Multiple sequence alignment - TraesCS3D01G333100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G333100 chr3D 100.000 3502 0 0 1 3502 445039452 445035951 0.000000e+00 6468.0
1 TraesCS3D01G333100 chr3D 89.671 213 20 2 1213 1425 33858885 33858675 1.600000e-68 270.0
2 TraesCS3D01G333100 chr3D 82.329 249 39 4 71 319 178589471 178589228 9.850000e-51 211.0
3 TraesCS3D01G333100 chr3D 86.567 67 7 2 2612 2676 118240123 118240189 4.850000e-09 73.1
4 TraesCS3D01G333100 chr3A 93.036 2082 92 28 1441 3502 586422840 586420792 0.000000e+00 2992.0
5 TraesCS3D01G333100 chr3A 86.717 1054 64 30 413 1423 586423919 586422899 0.000000e+00 1101.0
6 TraesCS3D01G333100 chr3A 83.333 246 36 4 77 317 668688431 668688676 4.550000e-54 222.0
7 TraesCS3D01G333100 chr3B 90.271 2323 88 49 413 2626 583393726 583391433 0.000000e+00 2911.0
8 TraesCS3D01G333100 chr3B 94.024 820 31 5 2687 3502 583391419 583390614 0.000000e+00 1227.0
9 TraesCS3D01G333100 chr3B 89.720 214 19 3 1755 1966 763576031 763576243 1.600000e-68 270.0
10 TraesCS3D01G333100 chr3B 89.372 207 21 1 1219 1425 22505987 22505782 3.470000e-65 259.0
11 TraesCS3D01G333100 chr3B 81.526 249 45 1 71 318 588755516 588755764 1.650000e-48 204.0
12 TraesCS3D01G333100 chr3B 85.526 76 1 3 2637 2702 637088565 637088490 1.740000e-08 71.3
13 TraesCS3D01G333100 chr6D 90.411 219 20 1 1755 1972 384196355 384196137 1.590000e-73 287.0
14 TraesCS3D01G333100 chr6D 90.141 213 20 1 1755 1966 322697880 322698092 3.440000e-70 276.0
15 TraesCS3D01G333100 chr6D 85.556 90 7 5 2584 2672 413075469 413075553 4.810000e-14 89.8
16 TraesCS3D01G333100 chr6D 86.207 58 8 0 2567 2624 199351421 199351478 2.920000e-06 63.9
17 TraesCS3D01G333100 chr2D 89.498 219 22 1 1755 1972 614385450 614385232 3.440000e-70 276.0
18 TraesCS3D01G333100 chr2D 86.667 180 23 1 71 250 81245619 81245441 7.670000e-47 198.0
19 TraesCS3D01G333100 chr2D 78.082 146 24 5 1268 1409 417543865 417544006 6.230000e-13 86.1
20 TraesCS3D01G333100 chr2B 88.889 225 22 3 1755 1977 50580979 50580756 1.240000e-69 274.0
21 TraesCS3D01G333100 chrUn 89.671 213 21 1 1755 1966 162682309 162682521 1.600000e-68 270.0
22 TraesCS3D01G333100 chrUn 90.000 210 19 2 1213 1422 240676920 240677127 1.600000e-68 270.0
23 TraesCS3D01G333100 chr7D 89.855 207 19 2 1219 1425 555231887 555231683 7.450000e-67 265.0
24 TraesCS3D01G333100 chr7D 87.640 178 21 1 71 247 634258801 634258978 4.580000e-49 206.0
25 TraesCS3D01G333100 chr7D 91.139 79 6 1 250 328 634412626 634412703 4.780000e-19 106.0
26 TraesCS3D01G333100 chr5D 83.737 289 38 8 1498 1783 519277430 519277712 7.450000e-67 265.0
27 TraesCS3D01G333100 chr5D 89.873 158 16 0 1245 1402 519277258 519277415 1.650000e-48 204.0
28 TraesCS3D01G333100 chr5D 81.702 235 36 6 1502 1734 238066458 238066687 4.610000e-44 189.0
29 TraesCS3D01G333100 chr4B 88.532 218 24 1 1756 1972 608366989 608366772 2.680000e-66 263.0
30 TraesCS3D01G333100 chr4B 84.874 238 24 6 1515 1752 103056202 103055977 2.720000e-56 230.0
31 TraesCS3D01G333100 chr4B 83.908 87 14 0 1652 1738 611553106 611553020 2.240000e-12 84.2
32 TraesCS3D01G333100 chr5B 84.064 251 33 5 71 318 393695100 393695346 5.840000e-58 235.0
33 TraesCS3D01G333100 chr5B 81.200 250 40 6 1502 1749 267779038 267778794 9.920000e-46 195.0
34 TraesCS3D01G333100 chr5B 87.963 108 10 3 2568 2674 689176575 689176680 1.320000e-24 124.0
35 TraesCS3D01G333100 chr5B 91.667 60 4 1 2568 2626 537532915 537532974 8.060000e-12 82.4
36 TraesCS3D01G333100 chr5B 86.885 61 6 2 2614 2672 483013437 483013497 2.260000e-07 67.6
37 TraesCS3D01G333100 chr5B 100.000 28 0 0 2674 2701 706726592 706726619 6.000000e-03 52.8
38 TraesCS3D01G333100 chr4A 84.454 238 25 6 1515 1752 521919704 521919479 1.260000e-54 224.0
39 TraesCS3D01G333100 chr4D 84.034 238 26 6 1515 1752 69679956 69679731 5.890000e-53 219.0
40 TraesCS3D01G333100 chr4D 83.908 87 14 0 1652 1738 481912154 481912068 2.240000e-12 84.2
41 TraesCS3D01G333100 chr7B 82.591 247 37 3 72 316 541718363 541718605 2.740000e-51 213.0
42 TraesCS3D01G333100 chr7B 76.974 152 32 2 1593 1744 436787502 436787354 2.240000e-12 84.2
43 TraesCS3D01G333100 chr2A 87.778 180 22 0 71 250 459017013 459017192 9.850000e-51 211.0
44 TraesCS3D01G333100 chr2A 80.420 143 3 6 2565 2698 179289185 179289311 6.230000e-13 86.1
45 TraesCS3D01G333100 chr2A 78.082 146 24 5 1268 1409 572616092 572615951 6.230000e-13 86.1
46 TraesCS3D01G333100 chr2A 75.694 144 19 13 2565 2699 768471431 768471295 1.360000e-04 58.4
47 TraesCS3D01G333100 chr5A 82.000 250 38 6 1502 1749 317247921 317247677 4.580000e-49 206.0
48 TraesCS3D01G333100 chr5A 88.608 79 8 1 2549 2626 552517022 552517100 1.030000e-15 95.3
49 TraesCS3D01G333100 chr5A 89.091 55 4 2 2620 2672 571787638 571787584 2.260000e-07 67.6
50 TraesCS3D01G333100 chr5A 83.333 78 5 4 2631 2701 451462873 451462797 8.110000e-07 65.8
51 TraesCS3D01G333100 chr1B 80.392 255 42 4 71 317 42335118 42334864 1.660000e-43 187.0
52 TraesCS3D01G333100 chr6B 93.421 76 4 1 250 325 550314444 550314370 1.030000e-20 111.0
53 TraesCS3D01G333100 chr7A 95.522 67 3 0 2560 2626 409866212 409866146 1.330000e-19 108.0
54 TraesCS3D01G333100 chr7A 96.825 63 2 0 2564 2626 117279099 117279161 4.780000e-19 106.0
55 TraesCS3D01G333100 chr7A 78.289 152 30 2 1593 1744 512329043 512329191 1.030000e-15 95.3
56 TraesCS3D01G333100 chr6A 96.825 63 2 0 2564 2626 124130684 124130746 4.780000e-19 106.0
57 TraesCS3D01G333100 chr1A 84.762 105 14 2 2569 2672 514616795 514616898 1.720000e-18 104.0
58 TraesCS3D01G333100 chr1A 90.000 80 4 3 2547 2626 417496017 417496092 2.220000e-17 100.0
59 TraesCS3D01G333100 chr1A 100.000 29 0 0 2672 2700 318497963 318497991 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G333100 chr3D 445035951 445039452 3501 True 6468.0 6468 100.0000 1 3502 1 chr3D.!!$R3 3501
1 TraesCS3D01G333100 chr3A 586420792 586423919 3127 True 2046.5 2992 89.8765 413 3502 2 chr3A.!!$R1 3089
2 TraesCS3D01G333100 chr3B 583390614 583393726 3112 True 2069.0 2911 92.1475 413 3502 2 chr3B.!!$R3 3089

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
93 94 0.031585 AGTACAGACGCAAACGCTCA 59.968 50.0 0.0 0.0 45.53 4.26 F
278 279 0.033503 CCTGGTGGGTTGGGGATAAC 60.034 60.0 0.0 0.0 0.00 1.89 F
319 320 0.039256 CCACAGGTTGGTTCGCAATG 60.039 55.0 0.0 0.0 41.10 2.82 F
320 321 0.039256 CACAGGTTGGTTCGCAATGG 60.039 55.0 0.0 0.0 0.00 3.16 F
325 326 0.039527 GTTGGTTCGCAATGGGTCAC 60.040 55.0 0.0 0.0 0.00 3.67 F
326 327 0.179004 TTGGTTCGCAATGGGTCACT 60.179 50.0 0.0 0.0 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1165 1235 0.032678 CGTCATCATTCTCCTCCCCG 59.967 60.000 0.00 0.0 0.00 5.73 R
1167 1237 0.250081 GCCGTCATCATTCTCCTCCC 60.250 60.000 0.00 0.0 0.00 4.30 R
1880 2044 0.888736 CACAGCACCCATTCGTCCAA 60.889 55.000 0.00 0.0 0.00 3.53 R
2014 2178 1.300931 GTGCGTCTGGAAGCTGTCA 60.301 57.895 9.55 0.0 36.75 3.58 R
2317 2481 9.753674 TCCAATAATTTACACCAGATCTTTCTT 57.246 29.630 0.00 0.0 0.00 2.52 R
2513 2687 4.649218 ACAAGTTTGGTGTTTAGGCTTGAT 59.351 37.500 8.15 0.0 36.38 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 7.807977 AAAATATCTTATGCTCCATTGACGT 57.192 32.000 0.00 0.00 0.00 4.34
40 41 7.807977 AAATATCTTATGCTCCATTGACGTT 57.192 32.000 0.00 0.00 0.00 3.99
41 42 7.807977 AATATCTTATGCTCCATTGACGTTT 57.192 32.000 0.00 0.00 0.00 3.60
42 43 7.807977 ATATCTTATGCTCCATTGACGTTTT 57.192 32.000 0.00 0.00 0.00 2.43
43 44 5.957842 TCTTATGCTCCATTGACGTTTTT 57.042 34.783 0.00 0.00 0.00 1.94
44 45 5.938322 TCTTATGCTCCATTGACGTTTTTC 58.062 37.500 0.00 0.00 0.00 2.29
45 46 5.705441 TCTTATGCTCCATTGACGTTTTTCT 59.295 36.000 0.00 0.00 0.00 2.52
46 47 4.853924 ATGCTCCATTGACGTTTTTCTT 57.146 36.364 0.00 0.00 0.00 2.52
47 48 4.647424 TGCTCCATTGACGTTTTTCTTT 57.353 36.364 0.00 0.00 0.00 2.52
48 49 5.004922 TGCTCCATTGACGTTTTTCTTTT 57.995 34.783 0.00 0.00 0.00 2.27
49 50 5.415221 TGCTCCATTGACGTTTTTCTTTTT 58.585 33.333 0.00 0.00 0.00 1.94
72 73 9.601217 TTTTTAAATTTAGCCTACAAAAGCACA 57.399 25.926 0.00 0.00 0.00 4.57
73 74 9.771534 TTTTAAATTTAGCCTACAAAAGCACAT 57.228 25.926 0.00 0.00 0.00 3.21
76 77 7.703058 AATTTAGCCTACAAAAGCACATAGT 57.297 32.000 0.00 0.00 0.00 2.12
77 78 8.801882 AATTTAGCCTACAAAAGCACATAGTA 57.198 30.769 0.00 0.00 0.00 1.82
78 79 7.605410 TTTAGCCTACAAAAGCACATAGTAC 57.395 36.000 0.00 0.00 0.00 2.73
79 80 5.160607 AGCCTACAAAAGCACATAGTACA 57.839 39.130 0.00 0.00 0.00 2.90
80 81 5.178797 AGCCTACAAAAGCACATAGTACAG 58.821 41.667 0.00 0.00 0.00 2.74
81 82 5.046591 AGCCTACAAAAGCACATAGTACAGA 60.047 40.000 0.00 0.00 0.00 3.41
82 83 5.063564 GCCTACAAAAGCACATAGTACAGAC 59.936 44.000 0.00 0.00 0.00 3.51
83 84 5.288712 CCTACAAAAGCACATAGTACAGACG 59.711 44.000 0.00 0.00 0.00 4.18
84 85 3.432252 ACAAAAGCACATAGTACAGACGC 59.568 43.478 0.00 0.00 0.00 5.19
85 86 3.313012 AAAGCACATAGTACAGACGCA 57.687 42.857 0.00 0.00 0.00 5.24
86 87 3.313012 AAGCACATAGTACAGACGCAA 57.687 42.857 0.00 0.00 0.00 4.85
87 88 3.313012 AGCACATAGTACAGACGCAAA 57.687 42.857 0.00 0.00 0.00 3.68
88 89 2.993899 AGCACATAGTACAGACGCAAAC 59.006 45.455 0.00 0.00 0.00 2.93
90 91 1.990563 ACATAGTACAGACGCAAACGC 59.009 47.619 0.00 0.00 45.53 4.84
91 92 2.259618 CATAGTACAGACGCAAACGCT 58.740 47.619 0.00 0.00 45.53 5.07
92 93 1.973138 TAGTACAGACGCAAACGCTC 58.027 50.000 0.00 0.00 45.53 5.03
93 94 0.031585 AGTACAGACGCAAACGCTCA 59.968 50.000 0.00 0.00 45.53 4.26
94 95 1.068474 GTACAGACGCAAACGCTCAT 58.932 50.000 0.00 0.00 45.53 2.90
95 96 2.094906 AGTACAGACGCAAACGCTCATA 60.095 45.455 0.00 0.00 45.53 2.15
96 97 1.068474 ACAGACGCAAACGCTCATAC 58.932 50.000 0.00 0.00 45.53 2.39
97 98 1.067693 CAGACGCAAACGCTCATACA 58.932 50.000 0.00 0.00 45.53 2.29
98 99 1.660607 CAGACGCAAACGCTCATACAT 59.339 47.619 0.00 0.00 45.53 2.29
99 100 2.857748 CAGACGCAAACGCTCATACATA 59.142 45.455 0.00 0.00 45.53 2.29
100 101 3.490896 CAGACGCAAACGCTCATACATAT 59.509 43.478 0.00 0.00 45.53 1.78
101 102 3.490896 AGACGCAAACGCTCATACATATG 59.509 43.478 0.00 0.00 45.53 1.78
102 103 2.032894 ACGCAAACGCTCATACATATGC 60.033 45.455 1.58 0.00 45.53 3.14
108 109 3.559530 CGCTCATACATATGCGCATAC 57.440 47.619 31.17 15.14 42.77 2.39
109 110 2.923020 CGCTCATACATATGCGCATACA 59.077 45.455 31.17 19.39 42.77 2.29
110 111 3.241773 CGCTCATACATATGCGCATACAC 60.242 47.826 31.17 13.33 42.77 2.90
111 112 3.062639 GCTCATACATATGCGCATACACC 59.937 47.826 31.17 10.70 42.33 4.16
112 113 3.595173 TCATACATATGCGCATACACCC 58.405 45.455 31.17 0.00 33.76 4.61
113 114 3.007398 TCATACATATGCGCATACACCCA 59.993 43.478 31.17 11.70 33.76 4.51
114 115 1.882912 ACATATGCGCATACACCCAG 58.117 50.000 31.17 18.08 0.00 4.45
115 116 0.518636 CATATGCGCATACACCCAGC 59.481 55.000 31.17 0.00 0.00 4.85
116 117 0.606401 ATATGCGCATACACCCAGCC 60.606 55.000 31.17 0.00 0.00 4.85
117 118 2.674563 TATGCGCATACACCCAGCCC 62.675 60.000 25.78 0.00 0.00 5.19
118 119 4.489771 GCGCATACACCCAGCCCT 62.490 66.667 0.30 0.00 0.00 5.19
119 120 3.101796 GCGCATACACCCAGCCCTA 62.102 63.158 0.30 0.00 0.00 3.53
120 121 1.227556 CGCATACACCCAGCCCTAC 60.228 63.158 0.00 0.00 0.00 3.18
121 122 1.227556 GCATACACCCAGCCCTACG 60.228 63.158 0.00 0.00 0.00 3.51
122 123 1.682451 GCATACACCCAGCCCTACGA 61.682 60.000 0.00 0.00 0.00 3.43
123 124 0.828022 CATACACCCAGCCCTACGAA 59.172 55.000 0.00 0.00 0.00 3.85
124 125 0.828677 ATACACCCAGCCCTACGAAC 59.171 55.000 0.00 0.00 0.00 3.95
125 126 1.597797 TACACCCAGCCCTACGAACG 61.598 60.000 0.00 0.00 0.00 3.95
126 127 4.078516 ACCCAGCCCTACGAACGC 62.079 66.667 0.00 0.00 0.00 4.84
127 128 4.077184 CCCAGCCCTACGAACGCA 62.077 66.667 0.00 0.00 0.00 5.24
128 129 2.813908 CCAGCCCTACGAACGCAC 60.814 66.667 0.00 0.00 0.00 5.34
129 130 2.048597 CAGCCCTACGAACGCACA 60.049 61.111 0.00 0.00 0.00 4.57
130 131 2.048503 AGCCCTACGAACGCACAC 60.049 61.111 0.00 0.00 0.00 3.82
131 132 2.356553 GCCCTACGAACGCACACA 60.357 61.111 0.00 0.00 0.00 3.72
132 133 1.740296 GCCCTACGAACGCACACAT 60.740 57.895 0.00 0.00 0.00 3.21
133 134 1.966493 GCCCTACGAACGCACACATG 61.966 60.000 0.00 0.00 0.00 3.21
146 147 2.341257 CACACATGCACACTCTACTCC 58.659 52.381 0.00 0.00 0.00 3.85
147 148 2.028658 CACACATGCACACTCTACTCCT 60.029 50.000 0.00 0.00 0.00 3.69
148 149 3.193479 CACACATGCACACTCTACTCCTA 59.807 47.826 0.00 0.00 0.00 2.94
149 150 4.026744 ACACATGCACACTCTACTCCTAT 58.973 43.478 0.00 0.00 0.00 2.57
150 151 5.067805 CACACATGCACACTCTACTCCTATA 59.932 44.000 0.00 0.00 0.00 1.31
151 152 5.656859 ACACATGCACACTCTACTCCTATAA 59.343 40.000 0.00 0.00 0.00 0.98
152 153 6.183360 ACACATGCACACTCTACTCCTATAAG 60.183 42.308 0.00 0.00 0.00 1.73
153 154 4.920640 TGCACACTCTACTCCTATAAGC 57.079 45.455 0.00 0.00 0.00 3.09
154 155 4.278310 TGCACACTCTACTCCTATAAGCA 58.722 43.478 0.00 0.00 0.00 3.91
155 156 4.098044 TGCACACTCTACTCCTATAAGCAC 59.902 45.833 0.00 0.00 0.00 4.40
156 157 4.339814 GCACACTCTACTCCTATAAGCACT 59.660 45.833 0.00 0.00 0.00 4.40
157 158 5.163499 GCACACTCTACTCCTATAAGCACTT 60.163 44.000 0.00 0.00 0.00 3.16
158 159 6.628398 GCACACTCTACTCCTATAAGCACTTT 60.628 42.308 0.00 0.00 0.00 2.66
159 160 6.975772 CACACTCTACTCCTATAAGCACTTTC 59.024 42.308 0.00 0.00 0.00 2.62
160 161 6.663953 ACACTCTACTCCTATAAGCACTTTCA 59.336 38.462 0.00 0.00 0.00 2.69
161 162 7.178628 ACACTCTACTCCTATAAGCACTTTCAA 59.821 37.037 0.00 0.00 0.00 2.69
162 163 7.704472 CACTCTACTCCTATAAGCACTTTCAAG 59.296 40.741 0.00 0.00 0.00 3.02
163 164 7.616150 ACTCTACTCCTATAAGCACTTTCAAGA 59.384 37.037 0.00 0.00 0.00 3.02
164 165 8.001881 TCTACTCCTATAAGCACTTTCAAGAG 57.998 38.462 0.00 0.00 0.00 2.85
165 166 6.859112 ACTCCTATAAGCACTTTCAAGAGA 57.141 37.500 0.00 0.00 0.00 3.10
166 167 6.635755 ACTCCTATAAGCACTTTCAAGAGAC 58.364 40.000 0.00 0.00 0.00 3.36
167 168 5.978814 TCCTATAAGCACTTTCAAGAGACC 58.021 41.667 0.00 0.00 0.00 3.85
168 169 4.806247 CCTATAAGCACTTTCAAGAGACCG 59.194 45.833 0.00 0.00 0.00 4.79
169 170 2.910688 AAGCACTTTCAAGAGACCGA 57.089 45.000 0.00 0.00 0.00 4.69
170 171 2.447244 AGCACTTTCAAGAGACCGAG 57.553 50.000 0.00 0.00 0.00 4.63
171 172 0.793250 GCACTTTCAAGAGACCGAGC 59.207 55.000 0.00 0.00 0.00 5.03
172 173 1.606737 GCACTTTCAAGAGACCGAGCT 60.607 52.381 0.00 0.00 0.00 4.09
173 174 2.064762 CACTTTCAAGAGACCGAGCTG 58.935 52.381 0.00 0.00 0.00 4.24
174 175 1.001406 ACTTTCAAGAGACCGAGCTGG 59.999 52.381 0.00 0.00 46.41 4.85
175 176 0.320771 TTTCAAGAGACCGAGCTGGC 60.321 55.000 0.00 0.00 43.94 4.85
176 177 1.471829 TTCAAGAGACCGAGCTGGCA 61.472 55.000 0.00 0.00 43.94 4.92
177 178 1.220206 CAAGAGACCGAGCTGGCAT 59.780 57.895 0.00 0.00 43.94 4.40
178 179 0.461548 CAAGAGACCGAGCTGGCATA 59.538 55.000 0.00 0.00 43.94 3.14
179 180 1.069823 CAAGAGACCGAGCTGGCATAT 59.930 52.381 0.00 0.00 43.94 1.78
180 181 0.965439 AGAGACCGAGCTGGCATATC 59.035 55.000 0.00 0.00 43.94 1.63
181 182 0.676184 GAGACCGAGCTGGCATATCA 59.324 55.000 0.00 0.00 43.94 2.15
182 183 1.274728 GAGACCGAGCTGGCATATCAT 59.725 52.381 0.00 0.00 43.94 2.45
183 184 1.274728 AGACCGAGCTGGCATATCATC 59.725 52.381 0.00 0.00 43.94 2.92
184 185 1.274728 GACCGAGCTGGCATATCATCT 59.725 52.381 0.00 0.00 43.94 2.90
185 186 1.696336 ACCGAGCTGGCATATCATCTT 59.304 47.619 0.00 0.00 43.94 2.40
186 187 2.074576 CCGAGCTGGCATATCATCTTG 58.925 52.381 0.00 0.00 0.00 3.02
187 188 2.289257 CCGAGCTGGCATATCATCTTGA 60.289 50.000 0.00 0.00 0.00 3.02
188 189 2.994578 CGAGCTGGCATATCATCTTGAG 59.005 50.000 0.00 0.00 0.00 3.02
189 190 3.305881 CGAGCTGGCATATCATCTTGAGA 60.306 47.826 0.00 0.00 0.00 3.27
190 191 4.621038 CGAGCTGGCATATCATCTTGAGAT 60.621 45.833 0.00 0.00 34.56 2.75
191 192 5.244189 AGCTGGCATATCATCTTGAGATT 57.756 39.130 0.00 0.00 31.21 2.40
192 193 5.632118 AGCTGGCATATCATCTTGAGATTT 58.368 37.500 0.00 0.00 31.21 2.17
193 194 6.776744 AGCTGGCATATCATCTTGAGATTTA 58.223 36.000 0.00 0.00 31.21 1.40
194 195 6.654161 AGCTGGCATATCATCTTGAGATTTAC 59.346 38.462 0.00 0.00 31.21 2.01
195 196 6.401903 GCTGGCATATCATCTTGAGATTTACG 60.402 42.308 0.00 0.00 31.21 3.18
196 197 6.758254 TGGCATATCATCTTGAGATTTACGA 58.242 36.000 0.00 0.00 31.21 3.43
197 198 7.216494 TGGCATATCATCTTGAGATTTACGAA 58.784 34.615 0.00 0.00 31.21 3.85
198 199 7.386025 TGGCATATCATCTTGAGATTTACGAAG 59.614 37.037 0.00 0.00 31.21 3.79
199 200 7.386299 GGCATATCATCTTGAGATTTACGAAGT 59.614 37.037 0.00 0.00 37.29 3.01
200 201 8.431593 GCATATCATCTTGAGATTTACGAAGTC 58.568 37.037 0.00 0.00 35.39 3.01
201 202 9.468532 CATATCATCTTGAGATTTACGAAGTCA 57.531 33.333 0.00 0.00 35.39 3.41
202 203 7.763172 ATCATCTTGAGATTTACGAAGTCAC 57.237 36.000 0.00 0.00 35.39 3.67
203 204 6.925211 TCATCTTGAGATTTACGAAGTCACT 58.075 36.000 0.00 0.00 35.39 3.41
204 205 8.051901 TCATCTTGAGATTTACGAAGTCACTA 57.948 34.615 0.00 0.00 35.39 2.74
205 206 8.687242 TCATCTTGAGATTTACGAAGTCACTAT 58.313 33.333 0.00 0.00 35.39 2.12
206 207 9.952188 CATCTTGAGATTTACGAAGTCACTATA 57.048 33.333 0.00 0.00 35.39 1.31
207 208 9.953697 ATCTTGAGATTTACGAAGTCACTATAC 57.046 33.333 0.00 0.00 43.93 1.47
208 209 8.121086 TCTTGAGATTTACGAAGTCACTATACG 58.879 37.037 0.00 0.00 43.93 3.06
209 210 6.197276 TGAGATTTACGAAGTCACTATACGC 58.803 40.000 0.00 0.00 43.93 4.42
210 211 5.203370 AGATTTACGAAGTCACTATACGCG 58.797 41.667 3.53 3.53 43.93 6.01
211 212 4.340894 TTTACGAAGTCACTATACGCGT 57.659 40.909 19.17 19.17 43.93 6.01
212 213 2.448726 ACGAAGTCACTATACGCGTC 57.551 50.000 18.63 0.00 29.74 5.19
213 214 2.005451 ACGAAGTCACTATACGCGTCT 58.995 47.619 18.63 9.26 29.74 4.18
214 215 2.030213 ACGAAGTCACTATACGCGTCTC 59.970 50.000 18.63 0.00 29.74 3.36
215 216 2.626892 GAAGTCACTATACGCGTCTCG 58.373 52.381 18.63 4.46 45.38 4.04
224 225 4.131581 CGCGTCTCGTCGTCGACT 62.132 66.667 22.18 0.00 41.35 4.18
225 226 2.571096 GCGTCTCGTCGTCGACTG 60.571 66.667 22.18 15.49 41.35 3.51
226 227 3.008240 GCGTCTCGTCGTCGACTGA 62.008 63.158 22.18 18.41 41.35 3.41
227 228 1.490258 CGTCTCGTCGTCGACTGAA 59.510 57.895 22.18 7.65 41.35 3.02
228 229 0.094901 CGTCTCGTCGTCGACTGAAT 59.905 55.000 22.18 0.00 41.35 2.57
229 230 1.800399 GTCTCGTCGTCGACTGAATC 58.200 55.000 22.18 12.30 41.35 2.52
238 239 3.928343 CGACTGAATCGTCTCCTCC 57.072 57.895 4.38 0.00 46.25 4.30
239 240 0.382515 CGACTGAATCGTCTCCTCCC 59.617 60.000 4.38 0.00 46.25 4.30
240 241 1.475403 GACTGAATCGTCTCCTCCCA 58.525 55.000 0.00 0.00 0.00 4.37
241 242 1.135333 GACTGAATCGTCTCCTCCCAC 59.865 57.143 0.00 0.00 0.00 4.61
242 243 0.101399 CTGAATCGTCTCCTCCCACG 59.899 60.000 0.00 0.00 37.36 4.94
245 246 4.506039 TCGTCTCCTCCCACGAAA 57.494 55.556 0.00 0.00 41.92 3.46
246 247 2.736197 TCGTCTCCTCCCACGAAAA 58.264 52.632 0.00 0.00 41.92 2.29
247 248 0.601558 TCGTCTCCTCCCACGAAAAG 59.398 55.000 0.00 0.00 41.92 2.27
248 249 1.014564 CGTCTCCTCCCACGAAAAGC 61.015 60.000 0.00 0.00 38.32 3.51
250 251 1.741770 CTCCTCCCACGAAAAGCGG 60.742 63.158 0.00 0.00 46.49 5.52
251 252 2.167398 CTCCTCCCACGAAAAGCGGA 62.167 60.000 0.00 0.00 46.49 5.54
252 253 2.033194 CCTCCCACGAAAAGCGGAC 61.033 63.158 0.00 0.00 46.49 4.79
253 254 1.004918 CTCCCACGAAAAGCGGACT 60.005 57.895 0.00 0.00 46.49 3.85
254 255 0.602905 CTCCCACGAAAAGCGGACTT 60.603 55.000 0.00 0.00 46.49 3.01
255 256 0.882927 TCCCACGAAAAGCGGACTTG 60.883 55.000 0.00 0.00 46.49 3.16
256 257 0.882927 CCCACGAAAAGCGGACTTGA 60.883 55.000 0.00 0.00 46.49 3.02
257 258 0.941542 CCACGAAAAGCGGACTTGAA 59.058 50.000 0.00 0.00 46.49 2.69
258 259 1.535462 CCACGAAAAGCGGACTTGAAT 59.465 47.619 0.00 0.00 46.49 2.57
259 260 2.412847 CCACGAAAAGCGGACTTGAATC 60.413 50.000 0.00 0.00 46.49 2.52
260 261 1.804748 ACGAAAAGCGGACTTGAATCC 59.195 47.619 0.00 0.00 46.49 3.01
261 262 2.076863 CGAAAAGCGGACTTGAATCCT 58.923 47.619 0.00 0.00 35.85 3.24
262 263 2.159653 CGAAAAGCGGACTTGAATCCTG 60.160 50.000 0.00 0.00 35.85 3.86
263 264 1.826385 AAAGCGGACTTGAATCCTGG 58.174 50.000 0.00 0.00 35.85 4.45
264 265 0.693049 AAGCGGACTTGAATCCTGGT 59.307 50.000 0.00 0.00 36.52 4.00
265 266 0.036010 AGCGGACTTGAATCCTGGTG 60.036 55.000 0.00 0.00 36.52 4.17
266 267 1.026718 GCGGACTTGAATCCTGGTGG 61.027 60.000 0.00 0.00 36.52 4.61
267 268 0.392998 CGGACTTGAATCCTGGTGGG 60.393 60.000 0.00 0.00 36.52 4.61
268 269 0.698818 GGACTTGAATCCTGGTGGGT 59.301 55.000 0.00 0.00 35.68 4.51
269 270 1.075536 GGACTTGAATCCTGGTGGGTT 59.924 52.381 0.00 0.00 39.88 4.11
270 271 2.162681 GACTTGAATCCTGGTGGGTTG 58.837 52.381 0.00 0.00 36.67 3.77
271 272 1.203050 ACTTGAATCCTGGTGGGTTGG 60.203 52.381 0.00 0.00 36.67 3.77
272 273 0.114168 TTGAATCCTGGTGGGTTGGG 59.886 55.000 0.00 0.00 36.67 4.12
273 274 1.000359 GAATCCTGGTGGGTTGGGG 60.000 63.158 0.00 0.00 36.67 4.96
274 275 1.467190 AATCCTGGTGGGTTGGGGA 60.467 57.895 0.00 0.00 34.88 4.81
275 276 0.855400 AATCCTGGTGGGTTGGGGAT 60.855 55.000 0.00 0.00 34.88 3.85
276 277 0.047176 ATCCTGGTGGGTTGGGGATA 59.953 55.000 0.00 0.00 35.34 2.59
277 278 0.178828 TCCTGGTGGGTTGGGGATAA 60.179 55.000 0.00 0.00 36.25 1.75
278 279 0.033503 CCTGGTGGGTTGGGGATAAC 60.034 60.000 0.00 0.00 0.00 1.89
279 280 0.701731 CTGGTGGGTTGGGGATAACA 59.298 55.000 0.00 0.00 32.22 2.41
280 281 0.406361 TGGTGGGTTGGGGATAACAC 59.594 55.000 0.00 0.00 34.56 3.32
281 282 0.702316 GGTGGGTTGGGGATAACACT 59.298 55.000 0.00 0.00 35.04 3.55
282 283 1.615919 GGTGGGTTGGGGATAACACTG 60.616 57.143 0.00 0.00 35.04 3.66
283 284 1.074889 GTGGGTTGGGGATAACACTGT 59.925 52.381 0.00 0.00 35.04 3.55
284 285 1.353022 TGGGTTGGGGATAACACTGTC 59.647 52.381 0.00 0.00 35.04 3.51
285 286 1.340697 GGGTTGGGGATAACACTGTCC 60.341 57.143 0.00 0.00 31.30 4.02
293 294 4.403585 GGATAACACTGTCCCTCTAACC 57.596 50.000 0.00 0.00 0.00 2.85
294 295 3.773119 GGATAACACTGTCCCTCTAACCA 59.227 47.826 0.00 0.00 0.00 3.67
295 296 4.409247 GGATAACACTGTCCCTCTAACCAT 59.591 45.833 0.00 0.00 0.00 3.55
296 297 3.983044 AACACTGTCCCTCTAACCATC 57.017 47.619 0.00 0.00 0.00 3.51
297 298 2.188817 ACACTGTCCCTCTAACCATCC 58.811 52.381 0.00 0.00 0.00 3.51
298 299 2.187958 CACTGTCCCTCTAACCATCCA 58.812 52.381 0.00 0.00 0.00 3.41
299 300 2.571653 CACTGTCCCTCTAACCATCCAA 59.428 50.000 0.00 0.00 0.00 3.53
300 301 2.572104 ACTGTCCCTCTAACCATCCAAC 59.428 50.000 0.00 0.00 0.00 3.77
301 302 1.913419 TGTCCCTCTAACCATCCAACC 59.087 52.381 0.00 0.00 0.00 3.77
302 303 1.913419 GTCCCTCTAACCATCCAACCA 59.087 52.381 0.00 0.00 0.00 3.67
303 304 1.913419 TCCCTCTAACCATCCAACCAC 59.087 52.381 0.00 0.00 0.00 4.16
304 305 1.633432 CCCTCTAACCATCCAACCACA 59.367 52.381 0.00 0.00 0.00 4.17
305 306 2.356125 CCCTCTAACCATCCAACCACAG 60.356 54.545 0.00 0.00 0.00 3.66
306 307 2.356125 CCTCTAACCATCCAACCACAGG 60.356 54.545 0.00 0.00 0.00 4.00
307 308 2.305927 CTCTAACCATCCAACCACAGGT 59.694 50.000 0.00 0.00 37.65 4.00
317 318 3.834726 CCACAGGTTGGTTCGCAA 58.165 55.556 0.00 0.00 41.10 4.85
318 319 2.340427 CCACAGGTTGGTTCGCAAT 58.660 52.632 0.00 0.00 41.10 3.56
319 320 0.039256 CCACAGGTTGGTTCGCAATG 60.039 55.000 0.00 0.00 41.10 2.82
320 321 0.039256 CACAGGTTGGTTCGCAATGG 60.039 55.000 0.00 0.00 0.00 3.16
321 322 1.178534 ACAGGTTGGTTCGCAATGGG 61.179 55.000 0.00 0.00 0.00 4.00
322 323 1.152830 AGGTTGGTTCGCAATGGGT 59.847 52.632 0.00 0.00 0.00 4.51
323 324 0.893727 AGGTTGGTTCGCAATGGGTC 60.894 55.000 0.00 0.00 0.00 4.46
324 325 1.175983 GGTTGGTTCGCAATGGGTCA 61.176 55.000 0.00 0.00 0.00 4.02
325 326 0.039527 GTTGGTTCGCAATGGGTCAC 60.040 55.000 0.00 0.00 0.00 3.67
326 327 0.179004 TTGGTTCGCAATGGGTCACT 60.179 50.000 0.00 0.00 0.00 3.41
327 328 0.179004 TGGTTCGCAATGGGTCACTT 60.179 50.000 0.00 0.00 0.00 3.16
328 329 1.072489 TGGTTCGCAATGGGTCACTTA 59.928 47.619 0.00 0.00 0.00 2.24
329 330 2.156098 GGTTCGCAATGGGTCACTTAA 58.844 47.619 0.00 0.00 0.00 1.85
330 331 2.095415 GGTTCGCAATGGGTCACTTAAC 60.095 50.000 0.00 0.00 0.00 2.01
331 332 2.812011 GTTCGCAATGGGTCACTTAACT 59.188 45.455 0.00 0.00 0.00 2.24
332 333 3.965379 TCGCAATGGGTCACTTAACTA 57.035 42.857 0.00 0.00 0.00 2.24
333 334 4.481368 TCGCAATGGGTCACTTAACTAT 57.519 40.909 0.00 0.00 0.00 2.12
334 335 5.601583 TCGCAATGGGTCACTTAACTATA 57.398 39.130 0.00 0.00 0.00 1.31
335 336 5.979993 TCGCAATGGGTCACTTAACTATAA 58.020 37.500 0.00 0.00 0.00 0.98
336 337 6.408035 TCGCAATGGGTCACTTAACTATAAA 58.592 36.000 0.00 0.00 0.00 1.40
337 338 6.314400 TCGCAATGGGTCACTTAACTATAAAC 59.686 38.462 0.00 0.00 0.00 2.01
338 339 6.092944 CGCAATGGGTCACTTAACTATAAACA 59.907 38.462 0.00 0.00 0.00 2.83
339 340 7.201696 CGCAATGGGTCACTTAACTATAAACAT 60.202 37.037 0.00 0.00 0.00 2.71
340 341 9.116067 GCAATGGGTCACTTAACTATAAACATA 57.884 33.333 0.00 0.00 0.00 2.29
344 345 9.661563 TGGGTCACTTAACTATAAACATAACAG 57.338 33.333 0.00 0.00 0.00 3.16
345 346 9.106070 GGGTCACTTAACTATAAACATAACAGG 57.894 37.037 0.00 0.00 0.00 4.00
346 347 8.610035 GGTCACTTAACTATAAACATAACAGGC 58.390 37.037 0.00 0.00 0.00 4.85
347 348 9.158233 GTCACTTAACTATAAACATAACAGGCA 57.842 33.333 0.00 0.00 0.00 4.75
348 349 9.158233 TCACTTAACTATAAACATAACAGGCAC 57.842 33.333 0.00 0.00 0.00 5.01
349 350 8.114290 CACTTAACTATAAACATAACAGGCACG 58.886 37.037 0.00 0.00 0.00 5.34
350 351 5.479716 AACTATAAACATAACAGGCACGC 57.520 39.130 0.00 0.00 0.00 5.34
351 352 4.766375 ACTATAAACATAACAGGCACGCT 58.234 39.130 0.00 0.00 0.00 5.07
352 353 5.183228 ACTATAAACATAACAGGCACGCTT 58.817 37.500 0.00 0.00 0.00 4.68
353 354 2.704725 AAACATAACAGGCACGCTTG 57.295 45.000 0.00 0.00 0.00 4.01
362 363 4.090057 GCACGCTTGCGTTCCCTC 62.090 66.667 18.29 2.22 39.50 4.30
363 364 2.664851 CACGCTTGCGTTCCCTCA 60.665 61.111 18.29 0.00 0.00 3.86
364 365 2.034879 CACGCTTGCGTTCCCTCAT 61.035 57.895 18.29 0.00 0.00 2.90
365 366 2.034879 ACGCTTGCGTTCCCTCATG 61.035 57.895 15.19 0.00 0.00 3.07
366 367 2.034879 CGCTTGCGTTCCCTCATGT 61.035 57.895 6.86 0.00 0.00 3.21
367 368 1.577328 CGCTTGCGTTCCCTCATGTT 61.577 55.000 6.86 0.00 0.00 2.71
368 369 0.598065 GCTTGCGTTCCCTCATGTTT 59.402 50.000 0.00 0.00 0.00 2.83
369 370 1.810151 GCTTGCGTTCCCTCATGTTTA 59.190 47.619 0.00 0.00 0.00 2.01
370 371 2.227865 GCTTGCGTTCCCTCATGTTTAA 59.772 45.455 0.00 0.00 0.00 1.52
371 372 3.670627 GCTTGCGTTCCCTCATGTTTAAG 60.671 47.826 0.00 0.00 0.00 1.85
372 373 1.810151 TGCGTTCCCTCATGTTTAAGC 59.190 47.619 0.00 0.00 0.00 3.09
373 374 2.084546 GCGTTCCCTCATGTTTAAGCT 58.915 47.619 0.00 0.00 0.00 3.74
374 375 3.267483 GCGTTCCCTCATGTTTAAGCTA 58.733 45.455 0.00 0.00 0.00 3.32
375 376 3.063588 GCGTTCCCTCATGTTTAAGCTAC 59.936 47.826 0.00 0.00 0.00 3.58
376 377 3.621715 CGTTCCCTCATGTTTAAGCTACC 59.378 47.826 0.00 0.00 0.00 3.18
377 378 3.926058 TCCCTCATGTTTAAGCTACCC 57.074 47.619 0.00 0.00 0.00 3.69
378 379 2.169769 TCCCTCATGTTTAAGCTACCCG 59.830 50.000 0.00 0.00 0.00 5.28
379 380 2.093128 CCCTCATGTTTAAGCTACCCGT 60.093 50.000 0.00 0.00 0.00 5.28
380 381 3.195661 CCTCATGTTTAAGCTACCCGTC 58.804 50.000 0.00 0.00 0.00 4.79
381 382 2.858344 CTCATGTTTAAGCTACCCGTCG 59.142 50.000 0.00 0.00 0.00 5.12
382 383 2.231964 TCATGTTTAAGCTACCCGTCGT 59.768 45.455 0.00 0.00 0.00 4.34
383 384 3.443329 TCATGTTTAAGCTACCCGTCGTA 59.557 43.478 0.00 0.00 0.00 3.43
384 385 3.932545 TGTTTAAGCTACCCGTCGTAA 57.067 42.857 0.00 0.00 0.00 3.18
385 386 4.250116 TGTTTAAGCTACCCGTCGTAAA 57.750 40.909 0.00 0.00 0.00 2.01
386 387 4.236935 TGTTTAAGCTACCCGTCGTAAAG 58.763 43.478 0.00 0.00 0.00 1.85
387 388 3.508744 TTAAGCTACCCGTCGTAAAGG 57.491 47.619 0.00 0.00 0.00 3.11
388 389 1.549203 AAGCTACCCGTCGTAAAGGA 58.451 50.000 0.00 0.00 0.00 3.36
389 390 1.772836 AGCTACCCGTCGTAAAGGAT 58.227 50.000 0.00 0.00 0.00 3.24
390 391 1.407979 AGCTACCCGTCGTAAAGGATG 59.592 52.381 0.00 0.00 0.00 3.51
391 392 1.537562 GCTACCCGTCGTAAAGGATGG 60.538 57.143 4.29 4.29 41.82 3.51
392 393 1.753073 CTACCCGTCGTAAAGGATGGT 59.247 52.381 9.44 6.25 40.79 3.55
393 394 0.978907 ACCCGTCGTAAAGGATGGTT 59.021 50.000 9.44 0.00 40.79 3.67
394 395 1.066645 ACCCGTCGTAAAGGATGGTTC 60.067 52.381 9.44 0.00 40.79 3.62
395 396 1.066716 CCCGTCGTAAAGGATGGTTCA 60.067 52.381 9.44 0.00 40.79 3.18
396 397 2.419574 CCCGTCGTAAAGGATGGTTCAT 60.420 50.000 9.44 0.00 40.79 2.57
397 398 3.181473 CCCGTCGTAAAGGATGGTTCATA 60.181 47.826 9.44 0.00 40.79 2.15
398 399 4.502604 CCCGTCGTAAAGGATGGTTCATAT 60.503 45.833 9.44 0.00 40.79 1.78
399 400 4.684703 CCGTCGTAAAGGATGGTTCATATC 59.315 45.833 3.27 0.00 38.14 1.63
400 401 4.684703 CGTCGTAAAGGATGGTTCATATCC 59.315 45.833 0.00 0.00 43.59 2.59
401 402 5.607477 GTCGTAAAGGATGGTTCATATCCA 58.393 41.667 6.77 0.00 45.28 3.41
402 403 5.465724 GTCGTAAAGGATGGTTCATATCCAC 59.534 44.000 6.77 0.00 45.28 4.02
403 404 4.447724 CGTAAAGGATGGTTCATATCCACG 59.552 45.833 6.77 4.40 45.28 4.94
404 405 4.503714 AAAGGATGGTTCATATCCACGT 57.496 40.909 6.77 0.00 45.28 4.49
405 406 4.503714 AAGGATGGTTCATATCCACGTT 57.496 40.909 6.77 0.00 45.28 3.99
406 407 4.503714 AGGATGGTTCATATCCACGTTT 57.496 40.909 6.77 0.00 45.28 3.60
407 408 4.855340 AGGATGGTTCATATCCACGTTTT 58.145 39.130 6.77 0.00 45.28 2.43
408 409 5.261216 AGGATGGTTCATATCCACGTTTTT 58.739 37.500 6.77 0.00 45.28 1.94
449 450 5.574443 GCTGAAACTAAACAATGGCATCTTC 59.426 40.000 0.00 0.00 0.00 2.87
456 457 0.383231 CAATGGCATCTTCGAAGGGC 59.617 55.000 24.37 24.82 0.00 5.19
465 475 0.598680 CTTCGAAGGGCCATCTAGCG 60.599 60.000 17.70 0.00 0.00 4.26
551 566 3.119388 CGATGGAAAACCTTCATGCATGT 60.119 43.478 25.43 4.94 32.75 3.21
572 601 3.022914 GCGCCGATCGTAACCTCG 61.023 66.667 15.09 8.29 41.07 4.63
580 609 0.731417 ATCGTAACCTCGTGTCCTCG 59.269 55.000 0.00 0.00 0.00 4.63
584 613 1.078709 TAACCTCGTGTCCTCGTACG 58.921 55.000 9.53 9.53 41.38 3.67
590 641 0.384725 CGTGTCCTCGTACGTTCGTT 60.385 55.000 16.05 0.00 35.70 3.85
621 676 0.887836 CAGCTCACAGCCAAGAAGCA 60.888 55.000 0.00 0.00 43.77 3.91
704 762 3.277211 GACGCACCACCTAGACGCA 62.277 63.158 0.00 0.00 0.00 5.24
815 874 3.248446 TTCCGTCCCTTTCAGCCCG 62.248 63.158 0.00 0.00 0.00 6.13
1141 1211 2.361230 GAGGGCCGGGGTTTTCTG 60.361 66.667 2.18 0.00 0.00 3.02
1142 1212 3.938637 GAGGGCCGGGGTTTTCTGG 62.939 68.421 2.18 0.00 36.28 3.86
1152 1222 1.179174 GGTTTTCTGGGAGGTGGTGC 61.179 60.000 0.00 0.00 0.00 5.01
1203 1288 1.675641 GCAATGGTGAAGGCCGAGT 60.676 57.895 0.00 0.00 0.00 4.18
1208 1293 2.504244 GTGAAGGCCGAGTCGACG 60.504 66.667 15.64 0.00 0.00 5.12
1209 1294 2.670592 TGAAGGCCGAGTCGACGA 60.671 61.111 15.64 0.00 35.09 4.20
1210 1295 2.202453 GAAGGCCGAGTCGACGAC 60.202 66.667 20.25 20.25 35.09 4.34
1211 1296 3.996744 GAAGGCCGAGTCGACGACG 62.997 68.421 21.44 23.57 37.67 5.12
1427 1524 4.785453 GGTGCGCCTTCTCCCCTG 62.785 72.222 9.68 0.00 0.00 4.45
1431 1554 1.603739 GCGCCTTCTCCCCTGTTTT 60.604 57.895 0.00 0.00 0.00 2.43
1436 1559 2.224892 GCCTTCTCCCCTGTTTTCTCTT 60.225 50.000 0.00 0.00 0.00 2.85
1467 1608 2.288395 CCTTCTTGGTTCAATGTGTGCC 60.288 50.000 0.00 0.00 0.00 5.01
1479 1620 2.186826 GTGTGCCGTGCTGACCTTT 61.187 57.895 0.00 0.00 0.00 3.11
1787 1942 1.600638 GTCCCTCAAGGTAACCCCG 59.399 63.158 0.00 0.00 38.74 5.73
1798 1957 2.946346 TAACCCCGGCGTCTTCCAC 61.946 63.158 6.01 0.00 0.00 4.02
1822 1981 2.168106 TGCAGTTTGCTCACCAACAATT 59.832 40.909 2.48 0.00 45.31 2.32
1829 1988 2.743664 TGCTCACCAACAATTCTGATCG 59.256 45.455 0.00 0.00 0.00 3.69
1880 2044 0.392863 TGATGTGCGGCTATTGCAGT 60.393 50.000 0.00 0.00 44.21 4.40
1994 2158 3.771160 GGGAGGTCATGGACGCGT 61.771 66.667 13.85 13.85 32.65 6.01
2465 2631 9.708222 CAGTATTTATTCTTTGGTTTCGATCTG 57.292 33.333 0.00 0.00 0.00 2.90
2494 2660 5.703978 TGGTATTCTGAACAAACATGTGG 57.296 39.130 0.00 0.00 0.00 4.17
2581 2777 3.614568 AACATATACTCCCTCCGTCCT 57.385 47.619 0.00 0.00 0.00 3.85
2600 2812 6.106673 CGTCCTGTATTACTTGTCTTGGATT 58.893 40.000 0.00 0.00 0.00 3.01
2601 2813 6.594159 CGTCCTGTATTACTTGTCTTGGATTT 59.406 38.462 0.00 0.00 0.00 2.17
2602 2814 7.413000 CGTCCTGTATTACTTGTCTTGGATTTG 60.413 40.741 0.00 0.00 0.00 2.32
2603 2815 7.390718 GTCCTGTATTACTTGTCTTGGATTTGT 59.609 37.037 0.00 0.00 0.00 2.83
2604 2816 7.606456 TCCTGTATTACTTGTCTTGGATTTGTC 59.394 37.037 0.00 0.00 0.00 3.18
2605 2817 7.607991 CCTGTATTACTTGTCTTGGATTTGTCT 59.392 37.037 0.00 0.00 0.00 3.41
2606 2818 9.653287 CTGTATTACTTGTCTTGGATTTGTCTA 57.347 33.333 0.00 0.00 0.00 2.59
2607 2819 9.653287 TGTATTACTTGTCTTGGATTTGTCTAG 57.347 33.333 0.00 0.00 0.00 2.43
2608 2820 9.871238 GTATTACTTGTCTTGGATTTGTCTAGA 57.129 33.333 0.00 0.00 0.00 2.43
2611 2823 9.871238 TTACTTGTCTTGGATTTGTCTAGATAC 57.129 33.333 0.00 0.00 0.00 2.24
2612 2824 7.036220 ACTTGTCTTGGATTTGTCTAGATACG 58.964 38.462 0.00 0.00 0.00 3.06
2613 2825 5.902681 TGTCTTGGATTTGTCTAGATACGG 58.097 41.667 0.00 0.00 0.00 4.02
2614 2826 5.655090 TGTCTTGGATTTGTCTAGATACGGA 59.345 40.000 0.00 0.00 0.00 4.69
2615 2827 6.323996 TGTCTTGGATTTGTCTAGATACGGAT 59.676 38.462 0.00 0.00 0.00 4.18
2616 2828 6.642950 GTCTTGGATTTGTCTAGATACGGATG 59.357 42.308 0.00 0.00 0.00 3.51
2617 2829 6.323996 TCTTGGATTTGTCTAGATACGGATGT 59.676 38.462 0.00 0.00 0.00 3.06
2618 2830 7.504574 TCTTGGATTTGTCTAGATACGGATGTA 59.495 37.037 0.00 0.00 34.45 2.29
2619 2831 7.776618 TGGATTTGTCTAGATACGGATGTAT 57.223 36.000 0.00 0.00 43.97 2.29
2629 2841 2.945080 ACGGATGTATCTAGACCGGA 57.055 50.000 19.40 0.00 46.45 5.14
2630 2842 2.502295 ACGGATGTATCTAGACCGGAC 58.498 52.381 19.40 0.10 46.45 4.79
2635 2847 5.423015 GGATGTATCTAGACCGGACGTATA 58.577 45.833 9.46 0.00 0.00 1.47
2663 2875 9.862371 AGACAGTTTTAGTGTTAGATACATCTG 57.138 33.333 1.88 0.00 39.39 2.90
2664 2876 9.640963 GACAGTTTTAGTGTTAGATACATCTGT 57.359 33.333 1.88 0.00 39.39 3.41
2749 2964 8.046107 TCATTTTTCACCTCTTCCAATTGTTTT 58.954 29.630 4.43 0.00 0.00 2.43
2750 2965 7.841915 TTTTTCACCTCTTCCAATTGTTTTC 57.158 32.000 4.43 0.00 0.00 2.29
2756 2972 8.046107 TCACCTCTTCCAATTGTTTTCAAAAAT 58.954 29.630 4.43 0.00 43.39 1.82
2902 3118 0.676466 TTGGGACGTGATCATGCACC 60.676 55.000 15.01 16.40 35.37 5.01
3035 3251 3.369451 GCTGTAGCTTGTACAGAGAAAGC 59.631 47.826 17.47 8.18 45.69 3.51
3068 3284 6.816616 TCACCATAACTGTATCCATTACCA 57.183 37.500 0.00 0.00 0.00 3.25
3091 3307 7.148407 ACCAGTCATCGTCTTATCAACAAAATC 60.148 37.037 0.00 0.00 0.00 2.17
3180 3398 2.032178 GTGACAACTGACAGAACAAGCC 59.968 50.000 10.08 0.00 0.00 4.35
3257 3475 7.276218 ACATCACATGCGAAGATAAATTTTTGG 59.724 33.333 0.00 0.00 0.00 3.28
3259 3477 5.577945 CACATGCGAAGATAAATTTTTGGCT 59.422 36.000 0.00 0.00 0.00 4.75
3261 3479 5.384063 TGCGAAGATAAATTTTTGGCTCA 57.616 34.783 0.00 0.00 0.00 4.26
3286 3505 6.769134 ACCATATTATCGTCGGTATGATCA 57.231 37.500 0.00 0.00 33.32 2.92
3298 3519 3.997021 CGGTATGATCAAATCCACTAGCC 59.003 47.826 0.00 0.00 0.00 3.93
3320 3541 3.195698 GGCCTAACTGAAGCCGCG 61.196 66.667 0.00 0.00 36.84 6.46
3321 3542 2.434359 GCCTAACTGAAGCCGCGT 60.434 61.111 4.92 0.00 0.00 6.01
3455 3676 0.659957 GCTTCGATCCAATGTGCTCC 59.340 55.000 0.00 0.00 0.00 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 8.225603 ACGTCAATGGAGCATAAGATATTTTT 57.774 30.769 0.00 0.00 0.00 1.94
15 16 7.807977 ACGTCAATGGAGCATAAGATATTTT 57.192 32.000 0.00 0.00 0.00 1.82
16 17 7.807977 AACGTCAATGGAGCATAAGATATTT 57.192 32.000 0.00 0.00 0.00 1.40
17 18 7.807977 AAACGTCAATGGAGCATAAGATATT 57.192 32.000 0.00 0.00 0.00 1.28
18 19 7.807977 AAAACGTCAATGGAGCATAAGATAT 57.192 32.000 0.00 0.00 0.00 1.63
19 20 7.552687 AGAAAAACGTCAATGGAGCATAAGATA 59.447 33.333 0.00 0.00 0.00 1.98
20 21 6.375455 AGAAAAACGTCAATGGAGCATAAGAT 59.625 34.615 0.00 0.00 0.00 2.40
21 22 5.705441 AGAAAAACGTCAATGGAGCATAAGA 59.295 36.000 0.00 0.00 0.00 2.10
22 23 5.942872 AGAAAAACGTCAATGGAGCATAAG 58.057 37.500 0.00 0.00 0.00 1.73
23 24 5.957842 AGAAAAACGTCAATGGAGCATAA 57.042 34.783 0.00 0.00 0.00 1.90
24 25 5.957842 AAGAAAAACGTCAATGGAGCATA 57.042 34.783 0.00 0.00 0.00 3.14
25 26 4.853924 AAGAAAAACGTCAATGGAGCAT 57.146 36.364 0.00 0.00 0.00 3.79
26 27 4.647424 AAAGAAAAACGTCAATGGAGCA 57.353 36.364 0.00 0.00 0.00 4.26
27 28 5.966636 AAAAAGAAAAACGTCAATGGAGC 57.033 34.783 0.00 0.00 0.00 4.70
46 47 9.601217 TGTGCTTTTGTAGGCTAAATTTAAAAA 57.399 25.926 0.00 2.03 0.00 1.94
47 48 9.771534 ATGTGCTTTTGTAGGCTAAATTTAAAA 57.228 25.926 0.00 0.00 0.00 1.52
50 51 9.238368 ACTATGTGCTTTTGTAGGCTAAATTTA 57.762 29.630 0.00 0.00 0.00 1.40
51 52 8.122472 ACTATGTGCTTTTGTAGGCTAAATTT 57.878 30.769 0.00 0.00 0.00 1.82
52 53 7.703058 ACTATGTGCTTTTGTAGGCTAAATT 57.297 32.000 0.00 0.00 0.00 1.82
53 54 7.827236 TGTACTATGTGCTTTTGTAGGCTAAAT 59.173 33.333 0.00 0.00 0.00 1.40
54 55 7.162761 TGTACTATGTGCTTTTGTAGGCTAAA 58.837 34.615 0.00 0.00 0.00 1.85
55 56 6.703319 TGTACTATGTGCTTTTGTAGGCTAA 58.297 36.000 0.00 0.00 0.00 3.09
56 57 6.153851 TCTGTACTATGTGCTTTTGTAGGCTA 59.846 38.462 0.00 0.00 0.00 3.93
57 58 5.046591 TCTGTACTATGTGCTTTTGTAGGCT 60.047 40.000 0.00 0.00 0.00 4.58
58 59 5.063564 GTCTGTACTATGTGCTTTTGTAGGC 59.936 44.000 0.00 0.00 0.00 3.93
59 60 5.288712 CGTCTGTACTATGTGCTTTTGTAGG 59.711 44.000 0.00 0.00 0.00 3.18
60 61 5.220228 GCGTCTGTACTATGTGCTTTTGTAG 60.220 44.000 0.00 0.00 0.00 2.74
61 62 4.624024 GCGTCTGTACTATGTGCTTTTGTA 59.376 41.667 0.00 0.00 0.00 2.41
62 63 3.432252 GCGTCTGTACTATGTGCTTTTGT 59.568 43.478 0.00 0.00 0.00 2.83
63 64 3.431912 TGCGTCTGTACTATGTGCTTTTG 59.568 43.478 0.00 0.00 0.00 2.44
64 65 3.659786 TGCGTCTGTACTATGTGCTTTT 58.340 40.909 0.00 0.00 0.00 2.27
65 66 3.313012 TGCGTCTGTACTATGTGCTTT 57.687 42.857 0.00 0.00 0.00 3.51
66 67 3.313012 TTGCGTCTGTACTATGTGCTT 57.687 42.857 0.00 0.00 0.00 3.91
67 68 2.993899 GTTTGCGTCTGTACTATGTGCT 59.006 45.455 0.00 0.00 0.00 4.40
68 69 2.222508 CGTTTGCGTCTGTACTATGTGC 60.223 50.000 0.00 0.00 0.00 4.57
69 70 2.222508 GCGTTTGCGTCTGTACTATGTG 60.223 50.000 0.00 0.00 40.81 3.21
70 71 1.990563 GCGTTTGCGTCTGTACTATGT 59.009 47.619 0.00 0.00 40.81 2.29
71 72 2.696076 GCGTTTGCGTCTGTACTATG 57.304 50.000 0.00 0.00 40.81 2.23
78 79 7.994642 GCATATGTATGAGCGTTTGCGTCTG 62.995 48.000 4.29 0.00 39.04 3.51
79 80 6.071798 GCATATGTATGAGCGTTTGCGTCT 62.072 45.833 4.29 0.00 39.04 4.18
80 81 3.901485 GCATATGTATGAGCGTTTGCGTC 60.901 47.826 4.29 0.00 39.04 5.19
81 82 2.032894 GCATATGTATGAGCGTTTGCGT 60.033 45.455 4.29 0.00 39.04 5.24
82 83 2.563976 GCATATGTATGAGCGTTTGCG 58.436 47.619 4.29 0.00 39.04 4.85
83 84 2.563976 CGCATATGTATGAGCGTTTGC 58.436 47.619 4.29 0.00 44.67 3.68
90 91 3.618594 GGGTGTATGCGCATATGTATGAG 59.381 47.826 31.14 2.11 35.75 2.90
91 92 3.007398 TGGGTGTATGCGCATATGTATGA 59.993 43.478 31.14 8.09 35.75 2.15
92 93 3.333804 TGGGTGTATGCGCATATGTATG 58.666 45.455 31.14 0.00 36.78 2.39
93 94 3.599343 CTGGGTGTATGCGCATATGTAT 58.401 45.455 31.14 8.90 0.00 2.29
94 95 2.870035 GCTGGGTGTATGCGCATATGTA 60.870 50.000 31.14 18.33 0.00 2.29
95 96 1.882912 CTGGGTGTATGCGCATATGT 58.117 50.000 31.14 10.13 0.00 2.29
96 97 0.518636 GCTGGGTGTATGCGCATATG 59.481 55.000 31.14 17.55 0.00 1.78
97 98 0.606401 GGCTGGGTGTATGCGCATAT 60.606 55.000 31.14 11.35 0.00 1.78
98 99 1.227823 GGCTGGGTGTATGCGCATA 60.228 57.895 25.78 25.78 0.00 3.14
99 100 2.516930 GGCTGGGTGTATGCGCAT 60.517 61.111 28.23 28.23 0.00 4.73
100 101 4.794648 GGGCTGGGTGTATGCGCA 62.795 66.667 14.96 14.96 39.08 6.09
101 102 3.101796 TAGGGCTGGGTGTATGCGC 62.102 63.158 0.00 0.00 39.46 6.09
102 103 1.227556 GTAGGGCTGGGTGTATGCG 60.228 63.158 0.00 0.00 0.00 4.73
103 104 1.227556 CGTAGGGCTGGGTGTATGC 60.228 63.158 0.00 0.00 0.00 3.14
104 105 0.828022 TTCGTAGGGCTGGGTGTATG 59.172 55.000 0.00 0.00 0.00 2.39
105 106 0.828677 GTTCGTAGGGCTGGGTGTAT 59.171 55.000 0.00 0.00 0.00 2.29
106 107 1.597797 CGTTCGTAGGGCTGGGTGTA 61.598 60.000 0.00 0.00 0.00 2.90
107 108 2.939261 CGTTCGTAGGGCTGGGTGT 61.939 63.158 0.00 0.00 0.00 4.16
108 109 2.125673 CGTTCGTAGGGCTGGGTG 60.126 66.667 0.00 0.00 0.00 4.61
109 110 4.078516 GCGTTCGTAGGGCTGGGT 62.079 66.667 0.00 0.00 0.00 4.51
110 111 4.077184 TGCGTTCGTAGGGCTGGG 62.077 66.667 0.00 0.00 0.00 4.45
111 112 2.813908 GTGCGTTCGTAGGGCTGG 60.814 66.667 0.00 0.00 0.00 4.85
112 113 2.048597 TGTGCGTTCGTAGGGCTG 60.049 61.111 0.00 0.00 0.00 4.85
113 114 2.048503 GTGTGCGTTCGTAGGGCT 60.049 61.111 0.00 0.00 0.00 5.19
114 115 1.740296 ATGTGTGCGTTCGTAGGGC 60.740 57.895 0.00 0.00 0.00 5.19
115 116 1.966493 GCATGTGTGCGTTCGTAGGG 61.966 60.000 0.00 0.00 42.28 3.53
116 117 1.419922 GCATGTGTGCGTTCGTAGG 59.580 57.895 0.00 0.00 42.28 3.18
126 127 2.028658 AGGAGTAGAGTGTGCATGTGTG 60.029 50.000 0.00 0.00 0.00 3.82
127 128 2.251818 AGGAGTAGAGTGTGCATGTGT 58.748 47.619 0.00 0.00 0.00 3.72
128 129 4.662468 ATAGGAGTAGAGTGTGCATGTG 57.338 45.455 0.00 0.00 0.00 3.21
129 130 5.221342 GCTTATAGGAGTAGAGTGTGCATGT 60.221 44.000 0.00 0.00 0.00 3.21
130 131 5.221322 TGCTTATAGGAGTAGAGTGTGCATG 60.221 44.000 0.00 0.00 0.00 4.06
131 132 4.895889 TGCTTATAGGAGTAGAGTGTGCAT 59.104 41.667 0.00 0.00 0.00 3.96
132 133 4.098044 GTGCTTATAGGAGTAGAGTGTGCA 59.902 45.833 0.00 0.00 0.00 4.57
133 134 4.339814 AGTGCTTATAGGAGTAGAGTGTGC 59.660 45.833 0.00 0.00 0.00 4.57
134 135 6.458232 AAGTGCTTATAGGAGTAGAGTGTG 57.542 41.667 0.00 0.00 0.00 3.82
135 136 6.663953 TGAAAGTGCTTATAGGAGTAGAGTGT 59.336 38.462 0.00 0.00 0.00 3.55
136 137 7.101652 TGAAAGTGCTTATAGGAGTAGAGTG 57.898 40.000 0.00 0.00 0.00 3.51
137 138 7.616150 TCTTGAAAGTGCTTATAGGAGTAGAGT 59.384 37.037 0.00 0.00 0.00 3.24
138 139 8.001881 TCTTGAAAGTGCTTATAGGAGTAGAG 57.998 38.462 0.00 0.00 0.00 2.43
139 140 7.834681 TCTCTTGAAAGTGCTTATAGGAGTAGA 59.165 37.037 0.00 0.00 0.00 2.59
140 141 7.918562 GTCTCTTGAAAGTGCTTATAGGAGTAG 59.081 40.741 0.00 0.00 0.00 2.57
141 142 7.147880 GGTCTCTTGAAAGTGCTTATAGGAGTA 60.148 40.741 0.00 0.00 0.00 2.59
142 143 6.351456 GGTCTCTTGAAAGTGCTTATAGGAGT 60.351 42.308 0.00 0.00 0.00 3.85
143 144 6.045955 GGTCTCTTGAAAGTGCTTATAGGAG 58.954 44.000 0.00 0.00 0.00 3.69
144 145 5.394224 CGGTCTCTTGAAAGTGCTTATAGGA 60.394 44.000 0.00 0.00 0.00 2.94
145 146 4.806247 CGGTCTCTTGAAAGTGCTTATAGG 59.194 45.833 0.00 0.00 0.00 2.57
146 147 5.651530 TCGGTCTCTTGAAAGTGCTTATAG 58.348 41.667 0.00 0.00 0.00 1.31
147 148 5.651530 CTCGGTCTCTTGAAAGTGCTTATA 58.348 41.667 0.00 0.00 0.00 0.98
148 149 4.499183 CTCGGTCTCTTGAAAGTGCTTAT 58.501 43.478 0.00 0.00 0.00 1.73
149 150 3.861131 GCTCGGTCTCTTGAAAGTGCTTA 60.861 47.826 0.00 0.00 0.00 3.09
150 151 2.760374 CTCGGTCTCTTGAAAGTGCTT 58.240 47.619 0.00 0.00 0.00 3.91
151 152 1.606737 GCTCGGTCTCTTGAAAGTGCT 60.607 52.381 0.00 0.00 0.00 4.40
152 153 0.793250 GCTCGGTCTCTTGAAAGTGC 59.207 55.000 0.00 0.00 0.00 4.40
153 154 2.064762 CAGCTCGGTCTCTTGAAAGTG 58.935 52.381 0.00 0.00 0.00 3.16
154 155 1.001406 CCAGCTCGGTCTCTTGAAAGT 59.999 52.381 0.00 0.00 0.00 2.66
155 156 1.719600 CCAGCTCGGTCTCTTGAAAG 58.280 55.000 0.00 0.00 0.00 2.62
156 157 0.320771 GCCAGCTCGGTCTCTTGAAA 60.321 55.000 4.45 0.00 36.97 2.69
157 158 1.293498 GCCAGCTCGGTCTCTTGAA 59.707 57.895 4.45 0.00 36.97 2.69
158 159 1.260538 ATGCCAGCTCGGTCTCTTGA 61.261 55.000 4.45 0.00 36.97 3.02
159 160 0.461548 TATGCCAGCTCGGTCTCTTG 59.538 55.000 4.45 0.00 36.97 3.02
160 161 1.342819 GATATGCCAGCTCGGTCTCTT 59.657 52.381 4.45 0.00 36.97 2.85
161 162 0.965439 GATATGCCAGCTCGGTCTCT 59.035 55.000 4.45 0.00 36.97 3.10
162 163 0.676184 TGATATGCCAGCTCGGTCTC 59.324 55.000 4.45 0.00 36.97 3.36
163 164 1.274728 GATGATATGCCAGCTCGGTCT 59.725 52.381 4.45 0.00 36.97 3.85
164 165 1.274728 AGATGATATGCCAGCTCGGTC 59.725 52.381 4.45 0.00 36.97 4.79
165 166 1.346062 AGATGATATGCCAGCTCGGT 58.654 50.000 4.45 0.00 36.97 4.69
166 167 2.074576 CAAGATGATATGCCAGCTCGG 58.925 52.381 0.00 0.00 30.67 4.63
167 168 2.994578 CTCAAGATGATATGCCAGCTCG 59.005 50.000 0.00 0.00 30.67 5.03
168 169 4.268797 TCTCAAGATGATATGCCAGCTC 57.731 45.455 0.00 0.00 30.67 4.09
169 170 4.912317 ATCTCAAGATGATATGCCAGCT 57.088 40.909 0.00 0.00 33.74 4.24
170 171 5.961396 AAATCTCAAGATGATATGCCAGC 57.039 39.130 0.00 0.00 34.49 4.85
171 172 6.870439 TCGTAAATCTCAAGATGATATGCCAG 59.130 38.462 0.00 0.00 34.49 4.85
172 173 6.758254 TCGTAAATCTCAAGATGATATGCCA 58.242 36.000 0.00 0.00 34.49 4.92
173 174 7.386299 ACTTCGTAAATCTCAAGATGATATGCC 59.614 37.037 0.00 0.00 34.49 4.40
174 175 8.304202 ACTTCGTAAATCTCAAGATGATATGC 57.696 34.615 0.00 0.00 34.49 3.14
175 176 9.468532 TGACTTCGTAAATCTCAAGATGATATG 57.531 33.333 0.00 0.00 34.49 1.78
176 177 9.469807 GTGACTTCGTAAATCTCAAGATGATAT 57.530 33.333 0.00 0.00 34.49 1.63
177 178 8.687242 AGTGACTTCGTAAATCTCAAGATGATA 58.313 33.333 0.00 0.00 34.49 2.15
178 179 7.551585 AGTGACTTCGTAAATCTCAAGATGAT 58.448 34.615 0.00 0.00 34.49 2.45
179 180 6.925211 AGTGACTTCGTAAATCTCAAGATGA 58.075 36.000 0.00 0.00 34.49 2.92
180 181 8.864069 ATAGTGACTTCGTAAATCTCAAGATG 57.136 34.615 0.00 0.00 34.49 2.90
181 182 9.953697 GTATAGTGACTTCGTAAATCTCAAGAT 57.046 33.333 0.00 0.00 36.07 2.40
182 183 8.121086 CGTATAGTGACTTCGTAAATCTCAAGA 58.879 37.037 0.00 0.00 0.00 3.02
183 184 7.096966 GCGTATAGTGACTTCGTAAATCTCAAG 60.097 40.741 0.00 0.00 0.00 3.02
184 185 6.690098 GCGTATAGTGACTTCGTAAATCTCAA 59.310 38.462 0.00 0.00 0.00 3.02
185 186 6.197276 GCGTATAGTGACTTCGTAAATCTCA 58.803 40.000 0.00 0.00 0.00 3.27
186 187 5.336469 CGCGTATAGTGACTTCGTAAATCTC 59.664 44.000 0.00 0.00 0.00 2.75
187 188 5.203370 CGCGTATAGTGACTTCGTAAATCT 58.797 41.667 0.00 0.00 0.00 2.40
188 189 4.966366 ACGCGTATAGTGACTTCGTAAATC 59.034 41.667 11.67 0.00 0.00 2.17
189 190 4.913376 ACGCGTATAGTGACTTCGTAAAT 58.087 39.130 11.67 0.00 0.00 1.40
190 191 4.093408 AGACGCGTATAGTGACTTCGTAAA 59.907 41.667 13.97 0.00 31.74 2.01
191 192 3.618594 AGACGCGTATAGTGACTTCGTAA 59.381 43.478 13.97 0.00 31.74 3.18
192 193 3.190079 AGACGCGTATAGTGACTTCGTA 58.810 45.455 13.97 0.00 31.74 3.43
193 194 2.005451 AGACGCGTATAGTGACTTCGT 58.995 47.619 13.97 0.00 31.74 3.85
194 195 2.626892 GAGACGCGTATAGTGACTTCG 58.373 52.381 13.97 0.00 35.64 3.79
195 196 2.626892 CGAGACGCGTATAGTGACTTC 58.373 52.381 13.97 0.00 35.64 3.01
196 197 2.733820 CGAGACGCGTATAGTGACTT 57.266 50.000 13.97 0.00 35.64 3.01
221 222 1.135333 GTGGGAGGAGACGATTCAGTC 59.865 57.143 0.00 1.89 41.23 3.51
222 223 1.187087 GTGGGAGGAGACGATTCAGT 58.813 55.000 0.00 0.00 0.00 3.41
223 224 0.101399 CGTGGGAGGAGACGATTCAG 59.899 60.000 0.00 0.00 37.81 3.02
224 225 0.323087 TCGTGGGAGGAGACGATTCA 60.323 55.000 0.00 0.00 39.59 2.57
225 226 0.815734 TTCGTGGGAGGAGACGATTC 59.184 55.000 0.00 0.00 43.67 2.52
226 227 1.263356 TTTCGTGGGAGGAGACGATT 58.737 50.000 0.00 0.00 43.67 3.34
227 228 1.204941 CTTTTCGTGGGAGGAGACGAT 59.795 52.381 0.00 0.00 43.67 3.73
228 229 0.601558 CTTTTCGTGGGAGGAGACGA 59.398 55.000 0.00 0.00 42.61 4.20
229 230 1.014564 GCTTTTCGTGGGAGGAGACG 61.015 60.000 0.00 0.00 36.91 4.18
230 231 1.014564 CGCTTTTCGTGGGAGGAGAC 61.015 60.000 0.00 0.00 0.00 3.36
231 232 1.292223 CGCTTTTCGTGGGAGGAGA 59.708 57.895 0.00 0.00 0.00 3.71
232 233 1.741770 CCGCTTTTCGTGGGAGGAG 60.742 63.158 0.00 0.00 39.71 3.69
233 234 2.211410 TCCGCTTTTCGTGGGAGGA 61.211 57.895 0.00 0.00 43.71 3.71
234 235 2.033194 GTCCGCTTTTCGTGGGAGG 61.033 63.158 0.00 0.00 43.71 4.30
235 236 0.602905 AAGTCCGCTTTTCGTGGGAG 60.603 55.000 0.00 0.00 43.71 4.30
236 237 0.882927 CAAGTCCGCTTTTCGTGGGA 60.883 55.000 0.00 0.00 43.71 4.37
237 238 0.882927 TCAAGTCCGCTTTTCGTGGG 60.883 55.000 0.00 0.00 43.71 4.61
238 239 0.941542 TTCAAGTCCGCTTTTCGTGG 59.058 50.000 0.00 0.00 44.95 4.94
239 240 2.412847 GGATTCAAGTCCGCTTTTCGTG 60.413 50.000 0.00 0.00 36.19 4.35
240 241 1.804748 GGATTCAAGTCCGCTTTTCGT 59.195 47.619 0.00 0.00 36.19 3.85
241 242 2.076863 AGGATTCAAGTCCGCTTTTCG 58.923 47.619 0.00 0.00 43.27 3.46
242 243 2.162408 CCAGGATTCAAGTCCGCTTTTC 59.838 50.000 0.00 0.00 43.27 2.29
243 244 2.162681 CCAGGATTCAAGTCCGCTTTT 58.837 47.619 0.00 0.00 43.27 2.27
244 245 1.073923 ACCAGGATTCAAGTCCGCTTT 59.926 47.619 0.00 0.00 43.27 3.51
245 246 0.693049 ACCAGGATTCAAGTCCGCTT 59.307 50.000 0.00 0.00 43.27 4.68
246 247 0.036010 CACCAGGATTCAAGTCCGCT 60.036 55.000 0.00 0.00 43.27 5.52
247 248 1.026718 CCACCAGGATTCAAGTCCGC 61.027 60.000 0.00 0.00 43.27 5.54
248 249 0.392998 CCCACCAGGATTCAAGTCCG 60.393 60.000 0.00 0.00 43.27 4.79
249 250 0.698818 ACCCACCAGGATTCAAGTCC 59.301 55.000 0.00 0.00 39.89 3.85
250 251 2.162681 CAACCCACCAGGATTCAAGTC 58.837 52.381 0.00 0.00 39.89 3.01
251 252 1.203050 CCAACCCACCAGGATTCAAGT 60.203 52.381 0.00 0.00 39.89 3.16
252 253 1.549203 CCAACCCACCAGGATTCAAG 58.451 55.000 0.00 0.00 39.89 3.02
253 254 0.114168 CCCAACCCACCAGGATTCAA 59.886 55.000 0.00 0.00 39.89 2.69
254 255 1.773635 CCCAACCCACCAGGATTCA 59.226 57.895 0.00 0.00 39.89 2.57
255 256 1.000359 CCCCAACCCACCAGGATTC 60.000 63.158 0.00 0.00 39.89 2.52
256 257 0.855400 ATCCCCAACCCACCAGGATT 60.855 55.000 0.00 0.00 39.89 3.01
257 258 0.047176 TATCCCCAACCCACCAGGAT 59.953 55.000 0.00 0.00 40.43 3.24
258 259 0.178828 TTATCCCCAACCCACCAGGA 60.179 55.000 0.00 0.00 39.89 3.86
259 260 0.033503 GTTATCCCCAACCCACCAGG 60.034 60.000 0.00 0.00 43.78 4.45
260 261 0.701731 TGTTATCCCCAACCCACCAG 59.298 55.000 0.00 0.00 0.00 4.00
261 262 0.406361 GTGTTATCCCCAACCCACCA 59.594 55.000 0.00 0.00 0.00 4.17
262 263 0.702316 AGTGTTATCCCCAACCCACC 59.298 55.000 0.00 0.00 0.00 4.61
263 264 1.074889 ACAGTGTTATCCCCAACCCAC 59.925 52.381 0.00 0.00 0.00 4.61
264 265 1.353022 GACAGTGTTATCCCCAACCCA 59.647 52.381 0.00 0.00 0.00 4.51
265 266 1.340697 GGACAGTGTTATCCCCAACCC 60.341 57.143 0.00 0.00 0.00 4.11
266 267 2.124277 GGACAGTGTTATCCCCAACC 57.876 55.000 0.00 0.00 0.00 3.77
272 273 3.773119 TGGTTAGAGGGACAGTGTTATCC 59.227 47.826 0.00 0.00 0.00 2.59
273 274 5.453480 GGATGGTTAGAGGGACAGTGTTATC 60.453 48.000 0.00 0.00 0.00 1.75
274 275 4.409247 GGATGGTTAGAGGGACAGTGTTAT 59.591 45.833 0.00 0.00 0.00 1.89
275 276 3.773119 GGATGGTTAGAGGGACAGTGTTA 59.227 47.826 0.00 0.00 0.00 2.41
276 277 2.572104 GGATGGTTAGAGGGACAGTGTT 59.428 50.000 0.00 0.00 0.00 3.32
277 278 2.188817 GGATGGTTAGAGGGACAGTGT 58.811 52.381 0.00 0.00 0.00 3.55
278 279 2.187958 TGGATGGTTAGAGGGACAGTG 58.812 52.381 0.00 0.00 0.00 3.66
279 280 2.572104 GTTGGATGGTTAGAGGGACAGT 59.428 50.000 0.00 0.00 0.00 3.55
280 281 2.092914 GGTTGGATGGTTAGAGGGACAG 60.093 54.545 0.00 0.00 0.00 3.51
281 282 1.913419 GGTTGGATGGTTAGAGGGACA 59.087 52.381 0.00 0.00 0.00 4.02
282 283 1.913419 TGGTTGGATGGTTAGAGGGAC 59.087 52.381 0.00 0.00 0.00 4.46
283 284 1.913419 GTGGTTGGATGGTTAGAGGGA 59.087 52.381 0.00 0.00 0.00 4.20
284 285 1.633432 TGTGGTTGGATGGTTAGAGGG 59.367 52.381 0.00 0.00 0.00 4.30
285 286 2.356125 CCTGTGGTTGGATGGTTAGAGG 60.356 54.545 0.00 0.00 0.00 3.69
286 287 2.305927 ACCTGTGGTTGGATGGTTAGAG 59.694 50.000 0.00 0.00 27.29 2.43
287 288 2.344592 ACCTGTGGTTGGATGGTTAGA 58.655 47.619 0.00 0.00 27.29 2.10
288 289 2.879103 ACCTGTGGTTGGATGGTTAG 57.121 50.000 0.00 0.00 27.29 2.34
301 302 0.039256 CCATTGCGAACCAACCTGTG 60.039 55.000 0.00 0.00 35.99 3.66
302 303 1.178534 CCCATTGCGAACCAACCTGT 61.179 55.000 0.00 0.00 35.99 4.00
303 304 1.178534 ACCCATTGCGAACCAACCTG 61.179 55.000 0.00 0.00 35.99 4.00
304 305 0.893727 GACCCATTGCGAACCAACCT 60.894 55.000 0.00 0.00 35.99 3.50
305 306 1.175983 TGACCCATTGCGAACCAACC 61.176 55.000 0.00 0.00 35.99 3.77
306 307 0.039527 GTGACCCATTGCGAACCAAC 60.040 55.000 0.00 0.00 35.99 3.77
307 308 0.179004 AGTGACCCATTGCGAACCAA 60.179 50.000 0.00 0.00 37.94 3.67
308 309 0.179004 AAGTGACCCATTGCGAACCA 60.179 50.000 0.00 0.00 0.00 3.67
309 310 1.816074 TAAGTGACCCATTGCGAACC 58.184 50.000 0.00 0.00 0.00 3.62
310 311 2.812011 AGTTAAGTGACCCATTGCGAAC 59.188 45.455 0.00 0.00 0.00 3.95
311 312 3.134574 AGTTAAGTGACCCATTGCGAA 57.865 42.857 0.00 0.00 0.00 4.70
312 313 2.851263 AGTTAAGTGACCCATTGCGA 57.149 45.000 0.00 0.00 0.00 5.10
313 314 6.092944 TGTTTATAGTTAAGTGACCCATTGCG 59.907 38.462 0.00 0.00 0.00 4.85
314 315 7.385778 TGTTTATAGTTAAGTGACCCATTGC 57.614 36.000 0.00 0.00 0.00 3.56
318 319 9.661563 CTGTTATGTTTATAGTTAAGTGACCCA 57.338 33.333 0.00 0.00 0.00 4.51
319 320 9.106070 CCTGTTATGTTTATAGTTAAGTGACCC 57.894 37.037 0.00 0.00 0.00 4.46
320 321 8.610035 GCCTGTTATGTTTATAGTTAAGTGACC 58.390 37.037 0.00 0.00 0.00 4.02
321 322 9.158233 TGCCTGTTATGTTTATAGTTAAGTGAC 57.842 33.333 0.00 0.00 0.00 3.67
322 323 9.158233 GTGCCTGTTATGTTTATAGTTAAGTGA 57.842 33.333 0.00 0.00 0.00 3.41
323 324 8.114290 CGTGCCTGTTATGTTTATAGTTAAGTG 58.886 37.037 0.00 0.00 0.00 3.16
324 325 7.201582 GCGTGCCTGTTATGTTTATAGTTAAGT 60.202 37.037 0.00 0.00 0.00 2.24
325 326 7.011109 AGCGTGCCTGTTATGTTTATAGTTAAG 59.989 37.037 0.00 0.00 0.00 1.85
326 327 6.819649 AGCGTGCCTGTTATGTTTATAGTTAA 59.180 34.615 0.00 0.00 0.00 2.01
327 328 6.342906 AGCGTGCCTGTTATGTTTATAGTTA 58.657 36.000 0.00 0.00 0.00 2.24
328 329 5.183228 AGCGTGCCTGTTATGTTTATAGTT 58.817 37.500 0.00 0.00 0.00 2.24
329 330 4.766375 AGCGTGCCTGTTATGTTTATAGT 58.234 39.130 0.00 0.00 0.00 2.12
330 331 5.501715 CAAGCGTGCCTGTTATGTTTATAG 58.498 41.667 0.00 0.00 0.00 1.31
331 332 4.201871 GCAAGCGTGCCTGTTATGTTTATA 60.202 41.667 14.16 0.00 45.68 0.98
332 333 3.427503 GCAAGCGTGCCTGTTATGTTTAT 60.428 43.478 14.16 0.00 45.68 1.40
333 334 2.095466 GCAAGCGTGCCTGTTATGTTTA 60.095 45.455 14.16 0.00 45.68 2.01
334 335 1.335872 GCAAGCGTGCCTGTTATGTTT 60.336 47.619 14.16 0.00 45.68 2.83
335 336 0.240945 GCAAGCGTGCCTGTTATGTT 59.759 50.000 14.16 0.00 45.68 2.71
336 337 1.875963 GCAAGCGTGCCTGTTATGT 59.124 52.632 14.16 0.00 45.68 2.29
337 338 4.771684 GCAAGCGTGCCTGTTATG 57.228 55.556 14.16 0.00 45.68 1.90
348 349 1.577328 AACATGAGGGAACGCAAGCG 61.577 55.000 13.50 13.50 45.56 4.68
349 350 0.598065 AAACATGAGGGAACGCAAGC 59.402 50.000 0.00 0.00 45.56 4.01
350 351 3.670627 GCTTAAACATGAGGGAACGCAAG 60.671 47.826 0.00 0.00 45.56 4.01
351 352 2.227865 GCTTAAACATGAGGGAACGCAA 59.772 45.455 0.00 0.00 45.56 4.85
352 353 1.810151 GCTTAAACATGAGGGAACGCA 59.190 47.619 0.00 0.00 46.81 5.24
353 354 2.084546 AGCTTAAACATGAGGGAACGC 58.915 47.619 0.00 0.00 0.00 4.84
354 355 3.621715 GGTAGCTTAAACATGAGGGAACG 59.378 47.826 0.00 0.00 0.00 3.95
355 356 3.945921 GGGTAGCTTAAACATGAGGGAAC 59.054 47.826 0.00 0.00 0.00 3.62
356 357 3.370103 CGGGTAGCTTAAACATGAGGGAA 60.370 47.826 0.00 0.00 0.00 3.97
357 358 2.169769 CGGGTAGCTTAAACATGAGGGA 59.830 50.000 0.00 0.00 0.00 4.20
358 359 2.093128 ACGGGTAGCTTAAACATGAGGG 60.093 50.000 0.00 0.00 0.00 4.30
359 360 3.195661 GACGGGTAGCTTAAACATGAGG 58.804 50.000 0.00 0.00 0.00 3.86
360 361 2.858344 CGACGGGTAGCTTAAACATGAG 59.142 50.000 0.00 0.00 0.00 2.90
361 362 2.231964 ACGACGGGTAGCTTAAACATGA 59.768 45.455 0.00 0.00 0.00 3.07
362 363 2.613691 ACGACGGGTAGCTTAAACATG 58.386 47.619 0.00 0.00 0.00 3.21
363 364 4.454728 TTACGACGGGTAGCTTAAACAT 57.545 40.909 0.00 0.00 31.46 2.71
364 365 3.932545 TTACGACGGGTAGCTTAAACA 57.067 42.857 0.00 0.00 31.46 2.83
365 366 3.614176 CCTTTACGACGGGTAGCTTAAAC 59.386 47.826 0.00 0.00 31.46 2.01
366 367 3.509575 TCCTTTACGACGGGTAGCTTAAA 59.490 43.478 0.00 0.00 31.46 1.52
367 368 3.088532 TCCTTTACGACGGGTAGCTTAA 58.911 45.455 0.00 0.00 31.46 1.85
368 369 2.722094 TCCTTTACGACGGGTAGCTTA 58.278 47.619 0.00 0.00 31.46 3.09
369 370 1.549203 TCCTTTACGACGGGTAGCTT 58.451 50.000 0.00 0.00 31.46 3.74
370 371 1.407979 CATCCTTTACGACGGGTAGCT 59.592 52.381 0.00 0.00 31.46 3.32
371 372 1.537562 CCATCCTTTACGACGGGTAGC 60.538 57.143 0.00 0.00 31.46 3.58
372 373 1.753073 ACCATCCTTTACGACGGGTAG 59.247 52.381 0.00 0.00 31.46 3.18
373 374 1.851304 ACCATCCTTTACGACGGGTA 58.149 50.000 0.00 0.00 0.00 3.69
374 375 0.978907 AACCATCCTTTACGACGGGT 59.021 50.000 0.00 0.00 0.00 5.28
375 376 1.066716 TGAACCATCCTTTACGACGGG 60.067 52.381 0.00 0.00 0.00 5.28
376 377 2.373540 TGAACCATCCTTTACGACGG 57.626 50.000 0.00 0.00 0.00 4.79
377 378 4.684703 GGATATGAACCATCCTTTACGACG 59.315 45.833 0.00 0.00 39.17 5.12
378 379 5.465724 GTGGATATGAACCATCCTTTACGAC 59.534 44.000 0.00 0.00 42.21 4.34
379 380 5.607477 GTGGATATGAACCATCCTTTACGA 58.393 41.667 0.00 0.00 42.21 3.43
380 381 4.447724 CGTGGATATGAACCATCCTTTACG 59.552 45.833 3.24 1.64 42.21 3.18
381 382 5.365619 ACGTGGATATGAACCATCCTTTAC 58.634 41.667 0.00 0.00 42.21 2.01
382 383 5.623956 ACGTGGATATGAACCATCCTTTA 57.376 39.130 0.00 0.00 42.21 1.85
383 384 4.503714 ACGTGGATATGAACCATCCTTT 57.496 40.909 0.00 0.00 42.21 3.11
384 385 4.503714 AACGTGGATATGAACCATCCTT 57.496 40.909 0.00 0.00 42.21 3.36
385 386 4.503714 AAACGTGGATATGAACCATCCT 57.496 40.909 0.00 0.00 42.21 3.24
386 387 5.576447 AAAAACGTGGATATGAACCATCC 57.424 39.130 0.00 0.00 42.08 3.51
408 409 6.263617 AGTTTCAGCCTATAAACGTGGAAAAA 59.736 34.615 0.00 0.00 39.90 1.94
409 410 5.766174 AGTTTCAGCCTATAAACGTGGAAAA 59.234 36.000 0.00 0.00 39.90 2.29
410 411 5.310451 AGTTTCAGCCTATAAACGTGGAAA 58.690 37.500 0.00 0.00 39.90 3.13
411 412 4.901868 AGTTTCAGCCTATAAACGTGGAA 58.098 39.130 0.00 0.00 39.90 3.53
449 450 0.876342 GAACGCTAGATGGCCCTTCG 60.876 60.000 0.00 1.15 0.00 3.79
465 475 4.142556 GGGATCACGCTAGCTATCTAGAAC 60.143 50.000 13.93 0.70 43.95 3.01
472 482 2.294449 TGAGGGATCACGCTAGCTAT 57.706 50.000 13.93 3.41 39.38 2.97
474 484 0.461961 GTTGAGGGATCACGCTAGCT 59.538 55.000 13.93 0.00 39.38 3.32
475 485 0.530870 GGTTGAGGGATCACGCTAGC 60.531 60.000 4.06 4.06 39.38 3.42
476 486 1.115467 AGGTTGAGGGATCACGCTAG 58.885 55.000 0.00 0.00 39.38 3.42
551 566 1.590525 GGTTACGATCGGCGCATGA 60.591 57.895 20.98 6.93 46.04 3.07
559 588 0.731417 AGGACACGAGGTTACGATCG 59.269 55.000 14.88 14.88 44.36 3.69
561 590 0.731417 CGAGGACACGAGGTTACGAT 59.269 55.000 0.00 0.00 37.03 3.73
572 601 1.321940 GAACGAACGTACGAGGACAC 58.678 55.000 24.41 5.43 37.03 3.67
580 609 0.094730 GCAGCCATGAACGAACGTAC 59.905 55.000 0.00 0.00 0.00 3.67
584 613 2.480555 CGGCAGCCATGAACGAAC 59.519 61.111 13.30 0.00 32.22 3.95
635 690 0.463295 ACCTCTCATCTGCATTGCGG 60.463 55.000 11.39 11.39 36.06 5.69
636 691 0.935898 GACCTCTCATCTGCATTGCG 59.064 55.000 3.84 0.00 0.00 4.85
690 748 2.126071 CCGTGCGTCTAGGTGGTG 60.126 66.667 0.00 0.00 0.00 4.17
691 749 4.065281 GCCGTGCGTCTAGGTGGT 62.065 66.667 0.00 0.00 0.00 4.16
692 750 4.814294 GGCCGTGCGTCTAGGTGG 62.814 72.222 0.00 0.00 0.00 4.61
704 762 4.814294 GGCTCGTCGAATGGCCGT 62.814 66.667 8.09 0.00 35.08 5.68
726 784 1.262640 ATATATCCCCGCGACCACCC 61.263 60.000 8.23 0.00 0.00 4.61
781 840 3.928618 GAAGGGTCAAAAGCGCGCG 62.929 63.158 28.44 28.44 0.00 6.86
871 935 2.764128 GGATGAGGAGGACGGCCA 60.764 66.667 11.69 0.00 36.29 5.36
987 1052 2.288395 CGACCAAGTACGTTTGTAGGGT 60.288 50.000 0.00 0.00 34.90 4.34
1130 1200 1.303317 CACCTCCCAGAAAACCCCG 60.303 63.158 0.00 0.00 0.00 5.73
1134 1204 0.467290 TGCACCACCTCCCAGAAAAC 60.467 55.000 0.00 0.00 0.00 2.43
1141 1211 4.767255 CTCGCTGCACCACCTCCC 62.767 72.222 0.00 0.00 0.00 4.30
1165 1235 0.032678 CGTCATCATTCTCCTCCCCG 59.967 60.000 0.00 0.00 0.00 5.73
1167 1237 0.250081 GCCGTCATCATTCTCCTCCC 60.250 60.000 0.00 0.00 0.00 4.30
1175 1260 2.127271 TCACCATTGCCGTCATCATT 57.873 45.000 0.00 0.00 0.00 2.57
1423 1520 3.329225 AGGAAGGAGAAGAGAAAACAGGG 59.671 47.826 0.00 0.00 0.00 4.45
1424 1521 4.564613 GGAGGAAGGAGAAGAGAAAACAGG 60.565 50.000 0.00 0.00 0.00 4.00
1427 1524 4.901197 AGGAGGAAGGAGAAGAGAAAAC 57.099 45.455 0.00 0.00 0.00 2.43
1431 1554 4.093011 CAAGAAGGAGGAAGGAGAAGAGA 58.907 47.826 0.00 0.00 0.00 3.10
1436 1559 2.723530 ACCAAGAAGGAGGAAGGAGA 57.276 50.000 0.00 0.00 41.22 3.71
1467 1608 1.082756 GAACGCAAAGGTCAGCACG 60.083 57.895 0.00 0.00 36.33 5.34
1479 1620 2.049156 CCTCTCTGCACGAACGCA 60.049 61.111 0.00 0.00 40.32 5.24
1644 1799 2.829043 TTCTTGATGCCGACCGTCCG 62.829 60.000 0.00 0.00 0.00 4.79
1769 1924 1.600638 CGGGGTTACCTTGAGGGAC 59.399 63.158 0.00 0.12 40.27 4.46
1787 1942 1.166531 ACTGCAAAGTGGAAGACGCC 61.167 55.000 0.00 0.00 0.00 5.68
1822 1981 8.396272 TCAGTATTCAGTATTGATCGATCAGA 57.604 34.615 25.95 17.33 38.19 3.27
1856 2020 2.009051 CAATAGCCGCACATCACAGAA 58.991 47.619 0.00 0.00 0.00 3.02
1880 2044 0.888736 CACAGCACCCATTCGTCCAA 60.889 55.000 0.00 0.00 0.00 3.53
2014 2178 1.300931 GTGCGTCTGGAAGCTGTCA 60.301 57.895 9.55 0.00 36.75 3.58
2317 2481 9.753674 TCCAATAATTTACACCAGATCTTTCTT 57.246 29.630 0.00 0.00 0.00 2.52
2513 2687 4.649218 ACAAGTTTGGTGTTTAGGCTTGAT 59.351 37.500 8.15 0.00 36.38 2.57
2519 2693 6.094881 TCAGAAGAACAAGTTTGGTGTTTAGG 59.905 38.462 0.00 0.00 39.29 2.69
2581 2777 9.653287 CTAGACAAATCCAAGACAAGTAATACA 57.347 33.333 0.00 0.00 0.00 2.29
2608 2820 4.260170 GTCCGGTCTAGATACATCCGTAT 58.740 47.826 15.27 0.00 41.16 3.06
2609 2821 3.668447 GTCCGGTCTAGATACATCCGTA 58.332 50.000 15.27 0.00 39.62 4.02
2610 2822 2.502295 GTCCGGTCTAGATACATCCGT 58.498 52.381 15.27 0.00 39.62 4.69
2611 2823 1.463831 CGTCCGGTCTAGATACATCCG 59.536 57.143 10.89 10.89 40.72 4.18
2612 2824 2.502295 ACGTCCGGTCTAGATACATCC 58.498 52.381 0.00 0.00 0.00 3.51
2613 2825 8.140628 TCTATATACGTCCGGTCTAGATACATC 58.859 40.741 0.00 0.00 0.00 3.06
2614 2826 7.925483 GTCTATATACGTCCGGTCTAGATACAT 59.075 40.741 0.00 0.00 0.00 2.29
2615 2827 7.093771 TGTCTATATACGTCCGGTCTAGATACA 60.094 40.741 0.00 0.00 0.00 2.29
2616 2828 7.261325 TGTCTATATACGTCCGGTCTAGATAC 58.739 42.308 0.00 0.00 0.00 2.24
2617 2829 7.123397 ACTGTCTATATACGTCCGGTCTAGATA 59.877 40.741 0.00 0.00 0.00 1.98
2618 2830 6.070881 ACTGTCTATATACGTCCGGTCTAGAT 60.071 42.308 0.00 0.00 0.00 1.98
2619 2831 5.244851 ACTGTCTATATACGTCCGGTCTAGA 59.755 44.000 0.00 0.00 0.00 2.43
2620 2832 5.477510 ACTGTCTATATACGTCCGGTCTAG 58.522 45.833 0.00 0.00 0.00 2.43
2621 2833 5.474578 ACTGTCTATATACGTCCGGTCTA 57.525 43.478 0.00 0.00 0.00 2.59
2622 2834 4.348863 ACTGTCTATATACGTCCGGTCT 57.651 45.455 0.00 0.00 0.00 3.85
2623 2835 5.429957 AAACTGTCTATATACGTCCGGTC 57.570 43.478 0.00 0.00 0.00 4.79
2624 2836 5.841957 AAAACTGTCTATATACGTCCGGT 57.158 39.130 0.00 0.00 0.00 5.28
2625 2837 6.854892 CACTAAAACTGTCTATATACGTCCGG 59.145 42.308 0.00 0.00 0.00 5.14
2626 2838 7.412853 ACACTAAAACTGTCTATATACGTCCG 58.587 38.462 0.00 0.00 0.00 4.79
2663 2875 8.601476 CGTCCCAAATTACTTGTTTCTAGATAC 58.399 37.037 6.40 6.40 32.65 2.24
2664 2876 7.767198 CCGTCCCAAATTACTTGTTTCTAGATA 59.233 37.037 0.00 0.00 32.65 1.98
2666 2878 5.935789 CCGTCCCAAATTACTTGTTTCTAGA 59.064 40.000 0.00 0.00 32.65 2.43
2667 2879 5.935789 TCCGTCCCAAATTACTTGTTTCTAG 59.064 40.000 0.00 0.00 32.65 2.43
2668 2880 5.867330 TCCGTCCCAAATTACTTGTTTCTA 58.133 37.500 0.00 0.00 32.65 2.10
2670 2882 4.082949 CCTCCGTCCCAAATTACTTGTTTC 60.083 45.833 0.00 0.00 32.65 2.78
2671 2883 3.824443 CCTCCGTCCCAAATTACTTGTTT 59.176 43.478 0.00 0.00 32.65 2.83
2672 2884 3.181437 ACCTCCGTCCCAAATTACTTGTT 60.181 43.478 0.00 0.00 32.65 2.83
2676 2891 6.758806 ATATTACCTCCGTCCCAAATTACT 57.241 37.500 0.00 0.00 0.00 2.24
2756 2972 9.621629 ACCAAATTCGGATAAACACTGAATATA 57.378 29.630 0.00 0.00 40.88 0.86
2762 2978 6.904498 TGTAACCAAATTCGGATAAACACTG 58.096 36.000 0.00 0.00 0.00 3.66
2763 2979 6.713450 ACTGTAACCAAATTCGGATAAACACT 59.287 34.615 0.00 0.00 0.00 3.55
2856 3072 1.433879 GATAGCTGCGTGGTCGACT 59.566 57.895 16.46 0.00 39.71 4.18
2902 3118 5.114081 TGACTCATGATGCAGACTAACATG 58.886 41.667 0.00 0.00 39.40 3.21
3035 3251 7.807907 GGATACAGTTATGGTGAAAACAACTTG 59.192 37.037 0.00 0.00 0.00 3.16
3068 3284 9.653287 TTAGATTTTGTTGATAAGACGATGACT 57.347 29.630 0.00 0.00 0.00 3.41
3091 3307 3.983344 GGTGTTGATGCAAGTTGCTTTAG 59.017 43.478 27.17 0.00 45.31 1.85
3257 3475 4.995124 ACCGACGATAATATGGTATGAGC 58.005 43.478 0.00 0.00 0.00 4.26
3261 3479 8.459911 TGATCATACCGACGATAATATGGTAT 57.540 34.615 0.00 0.00 44.57 2.73
3298 3519 1.471676 CGGCTTCAGTTAGGCCTAGTG 60.472 57.143 13.36 14.46 43.29 2.74
3318 3539 5.493735 GTGTTATTTTCTCTGCTATCACGC 58.506 41.667 0.00 0.00 0.00 5.34
3320 3541 8.604890 GTTAGGTGTTATTTTCTCTGCTATCAC 58.395 37.037 0.00 0.00 0.00 3.06
3321 3542 8.540388 AGTTAGGTGTTATTTTCTCTGCTATCA 58.460 33.333 0.00 0.00 0.00 2.15
3455 3676 4.806247 GCACACTAAATAGTCCAGCTACAG 59.194 45.833 0.00 0.00 33.46 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.