Multiple sequence alignment - TraesCS3D01G331600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G331600 chr3D 100.000 4120 0 0 2851 6970 443711708 443707589 0.000000e+00 7609
1 TraesCS3D01G331600 chr3D 100.000 1912 0 0 756 2667 443713803 443711892 0.000000e+00 3531
2 TraesCS3D01G331600 chr3D 100.000 635 0 0 7188 7822 443707371 443706737 0.000000e+00 1173
3 TraesCS3D01G331600 chr3D 100.000 495 0 0 1 495 443714558 443714064 0.000000e+00 915
4 TraesCS3D01G331600 chr3A 94.007 3020 121 27 3981 6956 584933966 584930963 0.000000e+00 4519
5 TraesCS3D01G331600 chr3A 97.790 1131 24 1 2852 3982 584935257 584934128 0.000000e+00 1949
6 TraesCS3D01G331600 chr3A 90.937 971 39 16 756 1680 584937256 584936289 0.000000e+00 1260
7 TraesCS3D01G331600 chr3A 92.601 892 34 10 1784 2667 584936214 584935347 0.000000e+00 1253
8 TraesCS3D01G331600 chr3A 90.312 640 48 7 7188 7817 584930909 584930274 0.000000e+00 826
9 TraesCS3D01G331600 chr3A 96.070 229 4 1 262 490 584937542 584937319 1.240000e-97 368
10 TraesCS3D01G331600 chr3B 96.537 1819 45 4 5154 6969 581704127 581702324 0.000000e+00 2994
11 TraesCS3D01G331600 chr3B 98.116 1168 20 2 3103 4268 581706336 581705169 0.000000e+00 2034
12 TraesCS3D01G331600 chr3B 93.333 900 39 5 4265 5153 581705047 581704158 0.000000e+00 1310
13 TraesCS3D01G331600 chr3B 95.878 655 27 0 2013 2667 581707488 581706834 0.000000e+00 1061
14 TraesCS3D01G331600 chr3B 85.654 948 44 30 785 1680 581710026 581709119 0.000000e+00 913
15 TraesCS3D01G331600 chr3B 96.197 447 13 4 7188 7632 581702255 581701811 0.000000e+00 728
16 TraesCS3D01G331600 chr3B 96.797 281 7 2 2851 3130 581706772 581706493 1.190000e-127 468
17 TraesCS3D01G331600 chr3B 95.217 230 4 2 264 493 581710350 581710128 2.680000e-94 357
18 TraesCS3D01G331600 chr3B 95.028 181 8 1 7643 7822 581687430 581687250 4.620000e-72 283
19 TraesCS3D01G331600 chr3B 89.143 175 14 5 1690 1859 581709065 581708891 6.150000e-51 213
20 TraesCS3D01G331600 chr3B 91.000 100 1 4 1857 1950 581707711 581707614 2.290000e-25 128
21 TraesCS3D01G331600 chr1D 80.201 399 71 6 3764 4162 403051502 403051892 7.680000e-75 292
22 TraesCS3D01G331600 chr1A 80.000 400 71 6 3764 4162 498166138 498166529 3.570000e-73 287
23 TraesCS3D01G331600 chr1A 73.626 637 135 22 3077 3701 498165239 498165854 1.710000e-51 215
24 TraesCS3D01G331600 chr1B 79.500 400 73 6 3764 4162 541002790 541003181 7.730000e-70 276
25 TraesCS3D01G331600 chr1B 80.663 181 33 2 4370 4550 541003293 541003471 1.060000e-28 139


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G331600 chr3D 443706737 443714558 7821 True 3307.000000 7609 100.0000 1 7822 4 chr3D.!!$R1 7821
1 TraesCS3D01G331600 chr3A 584930274 584937542 7268 True 1695.833333 4519 93.6195 262 7817 6 chr3A.!!$R1 7555
2 TraesCS3D01G331600 chr3B 581701811 581710350 8539 True 1020.600000 2994 93.7872 264 7632 10 chr3B.!!$R2 7368
3 TraesCS3D01G331600 chr1A 498165239 498166529 1290 False 251.000000 287 76.8130 3077 4162 2 chr1A.!!$F1 1085
4 TraesCS3D01G331600 chr1B 541002790 541003471 681 False 207.500000 276 80.0815 3764 4550 2 chr1B.!!$F1 786

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
154 155 0.032615 TCTGGTTGGCTGTGGGTTTT 60.033 50.000 0.00 0.00 0.00 2.43 F
254 255 0.179032 TTTCTGGACGTGTGGTGCAT 60.179 50.000 0.00 0.00 46.50 3.96 F
792 793 0.458889 GCAGCAGCAGAGAGAGACAG 60.459 60.000 0.00 0.00 41.58 3.51 F
793 794 0.458889 CAGCAGCAGAGAGAGACAGC 60.459 60.000 0.00 0.00 0.00 4.40 F
836 839 0.617535 TCCGAAGCCATTCCTCTCCA 60.618 55.000 0.00 0.00 31.21 3.86 F
1228 1261 1.413077 GGAGGAAGATCGGTCCGAAAT 59.587 52.381 19.76 6.94 39.99 2.17 F
1451 1521 1.741770 CTCCGCCGGTGAGGAAAAG 60.742 63.158 18.79 0.00 45.00 2.27 F
1655 1726 2.142356 TTCCCCATCACGCATGAAAT 57.858 45.000 0.00 0.00 38.69 2.17 F
1683 1795 2.546368 TGGACGTTGTTTTCATCCTTCG 59.454 45.455 0.00 0.00 30.30 3.79 F
1994 3385 2.900122 AGAACGAAAACATGGCATCG 57.100 45.000 12.73 12.73 40.90 3.84 F
1998 3389 3.363341 ACGAAAACATGGCATCGTTTT 57.637 38.095 26.19 26.19 45.33 2.43 F
3927 5732 1.301677 CGAGGCTTTGCAGGAGAACC 61.302 60.000 3.58 0.00 0.00 3.62 F
4888 6985 0.673985 GGAAGCCACAAAGAACCCAC 59.326 55.000 0.00 0.00 0.00 4.61 F
5233 7375 0.033504 GAGGAGACGGCACTTCACAA 59.966 55.000 0.00 0.00 0.00 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1525 1596 0.037975 CAACCCTGGAGTGCAAATGC 60.038 55.000 0.00 0.0 42.50 3.56 R
2007 3398 0.322546 AAGACTGAAACGATGCCCCC 60.323 55.000 0.00 0.0 0.00 5.40 R
2008 3399 2.396590 TAAGACTGAAACGATGCCCC 57.603 50.000 0.00 0.0 0.00 5.80 R
2009 3400 4.965119 ATTTAAGACTGAAACGATGCCC 57.035 40.909 0.00 0.0 0.00 5.36 R
2148 3541 6.881065 GGAGCATATGACAGATTTAATGCCTA 59.119 38.462 6.97 0.0 40.38 3.93 R
2324 3717 7.631717 ACTCCTGGTTTGAATTAAAGATAGC 57.368 36.000 0.00 0.0 0.00 2.97 R
3405 4983 3.248602 GCATCCCTGTACGATGATTTGAC 59.751 47.826 11.94 0.0 39.64 3.18 R
3677 5261 0.178992 TGTTTCCAAGACAGCCCAGG 60.179 55.000 0.00 0.0 0.00 4.45 R
3707 5291 9.846248 GTTACAGCAATACTTCAATCTGATTTT 57.154 29.630 0.00 0.0 0.00 1.82 R
3927 5732 0.175760 TCTCAGGAATTCTTCGCCCG 59.824 55.000 5.23 0.0 0.00 6.13 R
4321 6416 6.040278 TGCAGAAATGAACAACTATGGTTTGA 59.960 34.615 0.00 0.0 32.73 2.69 R
5214 7356 0.033504 TTGTGAAGTGCCGTCTCCTC 59.966 55.000 0.00 0.0 0.00 3.71 R
6760 8926 1.067776 GTGGACAGTGGTACGAAGAGG 60.068 57.143 0.00 0.0 0.00 3.69 R
7351 9518 1.055849 TGAGCTCCACCAAGCAACTA 58.944 50.000 12.15 0.0 45.00 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.082192 TTCGAATAGCGTCGGCAC 57.918 55.556 0.00 0.00 43.41 5.01
18 19 1.213275 TTCGAATAGCGTCGGCACA 59.787 52.632 0.00 0.00 43.41 4.57
19 20 0.179121 TTCGAATAGCGTCGGCACAT 60.179 50.000 0.00 0.00 43.41 3.21
20 21 0.869880 TCGAATAGCGTCGGCACATG 60.870 55.000 7.49 0.00 43.41 3.21
21 22 1.145759 CGAATAGCGTCGGCACATGT 61.146 55.000 0.00 0.00 43.41 3.21
22 23 1.006832 GAATAGCGTCGGCACATGTT 58.993 50.000 0.00 0.00 43.41 2.71
23 24 1.396996 GAATAGCGTCGGCACATGTTT 59.603 47.619 0.00 0.00 43.41 2.83
24 25 1.448985 ATAGCGTCGGCACATGTTTT 58.551 45.000 0.00 0.00 43.41 2.43
25 26 1.231221 TAGCGTCGGCACATGTTTTT 58.769 45.000 0.00 0.00 43.41 1.94
26 27 1.231221 AGCGTCGGCACATGTTTTTA 58.769 45.000 0.00 0.00 43.41 1.52
27 28 1.810151 AGCGTCGGCACATGTTTTTAT 59.190 42.857 0.00 0.00 43.41 1.40
28 29 2.227865 AGCGTCGGCACATGTTTTTATT 59.772 40.909 0.00 0.00 43.41 1.40
29 30 2.983803 GCGTCGGCACATGTTTTTATTT 59.016 40.909 0.00 0.00 39.62 1.40
30 31 4.083217 AGCGTCGGCACATGTTTTTATTTA 60.083 37.500 0.00 0.00 43.41 1.40
31 32 4.796312 GCGTCGGCACATGTTTTTATTTAT 59.204 37.500 0.00 0.00 39.62 1.40
32 33 5.287513 GCGTCGGCACATGTTTTTATTTATT 59.712 36.000 0.00 0.00 39.62 1.40
33 34 6.505732 GCGTCGGCACATGTTTTTATTTATTC 60.506 38.462 0.00 0.00 39.62 1.75
34 35 6.020995 CGTCGGCACATGTTTTTATTTATTCC 60.021 38.462 0.00 0.00 0.00 3.01
35 36 7.033185 GTCGGCACATGTTTTTATTTATTCCT 58.967 34.615 0.00 0.00 0.00 3.36
36 37 7.220108 GTCGGCACATGTTTTTATTTATTCCTC 59.780 37.037 0.00 0.00 0.00 3.71
37 38 7.122055 TCGGCACATGTTTTTATTTATTCCTCT 59.878 33.333 0.00 0.00 0.00 3.69
38 39 7.759433 CGGCACATGTTTTTATTTATTCCTCTT 59.241 33.333 0.00 0.00 0.00 2.85
39 40 8.872845 GGCACATGTTTTTATTTATTCCTCTTG 58.127 33.333 0.00 0.00 0.00 3.02
40 41 8.382875 GCACATGTTTTTATTTATTCCTCTTGC 58.617 33.333 0.00 0.00 0.00 4.01
41 42 9.643693 CACATGTTTTTATTTATTCCTCTTGCT 57.356 29.630 0.00 0.00 0.00 3.91
42 43 9.860898 ACATGTTTTTATTTATTCCTCTTGCTC 57.139 29.630 0.00 0.00 0.00 4.26
48 49 9.444600 TTTTATTTATTCCTCTTGCTCTAACGT 57.555 29.630 0.00 0.00 0.00 3.99
50 51 9.525409 TTATTTATTCCTCTTGCTCTAACGTAC 57.475 33.333 0.00 0.00 0.00 3.67
51 52 6.770746 TTATTCCTCTTGCTCTAACGTACT 57.229 37.500 0.00 0.00 0.00 2.73
52 53 4.436242 TTCCTCTTGCTCTAACGTACTG 57.564 45.455 0.00 0.00 0.00 2.74
53 54 3.682696 TCCTCTTGCTCTAACGTACTGA 58.317 45.455 0.00 0.00 0.00 3.41
54 55 3.439476 TCCTCTTGCTCTAACGTACTGAC 59.561 47.826 0.00 0.00 0.00 3.51
55 56 3.190744 CCTCTTGCTCTAACGTACTGACA 59.809 47.826 0.00 0.00 0.00 3.58
56 57 4.407818 CTCTTGCTCTAACGTACTGACAG 58.592 47.826 0.00 0.00 0.00 3.51
57 58 3.819337 TCTTGCTCTAACGTACTGACAGT 59.181 43.478 13.68 13.68 0.00 3.55
58 59 4.277672 TCTTGCTCTAACGTACTGACAGTT 59.722 41.667 14.50 0.00 0.00 3.16
59 60 3.897325 TGCTCTAACGTACTGACAGTTG 58.103 45.455 14.50 9.55 0.00 3.16
60 61 3.243336 GCTCTAACGTACTGACAGTTGG 58.757 50.000 14.50 8.62 0.00 3.77
61 62 3.834610 CTCTAACGTACTGACAGTTGGG 58.165 50.000 14.50 6.08 0.00 4.12
62 63 2.029649 TCTAACGTACTGACAGTTGGGC 60.030 50.000 14.50 1.64 0.00 5.36
63 64 0.250166 AACGTACTGACAGTTGGGCC 60.250 55.000 14.50 0.00 0.00 5.80
64 65 1.375523 CGTACTGACAGTTGGGCCC 60.376 63.158 17.59 17.59 0.00 5.80
65 66 1.827399 CGTACTGACAGTTGGGCCCT 61.827 60.000 25.70 0.15 0.00 5.19
66 67 0.400594 GTACTGACAGTTGGGCCCTT 59.599 55.000 25.70 5.67 0.00 3.95
67 68 0.400213 TACTGACAGTTGGGCCCTTG 59.600 55.000 25.70 20.36 0.00 3.61
68 69 1.151450 CTGACAGTTGGGCCCTTGT 59.849 57.895 25.70 23.46 0.00 3.16
69 70 0.400213 CTGACAGTTGGGCCCTTGTA 59.600 55.000 25.70 0.00 0.00 2.41
70 71 0.400213 TGACAGTTGGGCCCTTGTAG 59.600 55.000 25.70 11.72 0.00 2.74
71 72 0.960861 GACAGTTGGGCCCTTGTAGC 60.961 60.000 25.70 4.12 0.00 3.58
72 73 1.380302 CAGTTGGGCCCTTGTAGCT 59.620 57.895 25.70 6.89 0.00 3.32
73 74 0.962356 CAGTTGGGCCCTTGTAGCTG 60.962 60.000 25.70 16.19 0.00 4.24
74 75 2.035626 TTGGGCCCTTGTAGCTGC 59.964 61.111 25.70 0.00 0.00 5.25
75 76 3.918253 TTGGGCCCTTGTAGCTGCG 62.918 63.158 25.70 0.00 0.00 5.18
79 80 2.742372 CCCTTGTAGCTGCGCGTT 60.742 61.111 8.43 0.00 0.00 4.84
80 81 1.447140 CCCTTGTAGCTGCGCGTTA 60.447 57.895 8.43 0.00 0.00 3.18
81 82 1.017177 CCCTTGTAGCTGCGCGTTAA 61.017 55.000 8.43 0.00 0.00 2.01
82 83 0.793861 CCTTGTAGCTGCGCGTTAAA 59.206 50.000 8.43 0.00 0.00 1.52
83 84 1.463528 CCTTGTAGCTGCGCGTTAAAC 60.464 52.381 8.43 0.64 0.00 2.01
84 85 0.513820 TTGTAGCTGCGCGTTAAACC 59.486 50.000 8.43 0.00 0.00 3.27
85 86 0.320073 TGTAGCTGCGCGTTAAACCT 60.320 50.000 8.43 0.00 0.00 3.50
86 87 0.094730 GTAGCTGCGCGTTAAACCTG 59.905 55.000 8.43 0.00 0.00 4.00
87 88 1.017177 TAGCTGCGCGTTAAACCTGG 61.017 55.000 8.43 0.00 0.00 4.45
88 89 2.322081 GCTGCGCGTTAAACCTGGA 61.322 57.895 8.43 0.00 0.00 3.86
89 90 1.644786 GCTGCGCGTTAAACCTGGAT 61.645 55.000 8.43 0.00 0.00 3.41
90 91 1.647346 CTGCGCGTTAAACCTGGATA 58.353 50.000 8.43 0.00 0.00 2.59
91 92 2.210116 CTGCGCGTTAAACCTGGATAT 58.790 47.619 8.43 0.00 0.00 1.63
92 93 3.386486 CTGCGCGTTAAACCTGGATATA 58.614 45.455 8.43 0.00 0.00 0.86
93 94 3.125316 TGCGCGTTAAACCTGGATATAC 58.875 45.455 8.43 0.00 0.00 1.47
94 95 2.477754 GCGCGTTAAACCTGGATATACC 59.522 50.000 8.43 0.00 39.54 2.73
129 130 9.739276 TTCTAGAAAATATATTATGCCAGGTGG 57.261 33.333 1.68 0.00 38.53 4.61
139 140 2.439701 CCAGGTGGCTGCATCTGG 60.440 66.667 16.57 16.57 45.81 3.86
140 141 2.353958 CAGGTGGCTGCATCTGGT 59.646 61.111 0.50 0.00 30.00 4.00
141 142 1.303888 CAGGTGGCTGCATCTGGTT 60.304 57.895 0.50 0.00 30.00 3.67
142 143 1.303888 AGGTGGCTGCATCTGGTTG 60.304 57.895 0.50 0.00 0.00 3.77
143 144 2.345760 GGTGGCTGCATCTGGTTGG 61.346 63.158 0.50 0.00 0.00 3.77
144 145 2.677524 TGGCTGCATCTGGTTGGC 60.678 61.111 0.50 0.00 0.00 4.52
145 146 2.362120 GGCTGCATCTGGTTGGCT 60.362 61.111 0.50 0.00 0.00 4.75
146 147 2.707849 GGCTGCATCTGGTTGGCTG 61.708 63.158 0.50 0.00 0.00 4.85
147 148 1.975407 GCTGCATCTGGTTGGCTGT 60.975 57.895 0.00 0.00 0.00 4.40
148 149 1.880894 CTGCATCTGGTTGGCTGTG 59.119 57.895 0.00 0.00 0.00 3.66
149 150 1.592400 CTGCATCTGGTTGGCTGTGG 61.592 60.000 0.00 0.00 0.00 4.17
150 151 2.345760 GCATCTGGTTGGCTGTGGG 61.346 63.158 0.00 0.00 0.00 4.61
151 152 1.075482 CATCTGGTTGGCTGTGGGT 59.925 57.895 0.00 0.00 0.00 4.51
152 153 0.540365 CATCTGGTTGGCTGTGGGTT 60.540 55.000 0.00 0.00 0.00 4.11
153 154 0.188342 ATCTGGTTGGCTGTGGGTTT 59.812 50.000 0.00 0.00 0.00 3.27
154 155 0.032615 TCTGGTTGGCTGTGGGTTTT 60.033 50.000 0.00 0.00 0.00 2.43
155 156 0.829990 CTGGTTGGCTGTGGGTTTTT 59.170 50.000 0.00 0.00 0.00 1.94
171 172 2.893441 TTTTTGCACCCAGACTGCA 58.107 47.368 0.00 0.00 42.95 4.41
185 186 3.786809 CTGCAAGTTGCTGGATGTG 57.213 52.632 27.17 6.42 45.31 3.21
186 187 0.242825 CTGCAAGTTGCTGGATGTGG 59.757 55.000 27.17 5.17 45.31 4.17
187 188 1.180456 TGCAAGTTGCTGGATGTGGG 61.180 55.000 27.17 0.00 45.31 4.61
188 189 0.895100 GCAAGTTGCTGGATGTGGGA 60.895 55.000 20.71 0.00 40.96 4.37
189 190 1.619654 CAAGTTGCTGGATGTGGGAA 58.380 50.000 0.00 0.00 0.00 3.97
190 191 2.173519 CAAGTTGCTGGATGTGGGAAT 58.826 47.619 0.00 0.00 0.00 3.01
191 192 2.134789 AGTTGCTGGATGTGGGAATC 57.865 50.000 0.00 0.00 0.00 2.52
192 193 1.106285 GTTGCTGGATGTGGGAATCC 58.894 55.000 0.00 0.00 45.57 3.01
203 204 2.205022 TGGGAATCCACTTCTGCAAG 57.795 50.000 0.09 0.00 38.32 4.01
204 205 1.425066 TGGGAATCCACTTCTGCAAGT 59.575 47.619 0.09 0.00 44.26 3.16
205 206 2.158475 TGGGAATCCACTTCTGCAAGTT 60.158 45.455 0.09 0.00 41.24 2.66
206 207 2.893489 GGGAATCCACTTCTGCAAGTTT 59.107 45.455 0.09 0.00 41.24 2.66
207 208 3.321968 GGGAATCCACTTCTGCAAGTTTT 59.678 43.478 0.09 0.00 41.24 2.43
208 209 4.301628 GGAATCCACTTCTGCAAGTTTTG 58.698 43.478 0.00 0.00 41.24 2.44
209 210 4.301628 GAATCCACTTCTGCAAGTTTTGG 58.698 43.478 0.00 0.00 41.24 3.28
210 211 3.011566 TCCACTTCTGCAAGTTTTGGA 57.988 42.857 0.00 0.00 41.24 3.53
211 212 2.687935 TCCACTTCTGCAAGTTTTGGAC 59.312 45.455 0.00 0.00 41.24 4.02
212 213 2.223805 CCACTTCTGCAAGTTTTGGACC 60.224 50.000 0.00 0.00 41.24 4.46
213 214 2.426738 CACTTCTGCAAGTTTTGGACCA 59.573 45.455 0.00 0.00 41.24 4.02
214 215 3.096092 ACTTCTGCAAGTTTTGGACCAA 58.904 40.909 1.69 1.69 40.16 3.67
215 216 3.513515 ACTTCTGCAAGTTTTGGACCAAA 59.486 39.130 15.89 15.89 40.16 3.28
216 217 4.162131 ACTTCTGCAAGTTTTGGACCAAAT 59.838 37.500 20.22 3.80 40.16 2.32
217 218 4.320608 TCTGCAAGTTTTGGACCAAATC 57.679 40.909 20.22 18.45 33.19 2.17
218 219 3.703556 TCTGCAAGTTTTGGACCAAATCA 59.296 39.130 23.69 14.49 33.19 2.57
219 220 4.344679 TCTGCAAGTTTTGGACCAAATCAT 59.655 37.500 23.69 13.41 33.19 2.45
220 221 4.630111 TGCAAGTTTTGGACCAAATCATC 58.370 39.130 23.69 14.74 33.19 2.92
221 222 4.100653 TGCAAGTTTTGGACCAAATCATCA 59.899 37.500 23.69 16.48 33.19 3.07
222 223 4.448732 GCAAGTTTTGGACCAAATCATCAC 59.551 41.667 23.69 17.06 33.19 3.06
223 224 4.871933 AGTTTTGGACCAAATCATCACC 57.128 40.909 23.69 7.64 33.19 4.02
224 225 3.578282 AGTTTTGGACCAAATCATCACCC 59.422 43.478 23.69 6.56 33.19 4.61
225 226 2.988636 TTGGACCAAATCATCACCCA 57.011 45.000 3.84 0.00 0.00 4.51
226 227 2.214376 TGGACCAAATCATCACCCAC 57.786 50.000 0.00 0.00 0.00 4.61
227 228 1.272425 TGGACCAAATCATCACCCACC 60.272 52.381 0.00 0.00 0.00 4.61
228 229 1.272425 GGACCAAATCATCACCCACCA 60.272 52.381 0.00 0.00 0.00 4.17
229 230 2.624029 GGACCAAATCATCACCCACCAT 60.624 50.000 0.00 0.00 0.00 3.55
230 231 2.428171 GACCAAATCATCACCCACCATG 59.572 50.000 0.00 0.00 0.00 3.66
231 232 1.137479 CCAAATCATCACCCACCATGC 59.863 52.381 0.00 0.00 0.00 4.06
232 233 1.826096 CAAATCATCACCCACCATGCA 59.174 47.619 0.00 0.00 0.00 3.96
233 234 2.234168 CAAATCATCACCCACCATGCAA 59.766 45.455 0.00 0.00 0.00 4.08
234 235 1.771565 ATCATCACCCACCATGCAAG 58.228 50.000 0.00 0.00 0.00 4.01
235 236 0.405198 TCATCACCCACCATGCAAGT 59.595 50.000 0.00 0.00 0.00 3.16
236 237 1.203038 TCATCACCCACCATGCAAGTT 60.203 47.619 0.00 0.00 0.00 2.66
237 238 1.619827 CATCACCCACCATGCAAGTTT 59.380 47.619 0.00 0.00 0.00 2.66
238 239 1.327303 TCACCCACCATGCAAGTTTC 58.673 50.000 0.00 0.00 0.00 2.78
239 240 1.133513 TCACCCACCATGCAAGTTTCT 60.134 47.619 0.00 0.00 0.00 2.52
240 241 1.000060 CACCCACCATGCAAGTTTCTG 60.000 52.381 0.00 0.00 0.00 3.02
241 242 0.604578 CCCACCATGCAAGTTTCTGG 59.395 55.000 0.11 0.11 34.84 3.86
242 243 1.619654 CCACCATGCAAGTTTCTGGA 58.380 50.000 8.74 0.00 32.92 3.86
243 244 1.270550 CCACCATGCAAGTTTCTGGAC 59.729 52.381 8.74 0.00 32.92 4.02
244 245 1.069022 CACCATGCAAGTTTCTGGACG 60.069 52.381 8.74 0.00 32.92 4.79
245 246 1.238439 CCATGCAAGTTTCTGGACGT 58.762 50.000 0.00 0.00 0.00 4.34
246 247 1.069022 CCATGCAAGTTTCTGGACGTG 60.069 52.381 0.00 0.00 33.07 4.49
247 248 1.603802 CATGCAAGTTTCTGGACGTGT 59.396 47.619 0.00 0.00 32.61 4.49
248 249 1.013596 TGCAAGTTTCTGGACGTGTG 58.986 50.000 0.00 0.00 32.61 3.82
249 250 0.307760 GCAAGTTTCTGGACGTGTGG 59.692 55.000 0.00 0.00 32.61 4.17
250 251 1.663695 CAAGTTTCTGGACGTGTGGT 58.336 50.000 0.00 0.00 0.00 4.16
251 252 1.330521 CAAGTTTCTGGACGTGTGGTG 59.669 52.381 0.00 0.00 0.00 4.17
252 253 0.814010 AGTTTCTGGACGTGTGGTGC 60.814 55.000 0.00 0.00 37.52 5.01
253 254 1.092921 GTTTCTGGACGTGTGGTGCA 61.093 55.000 0.00 0.00 45.48 4.57
254 255 0.179032 TTTCTGGACGTGTGGTGCAT 60.179 50.000 0.00 0.00 46.50 3.96
255 256 0.179032 TTCTGGACGTGTGGTGCATT 60.179 50.000 0.00 0.00 46.50 3.56
256 257 0.179032 TCTGGACGTGTGGTGCATTT 60.179 50.000 0.00 0.00 46.50 2.32
257 258 1.070914 TCTGGACGTGTGGTGCATTTA 59.929 47.619 0.00 0.00 46.50 1.40
258 259 1.196808 CTGGACGTGTGGTGCATTTAC 59.803 52.381 0.00 0.00 46.50 2.01
259 260 0.519961 GGACGTGTGGTGCATTTACC 59.480 55.000 0.00 0.00 41.24 2.85
260 261 1.519408 GACGTGTGGTGCATTTACCT 58.481 50.000 0.00 0.00 41.43 3.08
402 403 2.040544 CAGCACCCACGTCCAATCC 61.041 63.158 0.00 0.00 0.00 3.01
403 404 2.033448 GCACCCACGTCCAATCCA 59.967 61.111 0.00 0.00 0.00 3.41
404 405 1.602323 GCACCCACGTCCAATCCAA 60.602 57.895 0.00 0.00 0.00 3.53
405 406 0.965363 GCACCCACGTCCAATCCAAT 60.965 55.000 0.00 0.00 0.00 3.16
406 407 1.094785 CACCCACGTCCAATCCAATC 58.905 55.000 0.00 0.00 0.00 2.67
490 491 1.386772 TTTCTCCCCACCACCACCT 60.387 57.895 0.00 0.00 0.00 4.00
493 494 4.995058 TCCCCACCACCACCTCCC 62.995 72.222 0.00 0.00 0.00 4.30
790 791 4.500396 GCAGCAGCAGAGAGAGAC 57.500 61.111 0.00 0.00 41.58 3.36
791 792 1.590665 GCAGCAGCAGAGAGAGACA 59.409 57.895 0.00 0.00 41.58 3.41
792 793 0.458889 GCAGCAGCAGAGAGAGACAG 60.459 60.000 0.00 0.00 41.58 3.51
793 794 0.458889 CAGCAGCAGAGAGAGACAGC 60.459 60.000 0.00 0.00 0.00 4.40
824 827 2.223735 TGTAGATCGTCCAATCCGAAGC 60.224 50.000 0.00 0.00 37.93 3.86
836 839 0.617535 TCCGAAGCCATTCCTCTCCA 60.618 55.000 0.00 0.00 31.21 3.86
1221 1254 2.893398 GTGCGGAGGAAGATCGGT 59.107 61.111 0.00 0.00 0.00 4.69
1228 1261 1.413077 GGAGGAAGATCGGTCCGAAAT 59.587 52.381 19.76 6.94 39.99 2.17
1256 1289 2.441410 TCTCGTGTCTCTGCATTCTCT 58.559 47.619 0.00 0.00 0.00 3.10
1257 1290 2.163211 TCTCGTGTCTCTGCATTCTCTG 59.837 50.000 0.00 0.00 0.00 3.35
1258 1291 1.889170 TCGTGTCTCTGCATTCTCTGT 59.111 47.619 0.00 0.00 0.00 3.41
1451 1521 1.741770 CTCCGCCGGTGAGGAAAAG 60.742 63.158 18.79 0.00 45.00 2.27
1470 1540 6.659242 GGAAAAGATGAAGGTGAGATGGTAAA 59.341 38.462 0.00 0.00 0.00 2.01
1655 1726 2.142356 TTCCCCATCACGCATGAAAT 57.858 45.000 0.00 0.00 38.69 2.17
1683 1795 2.546368 TGGACGTTGTTTTCATCCTTCG 59.454 45.455 0.00 0.00 30.30 3.79
1770 1889 7.148689 CCTGTTATTCTGCAAAGCTCAAAATTC 60.149 37.037 0.00 0.00 0.00 2.17
1775 1894 5.663456 TCTGCAAAGCTCAAAATTCAAAGT 58.337 33.333 0.00 0.00 0.00 2.66
1779 1898 6.255453 TGCAAAGCTCAAAATTCAAAGTGTAC 59.745 34.615 0.00 0.00 0.00 2.90
1838 1957 6.784176 GTGAAGCAATGTTTTCACCAAATTT 58.216 32.000 16.41 0.00 44.56 1.82
1954 3345 8.531146 CAAACTATCACCTACCATTCCATTTTT 58.469 33.333 0.00 0.00 0.00 1.94
1970 3361 8.537049 TTCCATTTTTGAAACATGACATCATC 57.463 30.769 5.67 0.00 33.61 2.92
1980 3371 8.229811 TGAAACATGACATCATCTTTTAGAACG 58.770 33.333 0.00 0.00 33.61 3.95
1988 3379 8.955061 ACATCATCTTTTAGAACGAAAACATG 57.045 30.769 0.00 0.00 30.36 3.21
1989 3380 8.023128 ACATCATCTTTTAGAACGAAAACATGG 58.977 33.333 0.00 0.00 30.21 3.66
1990 3381 6.378582 TCATCTTTTAGAACGAAAACATGGC 58.621 36.000 0.00 0.00 30.21 4.40
1991 3382 5.759506 TCTTTTAGAACGAAAACATGGCA 57.240 34.783 0.00 0.00 0.00 4.92
1992 3383 6.325919 TCTTTTAGAACGAAAACATGGCAT 57.674 33.333 0.00 0.00 0.00 4.40
1993 3384 6.378582 TCTTTTAGAACGAAAACATGGCATC 58.621 36.000 0.00 0.00 0.00 3.91
1994 3385 2.900122 AGAACGAAAACATGGCATCG 57.100 45.000 12.73 12.73 40.90 3.84
1998 3389 3.363341 ACGAAAACATGGCATCGTTTT 57.637 38.095 26.19 26.19 45.33 2.43
1999 3390 3.712187 ACGAAAACATGGCATCGTTTTT 58.288 36.364 26.41 19.12 45.33 1.94
2064 3455 7.714377 AGATTAAGATGAAGCTCCACAATAGTG 59.286 37.037 0.00 0.00 45.47 2.74
2082 3473 7.776969 ACAATAGTGATTAAATGAGCCTCACAT 59.223 33.333 0.00 0.00 38.90 3.21
2098 3491 5.524281 GCCTCACATTTCTTAAGGTAGCTAC 59.476 44.000 15.88 15.88 0.00 3.58
2124 3517 8.696043 TCCCATTAATCAGTTATCCAGAAATG 57.304 34.615 0.00 0.00 0.00 2.32
2327 3720 8.915036 TGTTAGTTTTAATTGGTTTCTTGGCTA 58.085 29.630 0.00 0.00 0.00 3.93
2496 3889 6.540914 AGACTAGATTCTCCACTCTACTTTCG 59.459 42.308 0.00 0.00 0.00 3.46
3017 4410 8.019769 ACTTTCGAGTTTCAAGAGTATTTAGC 57.980 34.615 0.93 0.00 0.00 3.09
3018 4411 7.656137 ACTTTCGAGTTTCAAGAGTATTTAGCA 59.344 33.333 0.93 0.00 0.00 3.49
3064 4458 7.370905 TCTCCATGACATCAATTCTGTCTAT 57.629 36.000 15.27 7.52 42.78 1.98
3890 5695 8.815565 AGAAACTCTGATGTTCTAGAGATACA 57.184 34.615 8.13 0.00 42.34 2.29
3927 5732 1.301677 CGAGGCTTTGCAGGAGAACC 61.302 60.000 3.58 0.00 0.00 3.62
4224 6194 2.563179 ACTACTCACTGAAAGACGGCAT 59.437 45.455 0.00 0.00 37.43 4.40
4231 6201 6.016276 ACTCACTGAAAGACGGCATAAAAATT 60.016 34.615 0.00 0.00 37.43 1.82
4321 6416 3.953612 TCAAATGATTCCCTTATTGCGCT 59.046 39.130 9.73 0.00 0.00 5.92
4336 6431 2.226330 TGCGCTCAAACCATAGTTGTT 58.774 42.857 9.73 0.00 35.97 2.83
4339 6434 3.119849 GCGCTCAAACCATAGTTGTTCAT 60.120 43.478 0.00 0.00 35.97 2.57
4349 6444 6.815089 ACCATAGTTGTTCATTTCTGCAAAA 58.185 32.000 0.00 0.00 0.00 2.44
4421 6516 1.344438 AGATGCTGGACGAGTGTTCAA 59.656 47.619 0.00 0.00 31.68 2.69
4527 6622 6.773976 ACATCAAACAAAAAGAGGAGAACA 57.226 33.333 0.00 0.00 0.00 3.18
4554 6649 7.851508 CAGCATGGTATGTAACTATGTACAAC 58.148 38.462 0.00 0.00 46.05 3.32
4584 6679 1.965414 TCCATGACAAGGAAGCCCTA 58.035 50.000 0.00 0.00 43.48 3.53
4747 6844 7.241628 ACATAGAAATCTTCCCAAGAGGTTTT 58.758 34.615 0.00 0.00 41.61 2.43
4868 6965 4.870991 GGCTATTGTTCCACACTTCTACTC 59.129 45.833 0.00 0.00 0.00 2.59
4888 6985 0.673985 GGAAGCCACAAAGAACCCAC 59.326 55.000 0.00 0.00 0.00 4.61
4941 7042 3.347216 CAATCCCACGAATCAAAGACCT 58.653 45.455 0.00 0.00 0.00 3.85
4958 7059 9.408648 TCAAAGACCTCACTTAAGAAAAATTCT 57.591 29.630 10.09 0.89 43.15 2.40
4981 7089 9.495572 TTCTGAGAATCCTAGAAAAACTCTTTC 57.504 33.333 0.00 0.00 35.41 2.62
4991 7099 8.342634 CCTAGAAAAACTCTTTCAAATCGAACA 58.657 33.333 0.00 0.00 35.41 3.18
5018 7126 1.858091 CCCTAGCATGCAGTCTAACG 58.142 55.000 21.98 1.82 0.00 3.18
5070 7178 8.307483 GCAATAGCTCTATAAGTACTTCCATGA 58.693 37.037 12.39 5.95 37.91 3.07
5116 7224 3.179830 CCGCACACAGTAGTTCTGATAC 58.820 50.000 3.49 0.00 46.27 2.24
5127 7259 8.967918 ACAGTAGTTCTGATACACAATAAGCTA 58.032 33.333 3.49 0.00 46.27 3.32
5128 7260 9.803315 CAGTAGTTCTGATACACAATAAGCTAA 57.197 33.333 0.00 0.00 46.27 3.09
5129 7261 9.804758 AGTAGTTCTGATACACAATAAGCTAAC 57.195 33.333 0.00 0.00 0.00 2.34
5131 7263 7.321153 AGTTCTGATACACAATAAGCTAACGT 58.679 34.615 0.00 0.00 0.00 3.99
5132 7264 8.464404 AGTTCTGATACACAATAAGCTAACGTA 58.536 33.333 0.00 0.00 0.00 3.57
5133 7265 9.245962 GTTCTGATACACAATAAGCTAACGTAT 57.754 33.333 0.00 0.00 0.00 3.06
5142 7274 9.698617 CACAATAAGCTAACGTATTAAAGTTCC 57.301 33.333 0.00 0.00 30.54 3.62
5143 7275 9.439500 ACAATAAGCTAACGTATTAAAGTTCCA 57.561 29.630 0.00 0.00 30.54 3.53
5145 7277 9.662947 AATAAGCTAACGTATTAAAGTTCCAGT 57.337 29.630 0.00 0.00 30.00 4.00
5146 7278 7.974482 AAGCTAACGTATTAAAGTTCCAGTT 57.026 32.000 0.00 0.00 0.00 3.16
5147 7279 7.974482 AGCTAACGTATTAAAGTTCCAGTTT 57.026 32.000 0.00 0.00 0.00 2.66
5148 7280 7.803724 AGCTAACGTATTAAAGTTCCAGTTTG 58.196 34.615 0.00 0.00 0.00 2.93
5149 7281 7.443272 AGCTAACGTATTAAAGTTCCAGTTTGT 59.557 33.333 0.00 0.00 0.00 2.83
5214 7356 4.212004 CAGGTGTGATAGAATATTGTGGCG 59.788 45.833 0.00 0.00 0.00 5.69
5233 7375 0.033504 GAGGAGACGGCACTTCACAA 59.966 55.000 0.00 0.00 0.00 3.33
5328 7470 4.816385 TGAGGCACTAAACAGAAAGACAAG 59.184 41.667 0.00 0.00 41.55 3.16
5375 7517 1.731720 AATCGGTGCTGAAGAGCTTC 58.268 50.000 3.32 3.32 46.39 3.86
5491 7639 1.003580 AGGTGTGTATGTCAAGGCCAG 59.996 52.381 5.01 0.00 0.00 4.85
6204 8370 2.033801 AGCATTGTGTGTCTTGCAACTC 59.966 45.455 0.00 0.00 37.56 3.01
6255 8421 6.319658 AGAGTTGGGTAATAGAAATGCACATG 59.680 38.462 0.00 0.00 0.00 3.21
6327 8493 2.557869 TGCTACACCATTACTTCCCCT 58.442 47.619 0.00 0.00 0.00 4.79
6529 8695 7.886629 AACATAACTTGTAAGATGGATGCAT 57.113 32.000 0.00 0.00 37.68 3.96
6540 8706 2.229675 TGGATGCATGATGACTCGAC 57.770 50.000 2.46 0.00 0.00 4.20
6642 8808 0.098200 TATGTGTCCTTCGTCGCTCG 59.902 55.000 0.00 0.00 41.41 5.03
6760 8926 4.568760 GGTAGAGCTACAGATTCTTTGCAC 59.431 45.833 9.62 0.52 37.78 4.57
6908 9074 7.775561 AGGGAATAAGAGACAACCAATGTATTC 59.224 37.037 0.00 0.00 44.12 1.75
6912 9078 5.520748 AGAGACAACCAATGTATTCCCTT 57.479 39.130 0.00 0.00 44.12 3.95
7220 9386 1.806542 CCACTCCGGAGACAACAAATG 59.193 52.381 37.69 21.28 36.56 2.32
7273 9439 2.154854 TCACAAGCTTCGTGAAGAGG 57.845 50.000 21.65 4.32 40.34 3.69
7347 9514 1.734465 CAAGCTTTAAGGCTCTCACCG 59.266 52.381 13.02 0.00 42.24 4.94
7351 9518 2.613223 GCTTTAAGGCTCTCACCGAACT 60.613 50.000 1.67 0.00 33.69 3.01
7564 9731 2.025981 TGGGGATGAACTTGGATGTCAG 60.026 50.000 0.00 0.00 0.00 3.51
7590 9759 7.441017 ACAATGCAACAAAAACCTACATACAT 58.559 30.769 0.00 0.00 0.00 2.29
7658 9828 5.126869 TCCCACTTATTTATGCATGTTGGTG 59.873 40.000 10.16 10.25 0.00 4.17
7667 9845 0.961019 GCATGTTGGTGGCTTCTTCA 59.039 50.000 0.00 0.00 0.00 3.02
7675 9853 2.861147 GTGGCTTCTTCACCTTACCT 57.139 50.000 0.00 0.00 0.00 3.08
7689 9867 2.094130 CCTTACCTGGAGTCTTCGAACC 60.094 54.545 0.00 0.00 0.00 3.62
7699 9877 2.166664 AGTCTTCGAACCATACAGAGGC 59.833 50.000 0.00 0.00 0.00 4.70
7701 9879 2.832129 TCTTCGAACCATACAGAGGCTT 59.168 45.455 0.00 0.00 0.00 4.35
7717 9895 1.135286 GGCTTTGGAGGCTGAAAATCG 60.135 52.381 0.00 0.00 44.59 3.34
7723 9901 1.804748 GGAGGCTGAAAATCGAAACGT 59.195 47.619 0.00 0.00 0.00 3.99
7740 9918 8.442605 TCGAAACGTTTTCCATGATAATTTTC 57.557 30.769 15.89 0.00 0.00 2.29
7745 9923 6.094325 ACGTTTTCCATGATAATTTTCGGCTA 59.906 34.615 0.00 0.00 0.00 3.93
7756 9934 2.139323 TTTCGGCTACTCTAGAGGCA 57.861 50.000 23.50 10.07 39.38 4.75
7807 9985 1.841103 GCCCAAAGAAGCCCCCAAA 60.841 57.895 0.00 0.00 0.00 3.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.179121 ATGTGCCGACGCTATTCGAA 60.179 50.000 0.00 0.00 41.78 3.71
1 2 0.869880 CATGTGCCGACGCTATTCGA 60.870 55.000 1.23 0.00 41.78 3.71
2 3 1.145759 ACATGTGCCGACGCTATTCG 61.146 55.000 0.00 0.00 45.38 3.34
3 4 1.006832 AACATGTGCCGACGCTATTC 58.993 50.000 0.00 0.00 35.36 1.75
4 5 1.448985 AAACATGTGCCGACGCTATT 58.551 45.000 0.00 0.00 35.36 1.73
5 6 1.448985 AAAACATGTGCCGACGCTAT 58.551 45.000 0.00 0.00 35.36 2.97
6 7 1.231221 AAAAACATGTGCCGACGCTA 58.769 45.000 0.00 0.00 35.36 4.26
7 8 1.231221 TAAAAACATGTGCCGACGCT 58.769 45.000 0.00 0.00 35.36 5.07
8 9 2.256445 ATAAAAACATGTGCCGACGC 57.744 45.000 0.00 0.00 0.00 5.19
9 10 6.020995 GGAATAAATAAAAACATGTGCCGACG 60.021 38.462 0.00 0.00 0.00 5.12
10 11 7.033185 AGGAATAAATAAAAACATGTGCCGAC 58.967 34.615 0.00 0.00 0.00 4.79
11 12 7.122055 AGAGGAATAAATAAAAACATGTGCCGA 59.878 33.333 0.00 0.00 0.00 5.54
12 13 7.257722 AGAGGAATAAATAAAAACATGTGCCG 58.742 34.615 0.00 0.00 0.00 5.69
13 14 8.872845 CAAGAGGAATAAATAAAAACATGTGCC 58.127 33.333 0.00 0.00 0.00 5.01
14 15 8.382875 GCAAGAGGAATAAATAAAAACATGTGC 58.617 33.333 0.00 0.00 0.00 4.57
15 16 9.643693 AGCAAGAGGAATAAATAAAAACATGTG 57.356 29.630 0.00 0.00 0.00 3.21
16 17 9.860898 GAGCAAGAGGAATAAATAAAAACATGT 57.139 29.630 0.00 0.00 0.00 3.21
22 23 9.444600 ACGTTAGAGCAAGAGGAATAAATAAAA 57.555 29.630 0.00 0.00 0.00 1.52
24 25 9.525409 GTACGTTAGAGCAAGAGGAATAAATAA 57.475 33.333 0.00 0.00 0.00 1.40
25 26 8.910944 AGTACGTTAGAGCAAGAGGAATAAATA 58.089 33.333 0.00 0.00 0.00 1.40
26 27 7.707035 CAGTACGTTAGAGCAAGAGGAATAAAT 59.293 37.037 0.00 0.00 0.00 1.40
27 28 7.033791 CAGTACGTTAGAGCAAGAGGAATAAA 58.966 38.462 0.00 0.00 0.00 1.40
28 29 6.376299 TCAGTACGTTAGAGCAAGAGGAATAA 59.624 38.462 0.00 0.00 0.00 1.40
29 30 5.884232 TCAGTACGTTAGAGCAAGAGGAATA 59.116 40.000 0.00 0.00 0.00 1.75
30 31 4.705507 TCAGTACGTTAGAGCAAGAGGAAT 59.294 41.667 0.00 0.00 0.00 3.01
31 32 4.077108 TCAGTACGTTAGAGCAAGAGGAA 58.923 43.478 0.00 0.00 0.00 3.36
32 33 3.439476 GTCAGTACGTTAGAGCAAGAGGA 59.561 47.826 0.00 0.00 0.00 3.71
33 34 3.190744 TGTCAGTACGTTAGAGCAAGAGG 59.809 47.826 0.00 0.00 0.00 3.69
34 35 4.083217 ACTGTCAGTACGTTAGAGCAAGAG 60.083 45.833 2.87 0.00 0.00 2.85
35 36 3.819337 ACTGTCAGTACGTTAGAGCAAGA 59.181 43.478 2.87 0.00 0.00 3.02
36 37 4.162096 ACTGTCAGTACGTTAGAGCAAG 57.838 45.455 2.87 0.00 0.00 4.01
37 38 4.295870 CAACTGTCAGTACGTTAGAGCAA 58.704 43.478 5.77 0.00 0.00 3.91
38 39 3.305131 CCAACTGTCAGTACGTTAGAGCA 60.305 47.826 5.77 0.00 0.00 4.26
39 40 3.243336 CCAACTGTCAGTACGTTAGAGC 58.757 50.000 5.77 0.00 0.00 4.09
40 41 3.834610 CCCAACTGTCAGTACGTTAGAG 58.165 50.000 5.77 0.00 0.00 2.43
41 42 2.029649 GCCCAACTGTCAGTACGTTAGA 60.030 50.000 5.77 0.00 0.00 2.10
42 43 2.334838 GCCCAACTGTCAGTACGTTAG 58.665 52.381 5.77 0.00 0.00 2.34
43 44 1.001181 GGCCCAACTGTCAGTACGTTA 59.999 52.381 5.77 0.00 0.00 3.18
44 45 0.250166 GGCCCAACTGTCAGTACGTT 60.250 55.000 5.77 0.00 0.00 3.99
45 46 1.370064 GGCCCAACTGTCAGTACGT 59.630 57.895 5.77 0.00 0.00 3.57
46 47 1.375523 GGGCCCAACTGTCAGTACG 60.376 63.158 19.95 0.52 0.00 3.67
47 48 0.400594 AAGGGCCCAACTGTCAGTAC 59.599 55.000 27.56 0.00 0.00 2.73
48 49 0.400213 CAAGGGCCCAACTGTCAGTA 59.600 55.000 27.56 0.00 0.00 2.74
49 50 1.151450 CAAGGGCCCAACTGTCAGT 59.849 57.895 27.56 0.00 0.00 3.41
50 51 0.400213 TACAAGGGCCCAACTGTCAG 59.600 55.000 27.56 6.40 0.00 3.51
51 52 0.400213 CTACAAGGGCCCAACTGTCA 59.600 55.000 27.56 11.46 0.00 3.58
52 53 0.960861 GCTACAAGGGCCCAACTGTC 60.961 60.000 27.56 9.37 0.00 3.51
53 54 1.074951 GCTACAAGGGCCCAACTGT 59.925 57.895 27.56 24.82 0.00 3.55
54 55 0.962356 CAGCTACAAGGGCCCAACTG 60.962 60.000 27.56 20.25 0.00 3.16
55 56 1.380302 CAGCTACAAGGGCCCAACT 59.620 57.895 27.56 8.55 0.00 3.16
56 57 2.343426 GCAGCTACAAGGGCCCAAC 61.343 63.158 27.56 6.05 0.00 3.77
57 58 2.035626 GCAGCTACAAGGGCCCAA 59.964 61.111 27.56 5.13 0.00 4.12
58 59 4.408821 CGCAGCTACAAGGGCCCA 62.409 66.667 27.56 0.70 0.00 5.36
71 72 1.647346 TATCCAGGTTTAACGCGCAG 58.353 50.000 5.73 2.42 0.00 5.18
72 73 2.319136 ATATCCAGGTTTAACGCGCA 57.681 45.000 5.73 0.00 0.00 6.09
73 74 2.477754 GGTATATCCAGGTTTAACGCGC 59.522 50.000 5.73 0.00 35.97 6.86
74 75 3.719924 TGGTATATCCAGGTTTAACGCG 58.280 45.455 3.53 3.53 41.93 6.01
103 104 9.739276 CCACCTGGCATAATATATTTTCTAGAA 57.261 33.333 2.68 0.00 0.00 2.10
122 123 2.439701 CCAGATGCAGCCACCTGG 60.440 66.667 0.00 9.57 39.54 4.45
123 124 1.303888 AACCAGATGCAGCCACCTG 60.304 57.895 0.00 0.00 42.13 4.00
124 125 1.303888 CAACCAGATGCAGCCACCT 60.304 57.895 0.00 0.00 0.00 4.00
125 126 2.345760 CCAACCAGATGCAGCCACC 61.346 63.158 0.00 0.00 0.00 4.61
126 127 2.998279 GCCAACCAGATGCAGCCAC 61.998 63.158 0.00 0.00 0.00 5.01
127 128 2.677524 GCCAACCAGATGCAGCCA 60.678 61.111 0.00 0.00 0.00 4.75
128 129 2.362120 AGCCAACCAGATGCAGCC 60.362 61.111 0.00 0.00 0.00 4.85
129 130 1.975407 ACAGCCAACCAGATGCAGC 60.975 57.895 0.00 0.00 0.00 5.25
130 131 1.592400 CCACAGCCAACCAGATGCAG 61.592 60.000 0.00 0.00 0.00 4.41
131 132 1.604308 CCACAGCCAACCAGATGCA 60.604 57.895 0.00 0.00 0.00 3.96
132 133 2.345760 CCCACAGCCAACCAGATGC 61.346 63.158 0.00 0.00 0.00 3.91
133 134 0.540365 AACCCACAGCCAACCAGATG 60.540 55.000 0.00 0.00 0.00 2.90
134 135 0.188342 AAACCCACAGCCAACCAGAT 59.812 50.000 0.00 0.00 0.00 2.90
135 136 0.032615 AAAACCCACAGCCAACCAGA 60.033 50.000 0.00 0.00 0.00 3.86
136 137 0.829990 AAAAACCCACAGCCAACCAG 59.170 50.000 0.00 0.00 0.00 4.00
137 138 2.998493 AAAAACCCACAGCCAACCA 58.002 47.368 0.00 0.00 0.00 3.67
158 159 1.656441 CAACTTGCAGTCTGGGTGC 59.344 57.895 1.14 0.00 41.59 5.01
159 160 1.656441 GCAACTTGCAGTCTGGGTG 59.344 57.895 8.97 0.00 44.26 4.61
160 161 4.164258 GCAACTTGCAGTCTGGGT 57.836 55.556 8.97 0.00 44.26 4.51
169 170 0.895100 TCCCACATCCAGCAACTTGC 60.895 55.000 5.55 5.55 45.46 4.01
170 171 1.619654 TTCCCACATCCAGCAACTTG 58.380 50.000 0.00 0.00 0.00 3.16
171 172 2.450476 GATTCCCACATCCAGCAACTT 58.550 47.619 0.00 0.00 0.00 2.66
172 173 1.341383 GGATTCCCACATCCAGCAACT 60.341 52.381 0.00 0.00 42.35 3.16
173 174 1.106285 GGATTCCCACATCCAGCAAC 58.894 55.000 0.00 0.00 42.35 4.17
174 175 0.703488 TGGATTCCCACATCCAGCAA 59.297 50.000 0.00 0.00 46.67 3.91
175 176 2.396713 TGGATTCCCACATCCAGCA 58.603 52.632 0.00 0.00 46.67 4.41
184 185 1.425066 ACTTGCAGAAGTGGATTCCCA 59.575 47.619 0.00 0.00 41.12 4.37
185 186 2.206576 ACTTGCAGAAGTGGATTCCC 57.793 50.000 0.00 0.00 41.12 3.97
186 187 4.301628 CAAAACTTGCAGAAGTGGATTCC 58.698 43.478 0.00 0.00 41.87 3.01
187 188 4.037923 TCCAAAACTTGCAGAAGTGGATTC 59.962 41.667 4.61 0.00 41.87 2.52
188 189 3.960102 TCCAAAACTTGCAGAAGTGGATT 59.040 39.130 4.61 0.00 41.87 3.01
189 190 3.319122 GTCCAAAACTTGCAGAAGTGGAT 59.681 43.478 10.29 0.00 41.87 3.41
190 191 2.687935 GTCCAAAACTTGCAGAAGTGGA 59.312 45.455 4.61 4.61 41.87 4.02
191 192 2.223805 GGTCCAAAACTTGCAGAAGTGG 60.224 50.000 0.00 0.00 41.87 4.00
192 193 2.426738 TGGTCCAAAACTTGCAGAAGTG 59.573 45.455 0.00 0.00 41.87 3.16
193 194 2.733956 TGGTCCAAAACTTGCAGAAGT 58.266 42.857 0.00 0.00 44.79 3.01
194 195 3.799281 TTGGTCCAAAACTTGCAGAAG 57.201 42.857 0.40 0.00 35.07 2.85
195 196 4.161189 TGATTTGGTCCAAAACTTGCAGAA 59.839 37.500 20.76 0.00 36.90 3.02
196 197 3.703556 TGATTTGGTCCAAAACTTGCAGA 59.296 39.130 20.76 0.00 36.90 4.26
197 198 4.057406 TGATTTGGTCCAAAACTTGCAG 57.943 40.909 20.76 0.00 36.90 4.41
198 199 4.100653 TGATGATTTGGTCCAAAACTTGCA 59.899 37.500 20.76 13.67 36.90 4.08
199 200 4.448732 GTGATGATTTGGTCCAAAACTTGC 59.551 41.667 20.76 11.59 36.90 4.01
200 201 4.990426 GGTGATGATTTGGTCCAAAACTTG 59.010 41.667 20.76 0.00 36.90 3.16
201 202 4.040339 GGGTGATGATTTGGTCCAAAACTT 59.960 41.667 20.76 15.58 36.90 2.66
202 203 3.578282 GGGTGATGATTTGGTCCAAAACT 59.422 43.478 20.76 5.63 36.90 2.66
203 204 3.323403 TGGGTGATGATTTGGTCCAAAAC 59.677 43.478 20.76 18.08 36.90 2.43
204 205 3.323403 GTGGGTGATGATTTGGTCCAAAA 59.677 43.478 20.76 6.16 36.90 2.44
205 206 2.896685 GTGGGTGATGATTTGGTCCAAA 59.103 45.455 19.29 19.29 37.75 3.28
206 207 2.524306 GTGGGTGATGATTTGGTCCAA 58.476 47.619 0.00 0.00 0.00 3.53
207 208 1.272425 GGTGGGTGATGATTTGGTCCA 60.272 52.381 0.00 0.00 0.00 4.02
208 209 1.272425 TGGTGGGTGATGATTTGGTCC 60.272 52.381 0.00 0.00 0.00 4.46
209 210 2.214376 TGGTGGGTGATGATTTGGTC 57.786 50.000 0.00 0.00 0.00 4.02
210 211 2.459644 CATGGTGGGTGATGATTTGGT 58.540 47.619 0.00 0.00 0.00 3.67
211 212 1.137479 GCATGGTGGGTGATGATTTGG 59.863 52.381 0.00 0.00 0.00 3.28
212 213 1.826096 TGCATGGTGGGTGATGATTTG 59.174 47.619 0.00 0.00 0.00 2.32
213 214 2.234896 TGCATGGTGGGTGATGATTT 57.765 45.000 0.00 0.00 0.00 2.17
214 215 2.104967 CTTGCATGGTGGGTGATGATT 58.895 47.619 0.00 0.00 0.00 2.57
215 216 1.006281 ACTTGCATGGTGGGTGATGAT 59.994 47.619 4.44 0.00 0.00 2.45
216 217 0.405198 ACTTGCATGGTGGGTGATGA 59.595 50.000 4.44 0.00 0.00 2.92
217 218 1.259609 AACTTGCATGGTGGGTGATG 58.740 50.000 4.44 0.00 0.00 3.07
218 219 1.895131 GAAACTTGCATGGTGGGTGAT 59.105 47.619 4.44 0.00 0.00 3.06
219 220 1.133513 AGAAACTTGCATGGTGGGTGA 60.134 47.619 4.44 0.00 0.00 4.02
220 221 1.000060 CAGAAACTTGCATGGTGGGTG 60.000 52.381 4.44 0.00 0.00 4.61
221 222 1.331214 CAGAAACTTGCATGGTGGGT 58.669 50.000 4.44 0.00 0.00 4.51
222 223 0.604578 CCAGAAACTTGCATGGTGGG 59.395 55.000 4.44 0.00 0.00 4.61
223 224 1.270550 GTCCAGAAACTTGCATGGTGG 59.729 52.381 4.44 5.58 34.32 4.61
224 225 1.069022 CGTCCAGAAACTTGCATGGTG 60.069 52.381 4.44 0.00 34.32 4.17
225 226 1.238439 CGTCCAGAAACTTGCATGGT 58.762 50.000 4.44 0.00 34.32 3.55
226 227 1.069022 CACGTCCAGAAACTTGCATGG 60.069 52.381 4.44 0.00 0.00 3.66
227 228 1.603802 ACACGTCCAGAAACTTGCATG 59.396 47.619 0.00 0.00 0.00 4.06
228 229 1.603802 CACACGTCCAGAAACTTGCAT 59.396 47.619 0.00 0.00 0.00 3.96
229 230 1.013596 CACACGTCCAGAAACTTGCA 58.986 50.000 0.00 0.00 0.00 4.08
230 231 0.307760 CCACACGTCCAGAAACTTGC 59.692 55.000 0.00 0.00 0.00 4.01
231 232 1.330521 CACCACACGTCCAGAAACTTG 59.669 52.381 0.00 0.00 0.00 3.16
232 233 1.663695 CACCACACGTCCAGAAACTT 58.336 50.000 0.00 0.00 0.00 2.66
233 234 0.814010 GCACCACACGTCCAGAAACT 60.814 55.000 0.00 0.00 0.00 2.66
234 235 1.092921 TGCACCACACGTCCAGAAAC 61.093 55.000 0.00 0.00 0.00 2.78
235 236 0.179032 ATGCACCACACGTCCAGAAA 60.179 50.000 0.00 0.00 0.00 2.52
236 237 0.179032 AATGCACCACACGTCCAGAA 60.179 50.000 0.00 0.00 0.00 3.02
237 238 0.179032 AAATGCACCACACGTCCAGA 60.179 50.000 0.00 0.00 0.00 3.86
238 239 1.196808 GTAAATGCACCACACGTCCAG 59.803 52.381 0.00 0.00 0.00 3.86
239 240 1.231221 GTAAATGCACCACACGTCCA 58.769 50.000 0.00 0.00 0.00 4.02
240 241 0.519961 GGTAAATGCACCACACGTCC 59.480 55.000 0.00 0.00 38.55 4.79
241 242 1.463444 GAGGTAAATGCACCACACGTC 59.537 52.381 0.00 0.00 41.40 4.34
242 243 1.202710 TGAGGTAAATGCACCACACGT 60.203 47.619 0.00 0.00 41.40 4.49
243 244 1.518325 TGAGGTAAATGCACCACACG 58.482 50.000 0.00 0.00 41.40 4.49
244 245 4.519540 AAATGAGGTAAATGCACCACAC 57.480 40.909 0.00 0.00 41.17 3.82
245 246 4.320861 CGAAAATGAGGTAAATGCACCACA 60.321 41.667 0.00 0.00 42.31 4.17
246 247 4.165779 CGAAAATGAGGTAAATGCACCAC 58.834 43.478 0.00 0.00 41.40 4.16
247 248 3.366883 GCGAAAATGAGGTAAATGCACCA 60.367 43.478 0.00 0.00 41.40 4.17
248 249 3.179048 GCGAAAATGAGGTAAATGCACC 58.821 45.455 0.00 0.00 39.02 5.01
249 250 3.119495 AGGCGAAAATGAGGTAAATGCAC 60.119 43.478 0.00 0.00 0.00 4.57
250 251 3.088532 AGGCGAAAATGAGGTAAATGCA 58.911 40.909 0.00 0.00 0.00 3.96
251 252 3.128589 TCAGGCGAAAATGAGGTAAATGC 59.871 43.478 0.00 0.00 0.00 3.56
252 253 4.963276 TCAGGCGAAAATGAGGTAAATG 57.037 40.909 0.00 0.00 0.00 2.32
253 254 6.530019 AATTCAGGCGAAAATGAGGTAAAT 57.470 33.333 0.00 0.00 34.01 1.40
254 255 5.975693 AATTCAGGCGAAAATGAGGTAAA 57.024 34.783 0.00 0.00 34.01 2.01
255 256 8.918202 ATATAATTCAGGCGAAAATGAGGTAA 57.082 30.769 0.00 0.00 34.01 2.85
256 257 7.606456 GGATATAATTCAGGCGAAAATGAGGTA 59.394 37.037 0.00 0.00 34.01 3.08
257 258 6.431234 GGATATAATTCAGGCGAAAATGAGGT 59.569 38.462 0.00 0.00 34.01 3.85
258 259 6.656693 AGGATATAATTCAGGCGAAAATGAGG 59.343 38.462 0.00 0.00 34.01 3.86
259 260 7.678947 AGGATATAATTCAGGCGAAAATGAG 57.321 36.000 0.00 0.00 34.01 2.90
260 261 7.939039 AGAAGGATATAATTCAGGCGAAAATGA 59.061 33.333 0.00 0.00 34.01 2.57
402 403 5.680594 TTCCTTGGATTTGGATTGGATTG 57.319 39.130 0.00 0.00 31.76 2.67
403 404 6.700845 TTTTCCTTGGATTTGGATTGGATT 57.299 33.333 0.00 0.00 31.76 3.01
404 405 5.338626 GCTTTTCCTTGGATTTGGATTGGAT 60.339 40.000 0.00 0.00 31.76 3.41
405 406 4.020307 GCTTTTCCTTGGATTTGGATTGGA 60.020 41.667 0.00 0.00 31.76 3.53
406 407 4.256110 GCTTTTCCTTGGATTTGGATTGG 58.744 43.478 0.00 0.00 31.76 3.16
782 783 5.123227 ACATCTAGTAGTGCTGTCTCTCTC 58.877 45.833 0.00 0.00 0.00 3.20
783 784 5.110814 ACATCTAGTAGTGCTGTCTCTCT 57.889 43.478 0.00 0.00 0.00 3.10
824 827 1.972660 GACGGGGTGGAGAGGAATGG 61.973 65.000 0.00 0.00 0.00 3.16
858 879 4.037684 AGAGAATAAACTATGGGACGGACG 59.962 45.833 0.00 0.00 0.00 4.79
989 1010 3.636929 AATCCGGCAATGCGTGGGA 62.637 57.895 13.87 13.13 0.00 4.37
1045 1066 1.673808 CCCCGTACTACTCCTGCCAC 61.674 65.000 0.00 0.00 0.00 5.01
1072 1096 1.114722 CCAACCCAGCCAAGAAGCAA 61.115 55.000 0.00 0.00 34.23 3.91
1208 1241 0.822164 TTTCGGACCGATCTTCCTCC 59.178 55.000 19.12 0.00 35.23 4.30
1221 1254 1.134367 ACGAGAAGATGCGATTTCGGA 59.866 47.619 1.75 0.00 45.29 4.55
1228 1261 1.131315 CAGAGACACGAGAAGATGCGA 59.869 52.381 0.00 0.00 0.00 5.10
1256 1289 3.414136 AACCAGCCCGCTGACAACA 62.414 57.895 18.19 0.00 46.30 3.33
1257 1290 2.594592 AACCAGCCCGCTGACAAC 60.595 61.111 18.19 0.00 46.30 3.32
1258 1291 2.594303 CAACCAGCCCGCTGACAA 60.594 61.111 18.19 0.00 46.30 3.18
1283 1316 5.827568 AAATTCTTGCTACAATTGCGTTG 57.172 34.783 5.05 0.57 43.64 4.10
1316 1372 5.696270 TCTGCAGTGTTCACATAAGTAACAG 59.304 40.000 14.67 0.00 34.01 3.16
1451 1521 6.352516 ACAGATTTACCATCTCACCTTCATC 58.647 40.000 0.00 0.00 0.00 2.92
1470 1540 1.909700 ATGTGGTTGCGGAAACAGAT 58.090 45.000 11.67 11.67 40.86 2.90
1508 1578 4.389890 AATGCAGTTTGCTGAAGACAAA 57.610 36.364 2.48 0.00 45.31 2.83
1525 1596 0.037975 CAACCCTGGAGTGCAAATGC 60.038 55.000 0.00 0.00 42.50 3.56
1532 1603 2.358737 GGCGACAACCCTGGAGTG 60.359 66.667 0.00 0.00 0.00 3.51
1655 1726 5.221087 GGATGAAAACAACGTCCAAAGGTAA 60.221 40.000 0.00 0.00 41.50 2.85
1838 1957 7.286775 AGTGGTTAAACTTGCTCAATTAGGAAA 59.713 33.333 0.00 0.00 34.81 3.13
1954 3345 8.229811 CGTTCTAAAAGATGATGTCATGTTTCA 58.770 33.333 15.66 4.03 45.36 2.69
1970 3361 5.283717 CGATGCCATGTTTTCGTTCTAAAAG 59.716 40.000 0.00 0.00 0.00 2.27
2005 3396 3.508840 CTGAAACGATGCCCCCGC 61.509 66.667 0.00 0.00 0.00 6.13
2006 3397 2.046314 ACTGAAACGATGCCCCCG 60.046 61.111 0.00 0.00 0.00 5.73
2007 3398 0.322546 AAGACTGAAACGATGCCCCC 60.323 55.000 0.00 0.00 0.00 5.40
2008 3399 2.396590 TAAGACTGAAACGATGCCCC 57.603 50.000 0.00 0.00 0.00 5.80
2009 3400 4.965119 ATTTAAGACTGAAACGATGCCC 57.035 40.909 0.00 0.00 0.00 5.36
2064 3455 9.727627 CTTAAGAAATGTGAGGCTCATTTAATC 57.272 33.333 21.84 14.80 42.90 1.75
2082 3473 6.886178 AATGGGAGTAGCTACCTTAAGAAA 57.114 37.500 20.31 0.00 34.99 2.52
2098 3491 8.790718 CATTTCTGGATAACTGATTAATGGGAG 58.209 37.037 0.00 0.00 29.05 4.30
2147 3540 7.391554 GGAGCATATGACAGATTTAATGCCTAA 59.608 37.037 6.97 0.00 40.38 2.69
2148 3541 6.881065 GGAGCATATGACAGATTTAATGCCTA 59.119 38.462 6.97 0.00 40.38 3.93
2160 3553 9.689976 GCTGTAATATATAGGAGCATATGACAG 57.310 37.037 6.97 12.08 43.60 3.51
2324 3717 7.631717 ACTCCTGGTTTGAATTAAAGATAGC 57.368 36.000 0.00 0.00 0.00 2.97
2327 3720 9.807921 TCTTAACTCCTGGTTTGAATTAAAGAT 57.192 29.630 0.00 0.00 39.17 2.40
2496 3889 7.857885 CAGGTAGAGACAAAAATTCTGTTCAAC 59.142 37.037 0.00 0.00 0.00 3.18
3405 4983 3.248602 GCATCCCTGTACGATGATTTGAC 59.751 47.826 11.94 0.00 39.64 3.18
3677 5261 0.178992 TGTTTCCAAGACAGCCCAGG 60.179 55.000 0.00 0.00 0.00 4.45
3707 5291 9.846248 GTTACAGCAATACTTCAATCTGATTTT 57.154 29.630 0.00 0.00 0.00 1.82
3890 5695 1.498865 CGAAAACAGTGTGAGCCGCT 61.499 55.000 0.00 0.00 0.00 5.52
3927 5732 0.175760 TCTCAGGAATTCTTCGCCCG 59.824 55.000 5.23 0.00 0.00 6.13
4321 6416 6.040278 TGCAGAAATGAACAACTATGGTTTGA 59.960 34.615 0.00 0.00 32.73 2.69
4336 6431 5.512921 GGGAAGGGAAATTTTGCAGAAATGA 60.513 40.000 2.98 0.00 0.00 2.57
4339 6434 3.973305 AGGGAAGGGAAATTTTGCAGAAA 59.027 39.130 2.98 0.00 0.00 2.52
4421 6516 1.011293 TCTTCCCCTCATTCCATCCCT 59.989 52.381 0.00 0.00 0.00 4.20
4554 6649 7.361286 GCTTCCTTGTCATGGAACTACTTAAAG 60.361 40.741 14.63 4.96 38.53 1.85
4686 6782 0.095935 CGAACAGCCGCTCAATCTTG 59.904 55.000 0.00 0.00 0.00 3.02
4747 6844 3.735514 GCTTTTGTGCACGTTCCCTAAAA 60.736 43.478 13.13 10.16 0.00 1.52
4821 6918 3.364889 TGTCGAGCCGTTTAGGATATG 57.635 47.619 0.00 0.00 39.82 1.78
4868 6965 0.821711 TGGGTTCTTTGTGGCTTCCG 60.822 55.000 0.00 0.00 0.00 4.30
4941 7042 9.799106 AGGATTCTCAGAATTTTTCTTAAGTGA 57.201 29.630 0.16 0.00 38.11 3.41
4958 7059 9.627123 TTTGAAAGAGTTTTTCTAGGATTCTCA 57.373 29.630 7.57 0.00 34.14 3.27
4981 7089 2.558359 AGGGCCTCTTTTGTTCGATTTG 59.442 45.455 0.00 0.00 0.00 2.32
4991 7099 0.332632 TGCATGCTAGGGCCTCTTTT 59.667 50.000 20.33 0.00 37.74 2.27
5018 7126 1.401018 GCAGTGAACGCCAATGGTAAC 60.401 52.381 0.00 0.00 40.88 2.50
5116 7224 9.698617 GGAACTTTAATACGTTAGCTTATTGTG 57.301 33.333 0.00 0.00 0.00 3.33
5127 7259 7.556733 TCACAAACTGGAACTTTAATACGTT 57.443 32.000 0.00 0.00 0.00 3.99
5128 7260 7.581476 CATCACAAACTGGAACTTTAATACGT 58.419 34.615 0.00 0.00 0.00 3.57
5129 7261 6.523201 GCATCACAAACTGGAACTTTAATACG 59.477 38.462 0.00 0.00 0.00 3.06
5131 7263 7.517614 TGCATCACAAACTGGAACTTTAATA 57.482 32.000 0.00 0.00 0.00 0.98
5132 7264 6.403866 TGCATCACAAACTGGAACTTTAAT 57.596 33.333 0.00 0.00 0.00 1.40
5133 7265 5.843673 TGCATCACAAACTGGAACTTTAA 57.156 34.783 0.00 0.00 0.00 1.52
5135 7267 4.942761 ATGCATCACAAACTGGAACTTT 57.057 36.364 0.00 0.00 0.00 2.66
5137 7269 3.256631 GGAATGCATCACAAACTGGAACT 59.743 43.478 0.00 0.00 0.00 3.01
5139 7271 3.229293 TGGAATGCATCACAAACTGGAA 58.771 40.909 0.00 0.00 0.00 3.53
5141 7273 3.880047 ATGGAATGCATCACAAACTGG 57.120 42.857 0.00 0.00 0.00 4.00
5142 7274 3.369756 GCAATGGAATGCATCACAAACTG 59.630 43.478 0.00 3.48 45.70 3.16
5143 7275 3.592059 GCAATGGAATGCATCACAAACT 58.408 40.909 0.00 0.00 45.70 2.66
5214 7356 0.033504 TTGTGAAGTGCCGTCTCCTC 59.966 55.000 0.00 0.00 0.00 3.71
5233 7375 3.288964 CTCTCCACGGTAGTAGGACAAT 58.711 50.000 0.00 0.00 0.00 2.71
5328 7470 0.034616 AGCATTAGATGAGCGCCTCC 59.965 55.000 2.29 0.00 0.00 4.30
5375 7517 4.189231 CCCTTATTCTTGTCCGTTGGTAG 58.811 47.826 0.00 0.00 0.00 3.18
5491 7639 6.920569 AAATGGGATATCGTCACTTTGTAC 57.079 37.500 0.00 0.00 28.91 2.90
6236 8402 4.037923 CACCCATGTGCATTTCTATTACCC 59.962 45.833 0.00 0.00 35.31 3.69
6255 8421 7.339466 GGTAATACATTATGAATCCATCCACCC 59.661 40.741 0.00 0.00 34.31 4.61
6327 8493 7.303182 TCTCATGGTCAAGTTTAAGAAGAGA 57.697 36.000 0.00 0.00 0.00 3.10
6529 8695 1.671328 GAGGATGTCGTCGAGTCATCA 59.329 52.381 20.89 6.57 43.86 3.07
6540 8706 3.573538 AGAATGGATCTGAGAGGATGTCG 59.426 47.826 0.00 0.00 36.88 4.35
6598 8764 5.132502 CCAATCTAGTTGCCACCATATGAA 58.867 41.667 3.65 0.00 36.46 2.57
6642 8808 2.967615 GAAGTAGATGGCGGCGGC 60.968 66.667 27.76 27.76 38.90 6.53
6727 8893 4.459685 TCTGTAGCTCTACCAACTGAAGAC 59.540 45.833 0.00 0.00 35.26 3.01
6760 8926 1.067776 GTGGACAGTGGTACGAAGAGG 60.068 57.143 0.00 0.00 0.00 3.69
6908 9074 8.940397 ATATAGGTGGTATTTGAATTCAAGGG 57.060 34.615 19.64 0.00 37.15 3.95
7220 9386 3.141398 TCTCTGTGAAGTGATTTGTGCC 58.859 45.455 0.00 0.00 0.00 5.01
7225 9391 3.071023 TCGGGTTCTCTGTGAAGTGATTT 59.929 43.478 0.00 0.00 35.01 2.17
7273 9439 1.134521 TGGTCATATTGGCTCGGTGAC 60.135 52.381 0.00 0.00 38.69 3.67
7347 9514 1.807142 GCTCCACCAAGCAACTAGTTC 59.193 52.381 4.77 1.12 42.05 3.01
7351 9518 1.055849 TGAGCTCCACCAAGCAACTA 58.944 50.000 12.15 0.00 45.00 2.24
7564 9731 6.920758 TGTATGTAGGTTTTTGTTGCATTGTC 59.079 34.615 0.00 0.00 0.00 3.18
7590 9759 0.825840 CCGAGGGGAAAGGCAACAAA 60.826 55.000 0.00 0.00 34.58 2.83
7619 9789 4.986591 AGTGGGACCTATATATAGCCCA 57.013 45.455 24.04 24.04 39.12 5.36
7658 9828 1.628846 TCCAGGTAAGGTGAAGAAGCC 59.371 52.381 0.00 0.00 0.00 4.35
7667 9845 2.561858 GTTCGAAGACTCCAGGTAAGGT 59.438 50.000 0.00 0.00 34.32 3.50
7671 9849 2.297698 TGGTTCGAAGACTCCAGGTA 57.702 50.000 0.00 0.00 36.23 3.08
7675 9853 3.427573 TCTGTATGGTTCGAAGACTCCA 58.572 45.455 7.59 7.59 42.91 3.86
7689 9867 1.211457 AGCCTCCAAAGCCTCTGTATG 59.789 52.381 0.00 0.00 0.00 2.39
7699 9877 4.229876 GTTTCGATTTTCAGCCTCCAAAG 58.770 43.478 0.00 0.00 0.00 2.77
7701 9879 2.225491 CGTTTCGATTTTCAGCCTCCAA 59.775 45.455 0.00 0.00 0.00 3.53
7709 9887 5.822278 TCATGGAAAACGTTTCGATTTTCA 58.178 33.333 15.01 3.39 43.55 2.69
7717 9895 7.662761 CCGAAAATTATCATGGAAAACGTTTC 58.337 34.615 15.01 7.87 0.00 2.78
7723 9901 7.556275 AGAGTAGCCGAAAATTATCATGGAAAA 59.444 33.333 0.00 0.00 0.00 2.29
7740 9918 1.394618 AGTTGCCTCTAGAGTAGCCG 58.605 55.000 18.42 3.92 0.00 5.52
7745 9923 4.399934 GTGCTAGTTAGTTGCCTCTAGAGT 59.600 45.833 18.42 2.09 33.81 3.24
7756 9934 6.070938 AGGAAATACTTCGGTGCTAGTTAGTT 60.071 38.462 0.00 0.00 31.77 2.24
7769 9947 4.631813 GGGCATGCTATAGGAAATACTTCG 59.368 45.833 18.92 0.00 31.77 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.