Multiple sequence alignment - TraesCS3D01G331800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G331800 chr3D 100.000 7177 0 0 1 7177 444050588 444057764 0.000000e+00 13254.0
1 TraesCS3D01G331800 chr3D 89.843 2747 191 34 2425 5127 444055714 444053012 0.000000e+00 3446.0
2 TraesCS3D01G331800 chr3D 93.043 115 5 3 5126 5237 145414245 145414359 1.600000e-36 165.0
3 TraesCS3D01G331800 chr3B 94.755 6349 197 26 856 7177 581957058 581963297 0.000000e+00 9755.0
4 TraesCS3D01G331800 chr3B 83.473 357 52 7 6769 7120 581962331 581962685 6.940000e-85 326.0
5 TraesCS3D01G331800 chr3B 81.421 183 29 5 1 182 707029604 707029782 2.090000e-30 145.0
6 TraesCS3D01G331800 chr3B 96.364 55 2 0 6036 6090 581962778 581962724 2.760000e-14 91.6
7 TraesCS3D01G331800 chr3A 91.555 2913 184 34 858 3753 585014294 585017161 0.000000e+00 3960.0
8 TraesCS3D01G331800 chr3A 92.350 1438 68 20 5137 6572 585018707 585020104 0.000000e+00 2008.0
9 TraesCS3D01G331800 chr3A 89.398 1528 109 21 2253 3761 585018804 585017311 0.000000e+00 1875.0
10 TraesCS3D01G331800 chr3A 90.421 1378 97 9 3778 5127 585017287 585018657 0.000000e+00 1781.0
11 TraesCS3D01G331800 chr3A 88.688 1326 128 14 3810 5127 585017161 585015850 0.000000e+00 1598.0
12 TraesCS3D01G331800 chr3A 92.124 419 29 4 1 418 585013862 585014277 8.020000e-164 588.0
13 TraesCS3D01G331800 chr3A 90.385 416 31 6 6769 7177 585020442 585020855 8.190000e-149 538.0
14 TraesCS3D01G331800 chr3A 79.151 542 70 16 183 683 654072358 654071819 1.150000e-87 335.0
15 TraesCS3D01G331800 chr3A 85.549 173 19 4 6597 6769 585020337 585020171 7.400000e-40 176.0
16 TraesCS3D01G331800 chrUn 92.323 1524 73 12 2253 3761 233534286 233535780 0.000000e+00 2126.0
17 TraesCS3D01G331800 chrUn 91.431 1377 64 11 3778 5127 233535807 233534458 0.000000e+00 1840.0
18 TraesCS3D01G331800 chrUn 91.574 1258 62 12 2519 3761 189383080 189384308 0.000000e+00 1696.0
19 TraesCS3D01G331800 chrUn 91.115 1283 60 11 3778 5033 189384335 189383080 0.000000e+00 1688.0
20 TraesCS3D01G331800 chrUn 94.182 825 36 7 2253 3068 388536114 388536935 0.000000e+00 1247.0
21 TraesCS3D01G331800 chrUn 92.615 650 27 2 4499 5127 388536935 388536286 0.000000e+00 915.0
22 TraesCS3D01G331800 chrUn 94.180 567 22 4 2427 2985 221553970 221554533 0.000000e+00 854.0
23 TraesCS3D01G331800 chrUn 92.730 564 20 2 4583 5125 221554533 221553970 0.000000e+00 795.0
24 TraesCS3D01G331800 chrUn 92.553 564 21 2 4583 5125 229488141 229487578 0.000000e+00 789.0
25 TraesCS3D01G331800 chrUn 96.078 102 3 1 5137 5237 233534383 233534282 1.600000e-36 165.0
26 TraesCS3D01G331800 chrUn 96.078 102 3 1 5137 5237 388536211 388536110 1.600000e-36 165.0
27 TraesCS3D01G331800 chr4D 92.126 1524 75 11 2253 3761 123679578 123678085 0.000000e+00 2108.0
28 TraesCS3D01G331800 chr4D 91.358 1377 65 11 3778 5127 123678058 123679407 0.000000e+00 1834.0
29 TraesCS3D01G331800 chr4D 80.279 502 59 16 177 643 499224955 499225451 6.890000e-90 342.0
30 TraesCS3D01G331800 chr5A 92.060 1524 77 12 2253 3761 492872825 492871331 0.000000e+00 2104.0
31 TraesCS3D01G331800 chr5A 91.213 1377 67 11 3778 5127 492871304 492872653 0.000000e+00 1823.0
32 TraesCS3D01G331800 chr5A 93.085 911 46 9 2251 3152 522358248 522359150 0.000000e+00 1317.0
33 TraesCS3D01G331800 chr5A 91.281 734 38 4 4415 5127 522359150 522358422 0.000000e+00 977.0
34 TraesCS3D01G331800 chr4A 91.979 1521 79 11 2253 3759 246691736 246690245 0.000000e+00 2093.0
35 TraesCS3D01G331800 chr4A 91.503 1377 62 12 3778 5127 246690216 246691564 0.000000e+00 1844.0
36 TraesCS3D01G331800 chr1A 90.705 1022 61 11 3778 4793 94622479 94623472 0.000000e+00 1330.0
37 TraesCS3D01G331800 chr1A 94.196 448 18 4 2253 2692 94623919 94623472 0.000000e+00 676.0
38 TraesCS3D01G331800 chr1A 93.043 115 5 3 5126 5237 94623809 94623923 1.600000e-36 165.0
39 TraesCS3D01G331800 chr7B 93.837 649 32 4 2253 2893 531987854 531987206 0.000000e+00 970.0
40 TraesCS3D01G331800 chr1D 80.651 553 68 18 177 693 285436550 285436001 6.750000e-105 392.0
41 TraesCS3D01G331800 chr1D 84.091 176 27 1 2 177 342226433 342226259 1.240000e-37 169.0
42 TraesCS3D01G331800 chr1D 80.925 173 29 4 7 177 258519681 258519851 4.520000e-27 134.0
43 TraesCS3D01G331800 chr2D 80.600 500 55 26 179 644 610893125 610892634 1.480000e-91 348.0
44 TraesCS3D01G331800 chr2D 86.913 298 36 3 179 475 551364947 551364652 1.490000e-86 331.0
45 TraesCS3D01G331800 chr2D 81.818 165 29 1 14 178 553990021 553990184 3.490000e-28 137.0
46 TraesCS3D01G331800 chr2A 79.612 515 70 16 179 659 611666455 611666968 3.210000e-88 337.0
47 TraesCS3D01G331800 chr7D 79.960 499 64 18 179 644 578916247 578915752 1.150000e-87 335.0
48 TraesCS3D01G331800 chr7D 96.078 102 3 1 5137 5237 382107443 382107342 1.600000e-36 165.0
49 TraesCS3D01G331800 chr7D 96.078 102 3 1 5137 5237 606915866 606915765 1.600000e-36 165.0
50 TraesCS3D01G331800 chr7D 96.078 102 3 1 5137 5237 626734327 626734226 1.600000e-36 165.0
51 TraesCS3D01G331800 chr7D 97.368 38 1 0 589 626 470205714 470205751 1.670000e-06 65.8
52 TraesCS3D01G331800 chr5B 87.162 296 33 4 179 471 575067588 575067881 1.490000e-86 331.0
53 TraesCS3D01G331800 chr5B 86.301 146 19 1 31 176 653430709 653430853 2.680000e-34 158.0
54 TraesCS3D01G331800 chr5B 82.486 177 30 1 2 178 691436020 691435845 3.470000e-33 154.0
55 TraesCS3D01G331800 chr6D 83.436 163 26 1 15 177 10432401 10432240 4.490000e-32 150.0
56 TraesCS3D01G331800 chr7A 80.606 165 28 3 13 175 486150066 486150228 2.720000e-24 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G331800 chr3D 444050588 444057764 7176 False 13254.000000 13254 100.000000 1 7177 1 chr3D.!!$F2 7176
1 TraesCS3D01G331800 chr3D 444053012 444055714 2702 True 3446.000000 3446 89.843000 2425 5127 1 chr3D.!!$R1 2702
2 TraesCS3D01G331800 chr3B 581957058 581963297 6239 False 5040.500000 9755 89.114000 856 7177 2 chr3B.!!$F2 6321
3 TraesCS3D01G331800 chr3A 585013862 585020855 6993 False 1775.000000 3960 91.367000 1 7177 5 chr3A.!!$F1 7176
4 TraesCS3D01G331800 chr3A 585015850 585020337 4487 True 1216.333333 1875 87.878333 2253 6769 3 chr3A.!!$R2 4516
5 TraesCS3D01G331800 chr3A 654071819 654072358 539 True 335.000000 335 79.151000 183 683 1 chr3A.!!$R1 500
6 TraesCS3D01G331800 chrUn 233534286 233535780 1494 False 2126.000000 2126 92.323000 2253 3761 1 chrUn.!!$F3 1508
7 TraesCS3D01G331800 chrUn 189383080 189384308 1228 False 1696.000000 1696 91.574000 2519 3761 1 chrUn.!!$F1 1242
8 TraesCS3D01G331800 chrUn 189383080 189384335 1255 True 1688.000000 1688 91.115000 3778 5033 1 chrUn.!!$R1 1255
9 TraesCS3D01G331800 chrUn 388536114 388536935 821 False 1247.000000 1247 94.182000 2253 3068 1 chrUn.!!$F4 815
10 TraesCS3D01G331800 chrUn 233534282 233535807 1525 True 1002.500000 1840 93.754500 3778 5237 2 chrUn.!!$R4 1459
11 TraesCS3D01G331800 chrUn 221553970 221554533 563 False 854.000000 854 94.180000 2427 2985 1 chrUn.!!$F2 558
12 TraesCS3D01G331800 chrUn 221553970 221554533 563 True 795.000000 795 92.730000 4583 5125 1 chrUn.!!$R2 542
13 TraesCS3D01G331800 chrUn 229487578 229488141 563 True 789.000000 789 92.553000 4583 5125 1 chrUn.!!$R3 542
14 TraesCS3D01G331800 chrUn 388536110 388536935 825 True 540.000000 915 94.346500 4499 5237 2 chrUn.!!$R5 738
15 TraesCS3D01G331800 chr4D 123678085 123679578 1493 True 2108.000000 2108 92.126000 2253 3761 1 chr4D.!!$R1 1508
16 TraesCS3D01G331800 chr4D 123678058 123679407 1349 False 1834.000000 1834 91.358000 3778 5127 1 chr4D.!!$F1 1349
17 TraesCS3D01G331800 chr5A 492871331 492872825 1494 True 2104.000000 2104 92.060000 2253 3761 1 chr5A.!!$R1 1508
18 TraesCS3D01G331800 chr5A 492871304 492872653 1349 False 1823.000000 1823 91.213000 3778 5127 1 chr5A.!!$F1 1349
19 TraesCS3D01G331800 chr5A 522358248 522359150 902 False 1317.000000 1317 93.085000 2251 3152 1 chr5A.!!$F2 901
20 TraesCS3D01G331800 chr5A 522358422 522359150 728 True 977.000000 977 91.281000 4415 5127 1 chr5A.!!$R2 712
21 TraesCS3D01G331800 chr4A 246690245 246691736 1491 True 2093.000000 2093 91.979000 2253 3759 1 chr4A.!!$R1 1506
22 TraesCS3D01G331800 chr4A 246690216 246691564 1348 False 1844.000000 1844 91.503000 3778 5127 1 chr4A.!!$F1 1349
23 TraesCS3D01G331800 chr1A 94622479 94623923 1444 False 747.500000 1330 91.874000 3778 5237 2 chr1A.!!$F1 1459
24 TraesCS3D01G331800 chr7B 531987206 531987854 648 True 970.000000 970 93.837000 2253 2893 1 chr7B.!!$R1 640
25 TraesCS3D01G331800 chr1D 285436001 285436550 549 True 392.000000 392 80.651000 177 693 1 chr1D.!!$R1 516
26 TraesCS3D01G331800 chr2A 611666455 611666968 513 False 337.000000 337 79.612000 179 659 1 chr2A.!!$F1 480

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
678 679 0.099082 CGAGTTAGGCCTGTCGAGTC 59.901 60.0 22.79 13.88 34.28 3.36 F
702 703 0.319727 ATAACGGACGCGTTTGGACA 60.320 50.0 15.53 0.00 33.80 4.02 F
961 970 0.363846 GCGTCGCGAGAAGAAAAGAG 59.636 55.0 10.24 0.00 45.01 2.85 F
1287 1300 0.824759 GCTACAACTCCCTCATCCGT 59.175 55.0 0.00 0.00 0.00 4.69 F
2444 2459 0.324738 TACAGAGCAGCAGCCTAGGT 60.325 55.0 11.31 0.00 43.56 3.08 F
3251 3287 0.615850 GCTTGCTCTTAGGGTGGACT 59.384 55.0 0.00 0.00 0.00 3.85 F
4758 4989 0.398318 GGGCAGAAGGAACACTCACT 59.602 55.0 0.00 0.00 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1775 1788 0.174389 GCTCAGCTCAAGATCGACCA 59.826 55.000 0.00 0.00 0.00 4.02 R
2407 2422 1.623811 GTACTGCCTTCCCTCAAGTCA 59.376 52.381 0.00 0.00 0.00 3.41 R
2444 2459 5.509498 AGCAAACCTGAATTCCTGCTTATA 58.491 37.500 2.27 0.00 36.79 0.98 R
2464 2479 5.514274 AAGATTCGGAAAACAGAAAAGCA 57.486 34.783 0.00 0.00 0.00 3.91 R
4047 4267 0.191064 TGCCCTCCCATACCTCCTAG 59.809 60.000 0.00 0.00 0.00 3.02 R
5240 5702 2.995283 TGAGCATGCAAGCTGATAAGT 58.005 42.857 22.97 0.00 46.75 2.24 R
6617 7111 0.179048 TTTGCCTGGATCGCGATGAT 60.179 50.000 29.09 2.35 41.06 2.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
145 146 0.304705 GTTGGATGCGGCTATTGTCG 59.695 55.000 0.00 0.00 45.15 4.35
146 147 0.813610 TTGGATGCGGCTATTGTCGG 60.814 55.000 2.88 0.00 42.23 4.79
149 150 4.849310 TGCGGCTATTGTCGGGCC 62.849 66.667 2.88 0.00 42.23 5.80
225 226 2.494870 CCCTTTGATTGAGCCCTTGAAG 59.505 50.000 0.00 0.00 0.00 3.02
228 229 4.766891 CCTTTGATTGAGCCCTTGAAGTTA 59.233 41.667 0.00 0.00 0.00 2.24
239 240 5.825151 AGCCCTTGAAGTTAAGAATATGCTC 59.175 40.000 0.00 0.00 0.00 4.26
252 253 2.252072 TATGCTCCACTTGCCGGTCC 62.252 60.000 1.90 0.00 0.00 4.46
260 261 0.112412 ACTTGCCGGTCCATTTCCTT 59.888 50.000 1.90 0.00 0.00 3.36
263 264 0.965439 TGCCGGTCCATTTCCTTTTG 59.035 50.000 1.90 0.00 0.00 2.44
264 265 0.389817 GCCGGTCCATTTCCTTTTGC 60.390 55.000 1.90 0.00 0.00 3.68
306 307 2.798283 GTTCACTTGTTCGTCCGAATCA 59.202 45.455 5.33 3.48 36.45 2.57
322 323 4.627467 CCGAATCAGACGAATCAAAGAACT 59.373 41.667 0.00 0.00 0.00 3.01
357 358 2.016393 TAGCAAGCTCCATCGGTCCG 62.016 60.000 4.39 4.39 0.00 4.79
371 372 1.448540 GTCCGTACTCCTCGTCCGA 60.449 63.158 0.00 0.00 0.00 4.55
395 396 4.278678 AGCATCGGAATTCATCGTTTTC 57.721 40.909 7.93 0.00 0.00 2.29
398 399 3.343941 TCGGAATTCATCGTTTTCCCT 57.656 42.857 7.93 0.00 36.38 4.20
400 401 5.031066 TCGGAATTCATCGTTTTCCCTAT 57.969 39.130 7.93 0.00 36.38 2.57
434 435 3.726291 AAAACCTGGTCGGAAAATGTG 57.274 42.857 0.00 0.00 36.31 3.21
435 436 2.358322 AACCTGGTCGGAAAATGTGT 57.642 45.000 0.00 0.00 36.31 3.72
436 437 2.358322 ACCTGGTCGGAAAATGTGTT 57.642 45.000 0.00 0.00 36.31 3.32
437 438 1.953686 ACCTGGTCGGAAAATGTGTTG 59.046 47.619 0.00 0.00 36.31 3.33
438 439 2.226330 CCTGGTCGGAAAATGTGTTGA 58.774 47.619 0.00 0.00 33.16 3.18
439 440 2.621055 CCTGGTCGGAAAATGTGTTGAA 59.379 45.455 0.00 0.00 33.16 2.69
440 441 3.550030 CCTGGTCGGAAAATGTGTTGAAC 60.550 47.826 0.00 0.00 33.16 3.18
441 442 3.017442 TGGTCGGAAAATGTGTTGAACA 58.983 40.909 0.00 0.00 44.79 3.18
443 444 7.954643 CCTGGTCGGAAAATGTGTTGAACATA 61.955 42.308 0.00 0.00 41.44 2.29
444 445 9.180551 CCTGGTCGGAAAATGTGTTGAACATAT 62.181 40.741 0.00 0.63 41.44 1.78
455 456 6.108687 TGTGTTGAACATATAGAGCTCAAGG 58.891 40.000 17.77 5.17 32.36 3.61
456 457 5.525378 GTGTTGAACATATAGAGCTCAAGGG 59.475 44.000 17.77 3.70 0.00 3.95
457 458 4.963318 TGAACATATAGAGCTCAAGGGG 57.037 45.455 17.77 4.83 0.00 4.79
459 460 5.464069 TGAACATATAGAGCTCAAGGGGTA 58.536 41.667 17.77 0.00 0.00 3.69
460 461 5.540337 TGAACATATAGAGCTCAAGGGGTAG 59.460 44.000 17.77 0.32 0.00 3.18
461 462 3.835395 ACATATAGAGCTCAAGGGGTAGC 59.165 47.826 17.77 0.00 39.08 3.58
464 465 3.083997 AGCTCAAGGGGTAGCCCG 61.084 66.667 24.14 11.39 46.66 6.13
465 466 3.081409 GCTCAAGGGGTAGCCCGA 61.081 66.667 24.14 15.11 46.66 5.14
466 467 3.095347 GCTCAAGGGGTAGCCCGAG 62.095 68.421 24.14 23.75 46.66 4.63
468 469 1.381327 TCAAGGGGTAGCCCGAGAG 60.381 63.158 24.14 14.77 46.66 3.20
469 470 1.686110 CAAGGGGTAGCCCGAGAGT 60.686 63.158 24.14 3.33 46.66 3.24
470 471 1.080538 AAGGGGTAGCCCGAGAGTT 59.919 57.895 24.14 9.94 46.66 3.01
471 472 0.976590 AAGGGGTAGCCCGAGAGTTC 60.977 60.000 24.14 0.00 46.66 3.01
472 473 1.381463 GGGGTAGCCCGAGAGTTCT 60.381 63.158 15.71 0.00 46.66 3.01
473 474 1.393487 GGGGTAGCCCGAGAGTTCTC 61.393 65.000 15.71 0.00 46.66 2.87
481 482 2.507324 GAGAGTTCTCGCGGTGGC 60.507 66.667 6.13 0.00 32.78 5.01
508 509 3.766691 GGCGGCAAGTACGGGAGA 61.767 66.667 3.07 0.00 0.00 3.71
509 510 2.202756 GCGGCAAGTACGGGAGAG 60.203 66.667 0.00 0.00 0.00 3.20
510 511 2.707849 GCGGCAAGTACGGGAGAGA 61.708 63.158 0.00 0.00 0.00 3.10
512 513 1.817209 GGCAAGTACGGGAGAGAGG 59.183 63.158 0.00 0.00 0.00 3.69
515 516 1.956159 GCAAGTACGGGAGAGAGGACT 60.956 57.143 0.00 0.00 0.00 3.85
517 518 2.944349 CAAGTACGGGAGAGAGGACTAC 59.056 54.545 0.00 0.00 0.00 2.73
519 520 2.171027 AGTACGGGAGAGAGGACTACTG 59.829 54.545 0.00 0.00 33.62 2.74
520 521 0.993470 ACGGGAGAGAGGACTACTGT 59.007 55.000 0.00 0.00 35.70 3.55
521 522 1.340211 ACGGGAGAGAGGACTACTGTG 60.340 57.143 0.00 0.00 38.71 3.66
522 523 1.107945 GGGAGAGAGGACTACTGTGC 58.892 60.000 0.00 0.00 34.56 4.57
523 524 1.107945 GGAGAGAGGACTACTGTGCC 58.892 60.000 0.00 0.00 34.93 5.01
524 525 0.736053 GAGAGAGGACTACTGTGCCG 59.264 60.000 0.00 0.00 34.93 5.69
525 526 0.681564 AGAGAGGACTACTGTGCCGG 60.682 60.000 0.00 0.00 34.93 6.13
526 527 0.966370 GAGAGGACTACTGTGCCGGT 60.966 60.000 1.90 0.00 34.93 5.28
527 528 1.215647 GAGGACTACTGTGCCGGTG 59.784 63.158 1.90 0.00 34.93 4.94
529 530 2.657237 GACTACTGTGCCGGTGCT 59.343 61.111 1.90 0.00 38.71 4.40
530 531 1.738099 GACTACTGTGCCGGTGCTG 60.738 63.158 1.90 2.96 38.71 4.41
531 532 2.434884 CTACTGTGCCGGTGCTGG 60.435 66.667 1.90 0.00 38.71 4.85
566 567 2.202756 GGAGCAAGGGTAGCGACG 60.203 66.667 0.00 0.00 37.01 5.12
568 569 2.678934 AGCAAGGGTAGCGACGGA 60.679 61.111 0.00 0.00 37.01 4.69
569 570 2.202756 GCAAGGGTAGCGACGGAG 60.203 66.667 0.00 0.00 0.00 4.63
570 571 2.202756 CAAGGGTAGCGACGGAGC 60.203 66.667 0.00 0.00 37.41 4.70
578 579 4.560856 GCGACGGAGCTGCGAGAT 62.561 66.667 34.91 12.39 0.00 2.75
579 580 2.653448 CGACGGAGCTGCGAGATG 60.653 66.667 34.91 15.74 0.00 2.90
580 581 2.492090 GACGGAGCTGCGAGATGT 59.508 61.111 34.91 11.52 0.00 3.06
581 582 1.587613 GACGGAGCTGCGAGATGTC 60.588 63.158 34.91 16.86 0.00 3.06
582 583 2.279120 CGGAGCTGCGAGATGTCC 60.279 66.667 24.56 0.00 0.00 4.02
584 585 1.219124 GGAGCTGCGAGATGTCCAA 59.781 57.895 0.00 0.00 0.00 3.53
585 586 0.179062 GGAGCTGCGAGATGTCCAAT 60.179 55.000 0.00 0.00 0.00 3.16
586 587 1.216122 GAGCTGCGAGATGTCCAATC 58.784 55.000 0.00 0.00 0.00 2.67
588 589 1.493950 GCTGCGAGATGTCCAATCCG 61.494 60.000 0.00 0.00 0.00 4.18
590 591 1.326951 TGCGAGATGTCCAATCCGGA 61.327 55.000 6.61 6.61 43.61 5.14
607 608 3.895232 CGGAGGATGAAAAAGAGAGGA 57.105 47.619 0.00 0.00 0.00 3.71
608 609 3.791245 CGGAGGATGAAAAAGAGAGGAG 58.209 50.000 0.00 0.00 0.00 3.69
610 611 4.441356 CGGAGGATGAAAAAGAGAGGAGAG 60.441 50.000 0.00 0.00 0.00 3.20
611 612 4.714308 GGAGGATGAAAAAGAGAGGAGAGA 59.286 45.833 0.00 0.00 0.00 3.10
612 613 5.163416 GGAGGATGAAAAAGAGAGGAGAGAG 60.163 48.000 0.00 0.00 0.00 3.20
614 615 4.081198 GGATGAAAAAGAGAGGAGAGAGCA 60.081 45.833 0.00 0.00 0.00 4.26
617 618 5.874093 TGAAAAAGAGAGGAGAGAGCAAAT 58.126 37.500 0.00 0.00 0.00 2.32
618 619 5.704515 TGAAAAAGAGAGGAGAGAGCAAATG 59.295 40.000 0.00 0.00 0.00 2.32
620 621 3.113191 AGAGAGGAGAGAGCAAATGGA 57.887 47.619 0.00 0.00 0.00 3.41
623 624 0.915364 AGGAGAGAGCAAATGGACCC 59.085 55.000 0.00 0.00 0.00 4.46
624 625 0.462759 GGAGAGAGCAAATGGACCCG 60.463 60.000 0.00 0.00 0.00 5.28
626 627 1.201429 AGAGAGCAAATGGACCCGGT 61.201 55.000 0.00 0.00 0.00 5.28
628 629 1.141053 GAGAGCAAATGGACCCGGTAT 59.859 52.381 0.00 0.00 0.00 2.73
629 630 2.367567 GAGAGCAAATGGACCCGGTATA 59.632 50.000 0.00 0.00 0.00 1.47
630 631 2.979678 AGAGCAAATGGACCCGGTATAT 59.020 45.455 0.00 0.00 0.00 0.86
631 632 3.008049 AGAGCAAATGGACCCGGTATATC 59.992 47.826 0.00 0.00 0.00 1.63
632 633 2.073816 GCAAATGGACCCGGTATATCG 58.926 52.381 0.00 0.00 0.00 2.92
634 635 3.585862 CAAATGGACCCGGTATATCGAG 58.414 50.000 7.05 0.00 0.00 4.04
635 636 1.848652 ATGGACCCGGTATATCGAGG 58.151 55.000 7.05 9.05 0.00 4.63
638 639 4.858994 CCCGGTATATCGAGGGGT 57.141 61.111 7.05 0.00 40.18 4.95
639 640 2.273908 CCCGGTATATCGAGGGGTG 58.726 63.158 7.05 0.00 40.18 4.61
640 641 1.255667 CCCGGTATATCGAGGGGTGG 61.256 65.000 7.05 0.00 40.18 4.61
641 642 0.251474 CCGGTATATCGAGGGGTGGA 60.251 60.000 7.05 0.00 0.00 4.02
642 643 1.618888 CCGGTATATCGAGGGGTGGAT 60.619 57.143 7.05 0.00 0.00 3.41
643 644 2.176889 CGGTATATCGAGGGGTGGATT 58.823 52.381 0.00 0.00 0.00 3.01
644 645 2.165845 CGGTATATCGAGGGGTGGATTC 59.834 54.545 0.00 0.00 0.00 2.52
645 646 3.170717 GGTATATCGAGGGGTGGATTCA 58.829 50.000 0.00 0.00 0.00 2.57
647 648 4.225267 GGTATATCGAGGGGTGGATTCAAT 59.775 45.833 0.00 0.00 0.00 2.57
648 649 2.645838 ATCGAGGGGTGGATTCAATG 57.354 50.000 0.00 0.00 0.00 2.82
649 650 1.285280 TCGAGGGGTGGATTCAATGT 58.715 50.000 0.00 0.00 0.00 2.71
650 651 2.473070 TCGAGGGGTGGATTCAATGTA 58.527 47.619 0.00 0.00 0.00 2.29
651 652 2.841266 TCGAGGGGTGGATTCAATGTAA 59.159 45.455 0.00 0.00 0.00 2.41
652 653 3.458118 TCGAGGGGTGGATTCAATGTAAT 59.542 43.478 0.00 0.00 0.00 1.89
654 655 4.644685 CGAGGGGTGGATTCAATGTAATTT 59.355 41.667 0.00 0.00 31.22 1.82
655 656 5.825679 CGAGGGGTGGATTCAATGTAATTTA 59.174 40.000 0.00 0.00 31.22 1.40
656 657 6.490040 CGAGGGGTGGATTCAATGTAATTTAT 59.510 38.462 0.00 0.00 31.22 1.40
657 658 7.522073 CGAGGGGTGGATTCAATGTAATTTATG 60.522 40.741 0.00 0.00 31.22 1.90
658 659 6.554605 AGGGGTGGATTCAATGTAATTTATGG 59.445 38.462 0.00 0.00 31.22 2.74
661 662 6.238897 GGTGGATTCAATGTAATTTATGGCGA 60.239 38.462 0.00 0.00 31.22 5.54
662 663 6.857964 GTGGATTCAATGTAATTTATGGCGAG 59.142 38.462 0.00 0.00 31.22 5.03
663 664 6.545666 TGGATTCAATGTAATTTATGGCGAGT 59.454 34.615 0.00 0.00 31.22 4.18
664 665 7.068103 TGGATTCAATGTAATTTATGGCGAGTT 59.932 33.333 0.00 0.00 31.22 3.01
665 666 8.564574 GGATTCAATGTAATTTATGGCGAGTTA 58.435 33.333 0.00 0.00 31.22 2.24
668 669 5.941948 ATGTAATTTATGGCGAGTTAGGC 57.058 39.130 0.00 0.00 37.19 3.93
670 671 6.915590 AATGTAATTTATGGCGAGTTAGGCCT 60.916 38.462 11.78 11.78 42.42 5.19
671 672 8.862894 AATGTAATTTATGGCGAGTTAGGCCTG 61.863 40.741 17.99 0.00 42.42 4.85
675 676 2.882876 GCGAGTTAGGCCTGTCGA 59.117 61.111 28.38 3.53 34.28 4.20
676 677 1.226717 GCGAGTTAGGCCTGTCGAG 60.227 63.158 28.38 14.38 34.28 4.04
677 678 1.935327 GCGAGTTAGGCCTGTCGAGT 61.935 60.000 28.38 11.47 34.28 4.18
678 679 0.099082 CGAGTTAGGCCTGTCGAGTC 59.901 60.000 22.79 13.88 34.28 3.36
679 680 1.465794 GAGTTAGGCCTGTCGAGTCT 58.534 55.000 17.99 2.70 0.00 3.24
681 682 3.015327 GAGTTAGGCCTGTCGAGTCTAA 58.985 50.000 17.99 0.00 0.00 2.10
682 683 2.754002 AGTTAGGCCTGTCGAGTCTAAC 59.246 50.000 17.99 15.95 39.72 2.34
683 684 2.490903 GTTAGGCCTGTCGAGTCTAACA 59.509 50.000 17.99 0.00 39.41 2.41
684 685 1.853963 AGGCCTGTCGAGTCTAACAT 58.146 50.000 3.11 0.00 0.00 2.71
685 686 3.014304 AGGCCTGTCGAGTCTAACATA 57.986 47.619 3.11 0.00 0.00 2.29
686 687 3.362706 AGGCCTGTCGAGTCTAACATAA 58.637 45.455 3.11 0.00 0.00 1.90
687 688 3.130693 AGGCCTGTCGAGTCTAACATAAC 59.869 47.826 3.11 0.00 0.00 1.89
689 690 3.692576 CCTGTCGAGTCTAACATAACGG 58.307 50.000 0.00 0.00 0.00 4.44
690 691 3.376234 CCTGTCGAGTCTAACATAACGGA 59.624 47.826 0.00 0.00 0.00 4.69
691 692 4.341099 CTGTCGAGTCTAACATAACGGAC 58.659 47.826 0.00 0.00 0.00 4.79
692 693 3.181517 TGTCGAGTCTAACATAACGGACG 60.182 47.826 0.00 0.00 34.34 4.79
693 694 2.107178 CGAGTCTAACATAACGGACGC 58.893 52.381 0.00 0.00 34.34 5.19
694 695 2.107178 GAGTCTAACATAACGGACGCG 58.893 52.381 3.53 3.53 34.34 6.01
695 696 1.470098 AGTCTAACATAACGGACGCGT 59.530 47.619 13.85 13.85 34.34 6.01
696 697 2.095059 AGTCTAACATAACGGACGCGTT 60.095 45.455 15.53 0.00 34.34 4.84
698 699 2.662637 TCTAACATAACGGACGCGTTTG 59.337 45.455 15.53 12.04 33.80 2.93
699 700 0.513820 AACATAACGGACGCGTTTGG 59.486 50.000 15.53 8.50 33.80 3.28
702 703 0.319727 ATAACGGACGCGTTTGGACA 60.320 50.000 15.53 0.00 33.80 4.02
704 705 1.161563 AACGGACGCGTTTGGACATT 61.162 50.000 15.53 0.00 0.00 2.71
705 706 1.131826 CGGACGCGTTTGGACATTC 59.868 57.895 15.53 0.00 0.00 2.67
706 707 1.289109 CGGACGCGTTTGGACATTCT 61.289 55.000 15.53 0.00 0.00 2.40
707 708 0.872388 GGACGCGTTTGGACATTCTT 59.128 50.000 15.53 0.00 0.00 2.52
708 709 1.399727 GGACGCGTTTGGACATTCTTG 60.400 52.381 15.53 0.00 0.00 3.02
710 711 2.477375 GACGCGTTTGGACATTCTTGTA 59.523 45.455 15.53 0.00 35.79 2.41
712 713 3.124636 ACGCGTTTGGACATTCTTGTATC 59.875 43.478 5.58 0.00 35.79 2.24
713 714 3.485216 CGCGTTTGGACATTCTTGTATCC 60.485 47.826 0.00 0.00 35.79 2.59
714 715 3.485216 GCGTTTGGACATTCTTGTATCCG 60.485 47.826 0.00 0.00 35.79 4.18
715 716 3.682858 CGTTTGGACATTCTTGTATCCGT 59.317 43.478 0.00 0.00 35.79 4.69
716 717 4.153475 CGTTTGGACATTCTTGTATCCGTT 59.847 41.667 0.00 0.00 35.79 4.44
719 720 5.925506 TGGACATTCTTGTATCCGTTCTA 57.074 39.130 0.00 0.00 35.79 2.10
720 721 6.479972 TGGACATTCTTGTATCCGTTCTAT 57.520 37.500 0.00 0.00 35.79 1.98
723 724 8.647796 TGGACATTCTTGTATCCGTTCTATATT 58.352 33.333 0.00 0.00 35.79 1.28
724 725 9.490379 GGACATTCTTGTATCCGTTCTATATTT 57.510 33.333 0.00 0.00 35.79 1.40
730 731 9.529325 TCTTGTATCCGTTCTATATTTGAGTTG 57.471 33.333 0.00 0.00 0.00 3.16
732 733 8.014070 TGTATCCGTTCTATATTTGAGTTGGA 57.986 34.615 0.00 0.00 0.00 3.53
733 734 8.647796 TGTATCCGTTCTATATTTGAGTTGGAT 58.352 33.333 0.00 0.00 36.52 3.41
751 752 4.537936 GGATACAAAAGTCGATCCAAGC 57.462 45.455 0.00 0.00 38.21 4.01
753 754 4.576463 GGATACAAAAGTCGATCCAAGCAT 59.424 41.667 0.00 0.00 38.21 3.79
754 755 5.066505 GGATACAAAAGTCGATCCAAGCATT 59.933 40.000 0.00 0.00 38.21 3.56
755 756 4.853924 ACAAAAGTCGATCCAAGCATTT 57.146 36.364 0.00 0.00 0.00 2.32
756 757 5.957842 ACAAAAGTCGATCCAAGCATTTA 57.042 34.783 0.00 0.00 0.00 1.40
757 758 6.325919 ACAAAAGTCGATCCAAGCATTTAA 57.674 33.333 0.00 0.00 0.00 1.52
758 759 6.381801 ACAAAAGTCGATCCAAGCATTTAAG 58.618 36.000 0.00 0.00 0.00 1.85
759 760 6.206634 ACAAAAGTCGATCCAAGCATTTAAGA 59.793 34.615 0.00 0.00 0.00 2.10
760 761 5.803020 AAGTCGATCCAAGCATTTAAGAC 57.197 39.130 0.00 0.00 0.00 3.01
761 762 3.865745 AGTCGATCCAAGCATTTAAGACG 59.134 43.478 0.00 0.00 0.00 4.18
762 763 2.607635 TCGATCCAAGCATTTAAGACGC 59.392 45.455 0.00 0.00 0.00 5.19
763 764 2.351418 CGATCCAAGCATTTAAGACGCA 59.649 45.455 0.00 0.00 0.00 5.24
764 765 3.544834 CGATCCAAGCATTTAAGACGCAG 60.545 47.826 0.00 0.00 0.00 5.18
765 766 2.083774 TCCAAGCATTTAAGACGCAGG 58.916 47.619 0.00 0.00 0.00 4.85
766 767 1.812571 CCAAGCATTTAAGACGCAGGT 59.187 47.619 0.00 0.00 0.00 4.00
767 768 2.414559 CCAAGCATTTAAGACGCAGGTG 60.415 50.000 0.00 0.00 0.00 4.00
768 769 2.185004 AGCATTTAAGACGCAGGTGT 57.815 45.000 0.00 0.00 0.00 4.16
769 770 2.076863 AGCATTTAAGACGCAGGTGTC 58.923 47.619 4.86 4.86 39.21 3.67
774 775 4.004348 AGACGCAGGTGTCTCGAT 57.996 55.556 9.58 0.00 45.97 3.59
775 776 1.508545 AGACGCAGGTGTCTCGATG 59.491 57.895 9.58 0.00 45.97 3.84
776 777 1.517257 GACGCAGGTGTCTCGATGG 60.517 63.158 5.76 0.00 35.95 3.51
777 778 2.202797 CGCAGGTGTCTCGATGGG 60.203 66.667 0.00 0.00 0.00 4.00
779 780 1.296715 GCAGGTGTCTCGATGGGTT 59.703 57.895 0.00 0.00 0.00 4.11
781 782 1.882352 GCAGGTGTCTCGATGGGTTTT 60.882 52.381 0.00 0.00 0.00 2.43
809 810 2.275418 GGTCATTGACCGGGCCAT 59.725 61.111 19.65 0.00 43.14 4.40
810 811 1.823899 GGTCATTGACCGGGCCATC 60.824 63.158 19.65 0.16 43.14 3.51
822 823 2.044946 GCCATCCGCCCTTTGAGT 60.045 61.111 0.00 0.00 0.00 3.41
823 824 2.409870 GCCATCCGCCCTTTGAGTG 61.410 63.158 0.00 0.00 0.00 3.51
824 825 1.750399 CCATCCGCCCTTTGAGTGG 60.750 63.158 0.00 0.00 36.16 4.00
826 827 0.745845 CATCCGCCCTTTGAGTGGAG 60.746 60.000 0.00 0.00 46.57 3.86
827 828 1.201429 ATCCGCCCTTTGAGTGGAGT 61.201 55.000 0.00 0.00 46.57 3.85
828 829 0.543410 TCCGCCCTTTGAGTGGAGTA 60.543 55.000 0.00 0.00 38.97 2.59
830 831 1.760613 CCGCCCTTTGAGTGGAGTATA 59.239 52.381 0.00 0.00 37.02 1.47
832 833 2.798499 CGCCCTTTGAGTGGAGTATACG 60.798 54.545 0.00 0.00 0.00 3.06
833 834 2.483188 GCCCTTTGAGTGGAGTATACGG 60.483 54.545 0.00 0.00 0.00 4.02
834 835 2.102588 CCCTTTGAGTGGAGTATACGGG 59.897 54.545 0.00 0.00 0.00 5.28
835 836 2.102588 CCTTTGAGTGGAGTATACGGGG 59.897 54.545 0.00 0.00 0.00 5.73
837 838 1.771565 TGAGTGGAGTATACGGGGTG 58.228 55.000 0.00 0.00 0.00 4.61
838 839 0.388294 GAGTGGAGTATACGGGGTGC 59.612 60.000 0.00 0.00 0.00 5.01
839 840 1.047034 AGTGGAGTATACGGGGTGCC 61.047 60.000 0.00 0.00 0.00 5.01
840 841 1.763256 TGGAGTATACGGGGTGCCC 60.763 63.158 0.00 0.00 41.09 5.36
851 852 4.101448 GGTGCCCGGCTCTCACAT 62.101 66.667 11.61 0.00 32.69 3.21
852 853 2.045926 GTGCCCGGCTCTCACATT 60.046 61.111 11.61 0.00 0.00 2.71
853 854 2.046023 TGCCCGGCTCTCACATTG 60.046 61.111 11.61 0.00 0.00 2.82
854 855 3.512516 GCCCGGCTCTCACATTGC 61.513 66.667 0.71 0.00 0.00 3.56
902 903 4.988598 CAACCGCCGGCACAGTCT 62.989 66.667 28.98 8.44 0.00 3.24
908 909 1.884926 GCCGGCACAGTCTATCAGC 60.885 63.158 24.80 0.00 0.00 4.26
909 910 1.517361 CCGGCACAGTCTATCAGCA 59.483 57.895 0.00 0.00 0.00 4.41
915 916 2.005451 CACAGTCTATCAGCACAAGCC 58.995 52.381 0.00 0.00 43.56 4.35
961 970 0.363846 GCGTCGCGAGAAGAAAAGAG 59.636 55.000 10.24 0.00 45.01 2.85
967 976 2.157863 CGCGAGAAGAAAAGAGAAACCC 59.842 50.000 0.00 0.00 0.00 4.11
1287 1300 0.824759 GCTACAACTCCCTCATCCGT 59.175 55.000 0.00 0.00 0.00 4.69
1494 1507 3.066190 CCCTACGTGCAGACCGGA 61.066 66.667 9.46 0.00 0.00 5.14
1613 1626 4.208686 CGGCGGGTACTCCAGAGC 62.209 72.222 0.00 0.00 34.36 4.09
1633 1646 1.712018 GGGGATGGTTAACGAAGCGC 61.712 60.000 0.00 0.00 35.75 5.92
1707 1720 1.108776 TGGTTAGCGTAATCTCGGCT 58.891 50.000 0.00 0.00 0.00 5.52
1775 1788 7.462328 TGCTTTTATAGATAGGAAGGGGATCAT 59.538 37.037 0.00 0.00 0.00 2.45
1851 1864 0.905809 TAGAGCGGGCAAGGTTGGTA 60.906 55.000 0.00 0.00 0.00 3.25
2058 2071 4.717233 TGCATTAATCTGCACGGAAAAT 57.283 36.364 0.00 0.00 46.76 1.82
2104 2117 5.811399 TTAGCTTCGGATTTGTAATGTGG 57.189 39.130 0.00 0.00 0.00 4.17
2143 2156 2.884827 TGACTCTTGATGATGACTGCG 58.115 47.619 0.00 0.00 0.00 5.18
2257 2270 6.759497 ATACAAGATACTTTCCAAGGTTGC 57.241 37.500 0.00 0.00 0.00 4.17
2259 2272 3.418684 AGATACTTTCCAAGGTTGCGT 57.581 42.857 0.00 0.00 0.00 5.24
2290 2303 3.355378 CCTAAAAGGTGCACATCCATCA 58.645 45.455 20.43 0.00 0.00 3.07
2371 2384 5.338632 TCCTGATTTCCCTGTTGTAGACTA 58.661 41.667 0.00 0.00 0.00 2.59
2372 2385 5.422331 TCCTGATTTCCCTGTTGTAGACTAG 59.578 44.000 0.00 0.00 0.00 2.57
2407 2422 6.983307 CGACTTTCATGATGGAAGAAGATACT 59.017 38.462 19.89 0.00 0.00 2.12
2444 2459 0.324738 TACAGAGCAGCAGCCTAGGT 60.325 55.000 11.31 0.00 43.56 3.08
2464 2479 6.079712 AGGTATAAGCAGGAATTCAGGTTT 57.920 37.500 16.35 10.17 0.00 3.27
2586 2601 3.579151 GCCGATAGAAGGGGAAAGATAGT 59.421 47.826 0.00 0.00 39.76 2.12
2640 2655 2.335681 TACCTCCATCCTGGTCAACA 57.664 50.000 0.00 0.00 39.03 3.33
2653 2668 4.085733 CTGGTCAACAATGGGGATTTGTA 58.914 43.478 0.00 0.00 36.32 2.41
2743 2766 7.997773 TTCTATAGTATGCCGAACTAGTGAT 57.002 36.000 0.00 0.00 33.15 3.06
2774 2797 2.642311 TGGTCAATGCCTACCTCAAAGA 59.358 45.455 0.00 0.00 36.67 2.52
2936 2959 9.311916 CAACATTCTTGAAACCTGACAAATTAA 57.688 29.630 0.00 0.00 0.00 1.40
2937 2960 8.871686 ACATTCTTGAAACCTGACAAATTAAC 57.128 30.769 0.00 0.00 0.00 2.01
2938 2961 8.695456 ACATTCTTGAAACCTGACAAATTAACT 58.305 29.630 0.00 0.00 0.00 2.24
3251 3287 0.615850 GCTTGCTCTTAGGGTGGACT 59.384 55.000 0.00 0.00 0.00 3.85
3361 3400 9.884814 AACCTCCTAATGTCTATACATAGAAGT 57.115 33.333 0.52 0.00 45.79 3.01
3381 3424 0.684805 AGTCCCAGGACCGAGTCATC 60.685 60.000 13.27 0.00 45.59 2.92
3649 3735 2.764269 TGATCCCCGAGAAGAGGATTT 58.236 47.619 0.00 0.00 40.54 2.17
3791 3984 6.600246 ACTTTCGAGTAAGAAACCAAAGTC 57.400 37.500 3.89 0.00 35.44 3.01
3950 4170 6.635641 CGGAGATCATAATGTCAAATTGCTTG 59.364 38.462 0.00 0.00 36.25 4.01
4047 4267 4.547406 AAGAAGCAAACTACCGTTGTTC 57.453 40.909 0.00 0.00 32.65 3.18
4408 4634 7.364149 TCAACACAACTTACCCTTTAGAGTA 57.636 36.000 0.00 0.00 0.00 2.59
4422 4648 5.465724 CCTTTAGAGTAAATACGATGCCACC 59.534 44.000 0.00 0.00 0.00 4.61
4557 4785 4.837093 TCCCAATACTTGACCTTCGATT 57.163 40.909 0.00 0.00 0.00 3.34
4574 4802 5.873179 TCGATTCAATTGTTTACTGGTCC 57.127 39.130 5.13 0.00 0.00 4.46
4758 4989 0.398318 GGGCAGAAGGAACACTCACT 59.602 55.000 0.00 0.00 0.00 3.41
4858 5109 2.355132 AGGTAGACGTGAAGCTACATCG 59.645 50.000 12.56 0.00 38.93 3.84
4940 5191 5.364157 ACTGAGATGGAGGTAATCTAACCAC 59.636 44.000 0.00 0.00 42.40 4.16
5065 5317 2.025131 ACTAGGACTCTCAGGTGGGTAC 60.025 54.545 0.00 0.00 0.00 3.34
5240 5702 5.431765 GAAGAATGCCACAATCCTTCTCTA 58.568 41.667 0.00 0.00 0.00 2.43
5305 5767 5.005740 TCATAGCACTCAGTCTTTGCAAAT 58.994 37.500 13.23 0.00 38.81 2.32
5306 5768 3.637998 AGCACTCAGTCTTTGCAAATG 57.362 42.857 13.23 8.63 38.81 2.32
6164 6626 2.687935 TGGAGGAAGTTGTTCTTGCAAC 59.312 45.455 0.00 1.16 45.05 4.17
6396 6858 1.208052 TCTCCAGTGTGAATGCCTAGC 59.792 52.381 0.00 0.00 0.00 3.42
6461 6924 7.119699 TGCATGTTGTATCAACCTAAAAGAGAG 59.880 37.037 9.60 0.00 0.00 3.20
6625 7119 1.912001 ATTTTTGCCACATCATCGCG 58.088 45.000 0.00 0.00 0.00 5.87
6629 7123 1.159713 TTGCCACATCATCGCGATCC 61.160 55.000 20.85 2.43 29.21 3.36
6690 7184 2.486982 CTCTTCACCAACATCAGGCTTG 59.513 50.000 0.00 0.00 0.00 4.01
6873 7477 2.158726 GCAGATTACGGGGGTTCCATTA 60.159 50.000 0.00 0.00 34.36 1.90
6941 7545 0.672401 ATTCGATGTTGCGTCCCGTT 60.672 50.000 0.00 0.00 0.00 4.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 1.064654 GAAGGAGATTGTCGCCATTGC 59.935 52.381 2.65 0.00 38.94 3.56
92 93 1.954362 ATCTCCTCTCAGCACCACGC 61.954 60.000 0.00 0.00 42.91 5.34
145 146 3.132467 CCCGCTATATAAACTCTAGGCCC 59.868 52.174 0.00 0.00 0.00 5.80
146 147 3.430513 GCCCGCTATATAAACTCTAGGCC 60.431 52.174 0.00 0.00 0.00 5.19
149 150 3.693085 TCCGCCCGCTATATAAACTCTAG 59.307 47.826 0.00 0.00 0.00 2.43
225 226 4.260784 CGGCAAGTGGAGCATATTCTTAAC 60.261 45.833 0.00 0.00 0.00 2.01
228 229 2.292267 CGGCAAGTGGAGCATATTCTT 58.708 47.619 0.00 0.00 0.00 2.52
239 240 1.595093 GGAAATGGACCGGCAAGTGG 61.595 60.000 0.00 0.00 0.00 4.00
252 253 4.500127 TCATGAGCATGCAAAAGGAAATG 58.500 39.130 21.98 10.75 38.65 2.32
285 286 2.798283 TGATTCGGACGAACAAGTGAAC 59.202 45.455 9.52 0.00 36.91 3.18
306 307 6.459066 TGAAGATGAGTTCTTTGATTCGTCT 58.541 36.000 0.00 0.00 44.88 4.18
322 323 7.400599 AGCTTGCTAAAATGATTGAAGATGA 57.599 32.000 0.00 0.00 0.00 2.92
341 342 0.527817 GTACGGACCGATGGAGCTTG 60.528 60.000 23.38 0.00 0.00 4.01
357 358 0.377905 GCTTCTCGGACGAGGAGTAC 59.622 60.000 25.83 10.86 46.83 2.73
371 372 3.185246 ACGATGAATTCCGATGCTTCT 57.815 42.857 10.51 0.00 0.00 2.85
418 419 2.226330 TCAACACATTTTCCGACCAGG 58.774 47.619 0.00 0.00 42.97 4.45
420 421 3.017442 TGTTCAACACATTTTCCGACCA 58.983 40.909 0.00 0.00 0.00 4.02
423 424 7.201609 GCTCTATATGTTCAACACATTTTCCGA 60.202 37.037 0.00 0.00 44.40 4.55
424 425 6.907212 GCTCTATATGTTCAACACATTTTCCG 59.093 38.462 0.00 0.00 44.40 4.30
425 426 7.989826 AGCTCTATATGTTCAACACATTTTCC 58.010 34.615 0.00 0.00 44.40 3.13
428 429 8.565896 TTGAGCTCTATATGTTCAACACATTT 57.434 30.769 16.19 0.00 44.40 2.32
432 433 5.525378 CCCTTGAGCTCTATATGTTCAACAC 59.475 44.000 16.19 0.00 0.00 3.32
434 435 5.059833 CCCCTTGAGCTCTATATGTTCAAC 58.940 45.833 16.19 0.00 0.00 3.18
435 436 4.721776 ACCCCTTGAGCTCTATATGTTCAA 59.278 41.667 16.19 0.00 0.00 2.69
436 437 4.298626 ACCCCTTGAGCTCTATATGTTCA 58.701 43.478 16.19 0.00 0.00 3.18
437 438 4.965200 ACCCCTTGAGCTCTATATGTTC 57.035 45.455 16.19 0.00 0.00 3.18
438 439 4.284746 GCTACCCCTTGAGCTCTATATGTT 59.715 45.833 16.19 0.00 35.73 2.71
439 440 3.835395 GCTACCCCTTGAGCTCTATATGT 59.165 47.826 16.19 9.34 35.73 2.29
440 441 3.196685 GGCTACCCCTTGAGCTCTATATG 59.803 52.174 16.19 3.52 38.79 1.78
441 442 3.445987 GGCTACCCCTTGAGCTCTATAT 58.554 50.000 16.19 0.00 38.79 0.86
443 444 1.723288 GGCTACCCCTTGAGCTCTAT 58.277 55.000 16.19 0.00 38.79 1.98
444 445 3.225608 GGCTACCCCTTGAGCTCTA 57.774 57.895 16.19 6.47 38.79 2.43
445 446 4.058434 GGCTACCCCTTGAGCTCT 57.942 61.111 16.19 0.00 38.79 4.09
455 456 2.117257 GAGAACTCTCGGGCTACCC 58.883 63.158 0.00 0.00 41.09 3.69
464 465 2.507324 GCCACCGCGAGAACTCTC 60.507 66.667 8.23 0.00 39.55 3.20
491 492 3.718210 CTCTCCCGTACTTGCCGCC 62.718 68.421 0.00 0.00 0.00 6.13
492 493 2.202756 CTCTCCCGTACTTGCCGC 60.203 66.667 0.00 0.00 0.00 6.53
493 494 1.433879 CTCTCTCCCGTACTTGCCG 59.566 63.158 0.00 0.00 0.00 5.69
494 495 0.683504 TCCTCTCTCCCGTACTTGCC 60.684 60.000 0.00 0.00 0.00 4.52
495 496 0.456628 GTCCTCTCTCCCGTACTTGC 59.543 60.000 0.00 0.00 0.00 4.01
496 497 2.131776 AGTCCTCTCTCCCGTACTTG 57.868 55.000 0.00 0.00 0.00 3.16
499 500 2.093021 ACAGTAGTCCTCTCTCCCGTAC 60.093 54.545 0.00 0.00 0.00 3.67
500 501 2.093075 CACAGTAGTCCTCTCTCCCGTA 60.093 54.545 0.00 0.00 0.00 4.02
501 502 0.993470 ACAGTAGTCCTCTCTCCCGT 59.007 55.000 0.00 0.00 0.00 5.28
503 504 1.107945 GCACAGTAGTCCTCTCTCCC 58.892 60.000 0.00 0.00 0.00 4.30
506 507 0.681564 CCGGCACAGTAGTCCTCTCT 60.682 60.000 0.00 0.00 0.00 3.10
507 508 0.966370 ACCGGCACAGTAGTCCTCTC 60.966 60.000 0.00 0.00 0.00 3.20
508 509 1.076906 ACCGGCACAGTAGTCCTCT 59.923 57.895 0.00 0.00 0.00 3.69
509 510 1.215647 CACCGGCACAGTAGTCCTC 59.784 63.158 0.00 0.00 0.00 3.71
510 511 2.943978 GCACCGGCACAGTAGTCCT 61.944 63.158 0.00 0.00 40.72 3.85
512 513 1.738099 CAGCACCGGCACAGTAGTC 60.738 63.158 0.00 0.00 44.61 2.59
539 540 3.793144 CTTGCTCCGCAGCCGTTC 61.793 66.667 0.00 0.00 46.26 3.95
543 544 4.096003 TACCCTTGCTCCGCAGCC 62.096 66.667 0.00 0.00 46.26 4.85
547 548 4.143333 TCGCTACCCTTGCTCCGC 62.143 66.667 0.00 0.00 0.00 5.54
548 549 2.202756 GTCGCTACCCTTGCTCCG 60.203 66.667 0.00 0.00 0.00 4.63
549 550 2.202756 CGTCGCTACCCTTGCTCC 60.203 66.667 0.00 0.00 0.00 4.70
550 551 2.202756 CCGTCGCTACCCTTGCTC 60.203 66.667 0.00 0.00 0.00 4.26
552 553 2.202756 CTCCGTCGCTACCCTTGC 60.203 66.667 0.00 0.00 0.00 4.01
553 554 2.202756 GCTCCGTCGCTACCCTTG 60.203 66.667 0.00 0.00 0.00 3.61
554 555 2.362632 AGCTCCGTCGCTACCCTT 60.363 61.111 0.00 0.00 38.76 3.95
555 556 3.141488 CAGCTCCGTCGCTACCCT 61.141 66.667 0.00 0.00 38.41 4.34
556 557 4.874977 GCAGCTCCGTCGCTACCC 62.875 72.222 0.00 0.00 38.41 3.69
558 559 4.175489 TCGCAGCTCCGTCGCTAC 62.175 66.667 0.00 0.00 38.41 3.58
559 560 3.877357 CTCGCAGCTCCGTCGCTA 61.877 66.667 0.00 0.00 38.41 4.26
561 562 4.560856 ATCTCGCAGCTCCGTCGC 62.561 66.667 0.00 0.00 0.00 5.19
562 563 2.653448 CATCTCGCAGCTCCGTCG 60.653 66.667 0.00 0.00 0.00 5.12
563 564 1.587613 GACATCTCGCAGCTCCGTC 60.588 63.158 0.00 0.00 0.00 4.79
564 565 2.492090 GACATCTCGCAGCTCCGT 59.508 61.111 0.00 0.00 0.00 4.69
566 567 0.179062 ATTGGACATCTCGCAGCTCC 60.179 55.000 0.00 0.00 0.00 4.70
568 569 0.179062 GGATTGGACATCTCGCAGCT 60.179 55.000 0.00 0.00 0.00 4.24
569 570 1.493950 CGGATTGGACATCTCGCAGC 61.494 60.000 0.00 0.00 0.00 5.25
570 571 0.877649 CCGGATTGGACATCTCGCAG 60.878 60.000 0.00 0.00 42.00 5.18
572 573 0.598680 CTCCGGATTGGACATCTCGC 60.599 60.000 3.57 0.00 43.74 5.03
573 574 0.032678 CCTCCGGATTGGACATCTCG 59.967 60.000 3.57 0.00 43.74 4.04
576 577 1.694150 TCATCCTCCGGATTGGACATC 59.306 52.381 14.34 0.00 43.74 3.06
578 579 1.578897 TTCATCCTCCGGATTGGACA 58.421 50.000 14.34 2.24 43.74 4.02
579 580 2.710096 TTTCATCCTCCGGATTGGAC 57.290 50.000 14.34 0.00 43.74 4.02
581 582 3.620488 TCTTTTTCATCCTCCGGATTGG 58.380 45.455 3.57 3.39 39.79 3.16
582 583 4.517285 TCTCTTTTTCATCCTCCGGATTG 58.483 43.478 3.57 3.48 39.79 2.67
584 585 3.135530 CCTCTCTTTTTCATCCTCCGGAT 59.864 47.826 3.57 0.00 44.21 4.18
585 586 2.501723 CCTCTCTTTTTCATCCTCCGGA 59.498 50.000 2.93 2.93 35.55 5.14
586 587 2.501723 TCCTCTCTTTTTCATCCTCCGG 59.498 50.000 0.00 0.00 0.00 5.14
588 589 4.714308 TCTCTCCTCTCTTTTTCATCCTCC 59.286 45.833 0.00 0.00 0.00 4.30
590 591 4.162131 GCTCTCTCCTCTCTTTTTCATCCT 59.838 45.833 0.00 0.00 0.00 3.24
592 593 5.083533 TGCTCTCTCCTCTCTTTTTCATC 57.916 43.478 0.00 0.00 0.00 2.92
593 594 5.495926 TTGCTCTCTCCTCTCTTTTTCAT 57.504 39.130 0.00 0.00 0.00 2.57
595 596 5.123661 CCATTTGCTCTCTCCTCTCTTTTTC 59.876 44.000 0.00 0.00 0.00 2.29
597 598 4.288105 TCCATTTGCTCTCTCCTCTCTTTT 59.712 41.667 0.00 0.00 0.00 2.27
598 599 3.843027 TCCATTTGCTCTCTCCTCTCTTT 59.157 43.478 0.00 0.00 0.00 2.52
600 601 2.765699 GTCCATTTGCTCTCTCCTCTCT 59.234 50.000 0.00 0.00 0.00 3.10
602 603 1.836802 GGTCCATTTGCTCTCTCCTCT 59.163 52.381 0.00 0.00 0.00 3.69
603 604 1.134250 GGGTCCATTTGCTCTCTCCTC 60.134 57.143 0.00 0.00 0.00 3.71
605 606 0.462759 CGGGTCCATTTGCTCTCTCC 60.463 60.000 0.00 0.00 0.00 3.71
607 608 1.201429 ACCGGGTCCATTTGCTCTCT 61.201 55.000 6.32 0.00 0.00 3.10
608 609 0.539986 TACCGGGTCCATTTGCTCTC 59.460 55.000 6.32 0.00 0.00 3.20
610 611 2.922740 TATACCGGGTCCATTTGCTC 57.077 50.000 6.32 0.00 0.00 4.26
611 612 2.289444 CGATATACCGGGTCCATTTGCT 60.289 50.000 6.32 0.00 0.00 3.91
612 613 2.073816 CGATATACCGGGTCCATTTGC 58.926 52.381 6.32 0.00 0.00 3.68
614 615 2.565834 CCTCGATATACCGGGTCCATTT 59.434 50.000 6.32 0.00 0.00 2.32
617 618 0.251474 CCCTCGATATACCGGGTCCA 60.251 60.000 6.32 0.00 31.89 4.02
618 619 0.969409 CCCCTCGATATACCGGGTCC 60.969 65.000 6.32 0.00 34.81 4.46
620 621 1.856323 ACCCCTCGATATACCGGGT 59.144 57.895 6.32 4.46 42.35 5.28
623 624 1.848652 ATCCACCCCTCGATATACCG 58.151 55.000 0.00 0.00 0.00 4.02
624 625 3.170717 TGAATCCACCCCTCGATATACC 58.829 50.000 0.00 0.00 0.00 2.73
626 627 4.844085 ACATTGAATCCACCCCTCGATATA 59.156 41.667 0.00 0.00 0.00 0.86
628 629 3.045634 ACATTGAATCCACCCCTCGATA 58.954 45.455 0.00 0.00 0.00 2.92
629 630 1.846439 ACATTGAATCCACCCCTCGAT 59.154 47.619 0.00 0.00 0.00 3.59
630 631 1.285280 ACATTGAATCCACCCCTCGA 58.715 50.000 0.00 0.00 0.00 4.04
631 632 3.275617 TTACATTGAATCCACCCCTCG 57.724 47.619 0.00 0.00 0.00 4.63
632 633 7.255942 CCATAAATTACATTGAATCCACCCCTC 60.256 40.741 0.00 0.00 0.00 4.30
634 635 6.741240 GCCATAAATTACATTGAATCCACCCC 60.741 42.308 0.00 0.00 0.00 4.95
635 636 6.223120 GCCATAAATTACATTGAATCCACCC 58.777 40.000 0.00 0.00 0.00 4.61
636 637 5.920273 CGCCATAAATTACATTGAATCCACC 59.080 40.000 0.00 0.00 0.00 4.61
637 638 6.734137 TCGCCATAAATTACATTGAATCCAC 58.266 36.000 0.00 0.00 0.00 4.02
638 639 6.545666 ACTCGCCATAAATTACATTGAATCCA 59.454 34.615 0.00 0.00 0.00 3.41
639 640 6.970484 ACTCGCCATAAATTACATTGAATCC 58.030 36.000 0.00 0.00 0.00 3.01
640 641 9.599322 CTAACTCGCCATAAATTACATTGAATC 57.401 33.333 0.00 0.00 0.00 2.52
641 642 8.567948 CCTAACTCGCCATAAATTACATTGAAT 58.432 33.333 0.00 0.00 0.00 2.57
642 643 7.468084 GCCTAACTCGCCATAAATTACATTGAA 60.468 37.037 0.00 0.00 0.00 2.69
643 644 6.017440 GCCTAACTCGCCATAAATTACATTGA 60.017 38.462 0.00 0.00 0.00 2.57
644 645 6.142817 GCCTAACTCGCCATAAATTACATTG 58.857 40.000 0.00 0.00 0.00 2.82
645 646 5.240844 GGCCTAACTCGCCATAAATTACATT 59.759 40.000 0.00 0.00 46.27 2.71
647 648 4.131596 GGCCTAACTCGCCATAAATTACA 58.868 43.478 0.00 0.00 46.27 2.41
648 649 4.744136 GGCCTAACTCGCCATAAATTAC 57.256 45.455 0.00 0.00 46.27 1.89
658 659 1.226717 CTCGACAGGCCTAACTCGC 60.227 63.158 3.98 0.00 0.00 5.03
661 662 2.754002 GTTAGACTCGACAGGCCTAACT 59.246 50.000 3.98 0.00 37.16 2.24
662 663 2.490903 TGTTAGACTCGACAGGCCTAAC 59.509 50.000 3.98 3.26 38.77 2.34
663 664 2.799017 TGTTAGACTCGACAGGCCTAA 58.201 47.619 3.98 0.00 0.00 2.69
664 665 2.502142 TGTTAGACTCGACAGGCCTA 57.498 50.000 3.98 0.00 0.00 3.93
665 666 1.853963 ATGTTAGACTCGACAGGCCT 58.146 50.000 0.00 0.00 0.00 5.19
668 669 3.376234 TCCGTTATGTTAGACTCGACAGG 59.624 47.826 0.00 0.00 0.00 4.00
670 671 3.181517 CGTCCGTTATGTTAGACTCGACA 60.182 47.826 0.00 0.00 0.00 4.35
671 672 3.349176 CGTCCGTTATGTTAGACTCGAC 58.651 50.000 0.00 0.00 0.00 4.20
673 674 2.107178 GCGTCCGTTATGTTAGACTCG 58.893 52.381 0.00 0.00 0.00 4.18
674 675 2.107178 CGCGTCCGTTATGTTAGACTC 58.893 52.381 0.00 0.00 0.00 3.36
675 676 2.184385 CGCGTCCGTTATGTTAGACT 57.816 50.000 0.00 0.00 0.00 3.24
687 688 1.131826 GAATGTCCAAACGCGTCCG 59.868 57.895 14.44 6.54 41.14 4.79
689 690 1.263217 ACAAGAATGTCCAAACGCGTC 59.737 47.619 14.44 0.00 33.41 5.19
690 691 1.305201 ACAAGAATGTCCAAACGCGT 58.695 45.000 5.58 5.58 33.41 6.01
691 692 3.485216 GGATACAAGAATGTCCAAACGCG 60.485 47.826 3.53 3.53 41.05 6.01
692 693 3.485216 CGGATACAAGAATGTCCAAACGC 60.485 47.826 0.00 0.00 41.05 4.84
693 694 3.682858 ACGGATACAAGAATGTCCAAACG 59.317 43.478 0.00 0.00 41.05 3.60
694 695 5.411669 AGAACGGATACAAGAATGTCCAAAC 59.588 40.000 0.00 0.00 41.05 2.93
695 696 5.556915 AGAACGGATACAAGAATGTCCAAA 58.443 37.500 0.00 0.00 41.05 3.28
696 697 5.160607 AGAACGGATACAAGAATGTCCAA 57.839 39.130 0.00 0.00 41.05 3.53
698 699 9.490379 AAATATAGAACGGATACAAGAATGTCC 57.510 33.333 0.00 0.00 41.05 4.02
704 705 9.529325 CAACTCAAATATAGAACGGATACAAGA 57.471 33.333 0.00 0.00 0.00 3.02
705 706 8.765219 CCAACTCAAATATAGAACGGATACAAG 58.235 37.037 0.00 0.00 0.00 3.16
706 707 8.479689 TCCAACTCAAATATAGAACGGATACAA 58.520 33.333 0.00 0.00 0.00 2.41
707 708 8.014070 TCCAACTCAAATATAGAACGGATACA 57.986 34.615 0.00 0.00 0.00 2.29
710 711 8.647796 TGTATCCAACTCAAATATAGAACGGAT 58.352 33.333 0.00 0.00 34.12 4.18
712 713 8.657074 TTGTATCCAACTCAAATATAGAACGG 57.343 34.615 0.00 0.00 0.00 4.44
719 720 8.786826 TCGACTTTTGTATCCAACTCAAATAT 57.213 30.769 0.00 0.00 32.41 1.28
720 721 8.786826 ATCGACTTTTGTATCCAACTCAAATA 57.213 30.769 0.00 0.00 32.41 1.40
723 724 5.642063 GGATCGACTTTTGTATCCAACTCAA 59.358 40.000 0.00 0.00 37.46 3.02
724 725 5.175859 GGATCGACTTTTGTATCCAACTCA 58.824 41.667 0.00 0.00 37.46 3.41
725 726 5.175859 TGGATCGACTTTTGTATCCAACTC 58.824 41.667 0.00 0.00 41.85 3.01
727 728 5.673818 GCTTGGATCGACTTTTGTATCCAAC 60.674 44.000 10.73 5.91 45.44 3.77
729 730 3.938963 GCTTGGATCGACTTTTGTATCCA 59.061 43.478 0.00 0.00 42.62 3.41
730 731 3.938963 TGCTTGGATCGACTTTTGTATCC 59.061 43.478 0.00 0.00 37.82 2.59
732 733 6.515272 AAATGCTTGGATCGACTTTTGTAT 57.485 33.333 0.00 0.00 0.00 2.29
733 734 5.957842 AAATGCTTGGATCGACTTTTGTA 57.042 34.783 0.00 0.00 0.00 2.41
734 735 4.853924 AAATGCTTGGATCGACTTTTGT 57.146 36.364 0.00 0.00 0.00 2.83
735 736 6.524586 GTCTTAAATGCTTGGATCGACTTTTG 59.475 38.462 0.00 0.00 0.00 2.44
739 740 3.865745 CGTCTTAAATGCTTGGATCGACT 59.134 43.478 0.00 0.00 0.00 4.18
740 741 3.544244 GCGTCTTAAATGCTTGGATCGAC 60.544 47.826 0.00 0.00 36.91 4.20
743 744 3.242870 CCTGCGTCTTAAATGCTTGGATC 60.243 47.826 0.00 0.00 40.79 3.36
745 746 2.083774 CCTGCGTCTTAAATGCTTGGA 58.916 47.619 0.00 0.00 40.79 3.53
746 747 1.812571 ACCTGCGTCTTAAATGCTTGG 59.187 47.619 0.00 0.00 40.79 3.61
747 748 2.226437 ACACCTGCGTCTTAAATGCTTG 59.774 45.455 0.00 0.00 40.79 4.01
748 749 2.484264 GACACCTGCGTCTTAAATGCTT 59.516 45.455 0.00 0.00 40.79 3.91
749 750 2.076863 GACACCTGCGTCTTAAATGCT 58.923 47.619 0.00 0.00 40.79 3.79
750 751 2.076863 AGACACCTGCGTCTTAAATGC 58.923 47.619 0.00 0.00 43.84 3.56
751 752 2.345641 CGAGACACCTGCGTCTTAAATG 59.654 50.000 0.00 0.00 46.26 2.32
753 754 1.610038 TCGAGACACCTGCGTCTTAAA 59.390 47.619 0.00 0.00 46.26 1.52
754 755 1.241165 TCGAGACACCTGCGTCTTAA 58.759 50.000 0.00 0.00 46.26 1.85
755 756 1.132453 CATCGAGACACCTGCGTCTTA 59.868 52.381 0.00 0.00 46.26 2.10
756 757 0.109086 CATCGAGACACCTGCGTCTT 60.109 55.000 0.00 0.00 46.26 3.01
758 759 1.517257 CCATCGAGACACCTGCGTC 60.517 63.158 0.00 0.00 36.08 5.19
759 760 2.573869 CCATCGAGACACCTGCGT 59.426 61.111 0.00 0.00 0.00 5.24
760 761 2.202797 CCCATCGAGACACCTGCG 60.203 66.667 0.00 0.00 0.00 5.18
761 762 0.321653 AAACCCATCGAGACACCTGC 60.322 55.000 0.00 0.00 0.00 4.85
762 763 2.185004 AAAACCCATCGAGACACCTG 57.815 50.000 0.00 0.00 0.00 4.00
763 764 2.951229 AAAAACCCATCGAGACACCT 57.049 45.000 0.00 0.00 0.00 4.00
793 794 1.823899 GGATGGCCCGGTCAATGAC 60.824 63.158 4.51 4.51 0.00 3.06
805 806 2.044946 ACTCAAAGGGCGGATGGC 60.045 61.111 0.00 0.00 42.51 4.40
806 807 1.750399 CCACTCAAAGGGCGGATGG 60.750 63.158 0.00 0.00 0.00 3.51
807 808 0.745845 CTCCACTCAAAGGGCGGATG 60.746 60.000 0.00 0.00 0.00 3.51
808 809 1.201429 ACTCCACTCAAAGGGCGGAT 61.201 55.000 0.00 0.00 0.00 4.18
809 810 0.543410 TACTCCACTCAAAGGGCGGA 60.543 55.000 0.00 0.00 0.00 5.54
810 811 0.541863 ATACTCCACTCAAAGGGCGG 59.458 55.000 0.00 0.00 0.00 6.13
812 813 2.483188 CCGTATACTCCACTCAAAGGGC 60.483 54.545 0.56 0.00 0.00 5.19
814 815 2.102588 CCCCGTATACTCCACTCAAAGG 59.897 54.545 0.56 0.00 0.00 3.11
817 818 2.104967 CACCCCGTATACTCCACTCAA 58.895 52.381 0.56 0.00 0.00 3.02
820 821 1.047034 GGCACCCCGTATACTCCACT 61.047 60.000 0.56 0.00 0.00 4.00
821 822 1.444672 GGCACCCCGTATACTCCAC 59.555 63.158 0.56 0.00 0.00 4.02
822 823 3.959462 GGCACCCCGTATACTCCA 58.041 61.111 0.56 0.00 0.00 3.86
835 836 2.045926 AATGTGAGAGCCGGGCAC 60.046 61.111 23.09 15.87 0.00 5.01
837 838 3.512516 GCAATGTGAGAGCCGGGC 61.513 66.667 12.11 12.11 0.00 6.13
838 839 2.046023 TGCAATGTGAGAGCCGGG 60.046 61.111 2.18 0.00 0.00 5.73
839 840 2.743752 CGTGCAATGTGAGAGCCGG 61.744 63.158 0.00 0.00 0.00 6.13
840 841 2.029288 ACGTGCAATGTGAGAGCCG 61.029 57.895 0.00 0.00 32.58 5.52
841 842 3.972227 ACGTGCAATGTGAGAGCC 58.028 55.556 0.00 0.00 32.58 4.70
848 849 2.668212 CCGGGTCACGTGCAATGT 60.668 61.111 11.67 0.00 42.24 2.71
851 852 4.612412 GGTCCGGGTCACGTGCAA 62.612 66.667 11.67 0.00 42.24 4.08
853 854 4.612412 TTGGTCCGGGTCACGTGC 62.612 66.667 11.67 6.03 42.24 5.34
854 855 2.663852 GTTGGTCCGGGTCACGTG 60.664 66.667 9.94 9.94 42.24 4.49
902 903 0.322456 GTGGTGGGCTTGTGCTGATA 60.322 55.000 0.00 0.00 39.59 2.15
948 957 2.737252 CGGGGTTTCTCTTTTCTTCTCG 59.263 50.000 0.00 0.00 0.00 4.04
961 970 2.047179 AAGAGCGAGCGGGGTTTC 60.047 61.111 0.00 0.00 0.00 2.78
1494 1507 2.171448 CCTGGCATAGAGGTTAAGCAGT 59.829 50.000 7.52 0.00 0.00 4.40
1568 1581 1.513158 CTCCACGCGACCAGATTCT 59.487 57.895 15.93 0.00 0.00 2.40
1613 1626 1.426041 CGCTTCGTTAACCATCCCCG 61.426 60.000 0.00 0.00 0.00 5.73
1633 1646 0.324943 ATGTCCCGAAACAGGTCCAG 59.675 55.000 0.00 0.00 31.50 3.86
1670 1683 1.097547 CATTGTGACCTCATCCGGGC 61.098 60.000 0.00 0.00 0.00 6.13
1775 1788 0.174389 GCTCAGCTCAAGATCGACCA 59.826 55.000 0.00 0.00 0.00 4.02
1851 1864 2.569059 CTCTCCACCATCGCATCAAAT 58.431 47.619 0.00 0.00 0.00 2.32
2058 2071 6.389830 ACAAAAATGAACTGTCAGTGCATA 57.610 33.333 24.22 0.05 43.61 3.14
2104 2117 5.467705 AGTCATGAGTCAAGTTTACGGTAC 58.532 41.667 0.00 0.00 0.00 3.34
2257 2270 3.689649 CACCTTTTAGGGGAAGAATGACG 59.310 47.826 0.00 0.00 43.10 4.35
2259 2272 3.075283 TGCACCTTTTAGGGGAAGAATGA 59.925 43.478 0.00 0.00 43.10 2.57
2290 2303 4.965532 AGCACTACACTAGATGAGGGAATT 59.034 41.667 0.00 0.00 30.54 2.17
2371 2384 4.832248 TCATGAAAGTCGGTAAGCAATCT 58.168 39.130 0.00 0.00 0.00 2.40
2372 2385 5.504665 CCATCATGAAAGTCGGTAAGCAATC 60.505 44.000 0.00 0.00 0.00 2.67
2407 2422 1.623811 GTACTGCCTTCCCTCAAGTCA 59.376 52.381 0.00 0.00 0.00 3.41
2444 2459 5.509498 AGCAAACCTGAATTCCTGCTTATA 58.491 37.500 2.27 0.00 36.79 0.98
2464 2479 5.514274 AAGATTCGGAAAACAGAAAAGCA 57.486 34.783 0.00 0.00 0.00 3.91
2640 2655 7.678171 AGTTTGATACCTTTACAAATCCCCATT 59.322 33.333 0.00 0.00 36.25 3.16
2774 2797 7.807977 AATTCGTAACTCCATAGATGCAAAT 57.192 32.000 0.00 0.00 0.00 2.32
2936 2959 6.327626 ACTTGTCCTCCATATGCAATAGTAGT 59.672 38.462 0.00 0.00 28.50 2.73
2937 2960 6.763355 ACTTGTCCTCCATATGCAATAGTAG 58.237 40.000 0.00 0.00 28.50 2.57
2938 2961 6.326323 TGACTTGTCCTCCATATGCAATAGTA 59.674 38.462 0.00 0.00 28.50 1.82
3251 3287 5.889853 ACGTAGTTCCAATACCTCTGATGTA 59.110 40.000 0.00 0.00 37.78 2.29
3328 3367 4.479786 AGACATTAGGAGGTTCTGCTTC 57.520 45.455 0.00 0.00 33.39 3.86
3360 3399 0.323178 TGACTCGGTCCTGGGACTAC 60.323 60.000 17.82 3.35 44.04 2.73
3361 3400 0.629596 ATGACTCGGTCCTGGGACTA 59.370 55.000 17.82 7.29 44.04 2.59
3381 3424 1.002366 GCATGGAGTTAGCACAGTCG 58.998 55.000 0.00 0.00 0.00 4.18
3593 3659 5.659048 CTTTCTTACTCGAAAGCTGTTGT 57.341 39.130 0.00 0.00 42.17 3.32
3950 4170 4.271687 CACACAACAACTTTCGAGTAAGC 58.728 43.478 0.00 0.00 0.00 3.09
4000 4220 1.427368 TCAATTGTACCTGGCCCAAGT 59.573 47.619 0.00 0.00 0.00 3.16
4047 4267 0.191064 TGCCCTCCCATACCTCCTAG 59.809 60.000 0.00 0.00 0.00 3.02
4087 4307 4.530875 ACATCCAGATAGCCAAGAAAAGG 58.469 43.478 0.00 0.00 0.00 3.11
4408 4634 3.190535 GTGAAAGTGGTGGCATCGTATTT 59.809 43.478 0.00 0.00 0.00 1.40
4422 4648 8.971321 CCAACTTGAATGATTAAAGTGAAAGTG 58.029 33.333 8.64 3.41 34.46 3.16
4459 4685 6.410853 GGATCAAGAAGAAAATCCCTATCCCA 60.411 42.308 0.00 0.00 33.06 4.37
4557 4785 6.378564 TCAAAACTGGACCAGTAAACAATTGA 59.621 34.615 27.37 22.84 44.62 2.57
4574 4802 6.187125 AGATTCATTCCATCGTCAAAACTG 57.813 37.500 0.00 0.00 0.00 3.16
4963 5214 4.082845 CCGATAGAAGGGAGAGATAGCAA 58.917 47.826 0.00 0.00 39.76 3.91
5065 5317 4.147219 AGCTTTTCTGTTTTCCGAATCG 57.853 40.909 0.00 0.00 0.00 3.34
5240 5702 2.995283 TGAGCATGCAAGCTGATAAGT 58.005 42.857 22.97 0.00 46.75 2.24
6164 6626 3.223157 GTTACGCAATCACCAAAAGTCG 58.777 45.455 0.00 0.00 0.00 4.18
6396 6858 6.481954 AGCTTGTTTTCTGGTTAGATAACG 57.518 37.500 0.00 0.00 43.52 3.18
6461 6924 0.935898 CAATGCAGTCGCCATCTCTC 59.064 55.000 0.00 0.00 37.32 3.20
6617 7111 0.179048 TTTGCCTGGATCGCGATGAT 60.179 50.000 29.09 2.35 41.06 2.45
6622 7116 0.305922 GAGATTTTGCCTGGATCGCG 59.694 55.000 0.00 0.00 0.00 5.87
6625 7119 4.704057 AGAACTTGAGATTTTGCCTGGATC 59.296 41.667 0.00 0.00 0.00 3.36
6629 7123 5.689068 GTGAAAGAACTTGAGATTTTGCCTG 59.311 40.000 0.00 0.00 0.00 4.85
6784 7388 1.492176 ACATCTCCAGGGCCTTGTATG 59.508 52.381 14.60 15.46 0.00 2.39
6831 7435 2.038952 CACAAGTCCCTTCCATCACTCA 59.961 50.000 0.00 0.00 0.00 3.41
6840 7444 2.673368 CGTAATCTGCACAAGTCCCTTC 59.327 50.000 0.00 0.00 0.00 3.46
6851 7455 1.202099 TGGAACCCCCGTAATCTGCA 61.202 55.000 0.00 0.00 37.93 4.41
6941 7545 3.696548 CACTAGCACTGGAGATACAGACA 59.303 47.826 0.00 0.00 40.97 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.