Multiple sequence alignment - TraesCS3D01G330800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G330800 chr3D 100.000 4034 0 0 1 4034 443422680 443418647 0.000000e+00 7450.0
1 TraesCS3D01G330800 chr3D 90.347 1295 89 21 1526 2808 443319404 443318134 0.000000e+00 1666.0
2 TraesCS3D01G330800 chr3D 84.167 1320 143 30 1502 2806 443430664 443429396 0.000000e+00 1219.0
3 TraesCS3D01G330800 chr3D 82.071 1333 160 41 1496 2806 443363859 443362584 0.000000e+00 1064.0
4 TraesCS3D01G330800 chr3D 84.094 855 90 24 1256 2086 443438564 443437732 0.000000e+00 784.0
5 TraesCS3D01G330800 chr3D 87.005 631 65 11 2810 3429 443441818 443441194 0.000000e+00 695.0
6 TraesCS3D01G330800 chr3D 94.130 460 19 4 3137 3590 443295485 443295028 0.000000e+00 693.0
7 TraesCS3D01G330800 chr3D 85.215 629 80 9 2807 3429 443362310 443361689 5.690000e-178 634.0
8 TraesCS3D01G330800 chr3D 92.627 434 22 4 760 1184 443364718 443364286 2.060000e-172 616.0
9 TraesCS3D01G330800 chr3D 87.121 528 61 4 2807 3327 443429025 443428498 3.470000e-165 592.0
10 TraesCS3D01G330800 chr3D 89.895 287 13 6 301 571 443365095 443364809 4.960000e-94 355.0
11 TraesCS3D01G330800 chr3D 91.414 198 16 1 2807 3003 443306663 443306466 1.850000e-68 270.0
12 TraesCS3D01G330800 chr3D 94.872 156 7 1 1232 1387 443364153 443363999 4.030000e-60 243.0
13 TraesCS3D01G330800 chr3D 83.456 272 9 4 3586 3857 443294835 443294600 1.890000e-53 220.0
14 TraesCS3D01G330800 chr3D 79.494 356 37 24 1257 1584 443443580 443443233 1.890000e-53 220.0
15 TraesCS3D01G330800 chr3D 84.951 206 16 10 1279 1481 443319594 443319401 1.140000e-45 195.0
16 TraesCS3D01G330800 chr3D 82.407 216 20 7 970 1167 443443814 443443599 5.360000e-39 172.0
17 TraesCS3D01G330800 chr3D 92.473 93 3 2 1167 1255 44891306 44891214 3.270000e-26 130.0
18 TraesCS3D01G330800 chr3D 85.156 128 5 1 3 116 443366592 443366465 7.080000e-23 119.0
19 TraesCS3D01G330800 chr3D 95.000 60 3 0 599 658 443364812 443364753 1.190000e-15 95.3
20 TraesCS3D01G330800 chr3D 100.000 43 0 0 696 738 443364759 443364717 3.340000e-11 80.5
21 TraesCS3D01G330800 chr3A 92.957 1505 69 10 2356 3857 584355020 584353550 0.000000e+00 2158.0
22 TraesCS3D01G330800 chr3A 86.458 1152 121 21 1667 2806 584377610 584376482 0.000000e+00 1230.0
23 TraesCS3D01G330800 chr3A 88.832 788 77 8 1416 2201 584356082 584355304 0.000000e+00 957.0
24 TraesCS3D01G330800 chr3A 84.923 650 78 12 2807 3446 584376113 584375474 1.220000e-179 640.0
25 TraesCS3D01G330800 chr3A 87.764 237 23 3 937 1167 584378249 584378013 5.140000e-69 272.0
26 TraesCS3D01G330800 chr3A 80.707 311 34 14 1298 1591 584377959 584377658 6.790000e-53 219.0
27 TraesCS3D01G330800 chr3A 85.311 177 14 4 996 1160 584475703 584475527 5.360000e-39 172.0
28 TraesCS3D01G330800 chr3A 90.441 136 3 5 1291 1420 584372973 584372842 1.930000e-38 171.0
29 TraesCS3D01G330800 chr3A 83.838 99 12 2 1168 1262 13127210 13127112 1.540000e-14 91.6
30 TraesCS3D01G330800 chr3A 82.828 99 13 2 1168 1262 13112769 13112671 7.180000e-13 86.1
31 TraesCS3D01G330800 chr3A 100.000 36 0 0 3852 3887 584353516 584353481 2.600000e-07 67.6
32 TraesCS3D01G330800 chr3B 91.997 1287 94 6 1529 2808 581091726 581090442 0.000000e+00 1797.0
33 TraesCS3D01G330800 chr3B 85.586 1561 149 39 1281 2806 710388435 710389954 0.000000e+00 1567.0
34 TraesCS3D01G330800 chr3B 92.797 944 55 8 2807 3745 581089869 581088934 0.000000e+00 1354.0
35 TraesCS3D01G330800 chr3B 84.179 1340 145 33 1482 2806 581134403 581133116 0.000000e+00 1238.0
36 TraesCS3D01G330800 chr3B 82.503 983 111 33 1400 2338 581127751 581126786 0.000000e+00 806.0
37 TraesCS3D01G330800 chr3B 89.669 513 51 2 2808 3318 710390554 710391066 0.000000e+00 652.0
38 TraesCS3D01G330800 chr3B 87.288 236 25 4 936 1167 581135068 581134834 8.600000e-67 265.0
39 TraesCS3D01G330800 chr3B 84.831 178 17 5 995 1162 710388214 710388391 1.930000e-38 171.0
40 TraesCS3D01G330800 chr3B 88.722 133 12 3 1264 1395 581127994 581127864 4.170000e-35 159.0
41 TraesCS3D01G330800 chr3B 91.837 98 0 2 3760 3857 581088889 581088800 3.270000e-26 130.0
42 TraesCS3D01G330800 chr3B 90.625 96 3 4 1169 1259 553730586 553730492 5.480000e-24 122.0
43 TraesCS3D01G330800 chr3B 88.542 96 7 2 1169 1260 132527384 132527289 3.300000e-21 113.0
44 TraesCS3D01G330800 chr5D 82.365 1514 174 59 1297 2758 469730052 469728580 0.000000e+00 1230.0
45 TraesCS3D01G330800 chr5D 85.802 655 68 14 2807 3446 469728568 469727924 0.000000e+00 671.0
46 TraesCS3D01G330800 chr5D 93.836 146 8 1 3888 4033 544684866 544685010 6.790000e-53 219.0
47 TraesCS3D01G330800 chr5D 92.517 147 9 1 3888 4034 250594778 250594634 4.090000e-50 209.0
48 TraesCS3D01G330800 chr5D 90.299 134 13 0 1038 1171 469730256 469730123 4.140000e-40 176.0
49 TraesCS3D01G330800 chr5D 77.093 227 37 13 108 332 244623819 244623606 2.550000e-22 117.0
50 TraesCS3D01G330800 chr5D 73.684 323 53 13 3536 3857 469727872 469727581 3.320000e-16 97.1
51 TraesCS3D01G330800 chr5B 83.284 1340 147 34 1495 2806 577365783 577364493 0.000000e+00 1162.0
52 TraesCS3D01G330800 chr5B 87.195 164 8 7 1271 1428 577366306 577366150 1.490000e-39 174.0
53 TraesCS3D01G330800 chr5B 90.769 130 12 0 1038 1167 577366473 577366344 1.490000e-39 174.0
54 TraesCS3D01G330800 chr5B 80.531 226 28 10 108 332 278011535 278011325 4.170000e-35 159.0
55 TraesCS3D01G330800 chr5B 89.109 101 7 2 1163 1259 697972290 697972390 5.480000e-24 122.0
56 TraesCS3D01G330800 chr5B 81.250 112 12 4 3746 3857 577359221 577359119 9.290000e-12 82.4
57 TraesCS3D01G330800 chr5A 83.544 632 65 13 2807 3426 590677659 590677055 4.560000e-154 555.0
58 TraesCS3D01G330800 chr5A 80.000 330 29 18 1271 1579 590679199 590678886 4.090000e-50 209.0
59 TraesCS3D01G330800 chr5A 80.579 242 32 10 939 1167 590679477 590679238 5.360000e-39 172.0
60 TraesCS3D01G330800 chr5A 77.533 227 38 11 108 332 328804353 328804138 1.520000e-24 124.0
61 TraesCS3D01G330800 chr5A 87.129 101 8 2 1170 1267 607277582 607277484 4.260000e-20 110.0
62 TraesCS3D01G330800 chr5A 84.848 99 8 5 1169 1262 670270015 670269919 4.290000e-15 93.5
63 TraesCS3D01G330800 chr5A 82.524 103 9 4 3752 3854 590676501 590676408 9.290000e-12 82.4
64 TraesCS3D01G330800 chr6D 86.164 318 30 3 81 398 466224663 466224966 8.360000e-87 331.0
65 TraesCS3D01G330800 chr6B 86.164 318 31 6 81 398 711317107 711317411 8.360000e-87 331.0
66 TraesCS3D01G330800 chr6B 81.638 403 49 12 81 482 710663597 710663975 1.090000e-80 311.0
67 TraesCS3D01G330800 chr6B 84.519 239 26 4 164 402 711383680 711383453 4.060000e-55 226.0
68 TraesCS3D01G330800 chr6B 90.196 102 4 3 1161 1256 342998213 342998112 1.180000e-25 128.0
69 TraesCS3D01G330800 chr4D 92.903 155 7 3 3881 4034 396428922 396428771 5.250000e-54 222.0
70 TraesCS3D01G330800 chr7D 92.517 147 10 1 3888 4034 26402010 26402155 4.090000e-50 209.0
71 TraesCS3D01G330800 chr1D 91.837 147 10 1 3888 4034 19406789 19406645 1.900000e-48 204.0
72 TraesCS3D01G330800 chr7B 90.789 152 11 3 3885 4034 637368820 637368970 2.460000e-47 200.0
73 TraesCS3D01G330800 chr7B 90.541 148 13 1 3887 4034 695829132 695829278 1.140000e-45 195.0
74 TraesCS3D01G330800 chr7B 90.541 148 13 1 3887 4034 695850831 695850977 1.140000e-45 195.0
75 TraesCS3D01G330800 chr7B 89.542 153 14 2 3883 4034 141816509 141816660 4.110000e-45 193.0
76 TraesCS3D01G330800 chr7B 92.391 92 3 4 1167 1254 611720342 611720251 1.180000e-25 128.0
77 TraesCS3D01G330800 chrUn 91.667 96 4 2 1167 1258 135090805 135090710 3.270000e-26 130.0
78 TraesCS3D01G330800 chrUn 91.667 96 4 2 1167 1258 152687661 152687566 3.270000e-26 130.0
79 TraesCS3D01G330800 chr4B 91.667 96 2 4 1163 1253 308049634 308049728 1.180000e-25 128.0
80 TraesCS3D01G330800 chr1B 88.571 105 5 7 1152 1250 132283257 132283154 1.970000e-23 121.0
81 TraesCS3D01G330800 chr2D 89.773 88 5 4 1169 1252 645531768 645531855 4.260000e-20 110.0
82 TraesCS3D01G330800 chr2D 89.796 49 1 4 131 177 615124051 615124005 4.350000e-05 60.2
83 TraesCS3D01G330800 chr2B 86.139 101 7 5 1170 1264 315974249 315974348 7.130000e-18 102.0
84 TraesCS3D01G330800 chr2B 85.000 100 10 3 1170 1265 195688005 195687907 3.320000e-16 97.1
85 TraesCS3D01G330800 chr2B 84.694 98 11 2 1167 1260 720236360 720236263 1.190000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G330800 chr3D 443418647 443422680 4033 True 7450.000000 7450 100.000000 1 4034 1 chr3D.!!$R3 4033
1 TraesCS3D01G330800 chr3D 443318134 443319594 1460 True 930.500000 1666 87.649000 1279 2808 2 chr3D.!!$R5 1529
2 TraesCS3D01G330800 chr3D 443428498 443430664 2166 True 905.500000 1219 85.644000 1502 3327 2 chr3D.!!$R7 1825
3 TraesCS3D01G330800 chr3D 443437732 443443814 6082 True 467.750000 784 83.250000 970 3429 4 chr3D.!!$R8 2459
4 TraesCS3D01G330800 chr3D 443294600 443295485 885 True 456.500000 693 88.793000 3137 3857 2 chr3D.!!$R4 720
5 TraesCS3D01G330800 chr3D 443361689 443366592 4903 True 400.850000 1064 90.604500 3 3429 8 chr3D.!!$R6 3426
6 TraesCS3D01G330800 chr3A 584353481 584356082 2601 True 1060.866667 2158 93.929667 1416 3887 3 chr3A.!!$R4 2471
7 TraesCS3D01G330800 chr3A 584372842 584378249 5407 True 506.400000 1230 86.058600 937 3446 5 chr3A.!!$R5 2509
8 TraesCS3D01G330800 chr3B 581088800 581091726 2926 True 1093.666667 1797 92.210333 1529 3857 3 chr3B.!!$R3 2328
9 TraesCS3D01G330800 chr3B 710388214 710391066 2852 False 796.666667 1567 86.695333 995 3318 3 chr3B.!!$F1 2323
10 TraesCS3D01G330800 chr3B 581133116 581135068 1952 True 751.500000 1238 85.733500 936 2806 2 chr3B.!!$R5 1870
11 TraesCS3D01G330800 chr3B 581126786 581127994 1208 True 482.500000 806 85.612500 1264 2338 2 chr3B.!!$R4 1074
12 TraesCS3D01G330800 chr5D 469727581 469730256 2675 True 543.525000 1230 83.037500 1038 3857 4 chr5D.!!$R3 2819
13 TraesCS3D01G330800 chr5B 577364493 577366473 1980 True 503.333333 1162 87.082667 1038 2806 3 chr5B.!!$R3 1768
14 TraesCS3D01G330800 chr5A 590676408 590679477 3069 True 254.600000 555 81.661750 939 3854 4 chr5A.!!$R4 2915

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
813 2029 0.033601 AAGGGGCAGTTGAACACACA 60.034 50.0 0.0 0.0 0.00 3.72 F
1184 2442 0.549950 CTACTACTCCCTCCGTCCCA 59.450 60.0 0.0 0.0 0.00 4.37 F
1916 3890 0.622665 CCATCTCCTGGTCAAGGCTT 59.377 55.0 0.0 0.0 46.92 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2503 4685 0.321564 TCGTCCAAGATGCAACCCTG 60.322 55.000 0.00 0.0 0.0 4.45 R
2610 4792 2.033448 CCCCAGCGGTGCACTTTA 59.967 61.111 17.98 0.0 0.0 1.85 R
3548 6914 0.321919 GCCACTCACAGCATCTTGGA 60.322 55.000 0.00 0.0 0.0 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 81 2.097954 ACACACACACATGCACTTCTTG 59.902 45.455 0.00 0.00 0.00 3.02
93 108 4.577988 TCGTCCCCTCCAAAATAATTGA 57.422 40.909 0.00 0.00 0.00 2.57
94 109 5.124036 TCGTCCCCTCCAAAATAATTGAT 57.876 39.130 0.00 0.00 0.00 2.57
133 181 9.985730 TCCTAAGTTAAACTTCGTTAGATTTGA 57.014 29.630 0.00 0.00 39.51 2.69
136 184 7.113704 AGTTAAACTTCGTTAGATTTGACCG 57.886 36.000 0.00 0.00 0.00 4.79
137 185 6.925165 AGTTAAACTTCGTTAGATTTGACCGA 59.075 34.615 0.00 0.00 0.00 4.69
146 956 8.382030 TCGTTAGATTTGACCGAGTATATACA 57.618 34.615 15.18 0.00 0.00 2.29
147 957 8.501580 TCGTTAGATTTGACCGAGTATATACAG 58.498 37.037 15.18 8.26 0.00 2.74
180 990 9.807649 ATCAACATCTATAAAACCAAATTCAGC 57.192 29.630 0.00 0.00 0.00 4.26
181 991 9.023962 TCAACATCTATAAAACCAAATTCAGCT 57.976 29.630 0.00 0.00 0.00 4.24
265 1242 5.741011 TGCGGATTATTCTAGAAACTTGGT 58.259 37.500 9.71 0.00 0.00 3.67
266 1243 5.815740 TGCGGATTATTCTAGAAACTTGGTC 59.184 40.000 9.71 2.76 0.00 4.02
268 1245 6.018669 GCGGATTATTCTAGAAACTTGGTCAG 60.019 42.308 9.71 4.77 0.00 3.51
270 1247 7.764443 CGGATTATTCTAGAAACTTGGTCAGAA 59.236 37.037 9.71 0.00 0.00 3.02
271 1248 9.620259 GGATTATTCTAGAAACTTGGTCAGAAT 57.380 33.333 9.71 0.00 36.82 2.40
286 1263 9.546428 CTTGGTCAGAATTTAAAAATTGACCTT 57.454 29.630 29.06 7.64 46.61 3.50
287 1264 8.885494 TGGTCAGAATTTAAAAATTGACCTTG 57.115 30.769 29.06 10.86 46.61 3.61
297 1274 9.686683 TTTAAAAATTGACCTTGAAAAATCCCA 57.313 25.926 0.00 0.00 0.00 4.37
298 1275 9.686683 TTAAAAATTGACCTTGAAAAATCCCAA 57.313 25.926 0.00 0.00 0.00 4.12
368 1568 2.436417 CCTTTGTATGTGGACTGTGGG 58.564 52.381 0.00 0.00 0.00 4.61
374 1574 2.359230 GTGGACTGTGGGCTGCTC 60.359 66.667 0.00 0.00 0.00 4.26
401 1601 5.302313 GCCATCCAGTAGTAAGTAGTAAGCT 59.698 44.000 0.00 0.00 0.00 3.74
402 1602 6.736243 GCCATCCAGTAGTAAGTAGTAAGCTG 60.736 46.154 0.00 0.00 0.00 4.24
403 1603 6.321690 CCATCCAGTAGTAAGTAGTAAGCTGT 59.678 42.308 0.00 0.00 0.00 4.40
404 1604 7.147880 CCATCCAGTAGTAAGTAGTAAGCTGTT 60.148 40.741 0.00 0.00 0.00 3.16
406 1606 6.376581 TCCAGTAGTAAGTAGTAAGCTGTTCC 59.623 42.308 0.00 0.00 0.00 3.62
407 1607 6.152323 CCAGTAGTAAGTAGTAAGCTGTTCCA 59.848 42.308 0.00 0.00 0.00 3.53
408 1608 7.251994 CAGTAGTAAGTAGTAAGCTGTTCCAG 58.748 42.308 0.00 0.00 34.12 3.86
410 1610 3.336138 AAGTAGTAAGCTGTTCCAGGC 57.664 47.619 0.00 0.00 31.21 4.85
411 1611 2.541466 AGTAGTAAGCTGTTCCAGGCT 58.459 47.619 0.00 0.00 40.85 4.58
430 1645 4.998033 AGGCTAGAAAGAAAGAAAGAACGG 59.002 41.667 0.00 0.00 0.00 4.44
437 1652 2.291741 AGAAAGAAAGAACGGCTGCAAG 59.708 45.455 0.50 0.00 0.00 4.01
443 1658 1.680338 AGAACGGCTGCAAGAAAACT 58.320 45.000 0.50 0.00 34.07 2.66
558 1774 0.886490 GAAGCCACTATGGATGCCGG 60.886 60.000 0.00 0.00 40.96 6.13
571 1787 2.432628 GCCGGTCGTCTTCCACTG 60.433 66.667 1.90 0.00 0.00 3.66
573 1789 1.890894 CCGGTCGTCTTCCACTGAT 59.109 57.895 0.00 0.00 0.00 2.90
574 1790 0.246635 CCGGTCGTCTTCCACTGATT 59.753 55.000 0.00 0.00 0.00 2.57
575 1791 1.350193 CGGTCGTCTTCCACTGATTG 58.650 55.000 0.00 0.00 0.00 2.67
577 1793 2.767505 GGTCGTCTTCCACTGATTGTT 58.232 47.619 0.00 0.00 0.00 2.83
578 1794 3.139077 GGTCGTCTTCCACTGATTGTTT 58.861 45.455 0.00 0.00 0.00 2.83
579 1795 3.186613 GGTCGTCTTCCACTGATTGTTTC 59.813 47.826 0.00 0.00 0.00 2.78
580 1796 3.186613 GTCGTCTTCCACTGATTGTTTCC 59.813 47.826 0.00 0.00 0.00 3.13
581 1797 2.157668 CGTCTTCCACTGATTGTTTCCG 59.842 50.000 0.00 0.00 0.00 4.30
582 1798 2.095718 GTCTTCCACTGATTGTTTCCGC 60.096 50.000 0.00 0.00 0.00 5.54
583 1799 0.871722 TTCCACTGATTGTTTCCGCG 59.128 50.000 0.00 0.00 0.00 6.46
584 1800 0.953471 TCCACTGATTGTTTCCGCGG 60.953 55.000 22.12 22.12 0.00 6.46
585 1801 1.234615 CCACTGATTGTTTCCGCGGT 61.235 55.000 27.15 3.60 0.00 5.68
586 1802 0.591170 CACTGATTGTTTCCGCGGTT 59.409 50.000 27.15 4.05 0.00 4.44
587 1803 0.872388 ACTGATTGTTTCCGCGGTTC 59.128 50.000 27.15 16.58 0.00 3.62
588 1804 1.156736 CTGATTGTTTCCGCGGTTCT 58.843 50.000 27.15 5.03 0.00 3.01
589 1805 0.871722 TGATTGTTTCCGCGGTTCTG 59.128 50.000 27.15 0.00 0.00 3.02
590 1806 0.454452 GATTGTTTCCGCGGTTCTGC 60.454 55.000 27.15 12.50 0.00 4.26
591 1807 0.889186 ATTGTTTCCGCGGTTCTGCT 60.889 50.000 27.15 4.51 0.00 4.24
592 1808 0.249953 TTGTTTCCGCGGTTCTGCTA 60.250 50.000 27.15 0.00 0.00 3.49
593 1809 0.669318 TGTTTCCGCGGTTCTGCTAG 60.669 55.000 27.15 0.00 0.00 3.42
594 1810 0.389426 GTTTCCGCGGTTCTGCTAGA 60.389 55.000 27.15 0.00 0.00 2.43
595 1811 0.108804 TTTCCGCGGTTCTGCTAGAG 60.109 55.000 27.15 0.00 0.00 2.43
596 1812 2.558554 TTCCGCGGTTCTGCTAGAGC 62.559 60.000 27.15 0.00 42.50 4.09
597 1813 2.951745 CGCGGTTCTGCTAGAGCG 60.952 66.667 0.00 0.00 45.83 5.03
599 1815 2.181777 CGGTTCTGCTAGAGCGCA 59.818 61.111 11.47 0.00 45.83 6.09
600 1816 2.161486 CGGTTCTGCTAGAGCGCAC 61.161 63.158 11.47 2.25 45.83 5.34
601 1817 1.216710 GGTTCTGCTAGAGCGCACT 59.783 57.895 13.06 13.06 45.83 4.40
602 1818 0.390472 GGTTCTGCTAGAGCGCACTT 60.390 55.000 13.83 0.00 45.83 3.16
603 1819 1.135083 GGTTCTGCTAGAGCGCACTTA 60.135 52.381 13.83 0.00 45.83 2.24
604 1820 2.607187 GTTCTGCTAGAGCGCACTTAA 58.393 47.619 13.83 0.00 45.83 1.85
605 1821 2.279582 TCTGCTAGAGCGCACTTAAC 57.720 50.000 13.83 3.63 45.83 2.01
606 1822 1.135083 TCTGCTAGAGCGCACTTAACC 60.135 52.381 13.83 0.00 45.83 2.85
607 1823 0.895530 TGCTAGAGCGCACTTAACCT 59.104 50.000 13.83 0.00 45.83 3.50
608 1824 1.281899 GCTAGAGCGCACTTAACCTG 58.718 55.000 13.83 0.00 0.00 4.00
609 1825 1.927895 CTAGAGCGCACTTAACCTGG 58.072 55.000 13.83 0.00 0.00 4.45
610 1826 1.476891 CTAGAGCGCACTTAACCTGGA 59.523 52.381 13.83 0.00 0.00 3.86
611 1827 0.247736 AGAGCGCACTTAACCTGGAG 59.752 55.000 11.47 0.00 0.00 3.86
618 1834 3.330267 GCACTTAACCTGGAGAAGAGTG 58.670 50.000 15.86 14.04 36.88 3.51
628 1844 1.065564 GGAGAAGAGTGGCAGATGCTT 60.066 52.381 4.59 0.00 41.70 3.91
652 1868 0.544357 TCACCATCCCTCCTGTTCGT 60.544 55.000 0.00 0.00 0.00 3.85
653 1869 0.324943 CACCATCCCTCCTGTTCGTT 59.675 55.000 0.00 0.00 0.00 3.85
654 1870 1.553248 CACCATCCCTCCTGTTCGTTA 59.447 52.381 0.00 0.00 0.00 3.18
655 1871 2.170607 CACCATCCCTCCTGTTCGTTAT 59.829 50.000 0.00 0.00 0.00 1.89
656 1872 2.844348 ACCATCCCTCCTGTTCGTTATT 59.156 45.455 0.00 0.00 0.00 1.40
657 1873 3.265995 ACCATCCCTCCTGTTCGTTATTT 59.734 43.478 0.00 0.00 0.00 1.40
658 1874 4.263771 ACCATCCCTCCTGTTCGTTATTTT 60.264 41.667 0.00 0.00 0.00 1.82
659 1875 4.705023 CCATCCCTCCTGTTCGTTATTTTT 59.295 41.667 0.00 0.00 0.00 1.94
660 1876 5.393027 CCATCCCTCCTGTTCGTTATTTTTG 60.393 44.000 0.00 0.00 0.00 2.44
661 1877 4.076394 TCCCTCCTGTTCGTTATTTTTGG 58.924 43.478 0.00 0.00 0.00 3.28
662 1878 3.192633 CCCTCCTGTTCGTTATTTTTGGG 59.807 47.826 0.00 0.00 0.00 4.12
663 1879 3.824443 CCTCCTGTTCGTTATTTTTGGGT 59.176 43.478 0.00 0.00 0.00 4.51
664 1880 4.320935 CCTCCTGTTCGTTATTTTTGGGTG 60.321 45.833 0.00 0.00 0.00 4.61
665 1881 3.004944 TCCTGTTCGTTATTTTTGGGTGC 59.995 43.478 0.00 0.00 0.00 5.01
666 1882 3.243569 CCTGTTCGTTATTTTTGGGTGCA 60.244 43.478 0.00 0.00 0.00 4.57
667 1883 3.707793 TGTTCGTTATTTTTGGGTGCAC 58.292 40.909 8.80 8.80 0.00 4.57
668 1884 3.130516 TGTTCGTTATTTTTGGGTGCACA 59.869 39.130 20.43 0.00 0.00 4.57
669 1885 4.113354 GTTCGTTATTTTTGGGTGCACAA 58.887 39.130 20.43 3.85 0.00 3.33
670 1886 4.592485 TCGTTATTTTTGGGTGCACAAT 57.408 36.364 20.43 11.61 0.00 2.71
671 1887 4.551388 TCGTTATTTTTGGGTGCACAATC 58.449 39.130 20.43 8.12 0.00 2.67
672 1888 4.279671 TCGTTATTTTTGGGTGCACAATCT 59.720 37.500 20.43 0.00 0.00 2.40
673 1889 4.621034 CGTTATTTTTGGGTGCACAATCTC 59.379 41.667 20.43 0.00 0.00 2.75
674 1890 5.537188 GTTATTTTTGGGTGCACAATCTCA 58.463 37.500 20.43 5.62 0.00 3.27
675 1891 4.895668 ATTTTTGGGTGCACAATCTCAT 57.104 36.364 20.43 0.39 0.00 2.90
676 1892 3.940209 TTTTGGGTGCACAATCTCATC 57.060 42.857 20.43 0.00 0.00 2.92
677 1893 1.838112 TTGGGTGCACAATCTCATCC 58.162 50.000 20.43 8.38 34.11 3.51
678 1894 0.994247 TGGGTGCACAATCTCATCCT 59.006 50.000 20.43 0.00 34.61 3.24
679 1895 1.355381 TGGGTGCACAATCTCATCCTT 59.645 47.619 20.43 0.00 34.61 3.36
680 1896 2.225091 TGGGTGCACAATCTCATCCTTT 60.225 45.455 20.43 0.00 34.61 3.11
681 1897 2.827921 GGGTGCACAATCTCATCCTTTT 59.172 45.455 20.43 0.00 30.89 2.27
682 1898 3.259123 GGGTGCACAATCTCATCCTTTTT 59.741 43.478 20.43 0.00 30.89 1.94
683 1899 4.488879 GGTGCACAATCTCATCCTTTTTC 58.511 43.478 20.43 0.00 0.00 2.29
684 1900 4.488879 GTGCACAATCTCATCCTTTTTCC 58.511 43.478 13.17 0.00 0.00 3.13
685 1901 4.219288 GTGCACAATCTCATCCTTTTTCCT 59.781 41.667 13.17 0.00 0.00 3.36
686 1902 4.219070 TGCACAATCTCATCCTTTTTCCTG 59.781 41.667 0.00 0.00 0.00 3.86
687 1903 4.741342 CACAATCTCATCCTTTTTCCTGC 58.259 43.478 0.00 0.00 0.00 4.85
688 1904 3.766051 ACAATCTCATCCTTTTTCCTGCC 59.234 43.478 0.00 0.00 0.00 4.85
689 1905 3.744940 ATCTCATCCTTTTTCCTGCCA 57.255 42.857 0.00 0.00 0.00 4.92
690 1906 3.744940 TCTCATCCTTTTTCCTGCCAT 57.255 42.857 0.00 0.00 0.00 4.40
691 1907 4.051661 TCTCATCCTTTTTCCTGCCATT 57.948 40.909 0.00 0.00 0.00 3.16
692 1908 4.019174 TCTCATCCTTTTTCCTGCCATTC 58.981 43.478 0.00 0.00 0.00 2.67
693 1909 4.021916 CTCATCCTTTTTCCTGCCATTCT 58.978 43.478 0.00 0.00 0.00 2.40
694 1910 4.419282 TCATCCTTTTTCCTGCCATTCTT 58.581 39.130 0.00 0.00 0.00 2.52
695 1911 4.221262 TCATCCTTTTTCCTGCCATTCTTG 59.779 41.667 0.00 0.00 0.00 3.02
736 1952 5.596836 TTTTCCAAGTGAGCATGTCTTTT 57.403 34.783 0.00 0.00 0.00 2.27
737 1953 4.836125 TTCCAAGTGAGCATGTCTTTTC 57.164 40.909 0.00 0.00 0.00 2.29
738 1954 4.090761 TCCAAGTGAGCATGTCTTTTCT 57.909 40.909 0.00 0.00 0.00 2.52
739 1955 4.464008 TCCAAGTGAGCATGTCTTTTCTT 58.536 39.130 0.00 0.00 0.00 2.52
740 1956 5.620206 TCCAAGTGAGCATGTCTTTTCTTA 58.380 37.500 0.00 0.00 0.00 2.10
741 1957 6.061441 TCCAAGTGAGCATGTCTTTTCTTAA 58.939 36.000 0.00 0.00 0.00 1.85
742 1958 6.716628 TCCAAGTGAGCATGTCTTTTCTTAAT 59.283 34.615 0.00 0.00 0.00 1.40
743 1959 7.231317 TCCAAGTGAGCATGTCTTTTCTTAATT 59.769 33.333 0.00 0.00 0.00 1.40
744 1960 7.327761 CCAAGTGAGCATGTCTTTTCTTAATTG 59.672 37.037 0.00 0.00 0.00 2.32
745 1961 6.917533 AGTGAGCATGTCTTTTCTTAATTGG 58.082 36.000 0.00 0.00 0.00 3.16
746 1962 6.716628 AGTGAGCATGTCTTTTCTTAATTGGA 59.283 34.615 0.00 0.00 0.00 3.53
747 1963 7.395489 AGTGAGCATGTCTTTTCTTAATTGGAT 59.605 33.333 0.00 0.00 0.00 3.41
748 1964 7.487189 GTGAGCATGTCTTTTCTTAATTGGATG 59.513 37.037 0.00 0.00 0.00 3.51
749 1965 6.870769 AGCATGTCTTTTCTTAATTGGATGG 58.129 36.000 0.00 0.00 0.00 3.51
750 1966 6.438425 AGCATGTCTTTTCTTAATTGGATGGT 59.562 34.615 0.00 0.00 0.00 3.55
751 1967 6.532657 GCATGTCTTTTCTTAATTGGATGGTG 59.467 38.462 0.00 0.00 0.00 4.17
752 1968 7.605449 CATGTCTTTTCTTAATTGGATGGTGT 58.395 34.615 0.00 0.00 0.00 4.16
753 1969 6.980593 TGTCTTTTCTTAATTGGATGGTGTG 58.019 36.000 0.00 0.00 0.00 3.82
754 1970 6.015519 TGTCTTTTCTTAATTGGATGGTGTGG 60.016 38.462 0.00 0.00 0.00 4.17
755 1971 4.799564 TTTCTTAATTGGATGGTGTGGC 57.200 40.909 0.00 0.00 0.00 5.01
756 1972 2.733956 TCTTAATTGGATGGTGTGGCC 58.266 47.619 0.00 0.00 37.90 5.36
757 1973 1.405105 CTTAATTGGATGGTGTGGCCG 59.595 52.381 0.00 0.00 41.21 6.13
758 1974 0.395036 TAATTGGATGGTGTGGCCGG 60.395 55.000 0.00 0.00 41.21 6.13
813 2029 0.033601 AAGGGGCAGTTGAACACACA 60.034 50.000 0.00 0.00 0.00 3.72
814 2030 0.751643 AGGGGCAGTTGAACACACAC 60.752 55.000 0.00 0.00 0.00 3.82
815 2031 1.034838 GGGGCAGTTGAACACACACA 61.035 55.000 0.00 0.00 0.00 3.72
821 2037 2.095853 CAGTTGAACACACACACACCTC 59.904 50.000 0.00 0.00 0.00 3.85
850 2070 3.754955 CAACTGAATGCAGCACAGTATG 58.245 45.455 16.80 13.31 46.26 2.39
858 2078 3.743521 TGCAGCACAGTATGAAGAAAGT 58.256 40.909 0.00 0.00 39.69 2.66
931 2151 3.103738 GCACGTGCATTCAGATTGATTC 58.896 45.455 34.52 0.00 41.59 2.52
950 2170 0.817634 CCCACGAGGTTGCTGTTGAA 60.818 55.000 0.00 0.00 0.00 2.69
1006 2233 1.258982 GGAGCGAGTCAATTATGCACG 59.741 52.381 0.00 0.00 0.00 5.34
1181 2439 4.971939 AGTAATCTACTACTCCCTCCGTC 58.028 47.826 0.00 0.00 37.23 4.79
1184 2442 0.549950 CTACTACTCCCTCCGTCCCA 59.450 60.000 0.00 0.00 0.00 4.37
1186 2444 1.229131 ACTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
1189 2447 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
1191 2449 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
1192 2450 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
1194 2452 2.969950 CCCTCCGTCCCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
1195 2453 3.244112 CCCTCCGTCCCATAATGTAAGAC 60.244 52.174 0.00 0.00 0.00 3.01
1201 2459 5.122711 CCGTCCCATAATGTAAGACGTTTTT 59.877 40.000 9.63 0.00 46.62 1.94
1204 2462 7.019418 GTCCCATAATGTAAGACGTTTTTGAC 58.981 38.462 0.00 0.00 0.00 3.18
1206 2464 6.799925 CCCATAATGTAAGACGTTTTTGACAC 59.200 38.462 0.00 0.00 0.00 3.67
1208 2466 8.714179 CCATAATGTAAGACGTTTTTGACACTA 58.286 33.333 0.00 0.00 0.00 2.74
1209 2467 9.741168 CATAATGTAAGACGTTTTTGACACTAG 57.259 33.333 0.00 0.00 0.00 2.57
1210 2468 7.781548 AATGTAAGACGTTTTTGACACTAGT 57.218 32.000 0.00 0.00 0.00 2.57
1211 2469 8.876275 AATGTAAGACGTTTTTGACACTAGTA 57.124 30.769 0.00 0.00 0.00 1.82
1212 2470 9.485206 AATGTAAGACGTTTTTGACACTAGTAT 57.515 29.630 0.00 0.00 0.00 2.12
1214 2472 9.616634 TGTAAGACGTTTTTGACACTAGTATAG 57.383 33.333 0.00 0.00 46.50 1.31
1287 2635 3.413558 GTGCCGTCGTCAATTTAATCAC 58.586 45.455 0.00 0.00 0.00 3.06
1389 2767 0.682852 ACGCAGGTTGGTTGCTACTA 59.317 50.000 0.00 0.00 39.38 1.82
1390 2768 1.278127 ACGCAGGTTGGTTGCTACTAT 59.722 47.619 0.00 0.00 39.38 2.12
1391 2769 1.665679 CGCAGGTTGGTTGCTACTATG 59.334 52.381 0.00 0.00 39.38 2.23
1393 2771 3.677700 CGCAGGTTGGTTGCTACTATGTA 60.678 47.826 0.00 0.00 39.38 2.29
1395 2773 4.827692 CAGGTTGGTTGCTACTATGTACA 58.172 43.478 0.00 0.00 0.00 2.90
1454 3016 6.214191 TGACTGTCAAGACTCTGGATATTC 57.786 41.667 8.27 0.00 0.00 1.75
1458 3020 2.965831 TCAAGACTCTGGATATTCCCCG 59.034 50.000 0.00 0.00 35.03 5.73
1493 3346 2.875296 AGCACCTTATCAGTTTTGCCA 58.125 42.857 0.00 0.00 0.00 4.92
1586 3453 9.766277 GCTGATGCATAACTAAATTTATAGAGC 57.234 33.333 0.00 1.38 39.41 4.09
1656 3528 2.035576 ACACGGTAGACCAAGAAGTGTC 59.964 50.000 0.00 0.00 36.77 3.67
1802 3705 6.990349 ACTGAAAAATCTTGACCGTTTCTCTA 59.010 34.615 0.00 0.00 0.00 2.43
1916 3890 0.622665 CCATCTCCTGGTCAAGGCTT 59.377 55.000 0.00 0.00 46.92 4.35
1931 3905 5.582665 GTCAAGGCTTATTCCAAGTACAGAG 59.417 44.000 0.00 0.00 0.00 3.35
2034 4044 1.611673 CGGAGCTGTCAATCCCAAAGT 60.612 52.381 0.00 0.00 31.43 2.66
2218 4262 7.935755 TGCAAAATAGAAATTTGAACCATCCAA 59.064 29.630 0.00 0.00 39.56 3.53
2364 4541 9.784531 ATATGATTTCACTACCAAATAGACAGG 57.215 33.333 0.00 0.00 34.65 4.00
2503 4685 1.072331 TGCTTCAGGGAGTTTGGAGAC 59.928 52.381 0.00 0.00 0.00 3.36
2533 4715 4.142622 GCATCTTGGACGACAATGAATGAA 60.143 41.667 0.00 0.00 38.65 2.57
2563 4745 6.942576 ACATTGGTATAATGGCCTCTTATGAC 59.057 38.462 16.77 11.53 32.14 3.06
2741 4928 8.321353 TGAGTGGATGATCTTGTACTTACAATT 58.679 33.333 2.33 0.00 44.34 2.32
2961 6048 4.891992 TGGCTAGTAAGATATTCTGCCC 57.108 45.455 0.00 0.00 38.45 5.36
2963 6050 3.841255 GGCTAGTAAGATATTCTGCCCCT 59.159 47.826 0.00 0.00 33.66 4.79
3016 6114 2.743664 TCCGTGCATTGTTGAGATCTTG 59.256 45.455 0.00 0.00 0.00 3.02
3023 6126 3.490439 TTGTTGAGATCTTGAGTGCCA 57.510 42.857 0.00 0.00 0.00 4.92
3192 6296 5.759506 ATTCTCTCTACGTGAATGATCGT 57.240 39.130 0.00 0.00 42.82 3.73
3303 6409 4.253685 TGTTGCTTAACTGCTCATAGTCC 58.746 43.478 0.00 0.00 0.00 3.85
3356 6467 5.529581 TTTTTGGTGCCTCTTTTTCTAGG 57.470 39.130 0.00 0.00 35.86 3.02
3357 6468 4.447138 TTTGGTGCCTCTTTTTCTAGGA 57.553 40.909 0.00 0.00 34.58 2.94
3417 6528 3.426159 CGTTTCAGAAACTGTGTGCAACT 60.426 43.478 21.24 0.00 39.23 3.16
3574 6941 1.446272 GCTGTGAGTGGCGTCCTAC 60.446 63.158 0.00 0.00 0.00 3.18
3575 6942 1.964448 CTGTGAGTGGCGTCCTACA 59.036 57.895 0.00 0.00 0.00 2.74
3619 7184 0.608035 CCGGCTAGCAACCTTTCCAA 60.608 55.000 18.24 0.00 0.00 3.53
3780 7375 2.071688 AAGAGCTGAGCGTACTGTTG 57.928 50.000 0.00 0.00 0.00 3.33
3781 7376 0.244994 AGAGCTGAGCGTACTGTTGG 59.755 55.000 0.00 0.00 0.00 3.77
3782 7377 0.038159 GAGCTGAGCGTACTGTTGGT 60.038 55.000 0.00 0.00 0.00 3.67
3783 7378 0.393077 AGCTGAGCGTACTGTTGGTT 59.607 50.000 0.00 0.00 0.00 3.67
3805 7401 8.092687 TGGTTCTAACTAGTGATTCCTTTGTAC 58.907 37.037 0.00 0.00 0.00 2.90
3806 7402 7.275123 GGTTCTAACTAGTGATTCCTTTGTACG 59.725 40.741 0.00 0.00 0.00 3.67
3807 7403 7.692460 TCTAACTAGTGATTCCTTTGTACGA 57.308 36.000 0.00 0.00 0.00 3.43
3808 7404 8.114331 TCTAACTAGTGATTCCTTTGTACGAA 57.886 34.615 0.00 0.00 0.00 3.85
3893 7584 5.647658 GTCATTCACCATACATCTTGTTGGA 59.352 40.000 12.61 0.00 34.70 3.53
3899 7590 9.913310 TTCACCATACATCTTGTTGGATAAATA 57.087 29.630 12.61 0.00 34.70 1.40
3900 7591 9.913310 TCACCATACATCTTGTTGGATAAATAA 57.087 29.630 12.61 0.00 34.70 1.40
3901 7592 9.950680 CACCATACATCTTGTTGGATAAATAAC 57.049 33.333 12.61 0.00 34.70 1.89
3902 7593 9.693739 ACCATACATCTTGTTGGATAAATAACA 57.306 29.630 12.61 0.00 34.70 2.41
3922 7613 4.781934 ACAACTTATATTCACTGAGGGCC 58.218 43.478 0.00 0.00 0.00 5.80
3923 7614 4.227300 ACAACTTATATTCACTGAGGGCCA 59.773 41.667 6.18 0.00 0.00 5.36
3924 7615 5.192927 CAACTTATATTCACTGAGGGCCAA 58.807 41.667 6.18 0.00 0.00 4.52
3925 7616 5.450818 ACTTATATTCACTGAGGGCCAAA 57.549 39.130 6.18 0.00 0.00 3.28
3927 7618 5.888161 ACTTATATTCACTGAGGGCCAAAAG 59.112 40.000 6.18 1.97 0.00 2.27
3928 7619 1.260544 ATTCACTGAGGGCCAAAAGC 58.739 50.000 6.18 0.00 42.60 3.51
3945 8640 8.915871 GCCAAAAGCCATTACATATATATGTG 57.084 34.615 30.35 18.41 40.49 3.21
3946 8641 8.522830 GCCAAAAGCCATTACATATATATGTGT 58.477 33.333 30.35 17.81 40.49 3.72
3947 8642 9.844790 CCAAAAGCCATTACATATATATGTGTG 57.155 33.333 30.35 26.26 45.77 3.82
3951 8646 9.791801 AAGCCATTACATATATATGTGTGACAA 57.208 29.630 30.35 19.73 45.77 3.18
3952 8647 9.791801 AGCCATTACATATATATGTGTGACAAA 57.208 29.630 30.35 19.15 45.77 2.83
3960 8655 6.915544 ATATATGTGTGACAAAGTGCAGAG 57.084 37.500 0.00 0.00 0.00 3.35
3963 8658 2.677836 TGTGTGACAAAGTGCAGAGAAC 59.322 45.455 0.00 0.00 0.00 3.01
3965 8660 1.604278 GTGACAAAGTGCAGAGAACCC 59.396 52.381 0.00 0.00 0.00 4.11
3966 8661 1.239347 GACAAAGTGCAGAGAACCCC 58.761 55.000 0.00 0.00 0.00 4.95
3968 8663 1.215423 ACAAAGTGCAGAGAACCCCTT 59.785 47.619 0.00 0.00 0.00 3.95
3970 8665 3.074538 ACAAAGTGCAGAGAACCCCTTAT 59.925 43.478 0.00 0.00 0.00 1.73
3971 8666 4.288626 ACAAAGTGCAGAGAACCCCTTATA 59.711 41.667 0.00 0.00 0.00 0.98
3972 8667 4.489306 AAGTGCAGAGAACCCCTTATAC 57.511 45.455 0.00 0.00 0.00 1.47
3974 8669 3.844211 AGTGCAGAGAACCCCTTATACAA 59.156 43.478 0.00 0.00 0.00 2.41
3975 8670 4.475016 AGTGCAGAGAACCCCTTATACAAT 59.525 41.667 0.00 0.00 0.00 2.71
3977 8672 4.137543 GCAGAGAACCCCTTATACAATGG 58.862 47.826 0.00 0.00 0.00 3.16
3978 8673 4.718961 CAGAGAACCCCTTATACAATGGG 58.281 47.826 0.00 0.00 43.43 4.00
3987 8682 5.925509 CCCTTATACAATGGGGATATACCG 58.074 45.833 0.00 0.00 41.25 4.02
3988 8683 5.664006 CCCTTATACAATGGGGATATACCGA 59.336 44.000 0.00 0.00 41.25 4.69
3991 8686 8.104566 CCTTATACAATGGGGATATACCGAAAA 58.895 37.037 0.00 0.00 40.11 2.29
3992 8687 9.681062 CTTATACAATGGGGATATACCGAAAAT 57.319 33.333 0.00 0.00 40.11 1.82
3993 8688 7.938140 ATACAATGGGGATATACCGAAAATG 57.062 36.000 0.00 0.00 40.11 2.32
3996 8691 4.360951 TGGGGATATACCGAAAATGGAC 57.639 45.455 0.00 0.00 40.11 4.02
3997 8692 3.977999 TGGGGATATACCGAAAATGGACT 59.022 43.478 0.00 0.00 40.11 3.85
3998 8693 5.156649 TGGGGATATACCGAAAATGGACTA 58.843 41.667 0.00 0.00 40.11 2.59
3999 8694 5.788533 TGGGGATATACCGAAAATGGACTAT 59.211 40.000 0.00 0.00 40.11 2.12
4000 8695 6.961131 TGGGGATATACCGAAAATGGACTATA 59.039 38.462 0.00 0.00 40.11 1.31
4001 8696 7.093201 TGGGGATATACCGAAAATGGACTATAC 60.093 40.741 0.00 0.00 40.11 1.47
4002 8697 7.093201 GGGGATATACCGAAAATGGACTATACA 60.093 40.741 0.00 0.00 40.11 2.29
4003 8698 7.763071 GGGATATACCGAAAATGGACTATACAC 59.237 40.741 0.00 0.00 40.11 2.90
4004 8699 8.308931 GGATATACCGAAAATGGACTATACACA 58.691 37.037 0.00 0.00 0.00 3.72
4005 8700 9.871238 GATATACCGAAAATGGACTATACACAT 57.129 33.333 0.00 0.00 0.00 3.21
4006 8701 9.871238 ATATACCGAAAATGGACTATACACATC 57.129 33.333 0.00 0.00 0.00 3.06
4007 8702 6.235231 ACCGAAAATGGACTATACACATCT 57.765 37.500 0.00 0.00 0.00 2.90
4008 8703 7.356089 ACCGAAAATGGACTATACACATCTA 57.644 36.000 0.00 0.00 0.00 1.98
4010 8705 7.709613 ACCGAAAATGGACTATACACATCTAAC 59.290 37.037 0.00 0.00 0.00 2.34
4011 8706 7.709182 CCGAAAATGGACTATACACATCTAACA 59.291 37.037 0.00 0.00 0.00 2.41
4012 8707 8.540492 CGAAAATGGACTATACACATCTAACAC 58.460 37.037 0.00 0.00 0.00 3.32
4013 8708 8.732746 AAAATGGACTATACACATCTAACACC 57.267 34.615 0.00 0.00 0.00 4.16
4014 8709 5.864418 TGGACTATACACATCTAACACCC 57.136 43.478 0.00 0.00 0.00 4.61
4015 8710 4.652421 TGGACTATACACATCTAACACCCC 59.348 45.833 0.00 0.00 0.00 4.95
4016 8711 4.040095 GGACTATACACATCTAACACCCCC 59.960 50.000 0.00 0.00 0.00 5.40
4017 8712 4.892198 ACTATACACATCTAACACCCCCT 58.108 43.478 0.00 0.00 0.00 4.79
4018 8713 4.900054 ACTATACACATCTAACACCCCCTC 59.100 45.833 0.00 0.00 0.00 4.30
4020 8715 1.203440 ACACATCTAACACCCCCTCCT 60.203 52.381 0.00 0.00 0.00 3.69
4021 8716 1.486726 CACATCTAACACCCCCTCCTC 59.513 57.143 0.00 0.00 0.00 3.71
4022 8717 1.080498 ACATCTAACACCCCCTCCTCA 59.920 52.381 0.00 0.00 0.00 3.86
4023 8718 2.196595 CATCTAACACCCCCTCCTCAA 58.803 52.381 0.00 0.00 0.00 3.02
4024 8719 2.426431 TCTAACACCCCCTCCTCAAA 57.574 50.000 0.00 0.00 0.00 2.69
4025 8720 1.982958 TCTAACACCCCCTCCTCAAAC 59.017 52.381 0.00 0.00 0.00 2.93
4026 8721 1.985895 CTAACACCCCCTCCTCAAACT 59.014 52.381 0.00 0.00 0.00 2.66
4027 8722 0.771755 AACACCCCCTCCTCAAACTC 59.228 55.000 0.00 0.00 0.00 3.01
4028 8723 0.401395 ACACCCCCTCCTCAAACTCA 60.401 55.000 0.00 0.00 0.00 3.41
4029 8724 0.995024 CACCCCCTCCTCAAACTCAT 59.005 55.000 0.00 0.00 0.00 2.90
4030 8725 0.995024 ACCCCCTCCTCAAACTCATG 59.005 55.000 0.00 0.00 0.00 3.07
4031 8726 0.257039 CCCCCTCCTCAAACTCATGG 59.743 60.000 0.00 0.00 0.00 3.66
4032 8727 0.995024 CCCCTCCTCAAACTCATGGT 59.005 55.000 0.00 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
122 170 8.501580 TCTGTATATACTCGGTCAAATCTAACG 58.498 37.037 13.89 0.00 0.00 3.18
238 1215 8.836413 CCAAGTTTCTAGAATAATCCGCAAATA 58.164 33.333 5.89 0.00 0.00 1.40
243 1220 5.815740 TGACCAAGTTTCTAGAATAATCCGC 59.184 40.000 5.89 0.00 0.00 5.54
244 1221 7.265673 TCTGACCAAGTTTCTAGAATAATCCG 58.734 38.462 5.89 0.00 0.00 4.18
245 1222 9.620259 ATTCTGACCAAGTTTCTAGAATAATCC 57.380 33.333 5.89 0.00 34.24 3.01
258 1235 9.325198 GGTCAATTTTTAAATTCTGACCAAGTT 57.675 29.630 24.43 0.00 46.19 2.66
263 1240 9.541143 TTCAAGGTCAATTTTTAAATTCTGACC 57.459 29.630 23.12 23.12 46.73 4.02
271 1248 9.686683 TGGGATTTTTCAAGGTCAATTTTTAAA 57.313 25.926 0.00 0.00 0.00 1.52
272 1249 9.686683 TTGGGATTTTTCAAGGTCAATTTTTAA 57.313 25.926 0.00 0.00 0.00 1.52
273 1250 9.686683 TTTGGGATTTTTCAAGGTCAATTTTTA 57.313 25.926 0.00 0.00 0.00 1.52
274 1251 8.586879 TTTGGGATTTTTCAAGGTCAATTTTT 57.413 26.923 0.00 0.00 0.00 1.94
275 1252 8.465999 GTTTTGGGATTTTTCAAGGTCAATTTT 58.534 29.630 0.00 0.00 0.00 1.82
278 1255 6.899089 AGTTTTGGGATTTTTCAAGGTCAAT 58.101 32.000 0.00 0.00 0.00 2.57
279 1256 6.306643 AGTTTTGGGATTTTTCAAGGTCAA 57.693 33.333 0.00 0.00 0.00 3.18
281 1258 6.345298 TGAAGTTTTGGGATTTTTCAAGGTC 58.655 36.000 0.00 0.00 0.00 3.85
282 1259 6.306643 TGAAGTTTTGGGATTTTTCAAGGT 57.693 33.333 0.00 0.00 0.00 3.50
283 1260 7.806409 ATTGAAGTTTTGGGATTTTTCAAGG 57.194 32.000 4.18 0.00 37.78 3.61
374 1574 3.961408 ACTACTTACTACTGGATGGCTGG 59.039 47.826 0.00 0.00 0.00 4.85
401 1601 4.974645 TCTTTCTTTCTAGCCTGGAACA 57.025 40.909 0.00 0.00 0.00 3.18
402 1602 5.998363 TCTTTCTTTCTTTCTAGCCTGGAAC 59.002 40.000 0.00 0.00 0.00 3.62
403 1603 6.187727 TCTTTCTTTCTTTCTAGCCTGGAA 57.812 37.500 0.00 0.00 0.00 3.53
404 1604 5.825593 TCTTTCTTTCTTTCTAGCCTGGA 57.174 39.130 0.00 0.00 0.00 3.86
406 1606 5.106908 CCGTTCTTTCTTTCTTTCTAGCCTG 60.107 44.000 0.00 0.00 0.00 4.85
407 1607 4.998033 CCGTTCTTTCTTTCTTTCTAGCCT 59.002 41.667 0.00 0.00 0.00 4.58
408 1608 4.378563 GCCGTTCTTTCTTTCTTTCTAGCC 60.379 45.833 0.00 0.00 0.00 3.93
410 1610 5.615764 GCAGCCGTTCTTTCTTTCTTTCTAG 60.616 44.000 0.00 0.00 0.00 2.43
411 1611 4.213482 GCAGCCGTTCTTTCTTTCTTTCTA 59.787 41.667 0.00 0.00 0.00 2.10
430 1645 0.386478 CGGCTCAGTTTTCTTGCAGC 60.386 55.000 0.00 0.00 0.00 5.25
437 1652 2.563427 GCAGCCGGCTCAGTTTTC 59.437 61.111 30.29 5.88 40.25 2.29
507 1723 4.215613 AGAAATCCGGTTTTGCTAACAGTC 59.784 41.667 15.13 0.00 0.00 3.51
558 1774 3.186613 GGAAACAATCAGTGGAAGACGAC 59.813 47.826 0.00 0.00 0.00 4.34
571 1787 0.454452 GCAGAACCGCGGAAACAATC 60.454 55.000 35.90 18.33 0.00 2.67
573 1789 0.249953 TAGCAGAACCGCGGAAACAA 60.250 50.000 35.90 7.76 36.85 2.83
574 1790 0.669318 CTAGCAGAACCGCGGAAACA 60.669 55.000 35.90 8.72 36.85 2.83
575 1791 0.389426 TCTAGCAGAACCGCGGAAAC 60.389 55.000 35.90 21.37 36.85 2.78
577 1793 1.511305 CTCTAGCAGAACCGCGGAA 59.489 57.895 35.90 6.62 36.85 4.30
578 1794 3.064987 GCTCTAGCAGAACCGCGGA 62.065 63.158 35.90 6.13 41.59 5.54
579 1795 2.583593 GCTCTAGCAGAACCGCGG 60.584 66.667 26.86 26.86 41.59 6.46
580 1796 2.951745 CGCTCTAGCAGAACCGCG 60.952 66.667 0.00 0.00 42.21 6.46
581 1797 3.258290 GCGCTCTAGCAGAACCGC 61.258 66.667 0.00 11.79 42.21 5.68
582 1798 2.181777 TGCGCTCTAGCAGAACCG 59.818 61.111 9.73 0.00 42.92 4.44
588 1804 0.895530 AGGTTAAGTGCGCTCTAGCA 59.104 50.000 13.07 0.00 45.96 3.49
589 1805 1.281899 CAGGTTAAGTGCGCTCTAGC 58.718 55.000 13.07 7.83 37.78 3.42
590 1806 1.476891 TCCAGGTTAAGTGCGCTCTAG 59.523 52.381 13.07 0.00 0.00 2.43
591 1807 1.476891 CTCCAGGTTAAGTGCGCTCTA 59.523 52.381 13.07 0.00 0.00 2.43
592 1808 0.247736 CTCCAGGTTAAGTGCGCTCT 59.752 55.000 9.73 7.80 0.00 4.09
593 1809 0.246635 TCTCCAGGTTAAGTGCGCTC 59.753 55.000 9.73 4.74 0.00 5.03
594 1810 0.685097 TTCTCCAGGTTAAGTGCGCT 59.315 50.000 9.73 0.00 0.00 5.92
595 1811 1.079503 CTTCTCCAGGTTAAGTGCGC 58.920 55.000 0.00 0.00 0.00 6.09
596 1812 2.028930 ACTCTTCTCCAGGTTAAGTGCG 60.029 50.000 4.18 0.00 0.00 5.34
597 1813 3.330267 CACTCTTCTCCAGGTTAAGTGC 58.670 50.000 4.18 0.00 0.00 4.40
598 1814 3.866449 GCCACTCTTCTCCAGGTTAAGTG 60.866 52.174 0.00 0.00 34.00 3.16
599 1815 2.303311 GCCACTCTTCTCCAGGTTAAGT 59.697 50.000 4.18 0.00 0.00 2.24
600 1816 2.303022 TGCCACTCTTCTCCAGGTTAAG 59.697 50.000 0.00 0.00 0.00 1.85
601 1817 2.303022 CTGCCACTCTTCTCCAGGTTAA 59.697 50.000 0.00 0.00 0.00 2.01
602 1818 1.902508 CTGCCACTCTTCTCCAGGTTA 59.097 52.381 0.00 0.00 0.00 2.85
603 1819 0.689623 CTGCCACTCTTCTCCAGGTT 59.310 55.000 0.00 0.00 0.00 3.50
604 1820 0.178921 TCTGCCACTCTTCTCCAGGT 60.179 55.000 0.00 0.00 0.00 4.00
605 1821 1.134461 CATCTGCCACTCTTCTCCAGG 60.134 57.143 0.00 0.00 0.00 4.45
606 1822 1.743091 GCATCTGCCACTCTTCTCCAG 60.743 57.143 0.00 0.00 34.31 3.86
607 1823 0.251354 GCATCTGCCACTCTTCTCCA 59.749 55.000 0.00 0.00 34.31 3.86
608 1824 0.540923 AGCATCTGCCACTCTTCTCC 59.459 55.000 0.00 0.00 43.38 3.71
609 1825 2.399916 AAGCATCTGCCACTCTTCTC 57.600 50.000 0.00 0.00 43.38 2.87
610 1826 2.417924 CGTAAGCATCTGCCACTCTTCT 60.418 50.000 0.00 0.00 43.38 2.85
611 1827 1.929836 CGTAAGCATCTGCCACTCTTC 59.070 52.381 0.00 0.00 43.38 2.87
628 1844 1.043116 CAGGAGGGATGGTGAGCGTA 61.043 60.000 0.00 0.00 0.00 4.42
652 1868 5.798125 TGAGATTGTGCACCCAAAAATAA 57.202 34.783 15.69 0.00 0.00 1.40
653 1869 5.105392 GGATGAGATTGTGCACCCAAAAATA 60.105 40.000 15.69 0.00 0.00 1.40
654 1870 4.322953 GGATGAGATTGTGCACCCAAAAAT 60.323 41.667 15.69 6.73 0.00 1.82
655 1871 3.006752 GGATGAGATTGTGCACCCAAAAA 59.993 43.478 15.69 1.06 0.00 1.94
656 1872 2.562298 GGATGAGATTGTGCACCCAAAA 59.438 45.455 15.69 1.50 0.00 2.44
657 1873 2.170166 GGATGAGATTGTGCACCCAAA 58.830 47.619 15.69 1.92 0.00 3.28
658 1874 1.355381 AGGATGAGATTGTGCACCCAA 59.645 47.619 15.69 2.85 0.00 4.12
659 1875 0.994247 AGGATGAGATTGTGCACCCA 59.006 50.000 15.69 0.47 0.00 4.51
660 1876 2.134789 AAGGATGAGATTGTGCACCC 57.865 50.000 15.69 5.33 0.00 4.61
661 1877 4.488879 GAAAAAGGATGAGATTGTGCACC 58.511 43.478 15.69 0.00 0.00 5.01
662 1878 4.219288 AGGAAAAAGGATGAGATTGTGCAC 59.781 41.667 10.75 10.75 0.00 4.57
663 1879 4.219070 CAGGAAAAAGGATGAGATTGTGCA 59.781 41.667 0.00 0.00 0.00 4.57
664 1880 4.741342 CAGGAAAAAGGATGAGATTGTGC 58.259 43.478 0.00 0.00 0.00 4.57
665 1881 4.381292 GGCAGGAAAAAGGATGAGATTGTG 60.381 45.833 0.00 0.00 0.00 3.33
666 1882 3.766051 GGCAGGAAAAAGGATGAGATTGT 59.234 43.478 0.00 0.00 0.00 2.71
667 1883 3.765511 TGGCAGGAAAAAGGATGAGATTG 59.234 43.478 0.00 0.00 0.00 2.67
668 1884 4.051661 TGGCAGGAAAAAGGATGAGATT 57.948 40.909 0.00 0.00 0.00 2.40
669 1885 3.744940 TGGCAGGAAAAAGGATGAGAT 57.255 42.857 0.00 0.00 0.00 2.75
670 1886 3.744940 ATGGCAGGAAAAAGGATGAGA 57.255 42.857 0.00 0.00 0.00 3.27
671 1887 4.021916 AGAATGGCAGGAAAAAGGATGAG 58.978 43.478 0.00 0.00 0.00 2.90
672 1888 4.051661 AGAATGGCAGGAAAAAGGATGA 57.948 40.909 0.00 0.00 0.00 2.92
673 1889 4.020839 ACAAGAATGGCAGGAAAAAGGATG 60.021 41.667 0.00 0.00 0.00 3.51
674 1890 4.162651 ACAAGAATGGCAGGAAAAAGGAT 58.837 39.130 0.00 0.00 0.00 3.24
675 1891 3.575805 ACAAGAATGGCAGGAAAAAGGA 58.424 40.909 0.00 0.00 0.00 3.36
676 1892 4.341366 AACAAGAATGGCAGGAAAAAGG 57.659 40.909 0.00 0.00 0.00 3.11
677 1893 7.571798 GCAAATAACAAGAATGGCAGGAAAAAG 60.572 37.037 0.00 0.00 0.00 2.27
678 1894 6.204495 GCAAATAACAAGAATGGCAGGAAAAA 59.796 34.615 0.00 0.00 0.00 1.94
679 1895 5.700373 GCAAATAACAAGAATGGCAGGAAAA 59.300 36.000 0.00 0.00 0.00 2.29
680 1896 5.221601 TGCAAATAACAAGAATGGCAGGAAA 60.222 36.000 0.00 0.00 0.00 3.13
681 1897 4.282957 TGCAAATAACAAGAATGGCAGGAA 59.717 37.500 0.00 0.00 0.00 3.36
682 1898 3.831333 TGCAAATAACAAGAATGGCAGGA 59.169 39.130 0.00 0.00 0.00 3.86
683 1899 4.178540 CTGCAAATAACAAGAATGGCAGG 58.821 43.478 0.00 0.00 42.68 4.85
684 1900 4.178540 CCTGCAAATAACAAGAATGGCAG 58.821 43.478 0.00 0.00 45.16 4.85
685 1901 3.055963 CCCTGCAAATAACAAGAATGGCA 60.056 43.478 0.00 0.00 0.00 4.92
686 1902 3.195396 TCCCTGCAAATAACAAGAATGGC 59.805 43.478 0.00 0.00 0.00 4.40
687 1903 5.404466 TTCCCTGCAAATAACAAGAATGG 57.596 39.130 0.00 0.00 0.00 3.16
688 1904 7.098477 TCAATTCCCTGCAAATAACAAGAATG 58.902 34.615 0.00 0.00 0.00 2.67
689 1905 7.243604 TCAATTCCCTGCAAATAACAAGAAT 57.756 32.000 0.00 0.00 0.00 2.40
690 1906 6.662865 TCAATTCCCTGCAAATAACAAGAA 57.337 33.333 0.00 0.00 0.00 2.52
691 1907 6.855763 ATCAATTCCCTGCAAATAACAAGA 57.144 33.333 0.00 0.00 0.00 3.02
692 1908 7.910441 AAATCAATTCCCTGCAAATAACAAG 57.090 32.000 0.00 0.00 0.00 3.16
693 1909 7.390162 GGAAAATCAATTCCCTGCAAATAACAA 59.610 33.333 0.00 0.00 42.57 2.83
694 1910 6.878389 GGAAAATCAATTCCCTGCAAATAACA 59.122 34.615 0.00 0.00 42.57 2.41
695 1911 6.878389 TGGAAAATCAATTCCCTGCAAATAAC 59.122 34.615 3.78 0.00 46.89 1.89
736 1952 2.733956 GGCCACACCATCCAATTAAGA 58.266 47.619 0.00 0.00 38.86 2.10
737 1953 1.405105 CGGCCACACCATCCAATTAAG 59.595 52.381 2.24 0.00 39.03 1.85
738 1954 1.468985 CGGCCACACCATCCAATTAA 58.531 50.000 2.24 0.00 39.03 1.40
739 1955 0.395036 CCGGCCACACCATCCAATTA 60.395 55.000 2.24 0.00 39.03 1.40
740 1956 1.682005 CCGGCCACACCATCCAATT 60.682 57.895 2.24 0.00 39.03 2.32
741 1957 2.044053 CCGGCCACACCATCCAAT 60.044 61.111 2.24 0.00 39.03 3.16
742 1958 3.561120 GACCGGCCACACCATCCAA 62.561 63.158 0.00 0.00 39.03 3.53
743 1959 4.028490 GACCGGCCACACCATCCA 62.028 66.667 0.00 0.00 39.03 3.41
744 1960 4.796495 GGACCGGCCACACCATCC 62.796 72.222 0.00 0.00 39.03 3.51
745 1961 4.028490 TGGACCGGCCACACCATC 62.028 66.667 12.86 0.00 43.33 3.51
753 1969 1.141665 GCAATTTGATGGACCGGCC 59.858 57.895 0.00 4.32 37.10 6.13
754 1970 1.141665 GGCAATTTGATGGACCGGC 59.858 57.895 0.00 0.00 0.00 6.13
755 1971 1.029408 TCGGCAATTTGATGGACCGG 61.029 55.000 0.00 0.00 40.95 5.28
756 1972 1.024271 ATCGGCAATTTGATGGACCG 58.976 50.000 0.00 3.44 41.92 4.79
757 1973 2.497107 CATCGGCAATTTGATGGACC 57.503 50.000 0.00 0.00 38.62 4.46
781 1997 4.722700 CCCTTCAGCACCCCACGG 62.723 72.222 0.00 0.00 0.00 4.94
801 2017 2.290008 TGAGGTGTGTGTGTGTTCAACT 60.290 45.455 0.00 0.00 0.00 3.16
813 2029 2.807107 TTGCCGCTCTGAGGTGTGT 61.807 57.895 6.83 0.00 0.00 3.72
814 2030 2.031012 TTGCCGCTCTGAGGTGTG 59.969 61.111 6.83 0.00 0.00 3.82
815 2031 2.031163 GTTGCCGCTCTGAGGTGT 59.969 61.111 6.83 0.00 0.00 4.16
821 2037 1.136147 GCATTCAGTTGCCGCTCTG 59.864 57.895 8.97 8.97 36.60 3.35
850 2070 1.070289 ACGACACCTGGGACTTTCTTC 59.930 52.381 0.00 0.00 0.00 2.87
858 2078 1.646912 TCCAATAACGACACCTGGGA 58.353 50.000 0.00 0.00 0.00 4.37
931 2151 0.817634 TTCAACAGCAACCTCGTGGG 60.818 55.000 8.63 2.00 41.89 4.61
976 2200 4.856607 CTCGCTCCCTTCGGACGC 62.857 72.222 0.00 0.00 34.58 5.19
978 2202 1.874345 TTGACTCGCTCCCTTCGGAC 61.874 60.000 0.00 0.00 33.32 4.79
1006 2233 1.068055 CATCTGTGCTTGTGCCTTTCC 60.068 52.381 0.00 0.00 38.71 3.13
1181 2439 6.799925 GTGTCAAAAACGTCTTACATTATGGG 59.200 38.462 0.00 0.00 0.00 4.00
1184 2442 9.485206 ACTAGTGTCAAAAACGTCTTACATTAT 57.515 29.630 0.00 0.00 0.00 1.28
1186 2444 7.781548 ACTAGTGTCAAAAACGTCTTACATT 57.218 32.000 0.00 0.00 0.00 2.71
1189 2447 9.617975 ACTATACTAGTGTCAAAAACGTCTTAC 57.382 33.333 5.39 0.00 37.69 2.34
1220 2478 5.592688 CCTCCGTCCCATAATGTATGTTTTT 59.407 40.000 0.00 0.00 34.36 1.94
1222 2480 4.445735 CCCTCCGTCCCATAATGTATGTTT 60.446 45.833 0.00 0.00 34.36 2.83
1224 2482 2.637872 CCCTCCGTCCCATAATGTATGT 59.362 50.000 0.00 0.00 34.36 2.29
1225 2483 2.903784 TCCCTCCGTCCCATAATGTATG 59.096 50.000 0.00 0.00 35.94 2.39
1226 2484 3.173965 CTCCCTCCGTCCCATAATGTAT 58.826 50.000 0.00 0.00 0.00 2.29
1227 2485 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
1228 2486 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
1229 2487 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
1230 2488 2.179424 ACTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
1231 2489 1.572415 ACTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
1232 2490 1.229131 ACTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
1234 2492 1.144503 GATACTACTCCCTCCGTCCCA 59.855 57.143 0.00 0.00 0.00 4.37
1237 2579 4.563374 GGACTAGATACTACTCCCTCCGTC 60.563 54.167 0.00 0.00 0.00 4.79
1241 2583 5.180271 CGATGGACTAGATACTACTCCCTC 58.820 50.000 0.00 0.00 0.00 4.30
1287 2635 8.356533 ACTACATGCAAAAGAAACATCAAAAG 57.643 30.769 0.00 0.00 0.00 2.27
1389 2767 7.970061 GCAGATTTCACAAACATACATGTACAT 59.030 33.333 7.96 1.41 40.80 2.29
1390 2768 7.304735 GCAGATTTCACAAACATACATGTACA 58.695 34.615 7.96 0.00 40.80 2.90
1391 2769 6.747280 GGCAGATTTCACAAACATACATGTAC 59.253 38.462 7.96 0.00 40.80 2.90
1393 2771 5.477984 AGGCAGATTTCACAAACATACATGT 59.522 36.000 2.69 2.69 44.20 3.21
1395 2773 5.948162 AGAGGCAGATTTCACAAACATACAT 59.052 36.000 0.00 0.00 0.00 2.29
1454 3016 3.754323 TGCTTTTTCTTACACATACGGGG 59.246 43.478 0.00 0.00 0.00 5.73
1458 3020 8.726988 TGATAAGGTGCTTTTTCTTACACATAC 58.273 33.333 0.00 0.00 34.69 2.39
1493 3346 4.769688 TCAAATATCCACTCAACGCATCT 58.230 39.130 0.00 0.00 0.00 2.90
1586 3453 5.926214 TGCCAATTTGTCATGTTGAATTG 57.074 34.783 16.37 16.37 38.54 2.32
1591 3458 3.120130 GCCAATGCCAATTTGTCATGTTG 60.120 43.478 0.00 0.00 0.00 3.33
1756 3649 3.808174 GTCCCTCGTCTTATTAACCATGC 59.192 47.826 0.00 0.00 0.00 4.06
1763 3656 7.848128 AGATTTTTCAGTCCCTCGTCTTATTA 58.152 34.615 0.00 0.00 0.00 0.98
1916 3890 8.417106 GTCATGAGAATCTCTGTACTTGGAATA 58.583 37.037 11.92 0.00 34.92 1.75
1931 3905 5.702670 TGTTCTGTTGAAGGTCATGAGAATC 59.297 40.000 0.00 0.00 31.13 2.52
2034 4044 8.414003 CAATGAGGTTATTGTAGTACTCTAGCA 58.586 37.037 0.00 0.00 34.21 3.49
2218 4262 5.476983 TCCTGGGATAAATACCACAGAGAT 58.523 41.667 0.00 0.00 35.32 2.75
2364 4541 3.733443 AAAATTGCCACTCCAGTTGAC 57.267 42.857 0.00 0.00 0.00 3.18
2503 4685 0.321564 TCGTCCAAGATGCAACCCTG 60.322 55.000 0.00 0.00 0.00 4.45
2563 4745 2.704065 ACCAGGAGGGAATATACCAACG 59.296 50.000 0.00 0.00 41.15 4.10
2610 4792 2.033448 CCCCAGCGGTGCACTTTA 59.967 61.111 17.98 0.00 0.00 1.85
2741 4928 7.495901 TGAAGAAAATAAGCATCACCAAAACA 58.504 30.769 0.00 0.00 0.00 2.83
2823 5906 2.088423 CCTTTTTGCATGGCCTACGTA 58.912 47.619 3.32 0.00 0.00 3.57
2945 6028 6.789959 ACAGAATAGGGGCAGAATATCTTACT 59.210 38.462 0.00 0.00 0.00 2.24
2949 6032 5.158141 TGACAGAATAGGGGCAGAATATCT 58.842 41.667 0.00 0.00 0.00 1.98
2956 6043 2.173356 TCCATTGACAGAATAGGGGCAG 59.827 50.000 0.00 0.00 0.00 4.85
2961 6048 7.415653 GGTTAAAGCTTCCATTGACAGAATAGG 60.416 40.741 0.00 0.00 0.00 2.57
2963 6050 7.175104 AGGTTAAAGCTTCCATTGACAGAATA 58.825 34.615 0.00 0.00 0.00 1.75
3102 6206 3.984633 CAGACTGAACTTTCGAGAAGGAC 59.015 47.826 0.00 6.02 0.00 3.85
3192 6296 1.201647 CGAACGCCTGTTTCTAGAGGA 59.798 52.381 0.00 0.00 38.78 3.71
3303 6409 1.167781 TGCACATCCACACAGCACAG 61.168 55.000 0.00 0.00 0.00 3.66
3352 6463 7.928706 ACCGTTAGATGAAGAATCAATTCCTAG 59.071 37.037 0.00 0.00 39.49 3.02
3353 6464 7.792032 ACCGTTAGATGAAGAATCAATTCCTA 58.208 34.615 0.00 0.00 39.49 2.94
3355 6466 6.927294 ACCGTTAGATGAAGAATCAATTCC 57.073 37.500 0.00 0.00 39.49 3.01
3548 6914 0.321919 GCCACTCACAGCATCTTGGA 60.322 55.000 0.00 0.00 0.00 3.53
3619 7184 7.288810 ACACAATTTACATGACTGGTGAATT 57.711 32.000 0.00 0.00 35.59 2.17
3721 7286 3.696051 AGAATGCGGTGAACAAATAGCAT 59.304 39.130 0.00 0.00 45.75 3.79
3780 7375 7.275123 CGTACAAAGGAATCACTAGTTAGAACC 59.725 40.741 0.00 0.00 0.00 3.62
3781 7376 8.025445 TCGTACAAAGGAATCACTAGTTAGAAC 58.975 37.037 0.00 0.00 0.00 3.01
3782 7377 8.114331 TCGTACAAAGGAATCACTAGTTAGAA 57.886 34.615 0.00 0.00 0.00 2.10
3783 7378 7.692460 TCGTACAAAGGAATCACTAGTTAGA 57.308 36.000 0.00 0.00 0.00 2.10
3805 7401 3.126831 GTCCTAGAACCTGCATCATTCG 58.873 50.000 0.00 0.00 0.00 3.34
3806 7402 4.125703 CTGTCCTAGAACCTGCATCATTC 58.874 47.826 0.00 0.00 0.00 2.67
3807 7403 3.776969 TCTGTCCTAGAACCTGCATCATT 59.223 43.478 0.00 0.00 30.84 2.57
3808 7404 3.133721 GTCTGTCCTAGAACCTGCATCAT 59.866 47.826 0.00 0.00 37.12 2.45
3899 7590 5.193679 GGCCCTCAGTGAATATAAGTTGTT 58.806 41.667 0.00 0.00 0.00 2.83
3900 7591 4.227300 TGGCCCTCAGTGAATATAAGTTGT 59.773 41.667 0.00 0.00 0.00 3.32
3901 7592 4.780815 TGGCCCTCAGTGAATATAAGTTG 58.219 43.478 0.00 0.00 0.00 3.16
3902 7593 5.450818 TTGGCCCTCAGTGAATATAAGTT 57.549 39.130 0.00 0.00 0.00 2.66
3904 7595 5.221126 GCTTTTGGCCCTCAGTGAATATAAG 60.221 44.000 0.00 0.00 34.27 1.73
3905 7596 4.644685 GCTTTTGGCCCTCAGTGAATATAA 59.355 41.667 0.00 0.00 34.27 0.98
3906 7597 4.207165 GCTTTTGGCCCTCAGTGAATATA 58.793 43.478 0.00 0.00 34.27 0.86
3907 7598 3.026694 GCTTTTGGCCCTCAGTGAATAT 58.973 45.455 0.00 0.00 34.27 1.28
3908 7599 2.446435 GCTTTTGGCCCTCAGTGAATA 58.554 47.619 0.00 0.00 34.27 1.75
3909 7600 1.260544 GCTTTTGGCCCTCAGTGAAT 58.739 50.000 0.00 0.00 34.27 2.57
3911 7602 4.500265 GCTTTTGGCCCTCAGTGA 57.500 55.556 0.00 0.00 34.27 3.41
3920 7611 8.522830 ACACATATATATGTAATGGCTTTTGGC 58.477 33.333 24.50 0.00 44.57 4.52
3924 7615 9.791801 TGTCACACATATATATGTAATGGCTTT 57.208 29.630 27.56 7.69 44.57 3.51
3925 7616 9.791801 TTGTCACACATATATATGTAATGGCTT 57.208 29.630 27.56 8.22 44.57 4.35
3943 8638 2.032178 GGTTCTCTGCACTTTGTCACAC 59.968 50.000 0.00 0.00 0.00 3.82
3944 8639 2.288666 GGTTCTCTGCACTTTGTCACA 58.711 47.619 0.00 0.00 0.00 3.58
3945 8640 1.604278 GGGTTCTCTGCACTTTGTCAC 59.396 52.381 0.00 0.00 0.00 3.67
3946 8641 1.476833 GGGGTTCTCTGCACTTTGTCA 60.477 52.381 0.00 0.00 0.00 3.58
3947 8642 1.202818 AGGGGTTCTCTGCACTTTGTC 60.203 52.381 0.00 0.00 0.00 3.18
3949 8644 1.986882 AAGGGGTTCTCTGCACTTTG 58.013 50.000 0.00 0.00 0.00 2.77
3951 8646 3.844211 TGTATAAGGGGTTCTCTGCACTT 59.156 43.478 0.00 0.00 0.00 3.16
3952 8647 3.450904 TGTATAAGGGGTTCTCTGCACT 58.549 45.455 0.00 0.00 0.00 4.40
3953 8648 3.906720 TGTATAAGGGGTTCTCTGCAC 57.093 47.619 0.00 0.00 0.00 4.57
3955 8650 4.137543 CCATTGTATAAGGGGTTCTCTGC 58.862 47.826 0.00 0.00 34.16 4.26
3965 8660 6.801718 TCGGTATATCCCCATTGTATAAGG 57.198 41.667 0.00 0.00 0.00 2.69
3966 8661 9.681062 ATTTTCGGTATATCCCCATTGTATAAG 57.319 33.333 0.00 0.00 0.00 1.73
3968 8663 8.050325 CCATTTTCGGTATATCCCCATTGTATA 58.950 37.037 0.00 0.00 0.00 1.47
3970 8665 6.044520 TCCATTTTCGGTATATCCCCATTGTA 59.955 38.462 0.00 0.00 0.00 2.41
3971 8666 5.076873 CCATTTTCGGTATATCCCCATTGT 58.923 41.667 0.00 0.00 0.00 2.71
3972 8667 5.183140 GTCCATTTTCGGTATATCCCCATTG 59.817 44.000 0.00 0.00 0.00 2.82
3974 8669 4.601857 AGTCCATTTTCGGTATATCCCCAT 59.398 41.667 0.00 0.00 0.00 4.00
3975 8670 3.977999 AGTCCATTTTCGGTATATCCCCA 59.022 43.478 0.00 0.00 0.00 4.96
3977 8672 7.763071 GTGTATAGTCCATTTTCGGTATATCCC 59.237 40.741 0.00 0.00 0.00 3.85
3978 8673 8.308931 TGTGTATAGTCCATTTTCGGTATATCC 58.691 37.037 0.00 0.00 0.00 2.59
3980 8675 9.871238 GATGTGTATAGTCCATTTTCGGTATAT 57.129 33.333 0.00 0.00 0.00 0.86
3981 8676 9.085645 AGATGTGTATAGTCCATTTTCGGTATA 57.914 33.333 0.00 0.00 0.00 1.47
3982 8677 7.963532 AGATGTGTATAGTCCATTTTCGGTAT 58.036 34.615 0.00 0.00 0.00 2.73
3983 8678 7.356089 AGATGTGTATAGTCCATTTTCGGTA 57.644 36.000 0.00 0.00 0.00 4.02
3984 8679 6.235231 AGATGTGTATAGTCCATTTTCGGT 57.765 37.500 0.00 0.00 0.00 4.69
3985 8680 7.709182 TGTTAGATGTGTATAGTCCATTTTCGG 59.291 37.037 0.00 0.00 0.00 4.30
3987 8682 8.827677 GGTGTTAGATGTGTATAGTCCATTTTC 58.172 37.037 0.00 0.00 0.00 2.29
3988 8683 7.773690 GGGTGTTAGATGTGTATAGTCCATTTT 59.226 37.037 0.00 0.00 0.00 1.82
3991 8686 5.307196 GGGGTGTTAGATGTGTATAGTCCAT 59.693 44.000 0.00 0.00 0.00 3.41
3992 8687 4.652421 GGGGTGTTAGATGTGTATAGTCCA 59.348 45.833 0.00 0.00 0.00 4.02
3993 8688 4.040095 GGGGGTGTTAGATGTGTATAGTCC 59.960 50.000 0.00 0.00 0.00 3.85
3996 8691 4.283722 GGAGGGGGTGTTAGATGTGTATAG 59.716 50.000 0.00 0.00 0.00 1.31
3997 8692 4.078219 AGGAGGGGGTGTTAGATGTGTATA 60.078 45.833 0.00 0.00 0.00 1.47
3998 8693 3.046374 GGAGGGGGTGTTAGATGTGTAT 58.954 50.000 0.00 0.00 0.00 2.29
3999 8694 2.045326 AGGAGGGGGTGTTAGATGTGTA 59.955 50.000 0.00 0.00 0.00 2.90
4000 8695 1.203440 AGGAGGGGGTGTTAGATGTGT 60.203 52.381 0.00 0.00 0.00 3.72
4001 8696 1.486726 GAGGAGGGGGTGTTAGATGTG 59.513 57.143 0.00 0.00 0.00 3.21
4002 8697 1.080498 TGAGGAGGGGGTGTTAGATGT 59.920 52.381 0.00 0.00 0.00 3.06
4003 8698 1.879575 TGAGGAGGGGGTGTTAGATG 58.120 55.000 0.00 0.00 0.00 2.90
4004 8699 2.576648 GTTTGAGGAGGGGGTGTTAGAT 59.423 50.000 0.00 0.00 0.00 1.98
4005 8700 1.982958 GTTTGAGGAGGGGGTGTTAGA 59.017 52.381 0.00 0.00 0.00 2.10
4006 8701 1.985895 AGTTTGAGGAGGGGGTGTTAG 59.014 52.381 0.00 0.00 0.00 2.34
4007 8702 1.982958 GAGTTTGAGGAGGGGGTGTTA 59.017 52.381 0.00 0.00 0.00 2.41
4008 8703 0.771755 GAGTTTGAGGAGGGGGTGTT 59.228 55.000 0.00 0.00 0.00 3.32
4010 8705 0.995024 ATGAGTTTGAGGAGGGGGTG 59.005 55.000 0.00 0.00 0.00 4.61
4011 8706 0.995024 CATGAGTTTGAGGAGGGGGT 59.005 55.000 0.00 0.00 0.00 4.95
4012 8707 0.257039 CCATGAGTTTGAGGAGGGGG 59.743 60.000 0.00 0.00 0.00 5.40
4013 8708 0.995024 ACCATGAGTTTGAGGAGGGG 59.005 55.000 0.00 0.00 0.00 4.79
4014 8709 2.119801 CACCATGAGTTTGAGGAGGG 57.880 55.000 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.