362329462 512 False 577.0 577 86.9230 3571 4089 1 chrUn.!!$F3 518
19 TraesCS3D01G333200 chrUn 29976033 29976626 593 False 326.0 326 77.4090 1166 1739 1 chrUn.!!$F1 573
20 TraesCS3D01G333200 chr7D 88150861 88151529 668 False 776.0 776 87.5930 4576 5244 1 chr7D.!!$F1 668

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
377 396 0.458669 TAGCTAGGTGCCTGCGTAAC 59.541 55.0 4.27 0.0 44.23 2.50 F
1117 1173 0.036010 TCTCAAGCAGCAAGGGTAGC 60.036 55.0 0.00 0.0 0.00 3.58 F
1759 1848 0.319555 TTCCTTCGTTCAGAGTGCGG 60.320 55.0 0.00 0.0 0.00 5.69 F
2130 2224 0.321298 TTTTACTGACCGGGAGCAGC 60.321 55.0 17.73 0.0 35.57 5.25 F
2155 2249 0.764890 CCGGGCTCCAGGATGAATTA 59.235 55.0 0.00 0.0 39.69 1.40 F
2833 3233 1.108776 GTAGGTGCCCTACGTGATGA 58.891 55.0 13.52 0.0 45.49 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2111 2205 0.321298 GCTGCTCCCGGTCAGTAAAA 60.321 55.000 14.47 0.00 33.09 1.52 R
3020 3539 0.454600 GATTAGGCTCGTCCGTGACA 59.545 55.000 0.00 0.00 40.77 3.58 R
3048 3593 1.869132 CGCGGCTACTTTTGCATGC 60.869 57.895 11.82 11.82 0.00 4.06 R
4052 4618 0.384309 CGGCGAGCATGAGGTACTTA 59.616 55.000 0.00 0.00 41.55 2.24 R
4142 4708 3.502211 ACCTGAAATGCCTAACAAGAACG 59.498 43.478 0.00 0.00 0.00 3.95 R
4680 5261 0.605589 CGAACTCAGGCCTCAACTCT 59.394 55.000 0.00 0.00 0.00 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 3.787001 GGAGACGGGCAGGGGAAG 61.787 72.222 0.00 0.00 0.00 3.46
69 70 3.787001 GAGACGGGCAGGGGAAGG 61.787 72.222 0.00 0.00 0.00 3.46
70 71 4.658786 AGACGGGCAGGGGAAGGT 62.659 66.667 0.00 0.00 0.00 3.50
71 72 4.410400 GACGGGCAGGGGAAGGTG 62.410 72.222 0.00 0.00 0.00 4.00
122 123 3.458163 CGCGGGACCCTCTGCTTA 61.458 66.667 9.41 0.00 36.91 3.09
123 124 2.797278 CGCGGGACCCTCTGCTTAT 61.797 63.158 9.41 0.00 36.91 1.73
124 125 1.461091 CGCGGGACCCTCTGCTTATA 61.461 60.000 9.41 0.00 36.91 0.98
125 126 0.977395 GCGGGACCCTCTGCTTATAT 59.023 55.000 9.41 0.00 36.19 0.86
126 127 1.066787 GCGGGACCCTCTGCTTATATC 60.067 57.143 9.41 0.00 36.19 1.63
164 165 1.141858 GGAGGATTTGGCTCTTCCGAT 59.858 52.381 0.00 0.00 37.80 4.18
197 198 4.698304 TCCGTCTTCTTCTCTTCTTCTCTC 59.302 45.833 0.00 0.00 0.00 3.20
199 200 5.183140 CCGTCTTCTTCTCTTCTTCTCTCTT 59.817 44.000 0.00 0.00 0.00 2.85
200 201 6.294508 CCGTCTTCTTCTCTTCTTCTCTCTTT 60.295 42.308 0.00 0.00 0.00 2.52
201 202 6.801862 CGTCTTCTTCTCTTCTTCTCTCTTTC 59.198 42.308 0.00 0.00 0.00 2.62
377 396 0.458669 TAGCTAGGTGCCTGCGTAAC 59.541 55.000 4.27 0.00 44.23 2.50
390 409 2.333926 TGCGTAACTCCAAACTCATCG 58.666 47.619 0.00 0.00 0.00 3.84
416 435 4.466015 TCACCTCTGCATACATACAAGTCA 59.534 41.667 0.00 0.00 0.00 3.41
429 448 1.812571 ACAAGTCATCCATGGCGAAAC 59.187 47.619 6.96 2.54 37.51 2.78
430 449 1.086696 AAGTCATCCATGGCGAAACG 58.913 50.000 6.96 0.00 37.51 3.60
496 516 2.270257 TGTACGTACGTGCTGGCCT 61.270 57.895 31.45 6.99 0.00 5.19
515 535 4.385754 GGCCTAATCAATATCCATCCCTCC 60.386 50.000 0.00 0.00 0.00 4.30
555 580 3.410631 TCCGTGATGGAAAAGTAGCAA 57.589 42.857 0.00 0.00 46.38 3.91
556 581 3.334691 TCCGTGATGGAAAAGTAGCAAG 58.665 45.455 0.00 0.00 46.38 4.01
584 621 4.261801 TCCAGTTACTATCTGCAAAAGCC 58.738 43.478 0.00 0.00 0.00 4.35
605 642 4.202020 GCCAGAGTGATTACTGATGTACGA 60.202 45.833 0.00 0.00 37.25 3.43
624 661 4.058817 ACGAGCTACTTTTTCTTCACCAG 58.941 43.478 0.00 0.00 0.00 4.00
650 687 3.317603 GGGCAATTTGCACTACAATGT 57.682 42.857 22.05 0.00 45.01 2.71
651 688 3.663025 GGGCAATTTGCACTACAATGTT 58.337 40.909 22.05 0.00 45.01 2.71
652 689 3.679502 GGGCAATTTGCACTACAATGTTC 59.320 43.478 22.05 1.07 45.01 3.18
657 694 4.377911 TTTGCACTACAATGTTCGTACG 57.622 40.909 9.53 9.53 38.31 3.67
665 702 2.232941 ACAATGTTCGTACGATCCCACT 59.767 45.455 20.27 3.54 0.00 4.00
808 847 4.617067 GCAGATGCATGATAGCTACGTACT 60.617 45.833 2.46 0.00 41.59 2.73
809 848 5.392057 GCAGATGCATGATAGCTACGTACTA 60.392 44.000 2.46 0.00 41.59 1.82
810 849 6.024664 CAGATGCATGATAGCTACGTACTAC 58.975 44.000 2.46 0.00 34.99 2.73
823 862 6.531594 AGCTACGTACTACGATATAACGCATA 59.468 38.462 15.49 0.00 46.05 3.14
824 863 6.621405 GCTACGTACTACGATATAACGCATAC 59.379 42.308 15.49 2.53 46.05 2.39
847 886 1.872952 TGCATGTTTCAACCAGAGACG 59.127 47.619 0.00 0.00 34.21 4.18
958 1002 1.098050 GGCCATTGCTTCCAGTACTG 58.902 55.000 16.34 16.34 37.74 2.74
972 1018 5.751243 CCAGTACTGGCATATTAAACACC 57.249 43.478 28.48 0.00 44.73 4.16
973 1019 4.578928 CCAGTACTGGCATATTAAACACCC 59.421 45.833 28.48 0.00 44.73 4.61
974 1020 4.272504 CAGTACTGGCATATTAAACACCCG 59.727 45.833 15.49 0.00 0.00 5.28
975 1021 2.650322 ACTGGCATATTAAACACCCGG 58.350 47.619 0.00 0.00 0.00 5.73
1012 1068 3.314357 GGAGCGTTCTACCAACAAACTTT 59.686 43.478 0.00 0.00 0.00 2.66
1085 1141 1.273495 TGCTCTCCCTCATCTTCCACT 60.273 52.381 0.00 0.00 0.00 4.00
1086 1142 1.412343 GCTCTCCCTCATCTTCCACTC 59.588 57.143 0.00 0.00 0.00 3.51
1117 1173 0.036010 TCTCAAGCAGCAAGGGTAGC 60.036 55.000 0.00 0.00 0.00 3.58
1122 1178 2.404995 GCAGCAAGGGTAGCAGCAG 61.405 63.158 0.00 0.00 43.05 4.24
1123 1179 2.045536 AGCAAGGGTAGCAGCAGC 60.046 61.111 0.00 0.00 42.56 5.25
1550 1624 1.151587 ATGGTGGAGGGGTTCCTGT 60.152 57.895 0.00 0.00 46.92 4.00
1598 1672 2.825836 GCAGGCGGATGAAGGTGG 60.826 66.667 0.00 0.00 0.00 4.61
1636 1710 2.472029 GGTCTCATGGAGGAGGAAGAA 58.528 52.381 0.00 0.00 35.58 2.52
1721 1810 3.867857 GAGTTTCTCCAACATCCTCTCC 58.132 50.000 0.00 0.00 37.93 3.71
1725 1814 1.079490 TCTCCAACATCCTCTCCCACT 59.921 52.381 0.00 0.00 0.00 4.00
1756 1845 3.256136 AGGTACTTCCTTCGTTCAGAGTG 59.744 47.826 0.00 0.00 45.67 3.51
1757 1846 2.156343 ACTTCCTTCGTTCAGAGTGC 57.844 50.000 0.00 0.00 0.00 4.40
1758 1847 1.063806 CTTCCTTCGTTCAGAGTGCG 58.936 55.000 0.00 0.00 0.00 5.34
1759 1848 0.319555 TTCCTTCGTTCAGAGTGCGG 60.320 55.000 0.00 0.00 0.00 5.69
1760 1849 2.383527 CCTTCGTTCAGAGTGCGGC 61.384 63.158 0.00 0.00 0.00 6.53
1761 1850 2.720758 CTTCGTTCAGAGTGCGGCG 61.721 63.158 0.51 0.51 0.00 6.46
1762 1851 3.202216 TTCGTTCAGAGTGCGGCGA 62.202 57.895 12.98 0.00 0.00 5.54
1763 1852 2.686956 TTCGTTCAGAGTGCGGCGAA 62.687 55.000 12.98 0.00 36.26 4.70
1764 1853 2.094659 CGTTCAGAGTGCGGCGAAT 61.095 57.895 12.98 0.00 0.00 3.34
1765 1854 1.710339 GTTCAGAGTGCGGCGAATC 59.290 57.895 12.98 4.49 0.00 2.52
1766 1855 0.737715 GTTCAGAGTGCGGCGAATCT 60.738 55.000 12.98 7.15 0.00 2.40
1767 1856 0.737367 TTCAGAGTGCGGCGAATCTG 60.737 55.000 22.43 22.43 40.42 2.90
1775 1864 2.825836 GGCGAATCTGCACCCAGG 60.826 66.667 0.00 0.00 39.61 4.45
1776 1865 3.512516 GCGAATCTGCACCCAGGC 61.513 66.667 0.00 0.00 39.61 4.85
1778 1867 1.817099 CGAATCTGCACCCAGGCTC 60.817 63.158 0.00 0.00 39.61 4.70
1779 1868 1.300963 GAATCTGCACCCAGGCTCA 59.699 57.895 0.00 0.00 39.61 4.26
1780 1869 0.747283 GAATCTGCACCCAGGCTCAG 60.747 60.000 0.00 0.00 39.61 3.35
1783 1872 4.340246 TGCACCCAGGCTCAGCTG 62.340 66.667 7.63 7.63 34.04 4.24
1785 1874 4.340246 CACCCAGGCTCAGCTGCA 62.340 66.667 9.47 0.00 34.04 4.41
1786 1875 4.341783 ACCCAGGCTCAGCTGCAC 62.342 66.667 9.47 2.69 34.04 4.57
1790 1879 4.341783 AGGCTCAGCTGCACCCAC 62.342 66.667 18.16 2.66 34.04 4.61
1793 1882 4.694233 CTCAGCTGCACCCACGCT 62.694 66.667 9.47 0.00 0.00 5.07
1795 1884 4.994471 CAGCTGCACCCACGCTCA 62.994 66.667 0.00 0.00 0.00 4.26
1798 1887 3.046087 CTGCACCCACGCTCACAG 61.046 66.667 0.00 0.00 0.00 3.66
1868 1962 9.950680 AAATTTTGTGGTAGATAATTAGATGCG 57.049 29.630 0.00 0.00 0.00 4.73
1869 1963 8.677148 ATTTTGTGGTAGATAATTAGATGCGT 57.323 30.769 0.00 0.00 0.00 5.24
1870 1964 7.477144 TTTGTGGTAGATAATTAGATGCGTG 57.523 36.000 0.00 0.00 0.00 5.34
1871 1965 6.399639 TGTGGTAGATAATTAGATGCGTGA 57.600 37.500 0.00 0.00 0.00 4.35
1872 1966 6.447162 TGTGGTAGATAATTAGATGCGTGAG 58.553 40.000 0.00 0.00 0.00 3.51
1886 1980 2.601481 CGTGAGCTTCGCTGAAAAAT 57.399 45.000 0.00 0.00 39.88 1.82
1887 1981 2.921126 CGTGAGCTTCGCTGAAAAATT 58.079 42.857 0.00 0.00 39.88 1.82
1888 1982 2.904932 CGTGAGCTTCGCTGAAAAATTC 59.095 45.455 0.00 0.00 39.88 2.17
1889 1983 3.606846 CGTGAGCTTCGCTGAAAAATTCA 60.607 43.478 0.00 0.00 39.88 2.57
1890 1984 4.290155 GTGAGCTTCGCTGAAAAATTCAA 58.710 39.130 0.00 0.00 39.88 2.69
1891 1985 4.147133 GTGAGCTTCGCTGAAAAATTCAAC 59.853 41.667 0.00 0.00 39.88 3.18
1892 1986 4.036734 TGAGCTTCGCTGAAAAATTCAACT 59.963 37.500 0.00 0.00 39.88 3.16
1893 1987 4.540824 AGCTTCGCTGAAAAATTCAACTC 58.459 39.130 0.00 0.00 39.58 3.01
1894 1988 3.358993 GCTTCGCTGAAAAATTCAACTCG 59.641 43.478 0.00 0.00 39.58 4.18
1895 1989 4.527564 CTTCGCTGAAAAATTCAACTCGT 58.472 39.130 0.00 0.00 39.58 4.18
1896 1990 4.545823 TCGCTGAAAAATTCAACTCGTT 57.454 36.364 0.00 0.00 39.58 3.85
1897 1991 4.915704 TCGCTGAAAAATTCAACTCGTTT 58.084 34.783 0.00 0.00 39.58 3.60
1898 1992 4.732923 TCGCTGAAAAATTCAACTCGTTTG 59.267 37.500 0.00 0.00 39.58 2.93
1899 1993 4.085619 CGCTGAAAAATTCAACTCGTTTGG 60.086 41.667 0.00 0.00 39.58 3.28
1900 1994 5.040635 GCTGAAAAATTCAACTCGTTTGGA 58.959 37.500 0.00 0.00 39.58 3.53
1901 1995 5.051708 GCTGAAAAATTCAACTCGTTTGGAC 60.052 40.000 0.00 0.00 39.58 4.02
1902 1996 5.955488 TGAAAAATTCAACTCGTTTGGACA 58.045 33.333 0.00 0.00 36.59 4.02
1903 1997 6.568869 TGAAAAATTCAACTCGTTTGGACAT 58.431 32.000 0.00 0.00 36.59 3.06
1904 1998 7.038659 TGAAAAATTCAACTCGTTTGGACATT 58.961 30.769 0.00 0.00 36.59 2.71
1905 1999 7.547370 TGAAAAATTCAACTCGTTTGGACATTT 59.453 29.630 0.00 0.00 36.59 2.32
1906 2000 6.826893 AAATTCAACTCGTTTGGACATTTG 57.173 33.333 0.69 0.00 35.69 2.32
1907 2001 5.766150 ATTCAACTCGTTTGGACATTTGA 57.234 34.783 0.69 0.00 35.69 2.69
1908 2002 4.811555 TCAACTCGTTTGGACATTTGAG 57.188 40.909 0.69 0.00 35.69 3.02
1909 2003 3.003275 TCAACTCGTTTGGACATTTGAGC 59.997 43.478 0.69 0.00 35.69 4.26
1910 2004 2.571212 ACTCGTTTGGACATTTGAGCA 58.429 42.857 0.00 0.00 0.00 4.26
1911 2005 2.948979 ACTCGTTTGGACATTTGAGCAA 59.051 40.909 0.00 0.00 0.00 3.91
1912 2006 3.003689 ACTCGTTTGGACATTTGAGCAAG 59.996 43.478 0.00 0.00 0.00 4.01
1913 2007 2.948979 TCGTTTGGACATTTGAGCAAGT 59.051 40.909 0.00 0.00 0.00 3.16
1914 2008 3.003275 TCGTTTGGACATTTGAGCAAGTC 59.997 43.478 0.00 0.00 0.00 3.01
1915 2009 3.003689 CGTTTGGACATTTGAGCAAGTCT 59.996 43.478 0.00 0.00 0.00 3.24
1916 2010 4.293415 GTTTGGACATTTGAGCAAGTCTG 58.707 43.478 0.00 0.00 0.00 3.51
1917 2011 3.213206 TGGACATTTGAGCAAGTCTGT 57.787 42.857 0.00 0.00 0.00 3.41
1918 2012 2.880268 TGGACATTTGAGCAAGTCTGTG 59.120 45.455 0.00 0.00 0.00 3.66
1919 2013 2.351157 GGACATTTGAGCAAGTCTGTGC 60.351 50.000 0.00 0.00 45.28 4.57
1942 2036 4.584327 AAAAAGACAAAATCGGGGTCTG 57.416 40.909 0.00 0.00 40.80 3.51
1943 2037 2.951229 AAGACAAAATCGGGGTCTGT 57.049 45.000 0.00 0.00 40.80 3.41
1944 2038 4.360951 AAAGACAAAATCGGGGTCTGTA 57.639 40.909 0.00 0.00 40.80 2.74
1945 2039 4.360951 AAGACAAAATCGGGGTCTGTAA 57.639 40.909 0.00 0.00 40.80 2.41
1946 2040 4.360951 AGACAAAATCGGGGTCTGTAAA 57.639 40.909 0.00 0.00 40.21 2.01
1947 2041 4.721132 AGACAAAATCGGGGTCTGTAAAA 58.279 39.130 0.00 0.00 40.21 1.52
1948 2042 5.134661 AGACAAAATCGGGGTCTGTAAAAA 58.865 37.500 0.00 0.00 40.21 1.94
1975 2069 9.783256 AGTTTACTGTTTATGAACTGTTTTGAC 57.217 29.630 16.17 10.63 42.91 3.18
1976 2070 9.016623 GTTTACTGTTTATGAACTGTTTTGACC 57.983 33.333 16.17 0.00 42.91 4.02
1977 2071 6.144078 ACTGTTTATGAACTGTTTTGACCC 57.856 37.500 7.02 0.00 42.91 4.46
1978 2072 5.176407 TGTTTATGAACTGTTTTGACCCG 57.824 39.130 1.75 0.00 36.70 5.28
1979 2073 4.882427 TGTTTATGAACTGTTTTGACCCGA 59.118 37.500 1.75 0.00 36.70 5.14
1980 2074 5.533154 TGTTTATGAACTGTTTTGACCCGAT 59.467 36.000 1.75 0.00 36.70 4.18
1981 2075 6.039941 TGTTTATGAACTGTTTTGACCCGATT 59.960 34.615 1.75 0.00 36.70 3.34
1982 2076 6.642707 TTATGAACTGTTTTGACCCGATTT 57.357 33.333 0.00 0.00 0.00 2.17
1983 2077 4.300189 TGAACTGTTTTGACCCGATTTG 57.700 40.909 0.00 0.00 0.00 2.32
1984 2078 3.697045 TGAACTGTTTTGACCCGATTTGT 59.303 39.130 0.00 0.00 0.00 2.83
1985 2079 3.982576 ACTGTTTTGACCCGATTTGTC 57.017 42.857 0.00 0.00 0.00 3.18
1986 2080 3.551846 ACTGTTTTGACCCGATTTGTCT 58.448 40.909 0.00 0.00 33.83 3.41
1987 2081 3.951680 ACTGTTTTGACCCGATTTGTCTT 59.048 39.130 0.00 0.00 33.83 3.01
1988 2082 4.401202 ACTGTTTTGACCCGATTTGTCTTT 59.599 37.500 0.00 0.00 33.83 2.52
1989 2083 5.105513 ACTGTTTTGACCCGATTTGTCTTTT 60.106 36.000 0.00 0.00 33.83 2.27
1990 2084 5.725362 TGTTTTGACCCGATTTGTCTTTTT 58.275 33.333 0.00 0.00 33.83 1.94
2007 2101 3.478857 TTTTTGCCGAGACCTACTCAA 57.521 42.857 0.00 0.00 45.14 3.02
2008 2102 3.478857 TTTTGCCGAGACCTACTCAAA 57.521 42.857 0.00 0.00 45.14 2.69
2009 2103 3.695830 TTTGCCGAGACCTACTCAAAT 57.304 42.857 0.00 0.00 45.14 2.32
2010 2104 4.811969 TTTGCCGAGACCTACTCAAATA 57.188 40.909 0.00 0.00 45.14 1.40
2011 2105 5.353394 TTTGCCGAGACCTACTCAAATAT 57.647 39.130 0.00 0.00 45.14 1.28
2012 2106 4.585955 TGCCGAGACCTACTCAAATATC 57.414 45.455 0.00 0.00 45.14 1.63
2013 2107 3.321111 TGCCGAGACCTACTCAAATATCC 59.679 47.826 0.00 0.00 45.14 2.59
2014 2108 3.321111 GCCGAGACCTACTCAAATATCCA 59.679 47.826 0.00 0.00 45.14 3.41
2015 2109 4.202223 GCCGAGACCTACTCAAATATCCAA 60.202 45.833 0.00 0.00 45.14 3.53
2016 2110 5.684030 GCCGAGACCTACTCAAATATCCAAA 60.684 44.000 0.00 0.00 45.14 3.28
2017 2111 6.525629 CCGAGACCTACTCAAATATCCAAAT 58.474 40.000 0.00 0.00 45.14 2.32
2018 2112 6.425114 CCGAGACCTACTCAAATATCCAAATG 59.575 42.308 0.00 0.00 45.14 2.32
2019 2113 7.210174 CGAGACCTACTCAAATATCCAAATGA 58.790 38.462 0.00 0.00 45.14 2.57
2020 2114 7.383572 CGAGACCTACTCAAATATCCAAATGAG 59.616 40.741 0.00 0.00 45.14 2.90
2035 2129 5.009048 CAAATGAGTTGAAATTTGGTGCG 57.991 39.130 0.00 0.00 39.87 5.34
2036 2130 2.791383 TGAGTTGAAATTTGGTGCGG 57.209 45.000 0.00 0.00 0.00 5.69
2037 2131 2.302260 TGAGTTGAAATTTGGTGCGGA 58.698 42.857 0.00 0.00 0.00 5.54
2038 2132 2.034053 TGAGTTGAAATTTGGTGCGGAC 59.966 45.455 0.00 0.00 0.00 4.79
2039 2133 1.339929 AGTTGAAATTTGGTGCGGACC 59.660 47.619 20.69 20.69 43.48 4.46
2040 2134 1.339929 GTTGAAATTTGGTGCGGACCT 59.660 47.619 27.28 6.02 43.58 3.85
2041 2135 1.243902 TGAAATTTGGTGCGGACCTC 58.756 50.000 27.28 15.85 43.58 3.85
2042 2136 1.243902 GAAATTTGGTGCGGACCTCA 58.756 50.000 27.28 13.76 43.58 3.86
2043 2137 0.958822 AAATTTGGTGCGGACCTCAC 59.041 50.000 27.28 6.02 43.58 3.51
2044 2138 1.234615 AATTTGGTGCGGACCTCACG 61.235 55.000 27.28 0.00 43.58 4.35
2051 2145 4.277239 CGGACCTCACGCATCAAA 57.723 55.556 0.00 0.00 0.00 2.69
2052 2146 2.767536 CGGACCTCACGCATCAAAT 58.232 52.632 0.00 0.00 0.00 2.32
2053 2147 1.086696 CGGACCTCACGCATCAAATT 58.913 50.000 0.00 0.00 0.00 1.82
2054 2148 2.276201 CGGACCTCACGCATCAAATTA 58.724 47.619 0.00 0.00 0.00 1.40
2055 2149 2.872245 CGGACCTCACGCATCAAATTAT 59.128 45.455 0.00 0.00 0.00 1.28
2056 2150 3.059597 CGGACCTCACGCATCAAATTATC 60.060 47.826 0.00 0.00 0.00 1.75
2057 2151 4.130118 GGACCTCACGCATCAAATTATCT 58.870 43.478 0.00 0.00 0.00 1.98
2058 2152 5.297547 GGACCTCACGCATCAAATTATCTA 58.702 41.667 0.00 0.00 0.00 1.98
2059 2153 5.177696 GGACCTCACGCATCAAATTATCTAC 59.822 44.000 0.00 0.00 0.00 2.59
2060 2154 5.057149 ACCTCACGCATCAAATTATCTACC 58.943 41.667 0.00 0.00 0.00 3.18
2061 2155 5.056480 CCTCACGCATCAAATTATCTACCA 58.944 41.667 0.00 0.00 0.00 3.25
2062 2156 5.050091 CCTCACGCATCAAATTATCTACCAC 60.050 44.000 0.00 0.00 0.00 4.16
2063 2157 5.423886 TCACGCATCAAATTATCTACCACA 58.576 37.500 0.00 0.00 0.00 4.17
2064 2158 5.293324 TCACGCATCAAATTATCTACCACAC 59.707 40.000 0.00 0.00 0.00 3.82
2065 2159 5.064579 CACGCATCAAATTATCTACCACACA 59.935 40.000 0.00 0.00 0.00 3.72
2066 2160 5.645929 ACGCATCAAATTATCTACCACACAA 59.354 36.000 0.00 0.00 0.00 3.33
2067 2161 6.150307 ACGCATCAAATTATCTACCACACAAA 59.850 34.615 0.00 0.00 0.00 2.83
2068 2162 7.026562 CGCATCAAATTATCTACCACACAAAA 58.973 34.615 0.00 0.00 0.00 2.44
2069 2163 7.540400 CGCATCAAATTATCTACCACACAAAAA 59.460 33.333 0.00 0.00 0.00 1.94
2129 2223 2.178912 TTTTTACTGACCGGGAGCAG 57.821 50.000 16.62 16.62 38.10 4.24
2130 2224 0.321298 TTTTACTGACCGGGAGCAGC 60.321 55.000 17.73 0.00 35.57 5.25
2131 2225 1.192146 TTTACTGACCGGGAGCAGCT 61.192 55.000 17.73 0.00 35.57 4.24
2132 2226 1.888436 TTACTGACCGGGAGCAGCTG 61.888 60.000 10.11 10.11 35.57 4.24
2133 2227 2.781431 TACTGACCGGGAGCAGCTGA 62.781 60.000 20.43 0.00 35.57 4.26
2134 2228 3.368190 CTGACCGGGAGCAGCTGAG 62.368 68.421 20.43 0.00 0.00 3.35
2135 2229 4.828925 GACCGGGAGCAGCTGAGC 62.829 72.222 20.43 7.89 0.00 4.26
2152 2246 3.089874 CCCGGGCTCCAGGATGAA 61.090 66.667 8.08 0.00 39.69 2.57
2153 2247 2.455565 CCCGGGCTCCAGGATGAAT 61.456 63.158 8.08 0.00 39.69 2.57
2154 2248 1.533711 CCGGGCTCCAGGATGAATT 59.466 57.895 0.00 0.00 39.69 2.17
2155 2249 0.764890 CCGGGCTCCAGGATGAATTA 59.235 55.000 0.00 0.00 39.69 1.40
2158 2252 2.704572 GGGCTCCAGGATGAATTATCG 58.295 52.381 0.00 0.00 39.69 2.92
2181 2275 8.415192 TCGCTTCGTTCACTATTATAATGTTT 57.585 30.769 8.28 0.00 0.00 2.83
2184 2278 9.982291 GCTTCGTTCACTATTATAATGTTTCAA 57.018 29.630 8.28 0.00 0.00 2.69
2246 2344 8.689972 AGTCTTTTTGTTCAATCATTTCAGTCT 58.310 29.630 0.00 0.00 0.00 3.24
2247 2345 8.749499 GTCTTTTTGTTCAATCATTTCAGTCTG 58.251 33.333 0.00 0.00 0.00 3.51
2327 2428 5.595542 ACGGAGCACTACTGTACCATTATTA 59.404 40.000 0.00 0.00 0.00 0.98
2328 2429 6.267014 ACGGAGCACTACTGTACCATTATTAT 59.733 38.462 0.00 0.00 0.00 1.28
2329 2430 7.152645 CGGAGCACTACTGTACCATTATTATT 58.847 38.462 0.00 0.00 0.00 1.40
2330 2431 7.656137 CGGAGCACTACTGTACCATTATTATTT 59.344 37.037 0.00 0.00 0.00 1.40
2331 2432 9.991906 GGAGCACTACTGTACCATTATTATTTA 57.008 33.333 0.00 0.00 0.00 1.40
2352 2453 7.724305 TTTAAGTTTTGCTAAGTCTCGATGT 57.276 32.000 0.00 0.00 0.00 3.06
2353 2454 5.847670 AAGTTTTGCTAAGTCTCGATGTC 57.152 39.130 0.00 0.00 0.00 3.06
2354 2455 5.140747 AGTTTTGCTAAGTCTCGATGTCT 57.859 39.130 0.00 0.00 0.00 3.41
2355 2456 5.164954 AGTTTTGCTAAGTCTCGATGTCTC 58.835 41.667 0.00 0.00 0.00 3.36
2356 2457 4.783764 TTTGCTAAGTCTCGATGTCTCA 57.216 40.909 0.00 0.00 0.00 3.27
2357 2458 4.362932 TTGCTAAGTCTCGATGTCTCAG 57.637 45.455 0.00 0.00 0.00 3.35
2358 2459 3.348119 TGCTAAGTCTCGATGTCTCAGT 58.652 45.455 0.00 0.00 0.00 3.41
2359 2460 3.375610 TGCTAAGTCTCGATGTCTCAGTC 59.624 47.826 0.00 0.00 0.00 3.51
2360 2461 3.375610 GCTAAGTCTCGATGTCTCAGTCA 59.624 47.826 0.00 0.00 0.00 3.41
2361 2462 4.142578 GCTAAGTCTCGATGTCTCAGTCAA 60.143 45.833 0.00 0.00 0.00 3.18
2362 2463 5.449862 GCTAAGTCTCGATGTCTCAGTCAAT 60.450 44.000 0.00 0.00 0.00 2.57
2363 2464 4.368874 AGTCTCGATGTCTCAGTCAATG 57.631 45.455 0.00 0.00 0.00 2.82
2364 2465 3.761218 AGTCTCGATGTCTCAGTCAATGT 59.239 43.478 0.00 0.00 0.00 2.71
2365 2466 4.219507 AGTCTCGATGTCTCAGTCAATGTT 59.780 41.667 0.00 0.00 0.00 2.71
2366 2467 5.416013 AGTCTCGATGTCTCAGTCAATGTTA 59.584 40.000 0.00 0.00 0.00 2.41
2367 2468 6.096141 AGTCTCGATGTCTCAGTCAATGTTAT 59.904 38.462 0.00 0.00 0.00 1.89
2368 2469 6.416455 GTCTCGATGTCTCAGTCAATGTTATC 59.584 42.308 0.00 0.00 0.00 1.75
2369 2470 5.273944 TCGATGTCTCAGTCAATGTTATCG 58.726 41.667 0.00 0.00 37.00 2.92
2370 2471 5.037385 CGATGTCTCAGTCAATGTTATCGT 58.963 41.667 0.00 0.00 32.64 3.73
2371 2472 5.172232 CGATGTCTCAGTCAATGTTATCGTC 59.828 44.000 0.00 0.00 32.64 4.20
2372 2473 4.744570 TGTCTCAGTCAATGTTATCGTCC 58.255 43.478 0.00 0.00 0.00 4.79
2373 2474 4.462834 TGTCTCAGTCAATGTTATCGTCCT 59.537 41.667 0.00 0.00 0.00 3.85
2374 2475 5.047306 TGTCTCAGTCAATGTTATCGTCCTT 60.047 40.000 0.00 0.00 0.00 3.36
2375 2476 5.869888 GTCTCAGTCAATGTTATCGTCCTTT 59.130 40.000 0.00 0.00 0.00 3.11
2376 2477 5.869344 TCTCAGTCAATGTTATCGTCCTTTG 59.131 40.000 0.00 0.00 0.00 2.77
2377 2478 5.789521 TCAGTCAATGTTATCGTCCTTTGA 58.210 37.500 0.00 0.00 0.00 2.69
2378 2479 6.406370 TCAGTCAATGTTATCGTCCTTTGAT 58.594 36.000 0.00 0.00 30.53 2.57
2379 2480 6.878923 TCAGTCAATGTTATCGTCCTTTGATT 59.121 34.615 0.00 0.00 30.53 2.57
2380 2481 7.390440 TCAGTCAATGTTATCGTCCTTTGATTT 59.610 33.333 0.00 0.00 30.53 2.17
2381 2482 8.023128 CAGTCAATGTTATCGTCCTTTGATTTT 58.977 33.333 0.00 0.00 30.53 1.82
2382 2483 8.023128 AGTCAATGTTATCGTCCTTTGATTTTG 58.977 33.333 0.00 0.00 30.53 2.44
2383 2484 6.806249 TCAATGTTATCGTCCTTTGATTTTGC 59.194 34.615 0.00 0.00 0.00 3.68
2384 2485 5.697473 TGTTATCGTCCTTTGATTTTGCA 57.303 34.783 0.00 0.00 0.00 4.08
2385 2486 6.266168 TGTTATCGTCCTTTGATTTTGCAT 57.734 33.333 0.00 0.00 0.00 3.96
2386 2487 6.092092 TGTTATCGTCCTTTGATTTTGCATG 58.908 36.000 0.00 0.00 0.00 4.06
2387 2488 3.574284 TCGTCCTTTGATTTTGCATGG 57.426 42.857 0.00 0.00 0.00 3.66
2388 2489 3.153130 TCGTCCTTTGATTTTGCATGGA 58.847 40.909 0.00 0.00 0.00 3.41
2389 2490 3.191162 TCGTCCTTTGATTTTGCATGGAG 59.809 43.478 0.00 0.00 0.00 3.86
2390 2491 3.191162 CGTCCTTTGATTTTGCATGGAGA 59.809 43.478 0.00 0.00 0.00 3.71
2391 2492 4.142315 CGTCCTTTGATTTTGCATGGAGAT 60.142 41.667 0.00 0.00 0.00 2.75
2392 2493 5.622914 CGTCCTTTGATTTTGCATGGAGATT 60.623 40.000 0.00 0.00 0.00 2.40
2393 2494 5.809051 GTCCTTTGATTTTGCATGGAGATTC 59.191 40.000 0.00 0.00 0.00 2.52
2394 2495 4.802039 CCTTTGATTTTGCATGGAGATTCG 59.198 41.667 0.00 0.00 0.00 3.34
2395 2496 5.389859 TTTGATTTTGCATGGAGATTCGT 57.610 34.783 0.00 0.00 0.00 3.85
2396 2497 6.404623 CCTTTGATTTTGCATGGAGATTCGTA 60.405 38.462 0.00 0.00 0.00 3.43
2397 2498 5.484173 TGATTTTGCATGGAGATTCGTAC 57.516 39.130 0.00 0.00 0.00 3.67
2398 2499 4.940654 TGATTTTGCATGGAGATTCGTACA 59.059 37.500 0.00 0.00 0.00 2.90
2399 2500 5.414144 TGATTTTGCATGGAGATTCGTACAA 59.586 36.000 0.00 0.00 0.00 2.41
2400 2501 5.895636 TTTTGCATGGAGATTCGTACAAT 57.104 34.783 0.00 0.00 0.00 2.71
2401 2502 5.895636 TTTGCATGGAGATTCGTACAATT 57.104 34.783 0.00 0.00 0.00 2.32
2402 2503 5.895636 TTGCATGGAGATTCGTACAATTT 57.104 34.783 0.00 0.00 0.00 1.82
2403 2504 5.895636 TGCATGGAGATTCGTACAATTTT 57.104 34.783 0.00 0.00 0.00 1.82
2404 2505 6.266168 TGCATGGAGATTCGTACAATTTTT 57.734 33.333 0.00 0.00 0.00 1.94
2466 2567 8.747538 ATCACTTGACTAAAACTTGGTTAAGT 57.252 30.769 7.08 7.08 46.61 2.24
2467 2568 8.205131 TCACTTGACTAAAACTTGGTTAAGTC 57.795 34.615 9.20 8.31 43.87 3.01
2468 2569 8.044908 TCACTTGACTAAAACTTGGTTAAGTCT 58.955 33.333 18.07 4.95 43.87 3.24
2469 2570 9.321562 CACTTGACTAAAACTTGGTTAAGTCTA 57.678 33.333 18.07 13.30 43.87 2.59
2470 2571 9.895138 ACTTGACTAAAACTTGGTTAAGTCTAA 57.105 29.630 18.07 12.89 43.87 2.10
2489 2590 8.605325 AGTCTAAATAAACTAAGACCTAGCCA 57.395 34.615 0.00 0.00 39.33 4.75
2490 2591 8.476447 AGTCTAAATAAACTAAGACCTAGCCAC 58.524 37.037 0.00 0.00 39.33 5.01
2491 2592 8.255905 GTCTAAATAAACTAAGACCTAGCCACA 58.744 37.037 0.00 0.00 33.74 4.17
2492 2593 8.255905 TCTAAATAAACTAAGACCTAGCCACAC 58.744 37.037 0.00 0.00 0.00 3.82
2493 2594 3.697619 AAACTAAGACCTAGCCACACC 57.302 47.619 0.00 0.00 0.00 4.16
2494 2595 1.569653 ACTAAGACCTAGCCACACCC 58.430 55.000 0.00 0.00 0.00 4.61
2495 2596 1.203262 ACTAAGACCTAGCCACACCCA 60.203 52.381 0.00 0.00 0.00 4.51
2585 2966 5.613329 ACCAGTTCATGCATGATTTGTTTT 58.387 33.333 29.13 13.39 36.56 2.43
2586 2967 6.757237 ACCAGTTCATGCATGATTTGTTTTA 58.243 32.000 29.13 9.73 36.56 1.52
2604 2985 8.775220 TTGTTTTATGTTTCTTGTCATACGTG 57.225 30.769 0.00 0.00 0.00 4.49
2605 2986 8.144155 TGTTTTATGTTTCTTGTCATACGTGA 57.856 30.769 0.00 0.00 0.00 4.35
2612 2993 8.144155 TGTTTCTTGTCATACGTGAATACAAA 57.856 30.769 0.00 0.00 35.80 2.83
2613 2994 8.279800 TGTTTCTTGTCATACGTGAATACAAAG 58.720 33.333 0.00 0.00 35.80 2.77
2627 3008 9.352163 CGTGAATACAAAGTTTTTATTTTGTGC 57.648 29.630 11.60 3.78 44.63 4.57
2644 3025 8.697846 ATTTTGTGCAATCAATACATTCAGAG 57.302 30.769 0.00 0.00 0.00 3.35
2645 3026 6.822667 TTGTGCAATCAATACATTCAGAGT 57.177 33.333 0.00 0.00 0.00 3.24
2646 3027 7.920160 TTGTGCAATCAATACATTCAGAGTA 57.080 32.000 0.00 0.00 0.00 2.59
2647 3028 8.510243 TTGTGCAATCAATACATTCAGAGTAT 57.490 30.769 0.00 0.00 33.79 2.12
2648 3029 8.510243 TGTGCAATCAATACATTCAGAGTATT 57.490 30.769 0.00 0.00 41.50 1.89
2649 3030 9.612066 TGTGCAATCAATACATTCAGAGTATTA 57.388 29.630 0.00 0.00 39.46 0.98
2712 3093 2.030946 GCACGCATGATGGTCTTAAGAC 59.969 50.000 24.73 24.73 44.04 3.01
2713 3094 2.282555 CACGCATGATGGTCTTAAGACG 59.717 50.000 25.44 15.68 45.65 4.18
2714 3095 2.094182 ACGCATGATGGTCTTAAGACGT 60.094 45.455 25.44 18.01 45.65 4.34
2716 3097 3.370978 CGCATGATGGTCTTAAGACGTTT 59.629 43.478 25.44 14.55 45.65 3.60
2772 3164 6.150140 GCTACAAAATTAGGCATATGAGGAGG 59.850 42.308 6.97 0.00 0.00 4.30
2773 3165 6.018433 ACAAAATTAGGCATATGAGGAGGT 57.982 37.500 6.97 0.00 0.00 3.85
2774 3166 7.149202 ACAAAATTAGGCATATGAGGAGGTA 57.851 36.000 6.97 0.00 0.00 3.08
2783 3175 4.282195 GCATATGAGGAGGTAGTAAGTGCT 59.718 45.833 6.97 0.00 0.00 4.40
2795 3187 4.727507 AGTAAGTGCTCACGATTCAGAT 57.272 40.909 0.00 0.00 36.20 2.90
2807 3199 7.596621 GCTCACGATTCAGATATTTCATCTGTA 59.403 37.037 12.62 5.34 44.30 2.74
2823 3223 6.354130 TCATCTGTAAAAATAGTAGGTGCCC 58.646 40.000 0.00 0.00 0.00 5.36
2833 3233 1.108776 GTAGGTGCCCTACGTGATGA 58.891 55.000 13.52 0.00 45.49 2.92
2839 3239 1.141019 CCCTACGTGATGACCGTGG 59.859 63.158 0.00 0.00 39.22 4.94
2887 3288 4.560716 GCTTGGTTTACCCTTTTTGCTAGG 60.561 45.833 0.00 0.00 34.29 3.02
2890 3291 3.189910 GGTTTACCCTTTTTGCTAGGTCG 59.810 47.826 0.00 0.00 33.70 4.79
2891 3293 2.773993 TACCCTTTTTGCTAGGTCGG 57.226 50.000 0.00 0.00 33.70 4.79
2917 3319 5.560183 CGTGATAATTAAATTCCCGCCTGAC 60.560 44.000 0.00 0.00 0.00 3.51
2919 3321 1.675552 ATTAAATTCCCGCCTGACCG 58.324 50.000 0.00 0.00 0.00 4.79
2922 3324 3.622060 AATTCCCGCCTGACCGTGG 62.622 63.158 0.00 0.00 0.00 4.94
2927 3329 2.264480 CGCCTGACCGTGGAATCA 59.736 61.111 0.00 0.00 0.00 2.57
2928 3330 1.153369 CGCCTGACCGTGGAATCAT 60.153 57.895 0.00 0.00 0.00 2.45
2932 3334 2.923121 CCTGACCGTGGAATCATTCAT 58.077 47.619 0.00 0.00 0.00 2.57
2933 3335 2.615447 CCTGACCGTGGAATCATTCATG 59.385 50.000 0.00 0.00 0.00 3.07
2934 3336 3.534554 CTGACCGTGGAATCATTCATGA 58.465 45.455 0.00 0.00 41.70 3.07
3002 3521 4.821805 TCTTCAATGAAACAGTTGGTCTCC 59.178 41.667 0.00 0.00 0.00 3.71
3020 3539 2.816087 CTCCTGCACAAGTAGTTGCATT 59.184 45.455 10.30 0.00 37.14 3.56
3048 3593 3.491104 GGACGAGCCTAATCACCTTACTG 60.491 52.174 0.00 0.00 0.00 2.74
3060 3605 4.393834 TCACCTTACTGCATGCAAAAGTA 58.606 39.130 27.77 21.38 0.00 2.24
3159 3705 9.020813 CGTCGTACTGTAGTTAGTTAGTATACA 57.979 37.037 5.50 0.00 32.19 2.29
3204 3752 5.576447 AACTTGTGACCCTTTACTTTGTG 57.424 39.130 0.00 0.00 0.00 3.33
3252 3801 2.029844 GTGACGCAGGAGGACAAGC 61.030 63.158 0.00 0.00 0.00 4.01
3476 4029 2.927856 TCTTGGCGGCTCAAGGGA 60.928 61.111 22.39 9.07 43.05 4.20
3644 4206 2.256764 CTCATCTCGCCGATCGGG 59.743 66.667 33.98 23.49 40.87 5.14
4052 4618 1.637553 ACCATGCTCACAAGGAAGGAT 59.362 47.619 0.00 0.00 36.75 3.24
4142 4708 3.793797 GGGAGAAGAGCTCACTAGTTC 57.206 52.381 17.77 10.41 43.99 3.01
4161 4727 4.819630 AGTTCGTTCTTGTTAGGCATTTCA 59.180 37.500 0.00 0.00 0.00 2.69
4167 4733 4.079253 TCTTGTTAGGCATTTCAGGTTCC 58.921 43.478 0.00 0.00 0.00 3.62
4169 4735 1.743394 GTTAGGCATTTCAGGTTCCGG 59.257 52.381 0.00 0.00 0.00 5.14
4190 4756 8.735692 TCCGGTTTATTTTAGTATTAACCTGG 57.264 34.615 0.00 0.00 35.87 4.45
4211 4777 1.344114 TGTTAGGTTAGTTTCCCGCGT 59.656 47.619 4.92 0.00 0.00 6.01
4212 4778 2.224257 TGTTAGGTTAGTTTCCCGCGTT 60.224 45.455 4.92 0.00 0.00 4.84
4213 4779 2.807967 GTTAGGTTAGTTTCCCGCGTTT 59.192 45.455 4.92 0.00 0.00 3.60
4250 4816 7.615582 TTCAGATGAAAAGAGATAAACGCAT 57.384 32.000 0.00 0.00 0.00 4.73
4256 4822 7.376435 TGAAAAGAGATAAACGCATCATTGA 57.624 32.000 0.00 0.00 0.00 2.57
4367 4933 2.546778 GTCAATATCCCGTTTCGAGCA 58.453 47.619 0.00 0.00 0.00 4.26
4398 4964 2.031012 CGTGGCTGGCTGACTCAA 59.969 61.111 2.00 0.00 0.00 3.02
4399 4965 1.597854 CGTGGCTGGCTGACTCAAA 60.598 57.895 2.00 0.00 0.00 2.69
4411 4977 1.707989 TGACTCAAATTGGGCCCACTA 59.292 47.619 28.70 12.51 0.00 2.74
4455 5021 1.712018 GCGGCCCCGTCAGTATTTTC 61.712 60.000 8.66 0.00 42.09 2.29
4461 5027 1.129811 CCCGTCAGTATTTTCGGTTGC 59.870 52.381 0.00 0.00 41.17 4.17
4527 5096 2.436646 AGCCCGATTCGTGCCAAG 60.437 61.111 9.93 0.00 29.06 3.61
4563 5132 3.445450 TCTCACTTCATCCTCTCTTTCGG 59.555 47.826 0.00 0.00 0.00 4.30
4988 5569 0.459585 GCGACGATCCAGTTTAGCCA 60.460 55.000 0.00 0.00 0.00 4.75
5040 5621 7.515684 GCGTCGTCTTTGAAGTTTTTAACTAGA 60.516 37.037 0.00 0.00 41.91 2.43
5141 5722 2.039216 TCGTTAAGATGGTGAAGCCCAA 59.961 45.455 0.00 0.00 38.20 4.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 3.787001 CTTCCCCTGCCCGTCTCC 61.787 72.222 0.00 0.00 0.00 3.71
52 53 3.787001 CCTTCCCCTGCCCGTCTC 61.787 72.222 0.00 0.00 0.00 3.36
53 54 4.658786 ACCTTCCCCTGCCCGTCT 62.659 66.667 0.00 0.00 0.00 4.18
54 55 4.410400 CACCTTCCCCTGCCCGTC 62.410 72.222 0.00 0.00 0.00 4.79
104 105 3.820084 TATAAGCAGAGGGTCCCGCGA 62.820 57.143 8.23 0.00 0.00 5.87
105 106 1.461091 TATAAGCAGAGGGTCCCGCG 61.461 60.000 5.94 0.00 0.00 6.46
106 107 0.977395 ATATAAGCAGAGGGTCCCGC 59.023 55.000 2.82 2.82 0.00 6.13
107 108 2.530701 AGATATAAGCAGAGGGTCCCG 58.469 52.381 0.99 0.00 0.00 5.14
108 109 4.348168 TGAAAGATATAAGCAGAGGGTCCC 59.652 45.833 0.00 0.00 0.00 4.46
109 110 5.552870 TGAAAGATATAAGCAGAGGGTCC 57.447 43.478 0.00 0.00 0.00 4.46
110 111 6.823689 TGTTTGAAAGATATAAGCAGAGGGTC 59.176 38.462 0.00 0.00 0.00 4.46
111 112 6.599638 GTGTTTGAAAGATATAAGCAGAGGGT 59.400 38.462 0.00 0.00 0.00 4.34
112 113 6.825721 AGTGTTTGAAAGATATAAGCAGAGGG 59.174 38.462 0.00 0.00 0.00 4.30
113 114 7.856145 AGTGTTTGAAAGATATAAGCAGAGG 57.144 36.000 0.00 0.00 0.00 3.69
123 124 9.434275 TCCTCCTGATATAGTGTTTGAAAGATA 57.566 33.333 0.00 0.00 0.00 1.98
124 125 8.324191 TCCTCCTGATATAGTGTTTGAAAGAT 57.676 34.615 0.00 0.00 0.00 2.40
125 126 7.733773 TCCTCCTGATATAGTGTTTGAAAGA 57.266 36.000 0.00 0.00 0.00 2.52
126 127 8.970859 AATCCTCCTGATATAGTGTTTGAAAG 57.029 34.615 0.00 0.00 31.83 2.62
197 198 1.264288 GTGCCGGTCAAACTCTGAAAG 59.736 52.381 1.90 0.00 35.22 2.62
199 200 0.878523 CGTGCCGGTCAAACTCTGAA 60.879 55.000 1.90 0.00 35.22 3.02
200 201 1.300620 CGTGCCGGTCAAACTCTGA 60.301 57.895 1.90 0.00 0.00 3.27
201 202 2.317609 CCGTGCCGGTCAAACTCTG 61.318 63.158 1.90 0.00 42.73 3.35
323 340 2.403252 ATACCTAACCTGCACTGCAC 57.597 50.000 0.00 0.00 33.79 4.57
377 396 4.098654 AGAGGTGATACGATGAGTTTGGAG 59.901 45.833 0.00 0.00 0.00 3.86
390 409 6.516718 ACTTGTATGTATGCAGAGGTGATAC 58.483 40.000 0.00 0.00 0.00 2.24
416 435 1.086696 CTTGACGTTTCGCCATGGAT 58.913 50.000 18.40 0.00 0.00 3.41
515 535 4.623002 GGAGTATAGCCTTTTCTTCTCCG 58.377 47.826 0.00 0.00 32.48 4.63
548 573 2.867109 ACTGGATGCAACTTGCTACT 57.133 45.000 14.78 0.06 45.31 2.57
549 574 4.003648 AGTAACTGGATGCAACTTGCTAC 58.996 43.478 14.78 7.05 45.31 3.58
550 575 4.286297 AGTAACTGGATGCAACTTGCTA 57.714 40.909 14.78 2.27 45.31 3.49
551 576 3.146104 AGTAACTGGATGCAACTTGCT 57.854 42.857 14.78 0.76 45.31 3.91
552 577 4.878397 AGATAGTAACTGGATGCAACTTGC 59.122 41.667 6.82 6.82 45.29 4.01
553 578 5.220739 GCAGATAGTAACTGGATGCAACTTG 60.221 44.000 9.25 0.00 36.09 3.16
555 580 4.080919 TGCAGATAGTAACTGGATGCAACT 60.081 41.667 9.25 0.00 39.08 3.16
556 581 4.191544 TGCAGATAGTAACTGGATGCAAC 58.808 43.478 9.25 0.00 39.08 4.17
584 621 4.973051 GCTCGTACATCAGTAATCACTCTG 59.027 45.833 0.00 0.00 30.46 3.35
605 642 4.092116 AGCTGGTGAAGAAAAAGTAGCT 57.908 40.909 0.00 0.00 35.61 3.32
624 661 2.749280 AGTGCAAATTGCCCTTTAGC 57.251 45.000 15.98 0.00 44.23 3.09
649 686 4.040376 GTGATAAGTGGGATCGTACGAAC 58.960 47.826 23.56 19.70 0.00 3.95
650 687 3.949754 AGTGATAAGTGGGATCGTACGAA 59.050 43.478 23.56 2.04 0.00 3.85
651 688 3.548770 AGTGATAAGTGGGATCGTACGA 58.451 45.455 21.93 21.93 0.00 3.43
652 689 3.984508 AGTGATAAGTGGGATCGTACG 57.015 47.619 9.53 9.53 0.00 3.67
657 694 6.412362 ACTGATGTAGTGATAAGTGGGATC 57.588 41.667 0.00 0.00 38.49 3.36
665 702 6.908870 ACGTACGTACTGATGTAGTGATAA 57.091 37.500 21.41 0.00 40.65 1.75
699 736 4.974591 ACCTTGAAGACACGTACGTATAC 58.025 43.478 22.34 14.63 0.00 1.47
700 737 4.094887 GGACCTTGAAGACACGTACGTATA 59.905 45.833 22.34 1.06 0.00 1.47
701 738 3.119708 GGACCTTGAAGACACGTACGTAT 60.120 47.826 22.34 10.64 0.00 3.06
716 753 1.841663 CGGAAACTGCACGGACCTTG 61.842 60.000 0.00 0.00 0.00 3.61
823 862 2.559668 CTCTGGTTGAAACATGCATGGT 59.440 45.455 29.41 22.35 0.00 3.55
824 863 2.821378 TCTCTGGTTGAAACATGCATGG 59.179 45.455 29.41 12.50 0.00 3.66
958 1002 0.671796 GGCCGGGTGTTTAATATGCC 59.328 55.000 2.18 0.00 0.00 4.40
984 1030 1.262640 TGGTAGAACGCTCCCCCTTC 61.263 60.000 0.00 0.00 0.00 3.46
1012 1068 2.183300 GCCATGGTCGACGTGCTA 59.817 61.111 14.67 0.00 34.66 3.49
1085 1141 1.964608 CTTGAGAGCCATGGCCTCGA 61.965 60.000 32.31 30.66 43.17 4.04
1086 1142 1.523258 CTTGAGAGCCATGGCCTCG 60.523 63.158 32.31 22.67 43.17 4.63
1134 1190 2.666526 GCGGCGAGGATGGGAATC 60.667 66.667 12.98 0.00 0.00 2.52
1135 1191 3.164269 AGCGGCGAGGATGGGAAT 61.164 61.111 12.98 0.00 0.00 3.01
1167 1223 0.178767 CCTGTCATTCGCCATGGAGA 59.821 55.000 18.40 16.54 33.07 3.71
1168 1224 1.442526 GCCTGTCATTCGCCATGGAG 61.443 60.000 18.40 13.80 33.07 3.86
1169 1225 1.451927 GCCTGTCATTCGCCATGGA 60.452 57.895 18.40 0.00 33.07 3.41
1550 1624 2.214216 CCGCCCCGAGATATTCCCA 61.214 63.158 0.00 0.00 0.00 4.37
1636 1710 1.048601 TCTTCTTCTCCAACGCCACT 58.951 50.000 0.00 0.00 0.00 4.00
1721 1810 3.243401 GGAAGTACCTTGCAACAAAGTGG 60.243 47.826 0.00 0.00 32.10 4.00
1742 1831 2.383527 GCCGCACTCTGAACGAAGG 61.384 63.158 0.00 0.00 0.00 3.46
1743 1832 2.720758 CGCCGCACTCTGAACGAAG 61.721 63.158 0.00 0.00 0.00 3.79
1745 1834 2.486636 ATTCGCCGCACTCTGAACGA 62.487 55.000 0.00 0.00 0.00 3.85
1746 1835 2.014093 GATTCGCCGCACTCTGAACG 62.014 60.000 0.00 0.00 0.00 3.95
1747 1836 0.737715 AGATTCGCCGCACTCTGAAC 60.738 55.000 0.00 0.00 0.00 3.18
1748 1837 0.737367 CAGATTCGCCGCACTCTGAA 60.737 55.000 7.68 0.00 37.85 3.02
1749 1838 1.153765 CAGATTCGCCGCACTCTGA 60.154 57.895 7.68 0.00 37.85 3.27
1750 1839 2.806856 GCAGATTCGCCGCACTCTG 61.807 63.158 8.69 8.69 38.49 3.35
1751 1840 2.510238 GCAGATTCGCCGCACTCT 60.510 61.111 0.00 0.00 0.00 3.24
1752 1841 2.815211 TGCAGATTCGCCGCACTC 60.815 61.111 0.00 0.00 0.00 3.51
1757 1846 3.197790 CTGGGTGCAGATTCGCCG 61.198 66.667 0.00 0.00 37.50 6.46
1758 1847 2.825836 CCTGGGTGCAGATTCGCC 60.826 66.667 0.00 0.00 35.93 5.54
1759 1848 3.512516 GCCTGGGTGCAGATTCGC 61.513 66.667 0.00 0.00 0.00 4.70
1760 1849 1.817099 GAGCCTGGGTGCAGATTCG 60.817 63.158 1.59 0.00 0.00 3.34
1761 1850 0.747283 CTGAGCCTGGGTGCAGATTC 60.747 60.000 1.59 0.00 0.00 2.52
1762 1851 1.302285 CTGAGCCTGGGTGCAGATT 59.698 57.895 1.59 0.00 0.00 2.40
1763 1852 2.996395 CTGAGCCTGGGTGCAGAT 59.004 61.111 1.59 0.00 0.00 2.90
1764 1853 4.025858 GCTGAGCCTGGGTGCAGA 62.026 66.667 21.45 0.00 0.00 4.26
1765 1854 4.031129 AGCTGAGCCTGGGTGCAG 62.031 66.667 1.59 11.55 0.00 4.41
1766 1855 4.340246 CAGCTGAGCCTGGGTGCA 62.340 66.667 8.42 0.35 0.00 4.57
1768 1857 4.340246 TGCAGCTGAGCCTGGGTG 62.340 66.667 20.43 0.00 33.44 4.61
1769 1858 4.341783 GTGCAGCTGAGCCTGGGT 62.342 66.667 20.43 0.00 33.44 4.51
1772 1861 4.340246 TGGGTGCAGCTGAGCCTG 62.340 66.667 20.43 0.00 35.93 4.85
1773 1862 4.341783 GTGGGTGCAGCTGAGCCT 62.342 66.667 20.43 0.00 31.85 4.58
1776 1865 4.694233 AGCGTGGGTGCAGCTGAG 62.694 66.667 20.43 8.15 40.07 3.35
1778 1867 4.994471 TGAGCGTGGGTGCAGCTG 62.994 66.667 16.65 10.11 41.84 4.24
1779 1868 4.996434 GTGAGCGTGGGTGCAGCT 62.996 66.667 16.65 6.47 44.80 4.24
1783 1872 1.444119 TTTTCTGTGAGCGTGGGTGC 61.444 55.000 0.00 0.00 0.00 5.01
1784 1873 1.021202 TTTTTCTGTGAGCGTGGGTG 58.979 50.000 0.00 0.00 0.00 4.61
1785 1874 3.487576 TTTTTCTGTGAGCGTGGGT 57.512 47.368 0.00 0.00 0.00 4.51
1842 1936 9.950680 CGCATCTAATTATCTACCACAAAATTT 57.049 29.630 0.00 0.00 0.00 1.82
1843 1937 9.120538 ACGCATCTAATTATCTACCACAAAATT 57.879 29.630 0.00 0.00 0.00 1.82
1844 1938 8.559536 CACGCATCTAATTATCTACCACAAAAT 58.440 33.333 0.00 0.00 0.00 1.82
1845 1939 7.766738 TCACGCATCTAATTATCTACCACAAAA 59.233 33.333 0.00 0.00 0.00 2.44
1846 1940 7.269316 TCACGCATCTAATTATCTACCACAAA 58.731 34.615 0.00 0.00 0.00 2.83
1847 1941 6.811954 TCACGCATCTAATTATCTACCACAA 58.188 36.000 0.00 0.00 0.00 3.33
1848 1942 6.399639 TCACGCATCTAATTATCTACCACA 57.600 37.500 0.00 0.00 0.00 4.17
1849 1943 5.346281 GCTCACGCATCTAATTATCTACCAC 59.654 44.000 0.00 0.00 35.78 4.16
1850 1944 5.243954 AGCTCACGCATCTAATTATCTACCA 59.756 40.000 0.00 0.00 39.10 3.25
1851 1945 5.715070 AGCTCACGCATCTAATTATCTACC 58.285 41.667 0.00 0.00 39.10 3.18
1852 1946 6.032985 CGAAGCTCACGCATCTAATTATCTAC 59.967 42.308 0.00 0.00 39.10 2.59
1853 1947 6.086871 CGAAGCTCACGCATCTAATTATCTA 58.913 40.000 0.00 0.00 39.10 1.98
1854 1948 4.920340 CGAAGCTCACGCATCTAATTATCT 59.080 41.667 0.00 0.00 39.10 1.98
1855 1949 5.183817 CGAAGCTCACGCATCTAATTATC 57.816 43.478 0.00 0.00 39.10 1.75
1873 1967 4.527564 ACGAGTTGAATTTTTCAGCGAAG 58.472 39.130 12.69 5.95 44.40 3.79
1874 1968 4.545823 ACGAGTTGAATTTTTCAGCGAA 57.454 36.364 12.69 0.00 44.40 4.70
1875 1969 4.545823 AACGAGTTGAATTTTTCAGCGA 57.454 36.364 12.69 0.00 44.40 4.93
1876 1970 4.085619 CCAAACGAGTTGAATTTTTCAGCG 60.086 41.667 5.36 0.00 44.40 5.18
1877 1971 5.040635 TCCAAACGAGTTGAATTTTTCAGC 58.959 37.500 5.36 0.00 41.38 4.26
1878 1972 6.033341 TGTCCAAACGAGTTGAATTTTTCAG 58.967 36.000 5.36 0.00 41.38 3.02
1879 1973 5.955488 TGTCCAAACGAGTTGAATTTTTCA 58.045 33.333 5.36 0.00 39.87 2.69
1880 1974 7.463469 AATGTCCAAACGAGTTGAATTTTTC 57.537 32.000 5.36 0.00 39.87 2.29
1881 1975 7.547370 TCAAATGTCCAAACGAGTTGAATTTTT 59.453 29.630 5.36 0.00 39.87 1.94
1882 1976 7.038659 TCAAATGTCCAAACGAGTTGAATTTT 58.961 30.769 5.36 0.00 39.87 1.82
1883 1977 6.568869 TCAAATGTCCAAACGAGTTGAATTT 58.431 32.000 5.36 5.93 39.87 1.82
1884 1978 6.142818 TCAAATGTCCAAACGAGTTGAATT 57.857 33.333 5.36 0.00 39.87 2.17
1885 1979 5.762045 CTCAAATGTCCAAACGAGTTGAAT 58.238 37.500 5.36 0.00 39.87 2.57
1886 1980 4.497340 GCTCAAATGTCCAAACGAGTTGAA 60.497 41.667 5.36 0.00 39.87 2.69
1887 1981 3.003275 GCTCAAATGTCCAAACGAGTTGA 59.997 43.478 5.36 0.00 39.87 3.18
1888 1982 3.243035 TGCTCAAATGTCCAAACGAGTTG 60.243 43.478 0.00 0.00 36.94 3.16
1889 1983 2.948979 TGCTCAAATGTCCAAACGAGTT 59.051 40.909 0.00 0.00 0.00 3.01
1890 1984 2.571212 TGCTCAAATGTCCAAACGAGT 58.429 42.857 0.00 0.00 0.00 4.18
1891 1985 3.003689 ACTTGCTCAAATGTCCAAACGAG 59.996 43.478 0.00 0.00 0.00 4.18
1892 1986 2.948979 ACTTGCTCAAATGTCCAAACGA 59.051 40.909 0.00 0.00 0.00 3.85
1893 1987 3.003689 AGACTTGCTCAAATGTCCAAACG 59.996 43.478 0.00 0.00 0.00 3.60
1894 1988 4.202050 ACAGACTTGCTCAAATGTCCAAAC 60.202 41.667 0.00 0.00 0.00 2.93
1895 1989 3.953612 ACAGACTTGCTCAAATGTCCAAA 59.046 39.130 0.00 0.00 0.00 3.28
1896 1990 3.316029 CACAGACTTGCTCAAATGTCCAA 59.684 43.478 0.00 0.00 0.00 3.53
1897 1991 2.880268 CACAGACTTGCTCAAATGTCCA 59.120 45.455 0.00 0.00 0.00 4.02
1898 1992 2.351157 GCACAGACTTGCTCAAATGTCC 60.351 50.000 0.00 0.00 39.59 4.02
1899 1993 2.291465 TGCACAGACTTGCTCAAATGTC 59.709 45.455 9.86 0.00 43.41 3.06
1900 1994 2.300433 TGCACAGACTTGCTCAAATGT 58.700 42.857 9.86 0.00 43.41 2.71
1901 1995 3.358707 TTGCACAGACTTGCTCAAATG 57.641 42.857 9.86 0.00 43.41 2.32
1902 1996 4.389890 TTTTGCACAGACTTGCTCAAAT 57.610 36.364 9.86 0.00 43.41 2.32
1903 1997 3.865011 TTTTGCACAGACTTGCTCAAA 57.135 38.095 9.86 7.06 43.41 2.69
1904 1998 3.865011 TTTTTGCACAGACTTGCTCAA 57.135 38.095 9.86 2.78 43.41 3.02
1921 2015 3.958147 ACAGACCCCGATTTTGTCTTTTT 59.042 39.130 0.00 0.00 37.25 1.94
1922 2016 3.562182 ACAGACCCCGATTTTGTCTTTT 58.438 40.909 0.00 0.00 37.25 2.27
1923 2017 3.223674 ACAGACCCCGATTTTGTCTTT 57.776 42.857 0.00 0.00 37.25 2.52
1924 2018 2.951229 ACAGACCCCGATTTTGTCTT 57.049 45.000 0.00 0.00 37.25 3.01
1925 2019 4.360951 TTTACAGACCCCGATTTTGTCT 57.639 40.909 0.00 0.00 39.86 3.41
1926 2020 5.441709 TTTTTACAGACCCCGATTTTGTC 57.558 39.130 0.00 0.00 0.00 3.18
1949 2043 9.783256 GTCAAAACAGTTCATAAACAGTAAACT 57.217 29.630 0.00 0.00 34.39 2.66
1950 2044 9.016623 GGTCAAAACAGTTCATAAACAGTAAAC 57.983 33.333 0.00 0.00 34.39 2.01
1951 2045 8.192110 GGGTCAAAACAGTTCATAAACAGTAAA 58.808 33.333 0.00 0.00 34.39 2.01
1952 2046 7.467539 CGGGTCAAAACAGTTCATAAACAGTAA 60.468 37.037 0.00 0.00 34.39 2.24
1953 2047 6.017770 CGGGTCAAAACAGTTCATAAACAGTA 60.018 38.462 0.00 0.00 34.39 2.74
1954 2048 5.220970 CGGGTCAAAACAGTTCATAAACAGT 60.221 40.000 0.00 0.00 36.76 3.55
1955 2049 5.008217 TCGGGTCAAAACAGTTCATAAACAG 59.992 40.000 0.00 0.00 37.88 3.16
1956 2050 4.882427 TCGGGTCAAAACAGTTCATAAACA 59.118 37.500 0.00 0.00 37.88 2.83
1957 2051 5.427036 TCGGGTCAAAACAGTTCATAAAC 57.573 39.130 0.00 0.00 35.50 2.01
1958 2052 6.642707 AATCGGGTCAAAACAGTTCATAAA 57.357 33.333 0.00 0.00 0.00 1.40
1959 2053 6.039941 ACAAATCGGGTCAAAACAGTTCATAA 59.960 34.615 0.00 0.00 0.00 1.90
1960 2054 5.533154 ACAAATCGGGTCAAAACAGTTCATA 59.467 36.000 0.00 0.00 0.00 2.15
1961 2055 4.340950 ACAAATCGGGTCAAAACAGTTCAT 59.659 37.500 0.00 0.00 0.00 2.57
1962 2056 3.697045 ACAAATCGGGTCAAAACAGTTCA 59.303 39.130 0.00 0.00 0.00 3.18
1963 2057 4.036380 AGACAAATCGGGTCAAAACAGTTC 59.964 41.667 0.00 0.00 37.74 3.01
1964 2058 3.951680 AGACAAATCGGGTCAAAACAGTT 59.048 39.130 0.00 0.00 37.74 3.16
1965 2059 3.551846 AGACAAATCGGGTCAAAACAGT 58.448 40.909 0.00 0.00 37.74 3.55
1966 2060 4.568152 AAGACAAATCGGGTCAAAACAG 57.432 40.909 0.00 0.00 37.74 3.16
1967 2061 4.993029 AAAGACAAATCGGGTCAAAACA 57.007 36.364 0.00 0.00 37.74 2.83
1987 2081 3.478857 TTGAGTAGGTCTCGGCAAAAA 57.521 42.857 0.00 0.00 45.46 1.94
1988 2082 3.478857 TTTGAGTAGGTCTCGGCAAAA 57.521 42.857 0.00 0.00 45.46 2.44
1989 2083 3.695830 ATTTGAGTAGGTCTCGGCAAA 57.304 42.857 0.00 0.00 45.46 3.68
1990 2084 4.202223 GGATATTTGAGTAGGTCTCGGCAA 60.202 45.833 0.00 0.00 45.46 4.52
1991 2085 3.321111 GGATATTTGAGTAGGTCTCGGCA 59.679 47.826 0.00 0.00 45.46 5.69
1992 2086 3.321111 TGGATATTTGAGTAGGTCTCGGC 59.679 47.826 0.00 0.00 45.46 5.54
1993 2087 5.531122 TTGGATATTTGAGTAGGTCTCGG 57.469 43.478 0.00 0.00 45.46 4.63
1994 2088 7.210174 TCATTTGGATATTTGAGTAGGTCTCG 58.790 38.462 0.00 0.00 45.46 4.04
1995 2089 8.207545 ACTCATTTGGATATTTGAGTAGGTCTC 58.792 37.037 2.77 0.00 45.14 3.36
1996 2090 8.095452 ACTCATTTGGATATTTGAGTAGGTCT 57.905 34.615 2.77 0.00 45.14 3.85
1997 2091 8.616076 CAACTCATTTGGATATTTGAGTAGGTC 58.384 37.037 4.98 0.00 45.98 3.85
1998 2092 8.328758 TCAACTCATTTGGATATTTGAGTAGGT 58.671 33.333 4.98 0.00 45.98 3.08
1999 2093 8.737168 TCAACTCATTTGGATATTTGAGTAGG 57.263 34.615 4.98 2.12 45.98 3.18
2013 2107 4.084433 CCGCACCAAATTTCAACTCATTTG 60.084 41.667 0.00 0.00 39.25 2.32
2014 2108 4.057432 CCGCACCAAATTTCAACTCATTT 58.943 39.130 0.00 0.00 0.00 2.32
2015 2109 3.320541 TCCGCACCAAATTTCAACTCATT 59.679 39.130 0.00 0.00 0.00 2.57
2016 2110 2.890311 TCCGCACCAAATTTCAACTCAT 59.110 40.909 0.00 0.00 0.00 2.90
2017 2111 2.034053 GTCCGCACCAAATTTCAACTCA 59.966 45.455 0.00 0.00 0.00 3.41
2018 2112 2.607038 GGTCCGCACCAAATTTCAACTC 60.607 50.000 0.00 0.00 43.17 3.01
2019 2113 1.339929 GGTCCGCACCAAATTTCAACT 59.660 47.619 0.00 0.00 43.17 3.16
2020 2114 1.339929 AGGTCCGCACCAAATTTCAAC 59.660 47.619 0.00 0.00 46.68 3.18
2021 2115 1.611491 GAGGTCCGCACCAAATTTCAA 59.389 47.619 0.00 0.00 46.68 2.69
2022 2116 1.243902 GAGGTCCGCACCAAATTTCA 58.756 50.000 0.00 0.00 46.68 2.69
2023 2117 1.068541 GTGAGGTCCGCACCAAATTTC 60.069 52.381 14.42 0.00 46.68 2.17
2024 2118 0.958822 GTGAGGTCCGCACCAAATTT 59.041 50.000 14.42 0.00 46.68 1.82
2025 2119 1.234615 CGTGAGGTCCGCACCAAATT 61.235 55.000 18.84 0.00 46.68 1.82
2026 2120 1.671054 CGTGAGGTCCGCACCAAAT 60.671 57.895 18.84 0.00 46.68 2.32
2027 2121 2.280524 CGTGAGGTCCGCACCAAA 60.281 61.111 18.84 0.00 46.68 3.28
2034 2128 1.086696 AATTTGATGCGTGAGGTCCG 58.913 50.000 0.00 0.00 0.00 4.79
2035 2129 4.130118 AGATAATTTGATGCGTGAGGTCC 58.870 43.478 0.00 0.00 0.00 4.46
2036 2130 5.177696 GGTAGATAATTTGATGCGTGAGGTC 59.822 44.000 0.00 0.00 0.00 3.85
2037 2131 5.057149 GGTAGATAATTTGATGCGTGAGGT 58.943 41.667 0.00 0.00 0.00 3.85
2038 2132 5.050091 GTGGTAGATAATTTGATGCGTGAGG 60.050 44.000 0.00 0.00 0.00 3.86
2039 2133 5.523552 TGTGGTAGATAATTTGATGCGTGAG 59.476 40.000 0.00 0.00 0.00 3.51
2040 2134 5.293324 GTGTGGTAGATAATTTGATGCGTGA 59.707 40.000 0.00 0.00 0.00 4.35
2041 2135 5.064579 TGTGTGGTAGATAATTTGATGCGTG 59.935 40.000 0.00 0.00 0.00 5.34
2042 2136 5.182487 TGTGTGGTAGATAATTTGATGCGT 58.818 37.500 0.00 0.00 0.00 5.24
2043 2137 5.733226 TGTGTGGTAGATAATTTGATGCG 57.267 39.130 0.00 0.00 0.00 4.73
2044 2138 8.755696 TTTTTGTGTGGTAGATAATTTGATGC 57.244 30.769 0.00 0.00 0.00 3.91
2110 2204 1.880646 GCTGCTCCCGGTCAGTAAAAA 60.881 52.381 14.47 0.00 33.09 1.94
2111 2205 0.321298 GCTGCTCCCGGTCAGTAAAA 60.321 55.000 14.47 0.00 33.09 1.52
2112 2206 1.192146 AGCTGCTCCCGGTCAGTAAA 61.192 55.000 14.47 0.00 33.09 2.01
2113 2207 1.609501 AGCTGCTCCCGGTCAGTAA 60.610 57.895 14.47 0.00 33.09 2.24
2114 2208 2.037367 AGCTGCTCCCGGTCAGTA 59.963 61.111 14.47 3.48 33.09 2.74
2115 2209 3.699894 CAGCTGCTCCCGGTCAGT 61.700 66.667 0.00 2.70 33.09 3.41
2116 2210 3.368190 CTCAGCTGCTCCCGGTCAG 62.368 68.421 9.47 5.96 0.00 3.51
2117 2211 3.385384 CTCAGCTGCTCCCGGTCA 61.385 66.667 9.47 0.00 0.00 4.02
2118 2212 4.828925 GCTCAGCTGCTCCCGGTC 62.829 72.222 9.47 0.00 0.00 4.79
2136 2230 0.764890 TAATTCATCCTGGAGCCCGG 59.235 55.000 1.52 0.00 0.00 5.73
2137 2231 2.704572 GATAATTCATCCTGGAGCCCG 58.295 52.381 1.52 0.00 0.00 6.13
2138 2232 2.704572 CGATAATTCATCCTGGAGCCC 58.295 52.381 1.52 0.00 0.00 5.19
2139 2233 2.079925 GCGATAATTCATCCTGGAGCC 58.920 52.381 1.52 0.00 0.00 4.70
2140 2234 3.051081 AGCGATAATTCATCCTGGAGC 57.949 47.619 1.52 0.00 0.00 4.70
2141 2235 3.677121 CGAAGCGATAATTCATCCTGGAG 59.323 47.826 1.52 0.00 0.00 3.86
2142 2236 3.069586 ACGAAGCGATAATTCATCCTGGA 59.930 43.478 0.00 0.00 0.00 3.86
2143 2237 3.393800 ACGAAGCGATAATTCATCCTGG 58.606 45.455 0.00 0.00 0.00 4.45
2144 2238 4.507756 TGAACGAAGCGATAATTCATCCTG 59.492 41.667 0.00 0.00 0.00 3.86
2145 2239 4.508124 GTGAACGAAGCGATAATTCATCCT 59.492 41.667 0.00 0.00 32.30 3.24
2146 2240 4.508124 AGTGAACGAAGCGATAATTCATCC 59.492 41.667 0.00 0.00 32.30 3.51
2147 2241 5.643339 AGTGAACGAAGCGATAATTCATC 57.357 39.130 0.00 0.00 32.30 2.92
2148 2242 7.715265 AATAGTGAACGAAGCGATAATTCAT 57.285 32.000 0.00 0.00 32.30 2.57
2149 2243 8.812147 ATAATAGTGAACGAAGCGATAATTCA 57.188 30.769 0.00 0.00 0.00 2.57
2153 2247 9.687210 ACATTATAATAGTGAACGAAGCGATAA 57.313 29.630 0.00 0.00 0.00 1.75
2154 2248 9.687210 AACATTATAATAGTGAACGAAGCGATA 57.313 29.630 0.00 0.00 0.00 2.92
2155 2249 8.589335 AACATTATAATAGTGAACGAAGCGAT 57.411 30.769 0.00 0.00 0.00 4.58
2158 2252 9.982291 TTGAAACATTATAATAGTGAACGAAGC 57.018 29.630 0.00 0.00 0.00 3.86
2223 2321 8.638685 ACAGACTGAAATGATTGAACAAAAAG 57.361 30.769 10.08 0.00 0.00 2.27
2304 2405 4.585955 ATAATGGTACAGTAGTGCTCCG 57.414 45.455 0.00 0.00 43.88 4.63
2327 2428 8.324163 ACATCGAGACTTAGCAAAACTTAAAT 57.676 30.769 0.00 0.00 0.00 1.40
2328 2429 7.656137 AGACATCGAGACTTAGCAAAACTTAAA 59.344 33.333 0.00 0.00 0.00 1.52
2329 2430 7.152645 AGACATCGAGACTTAGCAAAACTTAA 58.847 34.615 0.00 0.00 0.00 1.85
2330 2431 6.688578 AGACATCGAGACTTAGCAAAACTTA 58.311 36.000 0.00 0.00 0.00 2.24
2331 2432 5.542779 AGACATCGAGACTTAGCAAAACTT 58.457 37.500 0.00 0.00 0.00 2.66
2332 2433 5.140747 AGACATCGAGACTTAGCAAAACT 57.859 39.130 0.00 0.00 0.00 2.66
2333 2434 4.923871 TGAGACATCGAGACTTAGCAAAAC 59.076 41.667 0.00 0.00 0.00 2.43
2334 2435 5.134202 TGAGACATCGAGACTTAGCAAAA 57.866 39.130 0.00 0.00 0.00 2.44
2335 2436 4.218635 ACTGAGACATCGAGACTTAGCAAA 59.781 41.667 0.00 0.00 30.75 3.68
2336 2437 3.759086 ACTGAGACATCGAGACTTAGCAA 59.241 43.478 0.00 0.00 30.75 3.91
2337 2438 3.348119 ACTGAGACATCGAGACTTAGCA 58.652 45.455 0.00 0.00 30.75 3.49
2338 2439 3.375610 TGACTGAGACATCGAGACTTAGC 59.624 47.826 0.00 0.00 30.75 3.09
2339 2440 5.553290 TTGACTGAGACATCGAGACTTAG 57.447 43.478 0.00 0.00 33.17 2.18
2340 2441 5.416013 ACATTGACTGAGACATCGAGACTTA 59.584 40.000 0.00 0.00 0.00 2.24
2341 2442 4.219507 ACATTGACTGAGACATCGAGACTT 59.780 41.667 0.00 0.00 0.00 3.01
2342 2443 3.761218 ACATTGACTGAGACATCGAGACT 59.239 43.478 0.00 0.00 0.00 3.24
2343 2444 4.103365 ACATTGACTGAGACATCGAGAC 57.897 45.455 0.00 0.00 0.00 3.36
2344 2445 4.790765 AACATTGACTGAGACATCGAGA 57.209 40.909 0.00 0.00 0.00 4.04
2345 2446 5.397828 CGATAACATTGACTGAGACATCGAG 59.602 44.000 0.00 0.00 0.00 4.04
2346 2447 5.163652 ACGATAACATTGACTGAGACATCGA 60.164 40.000 9.50 0.00 0.00 3.59
2347 2448 5.037385 ACGATAACATTGACTGAGACATCG 58.963 41.667 0.00 0.00 0.00 3.84
2348 2449 5.460419 GGACGATAACATTGACTGAGACATC 59.540 44.000 0.00 0.00 0.00 3.06
2349 2450 5.127845 AGGACGATAACATTGACTGAGACAT 59.872 40.000 0.00 0.00 0.00 3.06
2350 2451 4.462834 AGGACGATAACATTGACTGAGACA 59.537 41.667 0.00 0.00 0.00 3.41
2351 2452 5.000012 AGGACGATAACATTGACTGAGAC 58.000 43.478 0.00 0.00 0.00 3.36
2352 2453 5.661056 AAGGACGATAACATTGACTGAGA 57.339 39.130 0.00 0.00 0.00 3.27
2353 2454 5.869344 TCAAAGGACGATAACATTGACTGAG 59.131 40.000 0.00 0.00 0.00 3.35
2354 2455 5.789521 TCAAAGGACGATAACATTGACTGA 58.210 37.500 0.00 0.00 0.00 3.41
2355 2456 6.668541 ATCAAAGGACGATAACATTGACTG 57.331 37.500 0.00 0.00 30.46 3.51
2356 2457 7.687941 AAATCAAAGGACGATAACATTGACT 57.312 32.000 0.00 0.00 30.46 3.41
2357 2458 7.201350 GCAAAATCAAAGGACGATAACATTGAC 60.201 37.037 0.00 0.00 30.46 3.18
2358 2459 6.806249 GCAAAATCAAAGGACGATAACATTGA 59.194 34.615 0.00 0.00 0.00 2.57
2359 2460 6.585702 TGCAAAATCAAAGGACGATAACATTG 59.414 34.615 0.00 0.00 0.00 2.82
2360 2461 6.686630 TGCAAAATCAAAGGACGATAACATT 58.313 32.000 0.00 0.00 0.00 2.71
2361 2462 6.266168 TGCAAAATCAAAGGACGATAACAT 57.734 33.333 0.00 0.00 0.00 2.71
2362 2463 5.697473 TGCAAAATCAAAGGACGATAACA 57.303 34.783 0.00 0.00 0.00 2.41
2363 2464 5.516339 CCATGCAAAATCAAAGGACGATAAC 59.484 40.000 0.00 0.00 0.00 1.89
2364 2465 5.417266 TCCATGCAAAATCAAAGGACGATAA 59.583 36.000 0.00 0.00 0.00 1.75
2365 2466 4.946772 TCCATGCAAAATCAAAGGACGATA 59.053 37.500 0.00 0.00 0.00 2.92
2366 2467 3.763360 TCCATGCAAAATCAAAGGACGAT 59.237 39.130 0.00 0.00 0.00 3.73
2367 2468 3.153130 TCCATGCAAAATCAAAGGACGA 58.847 40.909 0.00 0.00 0.00 4.20
2368 2469 3.191162 TCTCCATGCAAAATCAAAGGACG 59.809 43.478 0.00 0.00 0.00 4.79
2369 2470 4.789012 TCTCCATGCAAAATCAAAGGAC 57.211 40.909 0.00 0.00 0.00 3.85
2370 2471 5.393352 CGAATCTCCATGCAAAATCAAAGGA 60.393 40.000 0.00 0.00 0.00 3.36
2371 2472 4.802039 CGAATCTCCATGCAAAATCAAAGG 59.198 41.667 0.00 0.00 0.00 3.11
2372 2473 5.404946 ACGAATCTCCATGCAAAATCAAAG 58.595 37.500 0.00 0.00 0.00 2.77
2373 2474 5.389859 ACGAATCTCCATGCAAAATCAAA 57.610 34.783 0.00 0.00 0.00 2.69
2374 2475 5.414144 TGTACGAATCTCCATGCAAAATCAA 59.586 36.000 0.00 0.00 0.00 2.57
2375 2476 4.940654 TGTACGAATCTCCATGCAAAATCA 59.059 37.500 0.00 0.00 0.00 2.57
2376 2477 5.484173 TGTACGAATCTCCATGCAAAATC 57.516 39.130 0.00 0.00 0.00 2.17
2377 2478 5.895636 TTGTACGAATCTCCATGCAAAAT 57.104 34.783 0.00 0.00 0.00 1.82
2378 2479 5.895636 ATTGTACGAATCTCCATGCAAAA 57.104 34.783 0.00 0.00 0.00 2.44
2379 2480 5.895636 AATTGTACGAATCTCCATGCAAA 57.104 34.783 0.00 0.00 0.00 3.68
2380 2481 5.895636 AAATTGTACGAATCTCCATGCAA 57.104 34.783 0.00 0.00 0.00 4.08
2381 2482 5.895636 AAAATTGTACGAATCTCCATGCA 57.104 34.783 0.00 0.00 0.00 3.96
2440 2541 9.841295 ACTTAACCAAGTTTTAGTCAAGTGATA 57.159 29.630 0.00 0.00 42.51 2.15
2441 2542 8.747538 ACTTAACCAAGTTTTAGTCAAGTGAT 57.252 30.769 0.00 0.00 42.51 3.06
2442 2543 8.044908 AGACTTAACCAAGTTTTAGTCAAGTGA 58.955 33.333 17.36 0.00 45.18 3.41
2443 2544 8.209917 AGACTTAACCAAGTTTTAGTCAAGTG 57.790 34.615 17.36 0.00 45.18 3.16
2444 2545 9.895138 TTAGACTTAACCAAGTTTTAGTCAAGT 57.105 29.630 17.36 7.55 45.18 3.16
2463 2564 9.043548 TGGCTAGGTCTTAGTTTATTTAGACTT 57.956 33.333 0.00 0.00 37.68 3.01
2464 2565 8.476447 GTGGCTAGGTCTTAGTTTATTTAGACT 58.524 37.037 0.00 0.00 37.68 3.24
2465 2566 8.255905 TGTGGCTAGGTCTTAGTTTATTTAGAC 58.744 37.037 0.00 0.00 37.01 2.59
2466 2567 8.255905 GTGTGGCTAGGTCTTAGTTTATTTAGA 58.744 37.037 0.00 0.00 0.00 2.10
2467 2568 7.494952 GGTGTGGCTAGGTCTTAGTTTATTTAG 59.505 40.741 0.00 0.00 0.00 1.85
2468 2569 7.333323 GGTGTGGCTAGGTCTTAGTTTATTTA 58.667 38.462 0.00 0.00 0.00 1.40
2469 2570 6.178324 GGTGTGGCTAGGTCTTAGTTTATTT 58.822 40.000 0.00 0.00 0.00 1.40
2470 2571 5.338953 GGGTGTGGCTAGGTCTTAGTTTATT 60.339 44.000 0.00 0.00 0.00 1.40
2471 2572 4.163649 GGGTGTGGCTAGGTCTTAGTTTAT 59.836 45.833 0.00 0.00 0.00 1.40
2472 2573 3.516700 GGGTGTGGCTAGGTCTTAGTTTA 59.483 47.826 0.00 0.00 0.00 2.01
2473 2574 2.305052 GGGTGTGGCTAGGTCTTAGTTT 59.695 50.000 0.00 0.00 0.00 2.66
2474 2575 1.907255 GGGTGTGGCTAGGTCTTAGTT 59.093 52.381 0.00 0.00 0.00 2.24
2475 2576 1.203262 TGGGTGTGGCTAGGTCTTAGT 60.203 52.381 0.00 0.00 0.00 2.24
2476 2577 1.568504 TGGGTGTGGCTAGGTCTTAG 58.431 55.000 0.00 0.00 0.00 2.18
2477 2578 2.032965 TTGGGTGTGGCTAGGTCTTA 57.967 50.000 0.00 0.00 0.00 2.10
2478 2579 1.372501 ATTGGGTGTGGCTAGGTCTT 58.627 50.000 0.00 0.00 0.00 3.01
2479 2580 1.372501 AATTGGGTGTGGCTAGGTCT 58.627 50.000 0.00 0.00 0.00 3.85
2480 2581 2.215942 AAATTGGGTGTGGCTAGGTC 57.784 50.000 0.00 0.00 0.00 3.85
2481 2582 2.247358 CAAAATTGGGTGTGGCTAGGT 58.753 47.619 0.00 0.00 0.00 3.08
2482 2583 1.066929 GCAAAATTGGGTGTGGCTAGG 60.067 52.381 0.00 0.00 0.00 3.02
2483 2584 1.617850 TGCAAAATTGGGTGTGGCTAG 59.382 47.619 0.00 0.00 0.00 3.42
2484 2585 1.709578 TGCAAAATTGGGTGTGGCTA 58.290 45.000 0.00 0.00 0.00 3.93
2485 2586 1.058284 ATGCAAAATTGGGTGTGGCT 58.942 45.000 0.00 0.00 0.00 4.75
2486 2587 2.758736 TATGCAAAATTGGGTGTGGC 57.241 45.000 0.00 0.00 0.00 5.01
2487 2588 4.468765 TCATATGCAAAATTGGGTGTGG 57.531 40.909 0.00 0.00 0.00 4.17
2488 2589 6.798315 TTTTCATATGCAAAATTGGGTGTG 57.202 33.333 0.00 0.00 0.00 3.82
2489 2590 7.999450 AATTTTCATATGCAAAATTGGGTGT 57.001 28.000 23.24 9.95 40.39 4.16
2531 2632 6.110707 TCCGAATATCCCTTGTTTCTAACAC 58.889 40.000 0.00 0.00 41.97 3.32
2564 2845 8.246908 ACATAAAACAAATCATGCATGAACTG 57.753 30.769 31.79 29.15 40.69 3.16
2565 2846 8.836268 AACATAAAACAAATCATGCATGAACT 57.164 26.923 31.79 19.47 40.69 3.01
2566 2847 9.532697 GAAACATAAAACAAATCATGCATGAAC 57.467 29.630 31.79 0.00 40.69 3.18
2567 2848 9.491675 AGAAACATAAAACAAATCATGCATGAA 57.508 25.926 31.79 16.26 40.69 2.57
2568 2849 9.491675 AAGAAACATAAAACAAATCATGCATGA 57.508 25.926 30.47 30.47 41.70 3.07
2571 2852 8.659925 ACAAGAAACATAAAACAAATCATGCA 57.340 26.923 0.00 0.00 0.00 3.96
2572 2853 8.763356 TGACAAGAAACATAAAACAAATCATGC 58.237 29.630 0.00 0.00 0.00 4.06
2577 2858 9.959749 ACGTATGACAAGAAACATAAAACAAAT 57.040 25.926 0.00 0.00 32.07 2.32
2578 2859 9.227490 CACGTATGACAAGAAACATAAAACAAA 57.773 29.630 0.00 0.00 32.07 2.83
2579 2860 8.613482 TCACGTATGACAAGAAACATAAAACAA 58.387 29.630 0.00 0.00 32.07 2.83
2585 2966 8.989653 TGTATTCACGTATGACAAGAAACATA 57.010 30.769 0.00 0.00 33.38 2.29
2586 2967 7.899178 TGTATTCACGTATGACAAGAAACAT 57.101 32.000 0.00 0.00 33.38 2.71
2619 3000 8.308931 ACTCTGAATGTATTGATTGCACAAAAT 58.691 29.630 0.00 0.00 33.44 1.82
2620 3001 7.660112 ACTCTGAATGTATTGATTGCACAAAA 58.340 30.769 0.00 0.00 33.44 2.44
2621 3002 7.218228 ACTCTGAATGTATTGATTGCACAAA 57.782 32.000 0.00 0.00 33.44 2.83
2622 3003 6.822667 ACTCTGAATGTATTGATTGCACAA 57.177 33.333 0.00 0.00 0.00 3.33
2679 3060 0.812811 ATGCGTGCCACATGCTAGAG 60.813 55.000 12.56 0.00 45.53 2.43
2681 3062 1.091197 TCATGCGTGCCACATGCTAG 61.091 55.000 12.56 5.72 45.53 3.42
2693 3074 2.094182 ACGTCTTAAGACCATCATGCGT 60.094 45.455 26.12 16.53 41.86 5.24
2694 3075 2.540515 ACGTCTTAAGACCATCATGCG 58.459 47.619 26.12 15.95 41.86 4.73
2726 3109 6.899393 AGCTCAAAATGTAATGTTCTTCCA 57.101 33.333 0.00 0.00 0.00 3.53
2742 3125 8.518430 TCATATGCCTAATTTTGTAGCTCAAA 57.482 30.769 0.00 0.00 43.24 2.69
2745 3128 6.936900 TCCTCATATGCCTAATTTTGTAGCTC 59.063 38.462 0.00 0.00 0.00 4.09
2757 3149 6.010850 CACTTACTACCTCCTCATATGCCTA 58.989 44.000 0.00 0.00 0.00 3.93
2759 3151 4.561734 GCACTTACTACCTCCTCATATGCC 60.562 50.000 0.00 0.00 0.00 4.40
2765 3157 3.090037 GTGAGCACTTACTACCTCCTCA 58.910 50.000 0.00 0.00 0.00 3.86
2766 3158 2.097791 CGTGAGCACTTACTACCTCCTC 59.902 54.545 0.00 0.00 0.00 3.71
2772 3164 4.982999 TCTGAATCGTGAGCACTTACTAC 58.017 43.478 0.00 0.00 0.00 2.73
2773 3165 5.836821 ATCTGAATCGTGAGCACTTACTA 57.163 39.130 0.00 0.00 0.00 1.82
2774 3166 4.727507 ATCTGAATCGTGAGCACTTACT 57.272 40.909 0.00 0.00 0.00 2.24
2783 3175 9.816354 TTTACAGATGAAATATCTGAATCGTGA 57.184 29.630 20.26 0.00 46.25 4.35
2823 3223 2.159296 TGATTCCACGGTCATCACGTAG 60.159 50.000 0.00 0.00 43.58 3.51
2826 3226 1.939974 ATGATTCCACGGTCATCACG 58.060 50.000 3.70 0.00 29.36 4.35
2833 3233 7.016268 ACTCCTACATATAAATGATTCCACGGT 59.984 37.037 0.00 0.00 36.54 4.83
2887 3288 5.332808 CGGGAATTTAATTATCACGACCGAC 60.333 44.000 3.61 0.00 42.38 4.79
2890 3291 4.319984 GGCGGGAATTTAATTATCACGACC 60.320 45.833 12.27 9.20 42.12 4.79
2891 3293 4.779987 GGCGGGAATTTAATTATCACGAC 58.220 43.478 12.27 6.38 42.38 4.34
2917 3319 5.353956 TGTTAGTTCATGAATGATTCCACGG 59.646 40.000 12.12 0.00 36.56 4.94
2919 3321 8.299570 ACTTTGTTAGTTCATGAATGATTCCAC 58.700 33.333 12.12 0.00 36.56 4.02
2927 3329 8.950210 CATGGAGTACTTTGTTAGTTCATGAAT 58.050 33.333 12.12 3.70 38.33 2.57
2928 3330 7.390440 CCATGGAGTACTTTGTTAGTTCATGAA 59.610 37.037 5.56 3.38 38.33 2.57
2932 3334 6.428083 TCCATGGAGTACTTTGTTAGTTCA 57.572 37.500 11.44 0.00 38.33 3.18
2933 3335 5.351740 GCTCCATGGAGTACTTTGTTAGTTC 59.648 44.000 36.32 15.34 43.70 3.01
2934 3336 5.221843 TGCTCCATGGAGTACTTTGTTAGTT 60.222 40.000 36.32 0.00 43.70 2.24
3002 3521 3.003585 TGACAATGCAACTACTTGTGCAG 59.996 43.478 7.33 0.00 36.62 4.41
3020 3539 0.454600 GATTAGGCTCGTCCGTGACA 59.545 55.000 0.00 0.00 40.77 3.58
3048 3593 1.869132 CGCGGCTACTTTTGCATGC 60.869 57.895 11.82 11.82 0.00 4.06
3060 3605 2.436646 ATGCTACTTTGCGCGGCT 60.437 55.556 8.83 0.00 35.36 5.52
3115 3661 5.912528 ACGACGACACATGAGAAAATAAAC 58.087 37.500 0.00 0.00 0.00 2.01
3204 3752 1.927174 CTCCTGCTTGTGCGTACATAC 59.073 52.381 7.30 3.25 43.34 2.39
3461 4011 2.927856 TCTCCCTTGAGCCGCCAA 60.928 61.111 0.00 0.00 38.58 4.52
4052 4618 0.384309 CGGCGAGCATGAGGTACTTA 59.616 55.000 0.00 0.00 41.55 2.24
4136 4702 6.147164 TGAAATGCCTAACAAGAACGAACTAG 59.853 38.462 0.00 0.00 0.00 2.57
4142 4708 3.502211 ACCTGAAATGCCTAACAAGAACG 59.498 43.478 0.00 0.00 0.00 3.95
4161 4727 9.177608 GGTTAATACTAAAATAAACCGGAACCT 57.822 33.333 9.46 0.00 0.00 3.50
4167 4733 8.949177 ACACCAGGTTAATACTAAAATAAACCG 58.051 33.333 0.00 0.00 40.98 4.44
4190 4756 1.728425 CGCGGGAAACTAACCTAACAC 59.272 52.381 0.00 0.00 0.00 3.32
4250 4816 2.802256 CGAGAGTTCGCTGATCAATGA 58.198 47.619 0.00 0.00 40.36 2.57
4272 4838 2.161012 GTGTGACCAATGTGCTCATCTG 59.839 50.000 1.01 3.40 32.56 2.90
4398 4964 3.473113 AAACTGATAGTGGGCCCAATT 57.527 42.857 32.72 22.27 0.00 2.32
4399 4965 3.473113 AAAACTGATAGTGGGCCCAAT 57.527 42.857 30.31 30.31 0.00 3.16
4527 5096 4.081420 TGAAGTGAGAAGAATGCTAGGGTC 60.081 45.833 0.00 0.00 0.00 4.46
4670 5251 2.989253 TCAACTCTGGCTCGCCGA 60.989 61.111 3.14 3.23 39.42 5.54
4680 5261 0.605589 CGAACTCAGGCCTCAACTCT 59.394 55.000 0.00 0.00 0.00 3.24
4988 5569 2.044053 CCATCCCACGGTGCCAAT 60.044 61.111 1.68 0.00 0.00 3.16
5040 5621 1.478288 GGCAGCCCATCTAAGCTCAAT 60.478 52.381 0.00 0.00 37.18 2.57
5141 5722 5.049749 TCAACAACGATGAAACAACGATCAT 60.050 36.000 0.00 0.00 38.93 2.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.