Multiple sequence alignment - TraesCS3D01G332500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G332500 chr3D 100.000 3844 0 0 1 3844 444715675 444711832 0.000000e+00 7099.0
1 TraesCS3D01G332500 chr3D 91.630 227 19 0 1 227 550711695 550711469 8.020000e-82 315.0
2 TraesCS3D01G332500 chr3B 86.524 1165 84 39 639 1760 582754115 582752981 0.000000e+00 1214.0
3 TraesCS3D01G332500 chr3B 88.312 462 29 13 2088 2543 582752468 582752026 7.310000e-147 531.0
4 TraesCS3D01G332500 chr3B 90.606 330 16 8 2963 3285 582751717 582751396 1.280000e-114 424.0
5 TraesCS3D01G332500 chr3B 84.300 293 9 4 1819 2074 582752962 582752670 6.380000e-63 252.0
6 TraesCS3D01G332500 chr3B 92.000 50 2 2 2570 2618 299786665 299786617 6.890000e-08 69.4
7 TraesCS3D01G332500 chr3B 91.667 48 4 0 2568 2615 727790707 727790660 2.480000e-07 67.6
8 TraesCS3D01G332500 chr3B 90.566 53 1 3 2558 2609 746354801 746354752 2.480000e-07 67.6
9 TraesCS3D01G332500 chr3A 87.911 761 61 17 639 1380 585568700 585567952 0.000000e+00 867.0
10 TraesCS3D01G332500 chr3A 84.022 920 64 26 1815 2682 585567417 585566529 0.000000e+00 808.0
11 TraesCS3D01G332500 chr3A 88.152 633 50 12 2723 3335 585565124 585564497 0.000000e+00 730.0
12 TraesCS3D01G332500 chr3A 87.339 466 28 19 1378 1815 585567929 585567467 4.430000e-139 505.0
13 TraesCS3D01G332500 chr3A 84.983 293 26 10 293 577 585569076 585568794 8.130000e-72 281.0
14 TraesCS3D01G332500 chr3A 97.561 41 1 0 2569 2609 80090182 80090142 1.920000e-08 71.3
15 TraesCS3D01G332500 chr3A 100.000 37 0 0 2670 2706 585565158 585565122 6.890000e-08 69.4
16 TraesCS3D01G332500 chr1A 87.121 528 38 12 3343 3843 546583009 546583533 4.310000e-159 571.0
17 TraesCS3D01G332500 chr7D 85.742 512 44 8 3362 3844 568360902 568360391 7.360000e-142 514.0
18 TraesCS3D01G332500 chr7D 96.014 276 11 0 1 276 51454851 51454576 2.110000e-122 449.0
19 TraesCS3D01G332500 chr7D 95.833 48 2 0 2569 2616 592075582 592075629 1.140000e-10 78.7
20 TraesCS3D01G332500 chr2B 85.150 532 45 11 3343 3844 68237145 68236618 7.360000e-142 514.0
21 TraesCS3D01G332500 chr4B 86.842 456 40 7 3342 3778 42744885 42745339 3.450000e-135 492.0
22 TraesCS3D01G332500 chr7B 83.430 519 54 15 3344 3832 659631902 659632418 1.630000e-123 453.0
23 TraesCS3D01G332500 chr7B 95.833 48 2 0 2569 2616 670286332 670286285 1.140000e-10 78.7
24 TraesCS3D01G332500 chr5B 82.772 534 58 16 3341 3844 599512502 599513031 2.720000e-121 446.0
25 TraesCS3D01G332500 chrUn 82.975 511 57 10 3342 3824 413924454 413924962 5.900000e-118 435.0
26 TraesCS3D01G332500 chr5D 93.796 274 17 0 1 274 43177571 43177298 2.760000e-111 412.0
27 TraesCS3D01G332500 chr5D 95.652 46 1 1 2565 2610 534007441 534007397 5.330000e-09 73.1
28 TraesCS3D01G332500 chr1B 82.192 511 61 10 3342 3824 55956746 55957254 2.760000e-111 412.0
29 TraesCS3D01G332500 chr1B 87.346 324 40 1 3342 3665 55945493 55945815 1.690000e-98 370.0
30 TraesCS3D01G332500 chr6D 85.145 276 40 1 1 276 441664901 441665175 8.130000e-72 281.0
31 TraesCS3D01G332500 chr4A 83.333 246 38 2 1 246 471711485 471711727 1.390000e-54 224.0
32 TraesCS3D01G332500 chr6B 95.833 48 1 1 2567 2613 437482967 437482920 4.120000e-10 76.8
33 TraesCS3D01G332500 chr7A 97.561 41 1 0 2569 2609 501064792 501064832 1.920000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G332500 chr3D 444711832 444715675 3843 True 7099.00 7099 100.0000 1 3844 1 chr3D.!!$R1 3843
1 TraesCS3D01G332500 chr3B 582751396 582754115 2719 True 605.25 1214 87.4355 639 3285 4 chr3B.!!$R4 2646
2 TraesCS3D01G332500 chr3A 585564497 585569076 4579 True 543.40 867 88.7345 293 3335 6 chr3A.!!$R2 3042
3 TraesCS3D01G332500 chr1A 546583009 546583533 524 False 571.00 571 87.1210 3343 3843 1 chr1A.!!$F1 500
4 TraesCS3D01G332500 chr7D 568360391 568360902 511 True 514.00 514 85.7420 3362 3844 1 chr7D.!!$R2 482
5 TraesCS3D01G332500 chr2B 68236618 68237145 527 True 514.00 514 85.1500 3343 3844 1 chr2B.!!$R1 501
6 TraesCS3D01G332500 chr7B 659631902 659632418 516 False 453.00 453 83.4300 3344 3832 1 chr7B.!!$F1 488
7 TraesCS3D01G332500 chr5B 599512502 599513031 529 False 446.00 446 82.7720 3341 3844 1 chr5B.!!$F1 503
8 TraesCS3D01G332500 chrUn 413924454 413924962 508 False 435.00 435 82.9750 3342 3824 1 chrUn.!!$F1 482
9 TraesCS3D01G332500 chr1B 55956746 55957254 508 False 412.00 412 82.1920 3342 3824 1 chr1B.!!$F2 482

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
407 412 0.026803 GATTCAGTGGATTCGTGCGC 59.973 55.0 0.00 0.0 0.00 6.09 F
585 591 0.035317 AAATGCACGACAGGAGCAGA 59.965 50.0 0.00 0.0 42.14 4.26 F
2478 2938 0.102481 GATAGCGCTTGAAGTCCGGA 59.898 55.0 18.68 0.0 0.00 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1702 1863 0.178924 AAGGGAACAGGCAAGCCATT 60.179 50.000 14.4 7.09 38.92 3.16 R
2482 2942 0.034337 GGACTCGCCACCAACAAGTA 59.966 55.000 0.0 0.00 36.34 2.24 R
3430 5319 3.518303 ACTATCTTTACTTCCAGGGCGTT 59.482 43.478 0.0 0.00 0.00 4.84 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.731348 GTCGCGGATCCTGATCGC 60.731 66.667 10.75 6.71 38.69 4.58
18 19 3.978491 TCGCGGATCCTGATCGCC 61.978 66.667 10.75 3.34 38.69 5.54
22 23 3.620785 GGATCCTGATCGCCCGCT 61.621 66.667 3.84 0.00 38.69 5.52
23 24 2.048690 GATCCTGATCGCCCGCTC 60.049 66.667 0.00 0.00 0.00 5.03
24 25 3.581687 GATCCTGATCGCCCGCTCC 62.582 68.421 0.00 0.00 0.00 4.70
26 27 4.899239 CCTGATCGCCCGCTCCAC 62.899 72.222 0.00 0.00 0.00 4.02
27 28 4.899239 CTGATCGCCCGCTCCACC 62.899 72.222 0.00 0.00 0.00 4.61
34 35 4.410400 CCCGCTCCACCCAACTCC 62.410 72.222 0.00 0.00 0.00 3.85
35 36 4.760047 CCGCTCCACCCAACTCCG 62.760 72.222 0.00 0.00 0.00 4.63
36 37 3.691342 CGCTCCACCCAACTCCGA 61.691 66.667 0.00 0.00 0.00 4.55
37 38 2.266055 GCTCCACCCAACTCCGAG 59.734 66.667 0.00 0.00 0.00 4.63
38 39 2.266055 CTCCACCCAACTCCGAGC 59.734 66.667 0.00 0.00 0.00 5.03
39 40 3.316573 CTCCACCCAACTCCGAGCC 62.317 68.421 0.00 0.00 0.00 4.70
40 41 4.410400 CCACCCAACTCCGAGCCC 62.410 72.222 0.00 0.00 0.00 5.19
41 42 4.410400 CACCCAACTCCGAGCCCC 62.410 72.222 0.00 0.00 0.00 5.80
42 43 4.974438 ACCCAACTCCGAGCCCCA 62.974 66.667 0.00 0.00 0.00 4.96
43 44 4.101448 CCCAACTCCGAGCCCCAG 62.101 72.222 0.00 0.00 0.00 4.45
44 45 3.322466 CCAACTCCGAGCCCCAGT 61.322 66.667 0.00 0.00 0.00 4.00
45 46 2.266055 CAACTCCGAGCCCCAGTC 59.734 66.667 0.00 0.00 0.00 3.51
46 47 2.203788 AACTCCGAGCCCCAGTCA 60.204 61.111 0.00 0.00 0.00 3.41
47 48 2.584391 AACTCCGAGCCCCAGTCAC 61.584 63.158 0.00 0.00 0.00 3.67
48 49 3.775654 CTCCGAGCCCCAGTCACC 61.776 72.222 0.00 0.00 0.00 4.02
49 50 4.631740 TCCGAGCCCCAGTCACCA 62.632 66.667 0.00 0.00 0.00 4.17
50 51 3.402681 CCGAGCCCCAGTCACCAT 61.403 66.667 0.00 0.00 0.00 3.55
51 52 2.124983 CGAGCCCCAGTCACCATG 60.125 66.667 0.00 0.00 0.00 3.66
52 53 2.659063 CGAGCCCCAGTCACCATGA 61.659 63.158 0.00 0.00 0.00 3.07
53 54 1.222936 GAGCCCCAGTCACCATGAG 59.777 63.158 0.00 0.00 0.00 2.90
54 55 2.439156 GCCCCAGTCACCATGAGC 60.439 66.667 0.00 0.00 0.00 4.26
55 56 3.080641 CCCCAGTCACCATGAGCA 58.919 61.111 0.00 0.00 0.00 4.26
56 57 1.377725 CCCCAGTCACCATGAGCAC 60.378 63.158 0.00 0.00 0.00 4.40
57 58 1.681666 CCCAGTCACCATGAGCACT 59.318 57.895 0.00 0.00 0.00 4.40
58 59 0.392193 CCCAGTCACCATGAGCACTC 60.392 60.000 0.00 0.00 0.00 3.51
59 60 0.392193 CCAGTCACCATGAGCACTCC 60.392 60.000 0.00 0.00 0.00 3.85
60 61 0.392193 CAGTCACCATGAGCACTCCC 60.392 60.000 0.00 0.00 0.00 4.30
61 62 0.546267 AGTCACCATGAGCACTCCCT 60.546 55.000 0.00 0.00 0.00 4.20
62 63 0.392193 GTCACCATGAGCACTCCCTG 60.392 60.000 0.00 0.00 0.00 4.45
70 71 2.743928 GCACTCCCTGCGGAACTG 60.744 66.667 0.00 0.00 37.86 3.16
71 72 2.046892 CACTCCCTGCGGAACTGG 60.047 66.667 0.00 0.00 37.86 4.00
72 73 2.526873 ACTCCCTGCGGAACTGGT 60.527 61.111 0.00 0.00 37.86 4.00
73 74 2.046892 CTCCCTGCGGAACTGGTG 60.047 66.667 0.00 0.00 37.86 4.17
74 75 2.525629 TCCCTGCGGAACTGGTGA 60.526 61.111 0.00 0.00 34.19 4.02
75 76 2.046892 CCCTGCGGAACTGGTGAG 60.047 66.667 0.00 0.00 35.64 3.51
76 77 2.583441 CCCTGCGGAACTGGTGAGA 61.583 63.158 0.00 0.00 35.64 3.27
77 78 1.599047 CCTGCGGAACTGGTGAGAT 59.401 57.895 0.00 0.00 32.81 2.75
78 79 0.460987 CCTGCGGAACTGGTGAGATC 60.461 60.000 0.00 0.00 32.81 2.75
79 80 0.247460 CTGCGGAACTGGTGAGATCA 59.753 55.000 0.00 0.00 0.00 2.92
80 81 0.684535 TGCGGAACTGGTGAGATCAA 59.315 50.000 0.00 0.00 0.00 2.57
81 82 1.278985 TGCGGAACTGGTGAGATCAAT 59.721 47.619 0.00 0.00 0.00 2.57
82 83 1.936547 GCGGAACTGGTGAGATCAATC 59.063 52.381 0.00 0.00 0.00 2.67
83 84 2.419297 GCGGAACTGGTGAGATCAATCT 60.419 50.000 0.00 0.00 40.50 2.40
95 96 4.870123 AGATCAATCTCAGAATCTCCGG 57.130 45.455 0.00 0.00 29.30 5.14
96 97 4.478203 AGATCAATCTCAGAATCTCCGGA 58.522 43.478 2.93 2.93 29.30 5.14
97 98 4.898265 AGATCAATCTCAGAATCTCCGGAA 59.102 41.667 5.23 0.00 29.30 4.30
98 99 5.365025 AGATCAATCTCAGAATCTCCGGAAA 59.635 40.000 5.23 0.00 29.30 3.13
99 100 5.016051 TCAATCTCAGAATCTCCGGAAAG 57.984 43.478 5.23 0.00 0.00 2.62
100 101 4.125703 CAATCTCAGAATCTCCGGAAAGG 58.874 47.826 5.23 0.00 42.97 3.11
101 102 1.482593 TCTCAGAATCTCCGGAAAGGC 59.517 52.381 5.23 0.00 40.77 4.35
102 103 1.484240 CTCAGAATCTCCGGAAAGGCT 59.516 52.381 5.23 0.00 40.77 4.58
103 104 1.909302 TCAGAATCTCCGGAAAGGCTT 59.091 47.619 5.23 0.00 40.77 4.35
104 105 2.093447 TCAGAATCTCCGGAAAGGCTTC 60.093 50.000 5.23 1.39 40.77 3.86
105 106 1.134670 AGAATCTCCGGAAAGGCTTCG 60.135 52.381 5.23 0.00 40.77 3.79
106 107 0.613777 AATCTCCGGAAAGGCTTCGT 59.386 50.000 5.23 0.00 40.77 3.85
107 108 0.108138 ATCTCCGGAAAGGCTTCGTG 60.108 55.000 5.23 0.00 40.77 4.35
108 109 1.741770 CTCCGGAAAGGCTTCGTGG 60.742 63.158 5.23 2.56 40.77 4.94
109 110 2.167398 CTCCGGAAAGGCTTCGTGGA 62.167 60.000 5.23 7.15 40.77 4.02
110 111 1.078426 CCGGAAAGGCTTCGTGGAT 60.078 57.895 0.00 0.00 32.23 3.41
111 112 0.177141 CCGGAAAGGCTTCGTGGATA 59.823 55.000 0.00 0.00 32.23 2.59
112 113 1.202651 CCGGAAAGGCTTCGTGGATAT 60.203 52.381 0.00 0.00 32.23 1.63
113 114 1.867233 CGGAAAGGCTTCGTGGATATG 59.133 52.381 0.00 0.00 31.77 1.78
114 115 2.483013 CGGAAAGGCTTCGTGGATATGA 60.483 50.000 0.00 0.00 31.77 2.15
115 116 2.872858 GGAAAGGCTTCGTGGATATGAC 59.127 50.000 0.00 0.00 31.77 3.06
116 117 2.225068 AAGGCTTCGTGGATATGACG 57.775 50.000 0.00 0.00 38.20 4.35
117 118 1.399714 AGGCTTCGTGGATATGACGA 58.600 50.000 3.05 3.05 43.83 4.20
118 119 1.338337 AGGCTTCGTGGATATGACGAG 59.662 52.381 6.65 4.00 45.89 4.18
119 120 1.603172 GGCTTCGTGGATATGACGAGG 60.603 57.143 10.18 10.18 45.89 4.63
120 121 1.772182 CTTCGTGGATATGACGAGGC 58.228 55.000 6.65 0.00 45.89 4.70
121 122 1.067060 CTTCGTGGATATGACGAGGCA 59.933 52.381 6.65 0.00 45.89 4.75
122 123 1.107945 TCGTGGATATGACGAGGCAA 58.892 50.000 3.05 0.00 40.79 4.52
123 124 1.202371 TCGTGGATATGACGAGGCAAC 60.202 52.381 3.05 0.00 40.79 4.17
135 136 3.264845 GGCAACTGGGGAGGGGAA 61.265 66.667 0.00 0.00 0.00 3.97
136 137 2.356667 GCAACTGGGGAGGGGAAG 59.643 66.667 0.00 0.00 0.00 3.46
137 138 3.090765 CAACTGGGGAGGGGAAGG 58.909 66.667 0.00 0.00 0.00 3.46
138 139 2.204306 AACTGGGGAGGGGAAGGG 60.204 66.667 0.00 0.00 0.00 3.95
139 140 3.910646 AACTGGGGAGGGGAAGGGG 62.911 68.421 0.00 0.00 0.00 4.79
190 191 3.838271 GGCGAGGAGGCATGTCGA 61.838 66.667 6.83 0.00 45.92 4.20
191 192 2.279120 GCGAGGAGGCATGTCGAG 60.279 66.667 6.83 0.00 35.70 4.04
192 193 3.069980 GCGAGGAGGCATGTCGAGT 62.070 63.158 6.83 0.00 35.70 4.18
193 194 1.226802 CGAGGAGGCATGTCGAGTG 60.227 63.158 0.00 0.00 35.70 3.51
194 195 1.142748 GAGGAGGCATGTCGAGTGG 59.857 63.158 0.00 0.00 0.00 4.00
195 196 1.305297 AGGAGGCATGTCGAGTGGA 60.305 57.895 0.00 0.00 0.00 4.02
196 197 0.689080 AGGAGGCATGTCGAGTGGAT 60.689 55.000 0.00 0.00 0.00 3.41
197 198 1.040646 GGAGGCATGTCGAGTGGATA 58.959 55.000 0.00 0.00 0.00 2.59
198 199 1.000283 GGAGGCATGTCGAGTGGATAG 60.000 57.143 0.00 0.00 0.00 2.08
199 200 0.390860 AGGCATGTCGAGTGGATAGC 59.609 55.000 0.00 0.00 0.00 2.97
200 201 0.941463 GGCATGTCGAGTGGATAGCG 60.941 60.000 0.00 0.00 0.00 4.26
201 202 1.552348 GCATGTCGAGTGGATAGCGC 61.552 60.000 0.00 0.00 0.00 5.92
202 203 1.008424 ATGTCGAGTGGATAGCGCG 60.008 57.895 0.00 0.00 0.00 6.86
203 204 2.353607 GTCGAGTGGATAGCGCGG 60.354 66.667 8.83 0.00 0.00 6.46
204 205 4.266070 TCGAGTGGATAGCGCGGC 62.266 66.667 8.83 0.00 0.00 6.53
206 207 4.266070 GAGTGGATAGCGCGGCGA 62.266 66.667 28.54 6.36 0.00 5.54
207 208 4.271816 AGTGGATAGCGCGGCGAG 62.272 66.667 28.54 9.37 0.00 5.03
208 209 4.266070 GTGGATAGCGCGGCGAGA 62.266 66.667 28.54 13.13 0.00 4.04
209 210 3.966104 TGGATAGCGCGGCGAGAG 61.966 66.667 28.54 3.73 0.00 3.20
221 222 2.279120 CGAGAGCTGCGGTGGATC 60.279 66.667 0.00 0.00 0.00 3.36
222 223 2.780094 CGAGAGCTGCGGTGGATCT 61.780 63.158 0.00 0.00 31.78 2.75
223 224 1.227205 GAGAGCTGCGGTGGATCTG 60.227 63.158 0.00 0.00 29.09 2.90
224 225 2.202987 GAGCTGCGGTGGATCTGG 60.203 66.667 0.00 0.00 0.00 3.86
225 226 4.479993 AGCTGCGGTGGATCTGGC 62.480 66.667 0.00 0.00 0.00 4.85
226 227 4.783621 GCTGCGGTGGATCTGGCA 62.784 66.667 0.00 0.00 0.00 4.92
227 228 2.046023 CTGCGGTGGATCTGGCAA 60.046 61.111 0.00 0.00 34.60 4.52
228 229 1.452651 CTGCGGTGGATCTGGCAAT 60.453 57.895 0.00 0.00 34.60 3.56
229 230 1.721664 CTGCGGTGGATCTGGCAATG 61.722 60.000 0.00 0.00 34.60 2.82
230 231 2.484062 GCGGTGGATCTGGCAATGG 61.484 63.158 0.00 0.00 0.00 3.16
231 232 2.484062 CGGTGGATCTGGCAATGGC 61.484 63.158 0.00 0.00 40.13 4.40
232 233 2.484062 GGTGGATCTGGCAATGGCG 61.484 63.158 1.51 0.00 42.47 5.69
233 234 1.451927 GTGGATCTGGCAATGGCGA 60.452 57.895 1.51 3.10 42.47 5.54
234 235 1.153107 TGGATCTGGCAATGGCGAG 60.153 57.895 1.51 0.00 46.10 5.03
235 236 2.550101 GGATCTGGCAATGGCGAGC 61.550 63.158 0.00 5.42 44.58 5.03
236 237 2.890109 GATCTGGCAATGGCGAGCG 61.890 63.158 0.00 0.00 44.58 5.03
259 260 4.657824 CGTGAGGTCGCCGTGGTT 62.658 66.667 0.00 0.00 0.00 3.67
260 261 3.041940 GTGAGGTCGCCGTGGTTG 61.042 66.667 0.00 0.00 0.00 3.77
261 262 4.980805 TGAGGTCGCCGTGGTTGC 62.981 66.667 0.00 0.00 0.00 4.17
283 284 3.564218 GGGGGAGCGGATGAGCAT 61.564 66.667 0.00 0.00 40.15 3.79
284 285 2.031768 GGGGAGCGGATGAGCATC 59.968 66.667 1.86 1.86 40.15 3.91
377 379 9.467796 AAATAAATCAAAAACCAAAAAGACCCA 57.532 25.926 0.00 0.00 0.00 4.51
378 380 8.675705 ATAAATCAAAAACCAAAAAGACCCAG 57.324 30.769 0.00 0.00 0.00 4.45
379 381 5.948742 ATCAAAAACCAAAAAGACCCAGA 57.051 34.783 0.00 0.00 0.00 3.86
384 389 7.174080 TCAAAAACCAAAAAGACCCAGAAAAAG 59.826 33.333 0.00 0.00 0.00 2.27
387 392 6.560003 ACCAAAAAGACCCAGAAAAAGAAT 57.440 33.333 0.00 0.00 0.00 2.40
402 407 7.484007 CAGAAAAAGAATGATTCAGTGGATTCG 59.516 37.037 8.03 0.00 31.38 3.34
406 411 1.358877 TGATTCAGTGGATTCGTGCG 58.641 50.000 0.00 0.00 0.00 5.34
407 412 0.026803 GATTCAGTGGATTCGTGCGC 59.973 55.000 0.00 0.00 0.00 6.09
486 492 3.612681 GAGGTATAGGCGCGCCCA 61.613 66.667 44.47 34.90 36.58 5.36
498 504 4.910585 CGCCCATGCCGTACCCTC 62.911 72.222 0.00 0.00 0.00 4.30
499 505 3.792736 GCCCATGCCGTACCCTCA 61.793 66.667 0.00 0.00 0.00 3.86
500 506 2.994699 CCCATGCCGTACCCTCAA 59.005 61.111 0.00 0.00 0.00 3.02
501 507 1.301623 CCCATGCCGTACCCTCAAA 59.698 57.895 0.00 0.00 0.00 2.69
502 508 0.322997 CCCATGCCGTACCCTCAAAA 60.323 55.000 0.00 0.00 0.00 2.44
503 509 1.540267 CCATGCCGTACCCTCAAAAA 58.460 50.000 0.00 0.00 0.00 1.94
507 513 2.865079 TGCCGTACCCTCAAAAATCAA 58.135 42.857 0.00 0.00 0.00 2.57
533 539 3.644884 AATCTACGAATGCCGGACTAG 57.355 47.619 5.05 0.00 43.93 2.57
540 546 2.293677 CGAATGCCGGACTAGTCTACAT 59.706 50.000 21.88 18.15 33.91 2.29
549 555 4.260948 CGGACTAGTCTACATAAACGGACC 60.261 50.000 21.88 0.31 0.00 4.46
552 558 3.881937 AGTCTACATAAACGGACCCAC 57.118 47.619 0.00 0.00 0.00 4.61
577 583 2.482336 ACGCAGATAAAAATGCACGACA 59.518 40.909 0.00 0.00 42.68 4.35
578 584 3.093574 CGCAGATAAAAATGCACGACAG 58.906 45.455 0.00 0.00 42.68 3.51
579 585 3.429085 GCAGATAAAAATGCACGACAGG 58.571 45.455 0.00 0.00 42.11 4.00
581 587 4.728882 GCAGATAAAAATGCACGACAGGAG 60.729 45.833 0.00 0.00 42.11 3.69
582 588 3.375299 AGATAAAAATGCACGACAGGAGC 59.625 43.478 0.00 0.00 0.00 4.70
583 589 1.317613 AAAAATGCACGACAGGAGCA 58.682 45.000 0.00 0.00 43.14 4.26
584 590 0.877071 AAAATGCACGACAGGAGCAG 59.123 50.000 0.00 0.00 42.14 4.24
585 591 0.035317 AAATGCACGACAGGAGCAGA 59.965 50.000 0.00 0.00 42.14 4.26
586 592 0.251354 AATGCACGACAGGAGCAGAT 59.749 50.000 0.00 0.00 42.14 2.90
587 593 1.114627 ATGCACGACAGGAGCAGATA 58.885 50.000 0.00 0.00 42.14 1.98
588 594 0.173481 TGCACGACAGGAGCAGATAC 59.827 55.000 0.00 0.00 33.75 2.24
600 623 4.011698 GGAGCAGATACCTACTAGCTACC 58.988 52.174 0.00 0.00 31.61 3.18
602 625 3.072768 AGCAGATACCTACTAGCTACCGT 59.927 47.826 0.00 0.00 0.00 4.83
603 626 3.436359 GCAGATACCTACTAGCTACCGTC 59.564 52.174 0.00 0.00 0.00 4.79
604 627 4.002316 CAGATACCTACTAGCTACCGTCC 58.998 52.174 0.00 0.00 0.00 4.79
605 628 3.909364 AGATACCTACTAGCTACCGTCCT 59.091 47.826 0.00 0.00 0.00 3.85
606 629 5.046735 CAGATACCTACTAGCTACCGTCCTA 60.047 48.000 0.00 0.00 0.00 2.94
607 630 3.483808 ACCTACTAGCTACCGTCCTAC 57.516 52.381 0.00 0.00 0.00 3.18
608 631 2.105649 ACCTACTAGCTACCGTCCTACC 59.894 54.545 0.00 0.00 0.00 3.18
617 640 3.366781 GCTACCGTCCTACCGATATTTCC 60.367 52.174 0.00 0.00 0.00 3.13
619 642 1.068055 CCGTCCTACCGATATTTCCCG 60.068 57.143 0.00 0.00 0.00 5.14
626 649 1.346722 ACCGATATTTCCCGTGGATCC 59.653 52.381 4.20 4.20 0.00 3.36
636 659 3.576356 GTGGATCCACGCATGCGG 61.576 66.667 39.95 28.36 44.69 5.69
637 660 4.094646 TGGATCCACGCATGCGGT 62.095 61.111 39.95 24.42 44.69 5.68
664 707 0.825410 CACTGCATCTGAGCTCTCCT 59.175 55.000 16.19 0.00 34.99 3.69
665 708 0.825410 ACTGCATCTGAGCTCTCCTG 59.175 55.000 16.19 10.09 34.99 3.86
718 762 1.898574 GCAGCCCAATCATACGGGG 60.899 63.158 0.00 0.00 43.31 5.73
745 789 2.434884 ATGTTCAGCCTCCGCACG 60.435 61.111 0.00 0.00 37.52 5.34
918 979 3.808218 AAGCGAAAAGGCCCCAGCA 62.808 57.895 0.00 0.00 42.56 4.41
921 984 2.199652 CGAAAAGGCCCCAGCACAA 61.200 57.895 0.00 0.00 42.56 3.33
989 1052 2.599848 CGTGAAGTTGACTTTTGAGCGG 60.600 50.000 0.00 0.00 36.11 5.52
1008 1071 1.563577 GGAGGGAGGGACAAAGGACC 61.564 65.000 0.00 0.00 0.00 4.46
1009 1072 0.840722 GAGGGAGGGACAAAGGACCA 60.841 60.000 0.00 0.00 0.00 4.02
1074 1137 2.267351 CCAAGGCACCATTGTCGCA 61.267 57.895 0.00 0.00 30.10 5.10
1113 1179 3.120199 CCAAGTGCAGTGTATACTTGTGC 60.120 47.826 23.17 14.22 46.01 4.57
1116 1182 1.001520 TGCAGTGTATACTTGTGCGGT 59.998 47.619 15.38 0.00 34.07 5.68
1138 1222 2.902846 GGCGAGCGAGAGAGCCTA 60.903 66.667 0.00 0.00 41.95 3.93
1139 1223 2.637025 GCGAGCGAGAGAGCCTAG 59.363 66.667 0.00 0.00 38.01 3.02
1140 1224 1.890041 GCGAGCGAGAGAGCCTAGA 60.890 63.158 0.00 0.00 38.01 2.43
1141 1225 1.938861 CGAGCGAGAGAGCCTAGAC 59.061 63.158 0.00 0.00 38.01 2.59
1142 1226 1.827315 CGAGCGAGAGAGCCTAGACG 61.827 65.000 0.00 0.00 38.01 4.18
1143 1227 2.113131 GAGCGAGAGAGCCTAGACGC 62.113 65.000 0.00 0.00 45.03 5.19
1144 1228 2.184167 GCGAGAGAGCCTAGACGCT 61.184 63.158 0.00 0.00 43.42 5.07
1201 1297 4.101448 CGGTGCTCCCCTCCCTTG 62.101 72.222 0.00 0.00 0.00 3.61
1206 1302 3.041469 GCTCCCCTCCCTTGCTCTG 62.041 68.421 0.00 0.00 0.00 3.35
1221 1317 0.655733 CTCTGCGTTTTCGTTGTGGT 59.344 50.000 0.00 0.00 46.03 4.16
1227 1331 2.286772 GCGTTTTCGTTGTGGTGAAGAT 60.287 45.455 0.00 0.00 46.03 2.40
1230 1334 1.234821 TTCGTTGTGGTGAAGATGGC 58.765 50.000 0.00 0.00 0.00 4.40
1231 1335 0.948623 TCGTTGTGGTGAAGATGGCG 60.949 55.000 0.00 0.00 0.00 5.69
1232 1336 0.948623 CGTTGTGGTGAAGATGGCGA 60.949 55.000 0.00 0.00 0.00 5.54
1233 1337 1.453155 GTTGTGGTGAAGATGGCGAT 58.547 50.000 0.00 0.00 0.00 4.58
1234 1338 2.627945 GTTGTGGTGAAGATGGCGATA 58.372 47.619 0.00 0.00 0.00 2.92
1235 1339 3.206150 GTTGTGGTGAAGATGGCGATAT 58.794 45.455 0.00 0.00 0.00 1.63
1244 1348 1.135915 AGATGGCGATATCGATGGAGC 59.864 52.381 28.63 9.28 43.02 4.70
1324 1428 2.681778 CTGGTCTCCTCCGTGCCT 60.682 66.667 0.00 0.00 0.00 4.75
1346 1450 3.131577 TGTGTCGAGTAAGTGTTTGACCT 59.868 43.478 0.00 0.00 0.00 3.85
1357 1465 1.256812 GTTTGACCTCCAACCCCATG 58.743 55.000 0.00 0.00 33.85 3.66
1360 1468 1.678970 GACCTCCAACCCCATGCAC 60.679 63.158 0.00 0.00 0.00 4.57
1376 1484 2.779282 CACGCATGCATGGACCTTA 58.221 52.632 27.34 0.00 0.00 2.69
1412 1552 5.559770 TCATCTTCTTTCTTGGCATGTGTA 58.440 37.500 0.00 0.00 0.00 2.90
1445 1599 4.497300 TGCATCTTAATTTTGAGCCTTGC 58.503 39.130 0.00 0.00 0.00 4.01
1466 1620 0.249073 CTCGGATGTAGGAAGCGTGG 60.249 60.000 0.00 0.00 0.00 4.94
1473 1627 2.966732 TAGGAAGCGTGGCCTTGGG 61.967 63.158 3.32 0.00 35.73 4.12
1482 1636 1.683011 CGTGGCCTTGGGAAATCATCT 60.683 52.381 3.32 0.00 0.00 2.90
1506 1660 3.951680 GCCTCAGCTTCTAGTCTAACTCT 59.048 47.826 0.00 0.00 35.50 3.24
1515 1669 1.142097 GTCTAACTCTGGAGGCGGC 59.858 63.158 0.00 0.00 0.00 6.53
1537 1691 2.027745 GCCTGTTCAGGTCAATCTCTCA 60.028 50.000 18.42 0.00 0.00 3.27
1573 1729 4.092968 CCTTTGCCGTTCTTGTAGATGTAC 59.907 45.833 0.00 0.00 0.00 2.90
1575 1731 3.845178 TGCCGTTCTTGTAGATGTACAG 58.155 45.455 0.33 0.00 40.33 2.74
1577 1733 4.460034 TGCCGTTCTTGTAGATGTACAGTA 59.540 41.667 0.33 0.00 40.33 2.74
1578 1734 5.126545 TGCCGTTCTTGTAGATGTACAGTAT 59.873 40.000 0.33 0.00 40.33 2.12
1579 1735 6.319405 TGCCGTTCTTGTAGATGTACAGTATA 59.681 38.462 0.33 0.00 40.33 1.47
1580 1736 7.013942 TGCCGTTCTTGTAGATGTACAGTATAT 59.986 37.037 0.33 0.00 40.33 0.86
1624 1780 5.108187 AGTTGTGGCTTGATGATAGATGT 57.892 39.130 0.00 0.00 0.00 3.06
1628 1784 4.039609 TGTGGCTTGATGATAGATGTCGAT 59.960 41.667 0.00 0.00 0.00 3.59
1667 1827 0.613853 TACGTACCTGGCTCTGGCTT 60.614 55.000 0.00 0.00 38.73 4.35
1702 1863 3.770040 CCGGAGCCGTCACCATGA 61.770 66.667 8.25 0.00 37.81 3.07
1729 1890 0.822121 GCCTGTTCCCTTGTCCGTTT 60.822 55.000 0.00 0.00 0.00 3.60
1730 1891 1.235724 CCTGTTCCCTTGTCCGTTTC 58.764 55.000 0.00 0.00 0.00 2.78
1731 1892 1.476110 CCTGTTCCCTTGTCCGTTTCA 60.476 52.381 0.00 0.00 0.00 2.69
1732 1893 1.873591 CTGTTCCCTTGTCCGTTTCAG 59.126 52.381 0.00 0.00 0.00 3.02
1733 1894 1.210967 TGTTCCCTTGTCCGTTTCAGT 59.789 47.619 0.00 0.00 0.00 3.41
1734 1895 2.435069 TGTTCCCTTGTCCGTTTCAGTA 59.565 45.455 0.00 0.00 0.00 2.74
1804 1970 9.494271 CTAGCTAGCAGGAAACATAATTGATAA 57.506 33.333 18.83 0.00 0.00 1.75
1842 2058 1.141858 CCATTTGACTAGGGAGGGAGC 59.858 57.143 0.00 0.00 0.00 4.70
1858 2074 0.800300 GAGCTAGCGCACTCACACTC 60.800 60.000 14.09 2.38 39.10 3.51
1935 2170 3.530535 GCACCCACAGTTTGACAAAATT 58.469 40.909 1.27 0.00 0.00 1.82
2009 2256 1.099879 GCCAGTGCACTGATCCCATC 61.100 60.000 41.50 19.63 46.59 3.51
2010 2257 0.465097 CCAGTGCACTGATCCCATCC 60.465 60.000 41.50 0.95 46.59 3.51
2015 2262 1.150081 CACTGATCCCATCCCCAGC 59.850 63.158 0.00 0.00 0.00 4.85
2074 2331 3.640407 ACATGCGTGGCCACTCCT 61.640 61.111 32.28 16.17 35.26 3.69
2085 2342 1.133668 GGCCACTCCTCATAAGCCATT 60.134 52.381 0.00 0.00 40.20 3.16
2154 2600 0.313672 TGCAACAAGAACATTCCCGC 59.686 50.000 0.00 0.00 0.00 6.13
2156 2602 1.401539 GCAACAAGAACATTCCCGCTC 60.402 52.381 0.00 0.00 0.00 5.03
2174 2621 2.830827 CCGGTGTGGTGTTTGCCA 60.831 61.111 0.00 0.00 35.93 4.92
2251 2701 0.724785 GACACTAACGCGGCTTTTGC 60.725 55.000 12.47 0.00 46.64 3.68
2444 2900 6.331061 CGTGTATAGGGAGATTAGTAATGGC 58.669 44.000 0.00 0.00 0.00 4.40
2448 2904 7.956315 TGTATAGGGAGATTAGTAATGGCTCTT 59.044 37.037 0.00 0.00 0.00 2.85
2449 2905 5.816955 AGGGAGATTAGTAATGGCTCTTC 57.183 43.478 0.00 0.00 0.00 2.87
2465 2925 4.630069 GGCTCTTCTCTAGTCTAGATAGCG 59.370 50.000 10.06 7.24 35.08 4.26
2467 2927 5.477607 TCTTCTCTAGTCTAGATAGCGCT 57.522 43.478 17.26 17.26 33.66 5.92
2468 2928 5.860611 TCTTCTCTAGTCTAGATAGCGCTT 58.139 41.667 18.68 2.89 33.66 4.68
2469 2929 5.699001 TCTTCTCTAGTCTAGATAGCGCTTG 59.301 44.000 18.68 1.13 33.66 4.01
2470 2930 5.216614 TCTCTAGTCTAGATAGCGCTTGA 57.783 43.478 18.68 0.00 33.66 3.02
2471 2931 5.612351 TCTCTAGTCTAGATAGCGCTTGAA 58.388 41.667 18.68 0.00 33.66 2.69
2472 2932 5.699001 TCTCTAGTCTAGATAGCGCTTGAAG 59.301 44.000 18.68 8.88 33.66 3.02
2473 2933 5.369833 TCTAGTCTAGATAGCGCTTGAAGT 58.630 41.667 18.68 0.00 0.00 3.01
2474 2934 4.561735 AGTCTAGATAGCGCTTGAAGTC 57.438 45.455 18.68 6.78 0.00 3.01
2475 2935 3.316868 AGTCTAGATAGCGCTTGAAGTCC 59.683 47.826 18.68 0.00 0.00 3.85
2476 2936 2.290916 TCTAGATAGCGCTTGAAGTCCG 59.709 50.000 18.68 0.00 0.00 4.79
2477 2937 0.103208 AGATAGCGCTTGAAGTCCGG 59.897 55.000 18.68 0.00 0.00 5.14
2478 2938 0.102481 GATAGCGCTTGAAGTCCGGA 59.898 55.000 18.68 0.00 0.00 5.14
2479 2939 0.535335 ATAGCGCTTGAAGTCCGGAA 59.465 50.000 18.68 0.00 0.00 4.30
2480 2940 0.108804 TAGCGCTTGAAGTCCGGAAG 60.109 55.000 18.68 0.00 0.00 3.46
2481 2941 1.374252 GCGCTTGAAGTCCGGAAGA 60.374 57.895 5.23 0.00 0.00 2.87
2482 2942 0.741221 GCGCTTGAAGTCCGGAAGAT 60.741 55.000 5.23 0.00 0.00 2.40
2483 2943 1.470979 GCGCTTGAAGTCCGGAAGATA 60.471 52.381 5.23 0.00 0.00 1.98
2484 2944 2.194271 CGCTTGAAGTCCGGAAGATAC 58.806 52.381 5.23 0.00 0.00 2.24
2485 2945 2.159226 CGCTTGAAGTCCGGAAGATACT 60.159 50.000 5.23 0.00 0.00 2.12
2495 2963 1.737793 CGGAAGATACTTGTTGGTGGC 59.262 52.381 0.00 0.00 0.00 5.01
2518 2986 3.558033 AGTCCAACGGGTTAAACATGTT 58.442 40.909 4.92 4.92 34.93 2.71
2526 2994 4.454504 ACGGGTTAAACATGTTTCTGCTAG 59.545 41.667 26.46 16.35 34.23 3.42
2532 3000 3.969287 ACATGTTTCTGCTAGCTCTCA 57.031 42.857 17.23 8.46 0.00 3.27
2579 3047 6.371809 AGCACTTTTCGATAGTGTCAAAAA 57.628 33.333 21.96 2.46 43.81 1.94
2599 3067 5.385509 AAATGGTCTTACATTTTGGGACG 57.614 39.130 0.00 0.00 45.94 4.79
2600 3068 3.495434 TGGTCTTACATTTTGGGACGT 57.505 42.857 0.00 0.00 0.00 4.34
2623 3091 7.770433 ACGTAGGGAGTATATTATATGCGTGTA 59.230 37.037 0.00 0.00 0.00 2.90
2627 3095 6.097270 GGGAGTATATTATATGCGTGTACCCA 59.903 42.308 0.00 0.00 0.00 4.51
2668 4530 9.770097 TCATTCTTTTGATAGAGTATGGACATC 57.230 33.333 0.00 0.00 0.00 3.06
2708 4570 5.850557 ACTCAATGACACCAAATGAACAA 57.149 34.783 0.00 0.00 0.00 2.83
2720 4582 2.434359 GAACAAGACCGAGCGGGG 60.434 66.667 14.07 2.58 41.60 5.73
2730 4592 0.969894 CCGAGCGGGGAGAATTCTAT 59.030 55.000 8.25 0.00 0.00 1.98
2755 4617 7.661040 TCTTTGCTTCTTTTGCTAGCTATTTT 58.339 30.769 17.23 0.00 35.93 1.82
2757 4619 9.410556 CTTTGCTTCTTTTGCTAGCTATTTTAA 57.589 29.630 17.23 0.00 35.93 1.52
2758 4620 8.970691 TTGCTTCTTTTGCTAGCTATTTTAAG 57.029 30.769 17.23 12.80 35.93 1.85
2795 4663 7.661968 TCCTCAATAGTGACACAATAGCTATC 58.338 38.462 6.72 0.00 0.00 2.08
2800 4668 9.186323 CAATAGTGACACAATAGCTATCTGTAC 57.814 37.037 6.72 8.83 0.00 2.90
2801 4669 8.698973 ATAGTGACACAATAGCTATCTGTACT 57.301 34.615 6.72 14.28 0.00 2.73
2802 4670 7.033530 AGTGACACAATAGCTATCTGTACTC 57.966 40.000 6.72 11.01 0.00 2.59
2805 4674 6.017852 TGACACAATAGCTATCTGTACTCGAG 60.018 42.308 11.84 11.84 0.00 4.04
2820 4689 9.917129 TCTGTACTCGAGTTAATTTGTATTTGA 57.083 29.630 25.44 0.00 0.00 2.69
2843 4712 7.110155 TGAGTAAGTTGATTTTATGGGAGGAC 58.890 38.462 0.00 0.00 0.00 3.85
2848 4717 6.074648 AGTTGATTTTATGGGAGGACAAACA 58.925 36.000 0.00 0.00 0.00 2.83
2871 4740 4.042684 AGTTGAAGAAGGAAGGAGCTGAAT 59.957 41.667 0.00 0.00 0.00 2.57
2876 4745 3.054508 AGAAGGAAGGAGCTGAATGAAGG 60.055 47.826 0.00 0.00 0.00 3.46
2878 4747 2.915604 AGGAAGGAGCTGAATGAAGGAA 59.084 45.455 0.00 0.00 0.00 3.36
2885 4754 5.835280 AGGAGCTGAATGAAGGAAAAAGAAA 59.165 36.000 0.00 0.00 0.00 2.52
2886 4755 6.015603 AGGAGCTGAATGAAGGAAAAAGAAAG 60.016 38.462 0.00 0.00 0.00 2.62
2889 4758 7.432059 AGCTGAATGAAGGAAAAAGAAAGAAG 58.568 34.615 0.00 0.00 0.00 2.85
2891 4760 7.922811 GCTGAATGAAGGAAAAAGAAAGAAGAA 59.077 33.333 0.00 0.00 0.00 2.52
2892 4761 9.242477 CTGAATGAAGGAAAAAGAAAGAAGAAC 57.758 33.333 0.00 0.00 0.00 3.01
2897 4771 9.238368 TGAAGGAAAAAGAAAGAAGAACAACTA 57.762 29.630 0.00 0.00 0.00 2.24
2957 4832 7.721286 ATTCAAAATAAATTTTCACGCACCA 57.279 28.000 0.00 0.00 37.86 4.17
2971 4846 1.026718 GCACCAGTCCCCATTTCTCG 61.027 60.000 0.00 0.00 0.00 4.04
2981 4856 1.091771 CCATTTCTCGTGCAGCCGAT 61.092 55.000 6.46 0.00 36.08 4.18
3034 4909 1.970640 TGAAGCACCTTCTCAGCTGTA 59.029 47.619 14.67 0.00 40.73 2.74
3173 5058 7.976135 ACATATATCAACAGATCTGAAAGGC 57.024 36.000 29.27 0.00 0.00 4.35
3175 5060 7.660617 ACATATATCAACAGATCTGAAAGGCAG 59.339 37.037 29.27 12.40 46.31 4.85
3239 5128 1.765314 AGCTAAATCTGGATCGCTGGT 59.235 47.619 0.00 0.00 0.00 4.00
3255 5144 0.736053 TGGTGTGCGTTCCTTTCAAC 59.264 50.000 0.00 0.00 0.00 3.18
3269 5158 4.020573 TCCTTTCAACGGAGATAAGCAGAA 60.021 41.667 0.00 0.00 0.00 3.02
3293 5182 2.202932 GCATGGACGTGCGGATCT 60.203 61.111 1.60 0.00 35.10 2.75
3298 5187 2.125961 GGACGTGCGGATCTAGGGT 61.126 63.158 0.00 0.00 0.00 4.34
3316 5205 3.483421 GGGTAAACCTTATATGCCGCTT 58.517 45.455 0.00 0.00 35.85 4.68
3430 5319 0.254747 GGCTGGCCTAACCACACATA 59.745 55.000 3.32 0.00 46.36 2.29
3448 5337 3.262405 ACATAACGCCCTGGAAGTAAAGA 59.738 43.478 0.00 0.00 0.00 2.52
3467 5356 9.838339 AGTAAAGATAGTGCATGTTTAGCTAAT 57.162 29.630 7.08 0.00 34.13 1.73
3499 5388 2.200373 ACATTAGCCTCACGCCTTTT 57.800 45.000 0.00 0.00 38.78 2.27
3560 5449 7.680442 TCTGATCTCTCTGATAATAACTCCG 57.320 40.000 0.00 0.00 35.14 4.63
3571 5460 7.728981 TCTGATAATAACTCCGTAATCTCCCTT 59.271 37.037 0.00 0.00 0.00 3.95
3592 5481 6.828785 CCCTTACTACCTTTAGCAATGTCATT 59.171 38.462 0.00 0.00 0.00 2.57
3819 5737 3.387947 GAGGGGCCTTCGGTCGAA 61.388 66.667 0.84 5.67 0.00 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.731348 GCGATCAGGATCCGCGAC 60.731 66.667 8.23 0.00 34.40 5.19
5 6 3.581687 GAGCGGGCGATCAGGATCC 62.582 68.421 2.48 2.48 34.40 3.36
6 7 2.048690 GAGCGGGCGATCAGGATC 60.049 66.667 0.00 0.00 34.56 3.36
7 8 3.620785 GGAGCGGGCGATCAGGAT 61.621 66.667 0.00 0.00 31.28 3.24
9 10 4.899239 GTGGAGCGGGCGATCAGG 62.899 72.222 0.00 0.00 31.28 3.86
10 11 4.899239 GGTGGAGCGGGCGATCAG 62.899 72.222 0.00 0.00 31.28 2.90
17 18 4.410400 GGAGTTGGGTGGAGCGGG 62.410 72.222 0.00 0.00 0.00 6.13
18 19 4.760047 CGGAGTTGGGTGGAGCGG 62.760 72.222 0.00 0.00 0.00 5.52
19 20 3.649277 CTCGGAGTTGGGTGGAGCG 62.649 68.421 0.00 0.00 0.00 5.03
20 21 2.266055 CTCGGAGTTGGGTGGAGC 59.734 66.667 0.00 0.00 0.00 4.70
21 22 2.266055 GCTCGGAGTTGGGTGGAG 59.734 66.667 6.90 0.00 0.00 3.86
22 23 3.319198 GGCTCGGAGTTGGGTGGA 61.319 66.667 6.90 0.00 0.00 4.02
23 24 4.410400 GGGCTCGGAGTTGGGTGG 62.410 72.222 6.90 0.00 0.00 4.61
24 25 4.410400 GGGGCTCGGAGTTGGGTG 62.410 72.222 6.90 0.00 0.00 4.61
25 26 4.974438 TGGGGCTCGGAGTTGGGT 62.974 66.667 6.90 0.00 0.00 4.51
26 27 4.101448 CTGGGGCTCGGAGTTGGG 62.101 72.222 6.90 0.00 0.00 4.12
27 28 3.316573 GACTGGGGCTCGGAGTTGG 62.317 68.421 0.00 0.00 0.00 3.77
28 29 2.266055 GACTGGGGCTCGGAGTTG 59.734 66.667 0.00 0.00 0.00 3.16
29 30 2.203788 TGACTGGGGCTCGGAGTT 60.204 61.111 0.00 0.00 0.00 3.01
30 31 2.997897 GTGACTGGGGCTCGGAGT 60.998 66.667 0.00 0.00 0.00 3.85
31 32 3.775654 GGTGACTGGGGCTCGGAG 61.776 72.222 0.00 0.00 0.00 4.63
32 33 3.924013 ATGGTGACTGGGGCTCGGA 62.924 63.158 0.00 0.00 0.00 4.55
33 34 3.402681 ATGGTGACTGGGGCTCGG 61.403 66.667 0.00 0.00 0.00 4.63
34 35 2.124983 CATGGTGACTGGGGCTCG 60.125 66.667 0.00 0.00 0.00 5.03
35 36 1.222936 CTCATGGTGACTGGGGCTC 59.777 63.158 0.00 0.00 0.00 4.70
36 37 2.976490 GCTCATGGTGACTGGGGCT 61.976 63.158 0.00 0.00 0.00 5.19
37 38 2.439156 GCTCATGGTGACTGGGGC 60.439 66.667 0.00 0.00 0.00 5.80
38 39 1.377725 GTGCTCATGGTGACTGGGG 60.378 63.158 0.00 0.00 0.00 4.96
39 40 0.392193 GAGTGCTCATGGTGACTGGG 60.392 60.000 0.00 0.00 0.00 4.45
40 41 0.392193 GGAGTGCTCATGGTGACTGG 60.392 60.000 1.41 0.00 0.00 4.00
41 42 0.392193 GGGAGTGCTCATGGTGACTG 60.392 60.000 1.41 0.00 0.00 3.51
42 43 0.546267 AGGGAGTGCTCATGGTGACT 60.546 55.000 1.41 0.00 0.00 3.41
43 44 0.392193 CAGGGAGTGCTCATGGTGAC 60.392 60.000 1.41 0.00 0.00 3.67
44 45 1.985614 CAGGGAGTGCTCATGGTGA 59.014 57.895 1.41 0.00 0.00 4.02
45 46 4.631773 CAGGGAGTGCTCATGGTG 57.368 61.111 1.41 0.00 0.00 4.17
60 61 0.247460 TGATCTCACCAGTTCCGCAG 59.753 55.000 0.00 0.00 0.00 5.18
61 62 0.684535 TTGATCTCACCAGTTCCGCA 59.315 50.000 0.00 0.00 0.00 5.69
62 63 1.936547 GATTGATCTCACCAGTTCCGC 59.063 52.381 0.00 0.00 0.00 5.54
63 64 3.533606 AGATTGATCTCACCAGTTCCG 57.466 47.619 0.00 0.00 29.30 4.30
74 75 4.478203 TCCGGAGATTCTGAGATTGATCT 58.522 43.478 0.00 0.00 40.50 2.75
75 76 4.862902 TCCGGAGATTCTGAGATTGATC 57.137 45.455 0.00 0.00 0.00 2.92
76 77 5.454471 CCTTTCCGGAGATTCTGAGATTGAT 60.454 44.000 3.34 0.00 33.16 2.57
77 78 4.141846 CCTTTCCGGAGATTCTGAGATTGA 60.142 45.833 3.34 0.00 33.16 2.57
78 79 4.125703 CCTTTCCGGAGATTCTGAGATTG 58.874 47.826 3.34 0.00 33.16 2.67
79 80 3.432890 GCCTTTCCGGAGATTCTGAGATT 60.433 47.826 3.34 0.00 33.16 2.40
80 81 2.103941 GCCTTTCCGGAGATTCTGAGAT 59.896 50.000 3.34 0.00 33.16 2.75
81 82 1.482593 GCCTTTCCGGAGATTCTGAGA 59.517 52.381 3.34 0.00 33.16 3.27
82 83 1.484240 AGCCTTTCCGGAGATTCTGAG 59.516 52.381 3.34 0.00 33.16 3.35
83 84 1.573108 AGCCTTTCCGGAGATTCTGA 58.427 50.000 3.34 0.00 33.16 3.27
84 85 2.284190 GAAGCCTTTCCGGAGATTCTG 58.716 52.381 3.34 0.00 33.16 3.02
85 86 1.134670 CGAAGCCTTTCCGGAGATTCT 60.135 52.381 15.54 5.77 33.16 2.40
86 87 1.291132 CGAAGCCTTTCCGGAGATTC 58.709 55.000 3.34 7.20 33.16 2.52
87 88 0.613777 ACGAAGCCTTTCCGGAGATT 59.386 50.000 3.34 0.00 33.16 2.40
88 89 0.108138 CACGAAGCCTTTCCGGAGAT 60.108 55.000 3.34 0.00 33.16 2.75
89 90 1.292223 CACGAAGCCTTTCCGGAGA 59.708 57.895 3.34 0.00 33.16 3.71
90 91 1.741770 CCACGAAGCCTTTCCGGAG 60.742 63.158 3.34 0.00 33.16 4.63
91 92 1.550130 ATCCACGAAGCCTTTCCGGA 61.550 55.000 0.00 0.00 36.42 5.14
92 93 0.177141 TATCCACGAAGCCTTTCCGG 59.823 55.000 0.00 0.00 0.00 5.14
93 94 1.867233 CATATCCACGAAGCCTTTCCG 59.133 52.381 0.00 0.00 0.00 4.30
94 95 2.872858 GTCATATCCACGAAGCCTTTCC 59.127 50.000 0.00 0.00 0.00 3.13
95 96 2.540101 CGTCATATCCACGAAGCCTTTC 59.460 50.000 0.00 0.00 39.75 2.62
96 97 2.167693 TCGTCATATCCACGAAGCCTTT 59.832 45.455 4.30 0.00 43.13 3.11
97 98 1.754803 TCGTCATATCCACGAAGCCTT 59.245 47.619 4.30 0.00 43.13 4.35
98 99 1.338337 CTCGTCATATCCACGAAGCCT 59.662 52.381 7.62 0.00 45.27 4.58
99 100 1.603172 CCTCGTCATATCCACGAAGCC 60.603 57.143 7.62 0.00 45.27 4.35
100 101 1.772182 CCTCGTCATATCCACGAAGC 58.228 55.000 7.62 0.00 45.27 3.86
101 102 1.067060 TGCCTCGTCATATCCACGAAG 59.933 52.381 7.62 3.72 45.27 3.79
102 103 1.107945 TGCCTCGTCATATCCACGAA 58.892 50.000 7.62 0.00 45.27 3.85
103 104 1.107945 TTGCCTCGTCATATCCACGA 58.892 50.000 6.32 6.32 43.85 4.35
104 105 1.202417 AGTTGCCTCGTCATATCCACG 60.202 52.381 0.00 0.00 38.67 4.94
105 106 2.205074 CAGTTGCCTCGTCATATCCAC 58.795 52.381 0.00 0.00 0.00 4.02
106 107 1.138859 CCAGTTGCCTCGTCATATCCA 59.861 52.381 0.00 0.00 0.00 3.41
107 108 1.541233 CCCAGTTGCCTCGTCATATCC 60.541 57.143 0.00 0.00 0.00 2.59
108 109 1.541233 CCCCAGTTGCCTCGTCATATC 60.541 57.143 0.00 0.00 0.00 1.63
109 110 0.469917 CCCCAGTTGCCTCGTCATAT 59.530 55.000 0.00 0.00 0.00 1.78
110 111 0.616395 TCCCCAGTTGCCTCGTCATA 60.616 55.000 0.00 0.00 0.00 2.15
111 112 1.903877 CTCCCCAGTTGCCTCGTCAT 61.904 60.000 0.00 0.00 0.00 3.06
112 113 2.525629 TCCCCAGTTGCCTCGTCA 60.526 61.111 0.00 0.00 0.00 4.35
113 114 2.266055 CTCCCCAGTTGCCTCGTC 59.734 66.667 0.00 0.00 0.00 4.20
114 115 3.322466 CCTCCCCAGTTGCCTCGT 61.322 66.667 0.00 0.00 0.00 4.18
115 116 4.101448 CCCTCCCCAGTTGCCTCG 62.101 72.222 0.00 0.00 0.00 4.63
116 117 3.732849 CCCCTCCCCAGTTGCCTC 61.733 72.222 0.00 0.00 0.00 4.70
117 118 3.829311 TTCCCCTCCCCAGTTGCCT 62.829 63.158 0.00 0.00 0.00 4.75
118 119 3.264845 TTCCCCTCCCCAGTTGCC 61.265 66.667 0.00 0.00 0.00 4.52
119 120 2.356667 CTTCCCCTCCCCAGTTGC 59.643 66.667 0.00 0.00 0.00 4.17
120 121 2.616458 CCCTTCCCCTCCCCAGTTG 61.616 68.421 0.00 0.00 0.00 3.16
121 122 2.204306 CCCTTCCCCTCCCCAGTT 60.204 66.667 0.00 0.00 0.00 3.16
122 123 4.371231 CCCCTTCCCCTCCCCAGT 62.371 72.222 0.00 0.00 0.00 4.00
170 171 4.148825 ACATGCCTCCTCGCCGAC 62.149 66.667 0.00 0.00 0.00 4.79
171 172 3.838271 GACATGCCTCCTCGCCGA 61.838 66.667 0.00 0.00 0.00 5.54
173 174 3.781770 CTCGACATGCCTCCTCGCC 62.782 68.421 0.00 0.00 0.00 5.54
174 175 2.279120 CTCGACATGCCTCCTCGC 60.279 66.667 0.00 0.00 0.00 5.03
175 176 1.226802 CACTCGACATGCCTCCTCG 60.227 63.158 0.00 0.00 0.00 4.63
176 177 1.142748 CCACTCGACATGCCTCCTC 59.857 63.158 0.00 0.00 0.00 3.71
177 178 0.689080 ATCCACTCGACATGCCTCCT 60.689 55.000 0.00 0.00 0.00 3.69
178 179 1.000283 CTATCCACTCGACATGCCTCC 60.000 57.143 0.00 0.00 0.00 4.30
179 180 1.604185 GCTATCCACTCGACATGCCTC 60.604 57.143 0.00 0.00 0.00 4.70
180 181 0.390860 GCTATCCACTCGACATGCCT 59.609 55.000 0.00 0.00 0.00 4.75
181 182 0.941463 CGCTATCCACTCGACATGCC 60.941 60.000 0.00 0.00 0.00 4.40
182 183 1.552348 GCGCTATCCACTCGACATGC 61.552 60.000 0.00 0.00 0.00 4.06
183 184 1.271446 CGCGCTATCCACTCGACATG 61.271 60.000 5.56 0.00 0.00 3.21
184 185 1.008424 CGCGCTATCCACTCGACAT 60.008 57.895 5.56 0.00 0.00 3.06
185 186 2.407616 CGCGCTATCCACTCGACA 59.592 61.111 5.56 0.00 0.00 4.35
186 187 2.353607 CCGCGCTATCCACTCGAC 60.354 66.667 5.56 0.00 0.00 4.20
187 188 4.266070 GCCGCGCTATCCACTCGA 62.266 66.667 5.56 0.00 0.00 4.04
189 190 4.266070 TCGCCGCGCTATCCACTC 62.266 66.667 8.21 0.00 0.00 3.51
190 191 4.271816 CTCGCCGCGCTATCCACT 62.272 66.667 8.21 0.00 0.00 4.00
191 192 4.266070 TCTCGCCGCGCTATCCAC 62.266 66.667 8.21 0.00 0.00 4.02
192 193 3.966104 CTCTCGCCGCGCTATCCA 61.966 66.667 8.21 0.00 0.00 3.41
194 195 4.335584 AGCTCTCGCCGCGCTATC 62.336 66.667 8.21 0.00 36.60 2.08
195 196 4.637489 CAGCTCTCGCCGCGCTAT 62.637 66.667 8.21 0.00 36.60 2.97
203 204 4.521062 ATCCACCGCAGCTCTCGC 62.521 66.667 0.00 0.00 0.00 5.03
204 205 2.279120 GATCCACCGCAGCTCTCG 60.279 66.667 0.00 0.00 0.00 4.04
205 206 1.227205 CAGATCCACCGCAGCTCTC 60.227 63.158 0.00 0.00 0.00 3.20
206 207 2.729479 CCAGATCCACCGCAGCTCT 61.729 63.158 0.00 0.00 0.00 4.09
207 208 2.202987 CCAGATCCACCGCAGCTC 60.203 66.667 0.00 0.00 0.00 4.09
208 209 4.479993 GCCAGATCCACCGCAGCT 62.480 66.667 0.00 0.00 0.00 4.24
209 210 4.783621 TGCCAGATCCACCGCAGC 62.784 66.667 0.00 0.00 0.00 5.25
210 211 1.452651 ATTGCCAGATCCACCGCAG 60.453 57.895 0.00 0.00 31.86 5.18
211 212 1.750018 CATTGCCAGATCCACCGCA 60.750 57.895 0.00 0.00 0.00 5.69
212 213 2.484062 CCATTGCCAGATCCACCGC 61.484 63.158 0.00 0.00 0.00 5.68
213 214 2.484062 GCCATTGCCAGATCCACCG 61.484 63.158 0.00 0.00 0.00 4.94
214 215 2.484062 CGCCATTGCCAGATCCACC 61.484 63.158 0.00 0.00 0.00 4.61
215 216 1.442526 CTCGCCATTGCCAGATCCAC 61.443 60.000 0.00 0.00 0.00 4.02
216 217 1.153107 CTCGCCATTGCCAGATCCA 60.153 57.895 0.00 0.00 0.00 3.41
217 218 2.550101 GCTCGCCATTGCCAGATCC 61.550 63.158 0.00 0.00 0.00 3.36
218 219 2.890109 CGCTCGCCATTGCCAGATC 61.890 63.158 0.00 0.00 0.00 2.75
219 220 2.898840 CGCTCGCCATTGCCAGAT 60.899 61.111 0.00 0.00 0.00 2.90
242 243 4.657824 AACCACGGCGACCTCACG 62.658 66.667 16.62 0.00 0.00 4.35
243 244 3.041940 CAACCACGGCGACCTCAC 61.042 66.667 16.62 0.00 0.00 3.51
244 245 4.980805 GCAACCACGGCGACCTCA 62.981 66.667 16.62 0.00 0.00 3.86
266 267 3.543536 GATGCTCATCCGCTCCCCC 62.544 68.421 0.00 0.00 31.76 5.40
267 268 2.031768 GATGCTCATCCGCTCCCC 59.968 66.667 0.00 0.00 31.76 4.81
268 269 1.301558 CTGATGCTCATCCGCTCCC 60.302 63.158 7.34 0.00 37.02 4.30
269 270 0.321021 ATCTGATGCTCATCCGCTCC 59.679 55.000 7.34 0.00 37.02 4.70
270 271 2.166821 AATCTGATGCTCATCCGCTC 57.833 50.000 7.34 0.00 37.02 5.03
271 272 2.634815 AAATCTGATGCTCATCCGCT 57.365 45.000 7.34 0.00 37.02 5.52
272 273 3.812053 ACTAAAATCTGATGCTCATCCGC 59.188 43.478 7.34 0.00 37.02 5.54
273 274 7.225538 ACTTTACTAAAATCTGATGCTCATCCG 59.774 37.037 7.34 1.66 37.02 4.18
274 275 8.443953 ACTTTACTAAAATCTGATGCTCATCC 57.556 34.615 7.34 0.00 37.02 3.51
354 356 7.852263 TCTGGGTCTTTTTGGTTTTTGATTTA 58.148 30.769 0.00 0.00 0.00 1.40
355 357 6.716284 TCTGGGTCTTTTTGGTTTTTGATTT 58.284 32.000 0.00 0.00 0.00 2.17
356 358 6.306643 TCTGGGTCTTTTTGGTTTTTGATT 57.693 33.333 0.00 0.00 0.00 2.57
358 360 5.746990 TTCTGGGTCTTTTTGGTTTTTGA 57.253 34.783 0.00 0.00 0.00 2.69
359 361 6.809630 TTTTCTGGGTCTTTTTGGTTTTTG 57.190 33.333 0.00 0.00 0.00 2.44
360 362 7.227873 TCTTTTTCTGGGTCTTTTTGGTTTTT 58.772 30.769 0.00 0.00 0.00 1.94
364 366 6.156083 TCATTCTTTTTCTGGGTCTTTTTGGT 59.844 34.615 0.00 0.00 0.00 3.67
366 368 8.667076 AATCATTCTTTTTCTGGGTCTTTTTG 57.333 30.769 0.00 0.00 0.00 2.44
368 370 8.021898 TGAATCATTCTTTTTCTGGGTCTTTT 57.978 30.769 0.00 0.00 0.00 2.27
370 372 6.779539 ACTGAATCATTCTTTTTCTGGGTCTT 59.220 34.615 0.00 0.00 0.00 3.01
371 373 6.208204 CACTGAATCATTCTTTTTCTGGGTCT 59.792 38.462 0.00 0.00 0.00 3.85
373 375 5.244626 CCACTGAATCATTCTTTTTCTGGGT 59.755 40.000 0.00 0.00 0.00 4.51
374 376 5.477984 TCCACTGAATCATTCTTTTTCTGGG 59.522 40.000 0.00 0.00 0.00 4.45
375 377 6.579666 TCCACTGAATCATTCTTTTTCTGG 57.420 37.500 0.00 0.00 0.00 3.86
376 378 7.484007 CGAATCCACTGAATCATTCTTTTTCTG 59.516 37.037 0.00 0.00 0.00 3.02
377 379 7.175641 ACGAATCCACTGAATCATTCTTTTTCT 59.824 33.333 0.00 0.00 0.00 2.52
378 380 7.272084 CACGAATCCACTGAATCATTCTTTTTC 59.728 37.037 0.00 0.00 0.00 2.29
379 381 7.086376 CACGAATCCACTGAATCATTCTTTTT 58.914 34.615 0.00 0.00 0.00 1.94
384 389 3.544834 CGCACGAATCCACTGAATCATTC 60.545 47.826 0.00 0.00 0.00 2.67
387 392 1.358877 CGCACGAATCCACTGAATCA 58.641 50.000 0.00 0.00 0.00 2.57
486 492 3.080300 TGATTTTTGAGGGTACGGCAT 57.920 42.857 0.00 0.00 0.00 4.40
501 507 9.019764 CGGCATTCGTAGATTTATTTTTGATTT 57.980 29.630 0.00 0.00 35.04 2.17
502 508 7.647715 CCGGCATTCGTAGATTTATTTTTGATT 59.352 33.333 0.00 0.00 35.04 2.57
503 509 7.012894 TCCGGCATTCGTAGATTTATTTTTGAT 59.987 33.333 0.00 0.00 35.04 2.57
507 513 5.820947 AGTCCGGCATTCGTAGATTTATTTT 59.179 36.000 0.00 0.00 35.04 1.82
533 539 2.533266 CGTGGGTCCGTTTATGTAGAC 58.467 52.381 0.00 0.00 0.00 2.59
540 546 1.006337 CGTTCCGTGGGTCCGTTTA 60.006 57.895 0.00 0.00 0.00 2.01
549 555 3.425404 CATTTTTATCTGCGTTCCGTGG 58.575 45.455 0.00 0.00 0.00 4.94
552 558 2.845967 GTGCATTTTTATCTGCGTTCCG 59.154 45.455 0.00 0.00 41.32 4.30
565 571 0.877071 CTGCTCCTGTCGTGCATTTT 59.123 50.000 0.00 0.00 40.07 1.82
577 583 4.263594 GGTAGCTAGTAGGTATCTGCTCCT 60.264 50.000 12.05 0.00 37.20 3.69
578 584 4.011698 GGTAGCTAGTAGGTATCTGCTCC 58.988 52.174 12.05 4.38 37.20 4.70
579 585 3.685756 CGGTAGCTAGTAGGTATCTGCTC 59.314 52.174 15.77 1.96 37.20 4.26
581 587 3.410508 ACGGTAGCTAGTAGGTATCTGC 58.589 50.000 15.77 2.90 30.21 4.26
582 588 4.002316 GGACGGTAGCTAGTAGGTATCTG 58.998 52.174 15.77 13.86 30.21 2.90
583 589 3.909364 AGGACGGTAGCTAGTAGGTATCT 59.091 47.826 15.77 5.09 30.21 1.98
584 590 4.284829 AGGACGGTAGCTAGTAGGTATC 57.715 50.000 12.05 10.60 30.21 2.24
585 591 4.019771 GGTAGGACGGTAGCTAGTAGGTAT 60.020 50.000 12.05 0.00 30.21 2.73
586 592 3.325135 GGTAGGACGGTAGCTAGTAGGTA 59.675 52.174 4.95 4.95 0.00 3.08
587 593 2.105649 GGTAGGACGGTAGCTAGTAGGT 59.894 54.545 7.12 7.12 0.00 3.08
588 594 2.777094 GGTAGGACGGTAGCTAGTAGG 58.223 57.143 0.00 0.00 0.00 3.18
600 623 1.610522 ACGGGAAATATCGGTAGGACG 59.389 52.381 0.00 0.00 0.00 4.79
602 625 1.965643 CCACGGGAAATATCGGTAGGA 59.034 52.381 0.00 0.00 0.00 2.94
603 626 1.965643 TCCACGGGAAATATCGGTAGG 59.034 52.381 0.00 0.00 0.00 3.18
604 627 3.368116 GGATCCACGGGAAATATCGGTAG 60.368 52.174 6.95 0.00 34.34 3.18
605 628 2.564062 GGATCCACGGGAAATATCGGTA 59.436 50.000 6.95 0.00 34.34 4.02
606 629 1.346722 GGATCCACGGGAAATATCGGT 59.653 52.381 6.95 0.00 34.34 4.69
607 630 1.346395 TGGATCCACGGGAAATATCGG 59.654 52.381 11.44 0.00 34.34 4.18
608 631 2.413837 GTGGATCCACGGGAAATATCG 58.586 52.381 28.52 0.00 37.19 2.92
619 642 3.576356 CCGCATGCGTGGATCCAC 61.576 66.667 35.55 31.59 46.55 4.02
664 707 2.282251 AGAGTGCGTCGGAGTCCA 60.282 61.111 16.89 0.00 0.00 4.02
665 708 2.179517 CAGAGTGCGTCGGAGTCC 59.820 66.667 16.89 0.00 0.00 3.85
700 744 1.898574 CCCCGTATGATTGGGCTGC 60.899 63.158 0.00 0.00 44.58 5.25
718 762 1.226491 GCTGAACATCATGCGTGCC 60.226 57.895 0.00 0.00 0.00 5.01
878 931 0.811281 CTGGATTTTTCCGGCTGGAC 59.189 55.000 15.79 1.50 46.45 4.02
918 979 1.089481 CACGACAGTGCCTGTGTTGT 61.089 55.000 11.89 5.13 45.44 3.32
989 1052 1.563577 GGTCCTTTGTCCCTCCCTCC 61.564 65.000 0.00 0.00 0.00 4.30
1074 1137 2.279120 GCTATCGAGCTGCTGCGT 60.279 61.111 7.01 4.70 45.98 5.24
1116 1182 4.851179 TCTCTCGCTCGCCGCCTA 62.851 66.667 0.00 0.00 36.73 3.93
1134 1218 2.649843 CTTCCGTCGAGCGTCTAGGC 62.650 65.000 0.00 0.00 39.32 3.93
1135 1219 1.088340 TCTTCCGTCGAGCGTCTAGG 61.088 60.000 0.00 0.00 39.32 3.02
1136 1220 0.302288 CTCTTCCGTCGAGCGTCTAG 59.698 60.000 0.00 0.00 39.32 2.43
1137 1221 0.108472 TCTCTTCCGTCGAGCGTCTA 60.108 55.000 0.00 0.00 39.32 2.59
1138 1222 1.363145 CTCTCTTCCGTCGAGCGTCT 61.363 60.000 0.00 0.00 39.32 4.18
1139 1223 1.061253 CTCTCTTCCGTCGAGCGTC 59.939 63.158 0.00 0.00 39.32 5.19
1140 1224 2.400158 CCTCTCTTCCGTCGAGCGT 61.400 63.158 0.00 0.00 39.32 5.07
1141 1225 2.405594 CCTCTCTTCCGTCGAGCG 59.594 66.667 0.00 0.00 40.95 5.03
1142 1226 2.103340 GCCTCTCTTCCGTCGAGC 59.897 66.667 0.00 0.00 0.00 5.03
1143 1227 2.405594 CGCCTCTCTTCCGTCGAG 59.594 66.667 0.00 0.00 0.00 4.04
1144 1228 3.132139 CCGCCTCTCTTCCGTCGA 61.132 66.667 0.00 0.00 0.00 4.20
1145 1229 3.114647 CTCCGCCTCTCTTCCGTCG 62.115 68.421 0.00 0.00 0.00 5.12
1146 1230 2.802106 CTCCGCCTCTCTTCCGTC 59.198 66.667 0.00 0.00 0.00 4.79
1147 1231 3.453679 GCTCCGCCTCTCTTCCGT 61.454 66.667 0.00 0.00 0.00 4.69
1197 1293 0.307760 AACGAAAACGCAGAGCAAGG 59.692 50.000 0.00 0.00 0.00 3.61
1199 1295 0.730265 ACAACGAAAACGCAGAGCAA 59.270 45.000 0.00 0.00 0.00 3.91
1201 1297 0.657368 CCACAACGAAAACGCAGAGC 60.657 55.000 0.00 0.00 0.00 4.09
1206 1302 1.062880 TCTTCACCACAACGAAAACGC 59.937 47.619 0.00 0.00 0.00 4.84
1221 1317 2.825532 TCCATCGATATCGCCATCTTCA 59.174 45.455 20.34 0.59 39.60 3.02
1227 1331 1.212751 CGCTCCATCGATATCGCCA 59.787 57.895 20.34 4.51 39.60 5.69
1230 1334 0.799917 CCTGCGCTCCATCGATATCG 60.800 60.000 19.14 19.14 41.45 2.92
1231 1335 0.528017 TCCTGCGCTCCATCGATATC 59.472 55.000 9.73 0.00 0.00 1.63
1232 1336 0.969149 TTCCTGCGCTCCATCGATAT 59.031 50.000 9.73 0.00 0.00 1.63
1233 1337 0.315251 CTTCCTGCGCTCCATCGATA 59.685 55.000 9.73 0.00 0.00 2.92
1234 1338 1.068753 CTTCCTGCGCTCCATCGAT 59.931 57.895 9.73 0.00 0.00 3.59
1235 1339 1.395045 ATCTTCCTGCGCTCCATCGA 61.395 55.000 9.73 0.00 0.00 3.59
1244 1348 2.176273 CGGGCTTCATCTTCCTGCG 61.176 63.158 0.00 0.00 0.00 5.18
1324 1428 3.131577 AGGTCAAACACTTACTCGACACA 59.868 43.478 0.00 0.00 0.00 3.72
1346 1450 3.582242 ATGCGTGCATGGGGTTGGA 62.582 57.895 6.53 0.00 35.03 3.53
1360 1468 1.382522 AAGTAAGGTCCATGCATGCG 58.617 50.000 21.69 14.24 0.00 4.73
1438 1578 0.749649 CTACATCCGAGAGCAAGGCT 59.250 55.000 0.00 0.00 43.88 4.58
1439 1579 0.249657 CCTACATCCGAGAGCAAGGC 60.250 60.000 0.00 0.00 0.00 4.35
1445 1599 1.025812 ACGCTTCCTACATCCGAGAG 58.974 55.000 0.00 0.00 0.00 3.20
1449 1603 1.883084 GCCACGCTTCCTACATCCG 60.883 63.158 0.00 0.00 0.00 4.18
1466 1620 2.158549 AGGCTAGATGATTTCCCAAGGC 60.159 50.000 0.00 0.00 0.00 4.35
1537 1691 1.065126 GGCAAAGGCATCAGGTAGAGT 60.065 52.381 0.00 0.00 43.71 3.24
1580 1736 9.834628 CAACTAATTTAATCCGCTTAACAGAAA 57.165 29.630 0.00 0.00 0.00 2.52
1584 1740 7.531716 CCACAACTAATTTAATCCGCTTAACA 58.468 34.615 0.00 0.00 0.00 2.41
1585 1741 6.471198 GCCACAACTAATTTAATCCGCTTAAC 59.529 38.462 0.00 0.00 0.00 2.01
1624 1780 5.834169 TGACTGTGTACAAGTAACAATCGA 58.166 37.500 0.00 0.00 0.00 3.59
1628 1784 6.506147 ACGTATGACTGTGTACAAGTAACAA 58.494 36.000 0.00 0.00 0.00 2.83
1667 1827 4.806936 CCACTGGCAAGCAGAAGA 57.193 55.556 0.00 0.00 0.00 2.87
1702 1863 0.178924 AAGGGAACAGGCAAGCCATT 60.179 50.000 14.40 7.09 38.92 3.16
1729 1890 2.099921 GCTTCGAGCCTCTGAATACTGA 59.900 50.000 0.00 0.00 34.48 3.41
1730 1891 2.100584 AGCTTCGAGCCTCTGAATACTG 59.899 50.000 3.66 0.00 43.77 2.74
1731 1892 2.383855 AGCTTCGAGCCTCTGAATACT 58.616 47.619 3.66 0.00 43.77 2.12
1732 1893 2.880963 AGCTTCGAGCCTCTGAATAC 57.119 50.000 3.66 0.00 43.77 1.89
1733 1894 2.294791 GCTAGCTTCGAGCCTCTGAATA 59.705 50.000 7.70 0.00 43.77 1.75
1734 1895 1.068434 GCTAGCTTCGAGCCTCTGAAT 59.932 52.381 7.70 0.00 43.77 2.57
1842 2058 0.523519 TCTGAGTGTGAGTGCGCTAG 59.476 55.000 9.73 0.00 0.00 3.42
1858 2074 5.404968 CAGAGAGCACTTGACTTAAACTCTG 59.595 44.000 0.00 0.00 41.28 3.35
1935 2170 1.514678 GCGTCCAAAGGTCACATGCA 61.515 55.000 0.00 0.00 0.00 3.96
2009 2256 3.845259 GCATGCATGTGGCTGGGG 61.845 66.667 26.79 0.00 45.15 4.96
2010 2257 3.071837 TGCATGCATGTGGCTGGG 61.072 61.111 26.79 0.03 45.15 4.45
2015 2262 2.055310 CTAGCCGTGCATGCATGTGG 62.055 60.000 32.28 28.05 0.00 4.17
2074 2331 6.018262 GCAATACAACTACGAATGGCTTATGA 60.018 38.462 0.00 0.00 0.00 2.15
2085 2342 2.690786 GTGGGTGCAATACAACTACGA 58.309 47.619 0.00 0.00 37.74 3.43
2133 2578 1.335872 CGGGAATGTTCTTGTTGCACC 60.336 52.381 0.00 0.00 0.00 5.01
2154 2600 2.551912 GCAAACACCACACCGGGAG 61.552 63.158 6.32 0.00 40.22 4.30
2156 2602 3.601685 GGCAAACACCACACCGGG 61.602 66.667 6.32 0.00 40.22 5.73
2174 2621 1.202336 GCACTCAGTTTGCAACTTGCT 60.202 47.619 14.78 0.00 45.31 3.91
2241 2688 0.179163 GTATGGACAGCAAAAGCCGC 60.179 55.000 0.00 0.00 0.00 6.53
2255 2705 1.449601 GTCACCACGCCCTGTATGG 60.450 63.158 0.00 0.00 39.57 2.74
2392 2848 2.499685 GGATCGACTTCACCCCCG 59.500 66.667 0.00 0.00 0.00 5.73
2444 2900 5.479306 AGCGCTATCTAGACTAGAGAAGAG 58.521 45.833 20.94 19.02 38.38 2.85
2448 2904 5.216614 TCAAGCGCTATCTAGACTAGAGA 57.783 43.478 12.05 11.94 38.38 3.10
2449 2905 5.468746 ACTTCAAGCGCTATCTAGACTAGAG 59.531 44.000 12.05 6.39 38.38 2.43
2465 2925 3.528597 AGTATCTTCCGGACTTCAAGC 57.471 47.619 1.83 0.00 0.00 4.01
2467 2927 4.884668 ACAAGTATCTTCCGGACTTCAA 57.115 40.909 1.83 0.00 31.04 2.69
2468 2928 4.562757 CCAACAAGTATCTTCCGGACTTCA 60.563 45.833 1.83 0.00 31.04 3.02
2469 2929 3.933332 CCAACAAGTATCTTCCGGACTTC 59.067 47.826 1.83 0.00 31.04 3.01
2470 2930 3.326880 ACCAACAAGTATCTTCCGGACTT 59.673 43.478 1.83 0.57 33.71 3.01
2471 2931 2.904434 ACCAACAAGTATCTTCCGGACT 59.096 45.455 1.83 0.00 0.00 3.85
2472 2932 3.000727 CACCAACAAGTATCTTCCGGAC 58.999 50.000 1.83 0.00 0.00 4.79
2473 2933 2.027561 CCACCAACAAGTATCTTCCGGA 60.028 50.000 0.00 0.00 0.00 5.14
2474 2934 2.356135 CCACCAACAAGTATCTTCCGG 58.644 52.381 0.00 0.00 0.00 5.14
2475 2935 1.737793 GCCACCAACAAGTATCTTCCG 59.262 52.381 0.00 0.00 0.00 4.30
2476 2936 1.737793 CGCCACCAACAAGTATCTTCC 59.262 52.381 0.00 0.00 0.00 3.46
2477 2937 2.673368 CTCGCCACCAACAAGTATCTTC 59.327 50.000 0.00 0.00 0.00 2.87
2478 2938 2.038557 ACTCGCCACCAACAAGTATCTT 59.961 45.455 0.00 0.00 0.00 2.40
2479 2939 1.623811 ACTCGCCACCAACAAGTATCT 59.376 47.619 0.00 0.00 0.00 1.98
2480 2940 2.000447 GACTCGCCACCAACAAGTATC 59.000 52.381 0.00 0.00 0.00 2.24
2481 2941 1.338769 GGACTCGCCACCAACAAGTAT 60.339 52.381 0.00 0.00 36.34 2.12
2482 2942 0.034337 GGACTCGCCACCAACAAGTA 59.966 55.000 0.00 0.00 36.34 2.24
2483 2943 1.227853 GGACTCGCCACCAACAAGT 60.228 57.895 0.00 0.00 36.34 3.16
2484 2944 1.227823 TGGACTCGCCACCAACAAG 60.228 57.895 0.00 0.00 43.33 3.16
2485 2945 2.911928 TGGACTCGCCACCAACAA 59.088 55.556 0.00 0.00 43.33 2.83
2495 2963 1.868469 TGTTTAACCCGTTGGACTCG 58.132 50.000 0.00 0.00 34.81 4.18
2532 3000 4.405548 AGAATGCTTCTTTCCTTGCTCTT 58.594 39.130 0.00 0.00 36.36 2.85
2564 3032 7.156000 TGTAAGACCATTTTTGACACTATCGA 58.844 34.615 0.00 0.00 0.00 3.59
2565 3033 7.359262 TGTAAGACCATTTTTGACACTATCG 57.641 36.000 0.00 0.00 0.00 2.92
2579 3047 4.028993 ACGTCCCAAAATGTAAGACCAT 57.971 40.909 0.00 0.00 0.00 3.55
2595 3063 6.261826 ACGCATATAATATACTCCCTACGTCC 59.738 42.308 0.00 0.00 0.00 4.79
2596 3064 7.130917 CACGCATATAATATACTCCCTACGTC 58.869 42.308 0.00 0.00 0.00 4.34
2599 3067 8.348507 GGTACACGCATATAATATACTCCCTAC 58.651 40.741 0.00 0.00 0.00 3.18
2600 3068 7.503566 GGGTACACGCATATAATATACTCCCTA 59.496 40.741 0.00 0.00 0.00 3.53
2623 3091 8.137745 AGAATGAAAAACATGAACATATGGGT 57.862 30.769 7.80 0.00 39.39 4.51
2664 3143 7.877612 TGAGTACAAATTGACATACACAGATGT 59.122 33.333 0.00 0.00 42.82 3.06
2668 4530 8.720562 TCATTGAGTACAAATTGACATACACAG 58.279 33.333 0.00 0.00 39.54 3.66
2708 4570 1.677637 GAATTCTCCCCGCTCGGTCT 61.678 60.000 7.59 0.00 0.00 3.85
2720 4582 8.242739 AGCAAAAGAAGCAAAGATAGAATTCTC 58.757 33.333 12.24 0.00 0.00 2.87
2730 4592 6.824305 AATAGCTAGCAAAAGAAGCAAAGA 57.176 33.333 18.83 0.00 38.75 2.52
2755 4617 7.981789 CACTATTGAGGAGCACAGAAATACTTA 59.018 37.037 0.00 0.00 0.00 2.24
2757 4619 6.155221 TCACTATTGAGGAGCACAGAAATACT 59.845 38.462 0.00 0.00 0.00 2.12
2758 4620 6.256757 GTCACTATTGAGGAGCACAGAAATAC 59.743 42.308 0.00 0.00 30.10 1.89
2766 4634 3.319137 TGTGTCACTATTGAGGAGCAC 57.681 47.619 4.27 0.00 30.10 4.40
2820 4689 7.027874 TGTCCTCCCATAAAATCAACTTACT 57.972 36.000 0.00 0.00 0.00 2.24
2843 4712 4.261363 GCTCCTTCCTTCTTCAACTGTTTG 60.261 45.833 0.00 0.00 0.00 2.93
2848 4717 2.975489 TCAGCTCCTTCCTTCTTCAACT 59.025 45.455 0.00 0.00 0.00 3.16
2871 4740 8.122472 AGTTGTTCTTCTTTCTTTTTCCTTCA 57.878 30.769 0.00 0.00 0.00 3.02
2891 4760 9.289782 GCCATTAGATTAAGATCCAATAGTTGT 57.710 33.333 0.00 0.00 32.44 3.32
2892 4761 9.288576 TGCCATTAGATTAAGATCCAATAGTTG 57.711 33.333 0.00 0.00 32.44 3.16
2933 4808 7.440856 ACTGGTGCGTGAAAATTTATTTTGAAT 59.559 29.630 5.24 0.00 39.86 2.57
2948 4823 2.063015 AAATGGGGACTGGTGCGTGA 62.063 55.000 0.00 0.00 0.00 4.35
2951 4826 1.002134 AGAAATGGGGACTGGTGCG 60.002 57.895 0.00 0.00 0.00 5.34
2954 4829 0.324943 CACGAGAAATGGGGACTGGT 59.675 55.000 0.00 0.00 0.00 4.00
2955 4830 1.026718 GCACGAGAAATGGGGACTGG 61.027 60.000 0.00 0.00 0.00 4.00
2957 4832 0.036010 CTGCACGAGAAATGGGGACT 60.036 55.000 0.00 0.00 0.00 3.85
2981 4856 2.736144 ATTAACTGCGGAAGTCGACA 57.264 45.000 19.50 0.00 38.56 4.35
3034 4909 4.217118 GTCCTTGTTGAGCTGTTGATCATT 59.783 41.667 0.00 0.00 38.48 2.57
3046 4931 2.684881 ACAGTTTGCAGTCCTTGTTGAG 59.315 45.455 0.00 0.00 0.00 3.02
3173 5058 5.793817 TCCCATATCAATCCGTACATTCTG 58.206 41.667 0.00 0.00 0.00 3.02
3175 5060 4.631813 GCTCCCATATCAATCCGTACATTC 59.368 45.833 0.00 0.00 0.00 2.67
3176 5061 4.041567 TGCTCCCATATCAATCCGTACATT 59.958 41.667 0.00 0.00 0.00 2.71
3177 5062 3.582647 TGCTCCCATATCAATCCGTACAT 59.417 43.478 0.00 0.00 0.00 2.29
3239 5128 0.462225 TCCGTTGAAAGGAACGCACA 60.462 50.000 0.00 0.00 45.89 4.57
3255 5144 3.743396 GCTTATGGTTCTGCTTATCTCCG 59.257 47.826 0.00 0.00 0.00 4.63
3269 5158 1.089481 CGCACGTCCATGCTTATGGT 61.089 55.000 6.24 0.00 43.80 3.55
3293 5182 3.905591 AGCGGCATATAAGGTTTACCCTA 59.094 43.478 1.45 0.00 45.47 3.53
3360 5249 8.974060 TCTGTGAACTTTGAGTAATAAAAGGT 57.026 30.769 5.07 0.00 37.65 3.50
3430 5319 3.518303 ACTATCTTTACTTCCAGGGCGTT 59.482 43.478 0.00 0.00 0.00 4.84
3448 5337 7.416664 CCCACAAATTAGCTAAACATGCACTAT 60.417 37.037 10.85 0.00 0.00 2.12
3523 5412 4.296912 AGAGATCAGATCAAGGTCACCAT 58.703 43.478 13.14 0.00 0.00 3.55
3560 5449 7.357429 TGCTAAAGGTAGTAAGGGAGATTAC 57.643 40.000 0.00 0.00 36.16 1.89
3571 5460 8.264347 TGATCAATGACATTGCTAAAGGTAGTA 58.736 33.333 21.17 2.31 40.05 1.82
3819 5737 5.482908 GGCGAGATCTATACATTTGGTCAT 58.517 41.667 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.