Multiple sequence alignment - TraesCS3D01G330600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G330600 chr3D 100.000 4354 0 0 992 5345 443271853 443267500 0.000000e+00 8041.0
1 TraesCS3D01G330600 chr3D 100.000 755 0 0 1 755 443272844 443272090 0.000000e+00 1395.0
2 TraesCS3D01G330600 chr3A 92.732 2683 116 36 2158 4800 584297238 584294595 0.000000e+00 3801.0
3 TraesCS3D01G330600 chr3A 95.630 1167 50 1 992 2158 584298433 584297268 0.000000e+00 1871.0
4 TraesCS3D01G330600 chr3A 89.448 1033 59 18 3796 4803 584292808 584291801 0.000000e+00 1258.0
5 TraesCS3D01G330600 chr3A 88.438 320 14 7 4802 5111 584291536 584291230 1.090000e-96 364.0
6 TraesCS3D01G330600 chr3A 89.583 240 15 6 526 755 584298689 584298450 4.050000e-76 296.0
7 TraesCS3D01G330600 chr3A 89.362 188 10 2 358 544 584298879 584298701 1.500000e-55 228.0
8 TraesCS3D01G330600 chr3A 90.972 144 4 4 4802 4938 584294557 584294416 9.140000e-43 185.0
9 TraesCS3D01G330600 chr3A 86.061 165 22 1 61 225 584299076 584298913 5.500000e-40 176.0
10 TraesCS3D01G330600 chr3B 90.765 2144 117 27 2158 4252 581081048 581078937 0.000000e+00 2787.0
11 TraesCS3D01G330600 chr3B 92.608 1177 40 14 992 2159 581082215 581081077 0.000000e+00 1648.0
12 TraesCS3D01G330600 chr3B 88.608 474 22 13 4280 4753 581078937 581078496 1.010000e-151 547.0
13 TraesCS3D01G330600 chr3B 87.433 374 30 6 307 666 581082763 581082393 1.070000e-111 414.0
14 TraesCS3D01G330600 chr3B 83.333 306 20 12 4802 5102 581078426 581078147 2.470000e-63 254.0
15 TraesCS3D01G330600 chr3B 84.362 243 14 14 1 227 581082995 581082761 3.240000e-52 217.0
16 TraesCS3D01G330600 chrUn 96.930 228 6 1 5118 5345 271361188 271361414 1.090000e-101 381.0
17 TraesCS3D01G330600 chrUn 96.491 228 7 1 5118 5345 396543964 396543738 5.050000e-100 375.0
18 TraesCS3D01G330600 chrUn 96.053 228 8 1 5118 5345 221366519 221366293 2.350000e-98 370.0
19 TraesCS3D01G330600 chrUn 96.053 228 8 1 5118 5345 415802905 415803131 2.350000e-98 370.0
20 TraesCS3D01G330600 chrUn 95.614 228 9 1 5118 5345 225540331 225540105 1.090000e-96 364.0
21 TraesCS3D01G330600 chrUn 87.156 109 11 3 4033 4139 22143159 22143266 2.610000e-23 121.0
22 TraesCS3D01G330600 chr7A 96.053 228 8 1 5118 5345 5781418 5781192 2.350000e-98 370.0
23 TraesCS3D01G330600 chr4A 95.964 223 9 0 5122 5344 16023231 16023453 3.930000e-96 363.0
24 TraesCS3D01G330600 chr4A 95.181 83 4 0 225 307 697941991 697942073 1.210000e-26 132.0
25 TraesCS3D01G330600 chr4A 89.000 100 9 2 4030 4129 608187936 608188033 7.270000e-24 122.0
26 TraesCS3D01G330600 chr4A 100.000 28 0 0 664 691 666106408 666106435 1.000000e-02 52.8
27 TraesCS3D01G330600 chr6A 95.495 222 8 2 5124 5345 583399108 583398889 2.370000e-93 353.0
28 TraesCS3D01G330600 chr4D 95.089 224 11 0 5122 5345 84282323 84282100 2.370000e-93 353.0
29 TraesCS3D01G330600 chr4D 96.471 85 3 0 223 307 16403449 16403533 2.010000e-29 141.0
30 TraesCS3D01G330600 chr4D 88.235 102 12 0 4017 4118 498898062 498897961 7.270000e-24 122.0
31 TraesCS3D01G330600 chr6B 96.512 86 3 0 223 308 26619171 26619086 5.580000e-30 143.0
32 TraesCS3D01G330600 chr6B 90.526 95 8 1 4029 4122 252820947 252820853 2.020000e-24 124.0
33 TraesCS3D01G330600 chr5A 97.590 83 2 0 225 307 510022441 510022359 5.580000e-30 143.0
34 TraesCS3D01G330600 chr2A 95.506 89 4 0 219 307 68249099 68249011 5.580000e-30 143.0
35 TraesCS3D01G330600 chr1D 97.590 83 2 0 225 307 69615613 69615695 5.580000e-30 143.0
36 TraesCS3D01G330600 chr7B 96.471 85 3 0 223 307 744524530 744524446 2.010000e-29 141.0
37 TraesCS3D01G330600 chr7B 91.304 92 8 0 216 307 48864102 48864193 5.620000e-25 126.0
38 TraesCS3D01G330600 chr5B 92.000 100 6 2 226 324 482285946 482285848 7.220000e-29 139.0
39 TraesCS3D01G330600 chr4B 90.426 94 9 0 4031 4124 621712366 621712459 2.020000e-24 124.0
40 TraesCS3D01G330600 chr4B 82.906 117 15 4 4003 4117 584622018 584621905 3.410000e-17 100.0
41 TraesCS3D01G330600 chr1A 89.000 100 10 1 4033 4132 133417547 133417449 7.270000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G330600 chr3D 443267500 443272844 5344 True 4718.000000 8041 100.00000 1 5345 2 chr3D.!!$R1 5344
1 TraesCS3D01G330600 chr3A 584291230 584299076 7846 True 1022.375000 3801 90.27825 61 5111 8 chr3A.!!$R1 5050
2 TraesCS3D01G330600 chr3B 581078147 581082995 4848 True 977.833333 2787 87.85150 1 5102 6 chr3B.!!$R1 5101

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
238 255 0.179142 GCGAAGTACTCCCTCCGTTC 60.179 60.000 0.0 0.0 0.0 3.95 F
240 257 1.132643 CGAAGTACTCCCTCCGTTCTG 59.867 57.143 0.0 0.0 0.0 3.02 F
1328 1459 1.152839 CTCCTCGTCCTCCTCCTCC 60.153 68.421 0.0 0.0 0.0 4.30 F
1995 2132 1.399791 GCTTTGTACCATCAGCAGCTC 59.600 52.381 0.0 0.0 0.0 4.09 F
2682 2885 2.171840 GTACCAGTTGAGAGAGCAGGA 58.828 52.381 0.0 0.0 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2198 2395 0.549169 TGGGTAGAGGTTCCCCTTGG 60.549 60.000 0.00 0.00 42.86 3.61 R
2202 2399 3.323775 TCAATATGGGTAGAGGTTCCCC 58.676 50.000 0.00 0.00 42.80 4.81 R
3241 3462 2.260844 TTTGCCAGGTCAAGAGACAG 57.739 50.000 0.00 0.00 46.80 3.51 R
3356 3577 1.727467 GCGACAAGCCAACAAGTGT 59.273 52.632 0.00 0.00 40.81 3.55 R
4380 7424 1.196354 GATGCTGTTCATATGCTCGGC 59.804 52.381 17.74 17.74 35.05 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.635373 TCTCGTACTCTCTCTCTCTCTCC 59.365 52.174 0.00 0.00 0.00 3.71
24 25 3.367321 TCGTACTCTCTCTCTCTCTCCA 58.633 50.000 0.00 0.00 0.00 3.86
36 37 6.012858 TCTCTCTCTCTCCAAGTAGATATCCC 60.013 46.154 0.00 0.00 0.00 3.85
37 38 4.912586 TCTCTCTCCAAGTAGATATCCCG 58.087 47.826 0.00 0.00 0.00 5.14
50 58 5.786264 AGATATCCCGAACATTACTCGTT 57.214 39.130 0.00 0.00 34.46 3.85
51 59 5.770417 AGATATCCCGAACATTACTCGTTC 58.230 41.667 0.00 0.00 39.50 3.95
53 61 6.713903 AGATATCCCGAACATTACTCGTTCTA 59.286 38.462 0.00 0.00 40.50 2.10
56 64 6.309712 TCCCGAACATTACTCGTTCTATAG 57.690 41.667 0.00 0.00 40.50 1.31
57 65 6.057533 TCCCGAACATTACTCGTTCTATAGA 58.942 40.000 0.00 0.00 40.50 1.98
58 66 6.543465 TCCCGAACATTACTCGTTCTATAGAA 59.457 38.462 11.24 11.24 40.50 2.10
78 86 1.227380 CATGGCTAGAGGTGCGGTC 60.227 63.158 0.00 0.00 0.00 4.79
79 87 1.381872 ATGGCTAGAGGTGCGGTCT 60.382 57.895 0.00 0.00 0.00 3.85
86 94 4.640690 AGGTGCGGTCTGGGGAGT 62.641 66.667 0.00 0.00 0.00 3.85
124 141 0.389817 TGCGGATGTTTCGACTGAGG 60.390 55.000 0.00 0.00 0.00 3.86
166 183 1.072505 GTGTCGGACACCACCCATT 59.927 57.895 26.86 0.00 43.05 3.16
168 185 0.322322 TGTCGGACACCACCCATTAC 59.678 55.000 6.76 0.00 0.00 1.89
226 243 0.606604 GTTGGTGGAGGAGCGAAGTA 59.393 55.000 0.00 0.00 0.00 2.24
227 244 0.606604 TTGGTGGAGGAGCGAAGTAC 59.393 55.000 0.00 0.00 0.00 2.73
228 245 0.251653 TGGTGGAGGAGCGAAGTACT 60.252 55.000 0.00 0.00 0.00 2.73
229 246 0.456628 GGTGGAGGAGCGAAGTACTC 59.543 60.000 0.00 0.00 0.00 2.59
234 251 2.117257 GGAGCGAAGTACTCCCTCC 58.883 63.158 16.15 16.15 46.81 4.30
235 252 1.726533 GGAGCGAAGTACTCCCTCCG 61.727 65.000 16.15 8.27 46.81 4.63
236 253 1.001145 AGCGAAGTACTCCCTCCGT 60.001 57.895 0.00 0.00 0.00 4.69
237 254 0.611340 AGCGAAGTACTCCCTCCGTT 60.611 55.000 0.00 0.00 0.00 4.44
238 255 0.179142 GCGAAGTACTCCCTCCGTTC 60.179 60.000 0.00 0.00 0.00 3.95
239 256 1.461559 CGAAGTACTCCCTCCGTTCT 58.538 55.000 0.00 0.00 0.00 3.01
240 257 1.132643 CGAAGTACTCCCTCCGTTCTG 59.867 57.143 0.00 0.00 0.00 3.02
241 258 2.444421 GAAGTACTCCCTCCGTTCTGA 58.556 52.381 0.00 0.00 0.00 3.27
242 259 2.830651 AGTACTCCCTCCGTTCTGAT 57.169 50.000 0.00 0.00 0.00 2.90
243 260 3.103080 AGTACTCCCTCCGTTCTGATT 57.897 47.619 0.00 0.00 0.00 2.57
244 261 3.442076 AGTACTCCCTCCGTTCTGATTT 58.558 45.455 0.00 0.00 0.00 2.17
245 262 4.607239 AGTACTCCCTCCGTTCTGATTTA 58.393 43.478 0.00 0.00 0.00 1.40
246 263 3.889520 ACTCCCTCCGTTCTGATTTAC 57.110 47.619 0.00 0.00 0.00 2.01
247 264 3.442076 ACTCCCTCCGTTCTGATTTACT 58.558 45.455 0.00 0.00 0.00 2.24
248 265 3.447944 ACTCCCTCCGTTCTGATTTACTC 59.552 47.826 0.00 0.00 0.00 2.59
249 266 2.426024 TCCCTCCGTTCTGATTTACTCG 59.574 50.000 0.00 0.00 0.00 4.18
250 267 2.165845 CCCTCCGTTCTGATTTACTCGT 59.834 50.000 0.00 0.00 0.00 4.18
251 268 3.436496 CCTCCGTTCTGATTTACTCGTC 58.564 50.000 0.00 0.00 0.00 4.20
252 269 3.099362 CTCCGTTCTGATTTACTCGTCG 58.901 50.000 0.00 0.00 0.00 5.12
253 270 2.485426 TCCGTTCTGATTTACTCGTCGT 59.515 45.455 0.00 0.00 0.00 4.34
254 271 2.844804 CCGTTCTGATTTACTCGTCGTC 59.155 50.000 0.00 0.00 0.00 4.20
255 272 2.521146 CGTTCTGATTTACTCGTCGTCG 59.479 50.000 0.00 0.00 38.55 5.12
256 273 3.486584 GTTCTGATTTACTCGTCGTCGT 58.513 45.455 1.33 0.00 38.33 4.34
257 274 3.818961 TCTGATTTACTCGTCGTCGTT 57.181 42.857 1.33 0.00 38.33 3.85
258 275 4.151258 TCTGATTTACTCGTCGTCGTTT 57.849 40.909 1.33 0.00 38.33 3.60
259 276 4.539870 TCTGATTTACTCGTCGTCGTTTT 58.460 39.130 1.33 0.00 38.33 2.43
260 277 5.688823 TCTGATTTACTCGTCGTCGTTTTA 58.311 37.500 1.33 0.00 38.33 1.52
261 278 5.791974 TCTGATTTACTCGTCGTCGTTTTAG 59.208 40.000 1.33 0.00 38.33 1.85
262 279 5.451908 TGATTTACTCGTCGTCGTTTTAGT 58.548 37.500 1.33 0.91 38.33 2.24
263 280 5.914635 TGATTTACTCGTCGTCGTTTTAGTT 59.085 36.000 1.33 0.00 38.33 2.24
264 281 5.789774 TTTACTCGTCGTCGTTTTAGTTC 57.210 39.130 1.33 0.00 38.33 3.01
265 282 3.338818 ACTCGTCGTCGTTTTAGTTCA 57.661 42.857 1.33 0.00 38.33 3.18
266 283 3.694734 ACTCGTCGTCGTTTTAGTTCAA 58.305 40.909 1.33 0.00 38.33 2.69
267 284 4.104776 ACTCGTCGTCGTTTTAGTTCAAA 58.895 39.130 1.33 0.00 38.33 2.69
268 285 4.741676 ACTCGTCGTCGTTTTAGTTCAAAT 59.258 37.500 1.33 0.00 38.33 2.32
269 286 5.232838 ACTCGTCGTCGTTTTAGTTCAAATT 59.767 36.000 1.33 0.00 38.33 1.82
270 287 6.035070 TCGTCGTCGTTTTAGTTCAAATTT 57.965 33.333 1.33 0.00 38.33 1.82
271 288 5.897518 TCGTCGTCGTTTTAGTTCAAATTTG 59.102 36.000 12.15 12.15 38.33 2.32
272 289 5.897518 CGTCGTCGTTTTAGTTCAAATTTGA 59.102 36.000 16.91 16.91 34.92 2.69
273 290 6.408611 CGTCGTCGTTTTAGTTCAAATTTGAA 59.591 34.615 26.01 26.01 44.31 2.69
287 304 8.844441 TTCAAATTTGAACTAAAACCACTACG 57.156 30.769 26.01 0.00 41.88 3.51
288 305 8.211116 TCAAATTTGAACTAAAACCACTACGA 57.789 30.769 18.45 0.00 33.55 3.43
289 306 8.339714 TCAAATTTGAACTAAAACCACTACGAG 58.660 33.333 18.45 0.00 33.55 4.18
290 307 7.797038 AATTTGAACTAAAACCACTACGAGT 57.203 32.000 0.00 0.00 0.00 4.18
291 308 8.891671 AATTTGAACTAAAACCACTACGAGTA 57.108 30.769 0.00 0.00 0.00 2.59
292 309 8.891671 ATTTGAACTAAAACCACTACGAGTAA 57.108 30.769 0.00 0.00 0.00 2.24
293 310 8.715191 TTTGAACTAAAACCACTACGAGTAAA 57.285 30.769 0.00 0.00 0.00 2.01
294 311 8.891671 TTGAACTAAAACCACTACGAGTAAAT 57.108 30.769 0.00 0.00 0.00 1.40
295 312 8.524870 TGAACTAAAACCACTACGAGTAAATC 57.475 34.615 0.00 0.00 0.00 2.17
336 353 4.734398 TGTTTTTCTTGCCATGTCAGTT 57.266 36.364 0.00 0.00 0.00 3.16
342 359 9.423061 GTTTTTCTTGCCATGTCAGTTTTATAT 57.577 29.630 0.00 0.00 0.00 0.86
344 361 8.984891 TTTCTTGCCATGTCAGTTTTATATTG 57.015 30.769 0.00 0.00 0.00 1.90
347 364 6.832520 TGCCATGTCAGTTTTATATTGTGT 57.167 33.333 0.00 0.00 0.00 3.72
480 497 6.523201 GTGGCTTTACATAATCAACACTTTCG 59.477 38.462 0.00 0.00 0.00 3.46
505 523 7.425595 CGTCTTGTATTTCCTTCGCTTTAAATC 59.574 37.037 0.00 0.00 0.00 2.17
702 816 9.847224 AAAGAGGTTTGACTTAGAACAGAATTA 57.153 29.630 0.00 0.00 0.00 1.40
748 879 4.785561 GCCGAACAAACAACAACATTTTTG 59.214 37.500 0.00 0.00 35.49 2.44
1121 1252 2.607892 GCAACTGCTTCCGCTCGTT 61.608 57.895 0.00 0.00 38.21 3.85
1145 1276 3.839432 GAGCCCGAGGAGAACCCG 61.839 72.222 0.00 0.00 40.87 5.28
1328 1459 1.152839 CTCCTCGTCCTCCTCCTCC 60.153 68.421 0.00 0.00 0.00 4.30
1674 1805 3.557054 CCTCATGGTTCGTTCCTCTTTCA 60.557 47.826 0.00 0.00 0.00 2.69
1701 1832 2.868583 CCTGCTTCAGATGGTGTTATCG 59.131 50.000 0.00 0.00 32.44 2.92
1713 1844 8.969267 CAGATGGTGTTATCGTTTATAGAGTTC 58.031 37.037 0.00 0.00 32.33 3.01
1772 1909 1.748493 TCTAAATGGCAATGAACCGGC 59.252 47.619 0.00 0.00 0.00 6.13
1995 2132 1.399791 GCTTTGTACCATCAGCAGCTC 59.600 52.381 0.00 0.00 0.00 4.09
2073 2210 4.220602 TCTCACTTAGTGTGCAGCTGAATA 59.779 41.667 20.43 0.96 45.81 1.75
2162 2359 5.123344 GGCTTTATCACCAAATAACGTCTGT 59.877 40.000 0.00 0.00 0.00 3.41
2198 2395 6.691508 ACAGTCATTTTCCTTGCCTTTTATC 58.308 36.000 0.00 0.00 0.00 1.75
2202 2399 6.591448 GTCATTTTCCTTGCCTTTTATCCAAG 59.409 38.462 0.00 0.00 36.58 3.61
2252 2449 4.281688 ACTTGCTGGTCATTTGTATGCTTT 59.718 37.500 0.00 0.00 0.00 3.51
2306 2503 8.728596 TTAATCAAATTTGGACCCCTTTTAGA 57.271 30.769 17.90 0.00 0.00 2.10
2529 2728 3.701040 ACACAGAAACTGTTCATGCCTTT 59.299 39.130 1.46 0.00 42.59 3.11
2594 2794 3.595709 TTTTTCTTCTGTTACGCCACG 57.404 42.857 0.00 0.00 0.00 4.94
2617 2820 9.488124 CACGTACTAAGAAATAGACTTACTGAC 57.512 37.037 0.00 0.00 35.47 3.51
2682 2885 2.171840 GTACCAGTTGAGAGAGCAGGA 58.828 52.381 0.00 0.00 0.00 3.86
2700 2903 4.152647 CAGGAGGTATGATGGCACTAGTA 58.847 47.826 0.00 0.00 0.00 1.82
3014 3223 4.370364 TTGTCTTTTCAGCTGGTTTGTC 57.630 40.909 15.13 2.09 0.00 3.18
3151 3360 4.564199 GCATAGTGATGATGAGGTATGCCA 60.564 45.833 1.54 0.00 37.74 4.92
3241 3462 6.498304 CCATACAAATACTGTGCCTTGATTC 58.502 40.000 0.00 0.00 39.20 2.52
3366 3587 5.221880 CACATGTTTCCATACACTTGTTGG 58.778 41.667 0.00 0.00 30.92 3.77
3432 3656 3.645053 ATCACATACTGATCTCCCCCT 57.355 47.619 0.00 0.00 34.07 4.79
3596 3820 1.708341 AAGGTGTCCTGCAATTGCTT 58.292 45.000 29.37 11.31 42.66 3.91
3604 3828 4.141981 TGTCCTGCAATTGCTTCTTTCAAA 60.142 37.500 29.37 6.56 42.66 2.69
3693 3924 1.008815 AGGGATGTCAGTCCAGATGGA 59.991 52.381 0.00 0.00 43.08 3.41
3776 4007 2.935481 CTCCCCTGCCTCACCCAA 60.935 66.667 0.00 0.00 0.00 4.12
3778 4009 2.036256 CCCCTGCCTCACCCAAAG 59.964 66.667 0.00 0.00 0.00 2.77
3779 4010 2.845345 CCCCTGCCTCACCCAAAGT 61.845 63.158 0.00 0.00 0.00 2.66
3782 4013 1.413118 CCTGCCTCACCCAAAGTTTT 58.587 50.000 0.00 0.00 0.00 2.43
3817 4049 9.968743 GTTGAAAGAACTTATAGTTGTATTCCG 57.031 33.333 0.00 0.00 38.80 4.30
3818 4050 9.715121 TTGAAAGAACTTATAGTTGTATTCCGT 57.285 29.630 0.00 0.00 38.80 4.69
3819 4051 9.715121 TGAAAGAACTTATAGTTGTATTCCGTT 57.285 29.630 0.00 0.00 38.80 4.44
3856 6884 3.111853 TCCGAGCATGCATTAGTAAGG 57.888 47.619 21.98 10.45 0.00 2.69
3894 6926 2.168313 ACTGTGTTTTCCAGGCCAAAAG 59.832 45.455 5.01 0.00 34.16 2.27
3961 6993 5.527214 CACATTGACACAGTTTTGGTAGAGA 59.473 40.000 0.00 0.00 0.00 3.10
3993 7025 4.216902 TCAGCTGATTGAACTTTGATGTGG 59.783 41.667 13.74 0.00 0.00 4.17
4142 7186 9.228636 ACAAATTACAAGACATAACGTTTTCAC 57.771 29.630 5.91 0.00 0.00 3.18
4175 7219 2.514205 AATGACTTTTGGTGTGCTGC 57.486 45.000 0.00 0.00 0.00 5.25
4225 7269 2.099427 TGGTTTTTACCGAGCCACAAAC 59.901 45.455 0.00 0.00 0.00 2.93
4263 7307 4.278975 TGTAATGGGGGCAACATTTTTC 57.721 40.909 10.47 4.48 39.18 2.29
4333 7377 0.321653 AAGCTACTGCAGAAACCGGG 60.322 55.000 23.35 0.00 42.74 5.73
4365 7409 5.922739 TGGCATCGTATCAAATGTATCAC 57.077 39.130 0.00 0.00 0.00 3.06
4386 7430 3.258622 ACTGTATCCTATTTAGGCCGAGC 59.741 47.826 0.00 0.00 43.31 5.03
4410 7454 6.860023 GCATATGAACAGCATCCAAATACTTC 59.140 38.462 6.97 0.00 38.44 3.01
4483 7536 2.892640 CGTCGCTCCCCAATCTCA 59.107 61.111 0.00 0.00 0.00 3.27
4492 7545 1.750018 CCCAATCTCATGTGCCGCA 60.750 57.895 0.00 0.00 0.00 5.69
4535 7588 6.531594 GTGCTTGGCCTTCATATTTCTAAAAC 59.468 38.462 3.32 0.00 0.00 2.43
4569 7622 2.494059 CATTTTCCCTGACGACACTGT 58.506 47.619 0.00 0.00 0.00 3.55
4570 7623 1.948104 TTTTCCCTGACGACACTGTG 58.052 50.000 6.19 6.19 0.00 3.66
4606 7659 2.538861 CGTCTGTGAGCTATGAGCATTG 59.461 50.000 0.64 0.00 45.56 2.82
4607 7660 3.736126 CGTCTGTGAGCTATGAGCATTGA 60.736 47.826 0.64 0.00 45.56 2.57
4609 7662 4.815308 GTCTGTGAGCTATGAGCATTGATT 59.185 41.667 0.64 0.00 45.56 2.57
4676 7729 6.130569 ACAACCACTATTTTTCACCCAACTA 58.869 36.000 0.00 0.00 0.00 2.24
4677 7730 6.264518 ACAACCACTATTTTTCACCCAACTAG 59.735 38.462 0.00 0.00 0.00 2.57
4678 7731 5.321927 ACCACTATTTTTCACCCAACTAGG 58.678 41.667 0.00 0.00 37.03 3.02
4770 7823 3.022406 AGCAATCCAATCCAGAGAAAGC 58.978 45.455 0.00 0.00 0.00 3.51
4860 8190 8.698210 AGATGTACCATACGTCCATACTAAAAA 58.302 33.333 0.00 0.00 43.98 1.94
4948 8281 7.822822 AGTACTTGTAGTAGTATTTTGCTTGGG 59.177 37.037 0.00 0.00 32.84 4.12
4962 8295 2.661718 GCTTGGGAGCTCTACTCTACT 58.338 52.381 14.64 0.00 45.65 2.57
4963 8296 2.621526 GCTTGGGAGCTCTACTCTACTC 59.378 54.545 14.64 0.00 45.65 2.59
4964 8297 3.687264 GCTTGGGAGCTCTACTCTACTCT 60.687 52.174 14.64 0.00 45.65 3.24
4966 8299 4.693042 TGGGAGCTCTACTCTACTCTAC 57.307 50.000 14.64 0.00 45.48 2.59
4967 8300 4.300345 TGGGAGCTCTACTCTACTCTACT 58.700 47.826 14.64 0.00 45.48 2.57
4968 8301 4.345837 TGGGAGCTCTACTCTACTCTACTC 59.654 50.000 14.64 0.00 45.48 2.59
4969 8302 4.553323 GGAGCTCTACTCTACTCTACTCG 58.447 52.174 14.64 0.00 45.48 4.18
4970 8303 4.553323 GAGCTCTACTCTACTCTACTCGG 58.447 52.174 6.43 0.00 42.62 4.63
4971 8304 3.962718 AGCTCTACTCTACTCTACTCGGT 59.037 47.826 0.00 0.00 0.00 4.69
4972 8305 5.139727 AGCTCTACTCTACTCTACTCGGTA 58.860 45.833 0.00 0.00 0.00 4.02
4973 8306 5.242393 AGCTCTACTCTACTCTACTCGGTAG 59.758 48.000 5.09 5.09 37.47 3.18
4974 8307 5.010012 GCTCTACTCTACTCTACTCGGTAGT 59.990 48.000 9.84 0.00 37.41 2.73
4975 8308 6.206634 GCTCTACTCTACTCTACTCGGTAGTA 59.793 46.154 9.84 0.00 37.41 1.82
4976 8309 7.094205 GCTCTACTCTACTCTACTCGGTAGTAT 60.094 44.444 9.84 4.14 37.57 2.12
4977 8310 8.335532 TCTACTCTACTCTACTCGGTAGTATC 57.664 42.308 9.84 0.00 37.57 2.24
4978 8311 6.975196 ACTCTACTCTACTCGGTAGTATCA 57.025 41.667 9.84 0.00 37.57 2.15
4979 8312 7.543359 ACTCTACTCTACTCGGTAGTATCAT 57.457 40.000 9.84 0.00 37.57 2.45
5055 8388 2.226674 CGGGGCTTTCTTCTTCTTGTTC 59.773 50.000 0.00 0.00 0.00 3.18
5080 8413 1.450312 AGGCTCGGCAAAATCGGAG 60.450 57.895 0.00 0.00 36.75 4.63
5111 8447 2.489938 TCCCAGAAACACATAGCCAC 57.510 50.000 0.00 0.00 0.00 5.01
5112 8448 1.086696 CCCAGAAACACATAGCCACG 58.913 55.000 0.00 0.00 0.00 4.94
5113 8449 1.338674 CCCAGAAACACATAGCCACGA 60.339 52.381 0.00 0.00 0.00 4.35
5114 8450 1.732259 CCAGAAACACATAGCCACGAC 59.268 52.381 0.00 0.00 0.00 4.34
5115 8451 2.412870 CAGAAACACATAGCCACGACA 58.587 47.619 0.00 0.00 0.00 4.35
5116 8452 3.002791 CAGAAACACATAGCCACGACAT 58.997 45.455 0.00 0.00 0.00 3.06
5117 8453 4.180817 CAGAAACACATAGCCACGACATA 58.819 43.478 0.00 0.00 0.00 2.29
5118 8454 4.629634 CAGAAACACATAGCCACGACATAA 59.370 41.667 0.00 0.00 0.00 1.90
5119 8455 4.630069 AGAAACACATAGCCACGACATAAC 59.370 41.667 0.00 0.00 0.00 1.89
5120 8456 2.901249 ACACATAGCCACGACATAACC 58.099 47.619 0.00 0.00 0.00 2.85
5121 8457 1.858458 CACATAGCCACGACATAACCG 59.142 52.381 0.00 0.00 0.00 4.44
5122 8458 0.859232 CATAGCCACGACATAACCGC 59.141 55.000 0.00 0.00 0.00 5.68
5123 8459 0.249741 ATAGCCACGACATAACCGCC 60.250 55.000 0.00 0.00 0.00 6.13
5124 8460 2.300850 TAGCCACGACATAACCGCCC 62.301 60.000 0.00 0.00 0.00 6.13
5125 8461 2.888534 CCACGACATAACCGCCCG 60.889 66.667 0.00 0.00 0.00 6.13
5126 8462 2.182284 CACGACATAACCGCCCGA 59.818 61.111 0.00 0.00 0.00 5.14
5127 8463 1.446445 CACGACATAACCGCCCGAA 60.446 57.895 0.00 0.00 0.00 4.30
5128 8464 1.015085 CACGACATAACCGCCCGAAA 61.015 55.000 0.00 0.00 0.00 3.46
5129 8465 0.738412 ACGACATAACCGCCCGAAAG 60.738 55.000 0.00 0.00 0.00 2.62
5130 8466 0.458889 CGACATAACCGCCCGAAAGA 60.459 55.000 0.00 0.00 0.00 2.52
5131 8467 1.805120 CGACATAACCGCCCGAAAGAT 60.805 52.381 0.00 0.00 0.00 2.40
5132 8468 2.285977 GACATAACCGCCCGAAAGATT 58.714 47.619 0.00 0.00 0.00 2.40
5133 8469 3.460103 GACATAACCGCCCGAAAGATTA 58.540 45.455 0.00 0.00 0.00 1.75
5134 8470 3.463944 ACATAACCGCCCGAAAGATTAG 58.536 45.455 0.00 0.00 0.00 1.73
5135 8471 2.607631 TAACCGCCCGAAAGATTAGG 57.392 50.000 0.00 0.00 0.00 2.69
5136 8472 0.906775 AACCGCCCGAAAGATTAGGA 59.093 50.000 0.00 0.00 0.00 2.94
5137 8473 1.129058 ACCGCCCGAAAGATTAGGAT 58.871 50.000 0.00 0.00 0.00 3.24
5138 8474 1.070289 ACCGCCCGAAAGATTAGGATC 59.930 52.381 0.00 0.00 0.00 3.36
5139 8475 1.419374 CGCCCGAAAGATTAGGATCG 58.581 55.000 0.00 0.00 37.37 3.69
5140 8476 1.149148 GCCCGAAAGATTAGGATCGC 58.851 55.000 0.00 0.00 37.37 4.58
5141 8477 1.540363 GCCCGAAAGATTAGGATCGCA 60.540 52.381 0.00 0.00 37.37 5.10
5142 8478 2.135933 CCCGAAAGATTAGGATCGCAC 58.864 52.381 0.00 0.00 37.37 5.34
5143 8479 1.787155 CCGAAAGATTAGGATCGCACG 59.213 52.381 0.00 0.00 37.37 5.34
5144 8480 2.543031 CCGAAAGATTAGGATCGCACGA 60.543 50.000 0.00 0.00 37.37 4.35
5145 8481 2.721603 CGAAAGATTAGGATCGCACGAG 59.278 50.000 0.00 0.00 37.37 4.18
5146 8482 2.802787 AAGATTAGGATCGCACGAGG 57.197 50.000 0.00 0.00 37.37 4.63
5147 8483 0.315568 AGATTAGGATCGCACGAGGC 59.684 55.000 0.00 0.00 37.37 4.70
5156 8492 3.433319 GCACGAGGCGATCTAGGA 58.567 61.111 0.00 0.00 0.00 2.94
5157 8493 1.284408 GCACGAGGCGATCTAGGAG 59.716 63.158 0.00 0.00 0.00 3.69
5158 8494 1.953017 CACGAGGCGATCTAGGAGG 59.047 63.158 0.00 0.00 0.00 4.30
5159 8495 1.899534 ACGAGGCGATCTAGGAGGC 60.900 63.158 0.00 0.00 0.00 4.70
5160 8496 2.958576 GAGGCGATCTAGGAGGCG 59.041 66.667 0.00 0.00 35.47 5.52
5161 8497 1.601197 GAGGCGATCTAGGAGGCGA 60.601 63.158 0.00 0.00 35.47 5.54
5162 8498 1.858372 GAGGCGATCTAGGAGGCGAC 61.858 65.000 0.00 0.00 35.47 5.19
5163 8499 2.252855 GCGATCTAGGAGGCGACG 59.747 66.667 0.00 0.00 0.00 5.12
5164 8500 2.252346 GCGATCTAGGAGGCGACGA 61.252 63.158 0.00 0.00 0.00 4.20
5165 8501 1.863491 CGATCTAGGAGGCGACGAG 59.137 63.158 0.00 0.00 0.00 4.18
5166 8502 1.570347 CGATCTAGGAGGCGACGAGG 61.570 65.000 0.00 0.00 0.00 4.63
5167 8503 1.228306 ATCTAGGAGGCGACGAGGG 60.228 63.158 0.00 0.00 0.00 4.30
5168 8504 1.997256 ATCTAGGAGGCGACGAGGGT 61.997 60.000 0.00 0.00 0.00 4.34
5169 8505 1.753463 CTAGGAGGCGACGAGGGTT 60.753 63.158 0.00 0.00 0.00 4.11
5170 8506 1.726533 CTAGGAGGCGACGAGGGTTC 61.727 65.000 0.00 0.00 0.00 3.62
5171 8507 4.144703 GGAGGCGACGAGGGTTCC 62.145 72.222 0.00 0.00 0.00 3.62
5172 8508 4.144703 GAGGCGACGAGGGTTCCC 62.145 72.222 0.00 0.00 0.00 3.97
5173 8509 4.698625 AGGCGACGAGGGTTCCCT 62.699 66.667 10.51 10.51 39.51 4.20
5174 8510 4.452733 GGCGACGAGGGTTCCCTG 62.453 72.222 15.80 9.93 36.43 4.45
5176 8512 4.796231 CGACGAGGGTTCCCTGCG 62.796 72.222 15.80 18.41 36.43 5.18
5207 8543 4.717313 GCCGCCGGTTCCCTTTCT 62.717 66.667 4.45 0.00 0.00 2.52
5208 8544 2.436115 CCGCCGGTTCCCTTTCTC 60.436 66.667 1.90 0.00 0.00 2.87
5209 8545 2.663196 CGCCGGTTCCCTTTCTCT 59.337 61.111 1.90 0.00 0.00 3.10
5210 8546 1.448013 CGCCGGTTCCCTTTCTCTC 60.448 63.158 1.90 0.00 0.00 3.20
5211 8547 1.078356 GCCGGTTCCCTTTCTCTCC 60.078 63.158 1.90 0.00 0.00 3.71
5212 8548 1.218316 CCGGTTCCCTTTCTCTCCG 59.782 63.158 0.00 0.00 38.05 4.63
5213 8549 1.542187 CCGGTTCCCTTTCTCTCCGT 61.542 60.000 0.00 0.00 36.84 4.69
5214 8550 0.108756 CGGTTCCCTTTCTCTCCGTC 60.109 60.000 0.00 0.00 34.38 4.79
5215 8551 0.108756 GGTTCCCTTTCTCTCCGTCG 60.109 60.000 0.00 0.00 0.00 5.12
5216 8552 0.108756 GTTCCCTTTCTCTCCGTCGG 60.109 60.000 4.39 4.39 0.00 4.79
5217 8553 1.885163 TTCCCTTTCTCTCCGTCGGC 61.885 60.000 6.34 0.00 0.00 5.54
5218 8554 2.184579 CCTTTCTCTCCGTCGGCC 59.815 66.667 6.34 0.00 0.00 6.13
5219 8555 2.202623 CTTTCTCTCCGTCGGCCG 60.203 66.667 22.12 22.12 0.00 6.13
5220 8556 4.430765 TTTCTCTCCGTCGGCCGC 62.431 66.667 23.51 15.21 34.38 6.53
5244 8580 4.364686 GGTGGGAGGGAGGGGGAA 62.365 72.222 0.00 0.00 0.00 3.97
5245 8581 3.015753 GTGGGAGGGAGGGGGAAC 61.016 72.222 0.00 0.00 0.00 3.62
5259 8595 1.080025 GGAACCTCGGGTCTGTTCG 60.080 63.158 0.36 0.00 39.36 3.95
5260 8596 1.737008 GAACCTCGGGTCTGTTCGC 60.737 63.158 0.00 0.00 33.12 4.70
5261 8597 2.156051 GAACCTCGGGTCTGTTCGCT 62.156 60.000 0.00 0.00 33.12 4.93
5262 8598 0.896940 AACCTCGGGTCTGTTCGCTA 60.897 55.000 0.00 0.00 33.12 4.26
5263 8599 1.313812 ACCTCGGGTCTGTTCGCTAG 61.314 60.000 0.00 0.00 0.00 3.42
5264 8600 1.433879 CTCGGGTCTGTTCGCTAGG 59.566 63.158 0.00 0.00 0.00 3.02
5265 8601 1.303888 TCGGGTCTGTTCGCTAGGT 60.304 57.895 0.00 0.00 0.00 3.08
5266 8602 1.153823 CGGGTCTGTTCGCTAGGTG 60.154 63.158 0.00 0.00 0.00 4.00
5267 8603 1.218316 GGGTCTGTTCGCTAGGTGG 59.782 63.158 0.00 0.00 0.00 4.61
5268 8604 1.218316 GGTCTGTTCGCTAGGTGGG 59.782 63.158 0.00 0.00 0.00 4.61
5269 8605 1.542187 GGTCTGTTCGCTAGGTGGGT 61.542 60.000 0.00 0.00 0.00 4.51
5270 8606 0.389948 GTCTGTTCGCTAGGTGGGTG 60.390 60.000 0.00 0.00 0.00 4.61
5271 8607 0.830444 TCTGTTCGCTAGGTGGGTGT 60.830 55.000 0.00 0.00 0.00 4.16
5272 8608 0.670546 CTGTTCGCTAGGTGGGTGTG 60.671 60.000 0.00 0.00 0.00 3.82
5273 8609 1.370064 GTTCGCTAGGTGGGTGTGT 59.630 57.895 0.00 0.00 0.00 3.72
5274 8610 0.949105 GTTCGCTAGGTGGGTGTGTG 60.949 60.000 0.00 0.00 0.00 3.82
5275 8611 2.047274 CGCTAGGTGGGTGTGTGG 60.047 66.667 0.00 0.00 0.00 4.17
5276 8612 2.879233 CGCTAGGTGGGTGTGTGGT 61.879 63.158 0.00 0.00 0.00 4.16
5277 8613 1.537814 CGCTAGGTGGGTGTGTGGTA 61.538 60.000 0.00 0.00 0.00 3.25
5278 8614 0.249398 GCTAGGTGGGTGTGTGGTAG 59.751 60.000 0.00 0.00 0.00 3.18
5279 8615 0.902531 CTAGGTGGGTGTGTGGTAGG 59.097 60.000 0.00 0.00 0.00 3.18
5280 8616 0.488220 TAGGTGGGTGTGTGGTAGGA 59.512 55.000 0.00 0.00 0.00 2.94
5281 8617 0.178873 AGGTGGGTGTGTGGTAGGAT 60.179 55.000 0.00 0.00 0.00 3.24
5282 8618 0.696501 GGTGGGTGTGTGGTAGGATT 59.303 55.000 0.00 0.00 0.00 3.01
5283 8619 1.910671 GGTGGGTGTGTGGTAGGATTA 59.089 52.381 0.00 0.00 0.00 1.75
5284 8620 2.093128 GGTGGGTGTGTGGTAGGATTAG 60.093 54.545 0.00 0.00 0.00 1.73
5285 8621 2.093128 GTGGGTGTGTGGTAGGATTAGG 60.093 54.545 0.00 0.00 0.00 2.69
5286 8622 1.489230 GGGTGTGTGGTAGGATTAGGG 59.511 57.143 0.00 0.00 0.00 3.53
5287 8623 2.193993 GGTGTGTGGTAGGATTAGGGT 58.806 52.381 0.00 0.00 0.00 4.34
5288 8624 2.574824 GGTGTGTGGTAGGATTAGGGTT 59.425 50.000 0.00 0.00 0.00 4.11
5289 8625 3.606687 GTGTGTGGTAGGATTAGGGTTG 58.393 50.000 0.00 0.00 0.00 3.77
5290 8626 3.262405 GTGTGTGGTAGGATTAGGGTTGA 59.738 47.826 0.00 0.00 0.00 3.18
5291 8627 3.517901 TGTGTGGTAGGATTAGGGTTGAG 59.482 47.826 0.00 0.00 0.00 3.02
5292 8628 3.112263 TGTGGTAGGATTAGGGTTGAGG 58.888 50.000 0.00 0.00 0.00 3.86
5293 8629 2.438392 GTGGTAGGATTAGGGTTGAGGG 59.562 54.545 0.00 0.00 0.00 4.30
5294 8630 2.319747 TGGTAGGATTAGGGTTGAGGGA 59.680 50.000 0.00 0.00 0.00 4.20
5295 8631 2.973406 GGTAGGATTAGGGTTGAGGGAG 59.027 54.545 0.00 0.00 0.00 4.30
5296 8632 3.374984 GGTAGGATTAGGGTTGAGGGAGA 60.375 52.174 0.00 0.00 0.00 3.71
5297 8633 2.765502 AGGATTAGGGTTGAGGGAGAC 58.234 52.381 0.00 0.00 0.00 3.36
5298 8634 1.413077 GGATTAGGGTTGAGGGAGACG 59.587 57.143 0.00 0.00 0.00 4.18
5299 8635 0.831307 ATTAGGGTTGAGGGAGACGC 59.169 55.000 0.00 0.00 0.00 5.19
5300 8636 0.252103 TTAGGGTTGAGGGAGACGCT 60.252 55.000 0.00 0.00 41.26 5.07
5301 8637 0.970937 TAGGGTTGAGGGAGACGCTG 60.971 60.000 3.70 0.00 39.12 5.18
5302 8638 2.435059 GGTTGAGGGAGACGCTGC 60.435 66.667 0.00 0.00 0.00 5.25
5303 8639 2.435059 GTTGAGGGAGACGCTGCC 60.435 66.667 8.90 8.90 42.52 4.85
5304 8640 4.069232 TTGAGGGAGACGCTGCCG 62.069 66.667 10.70 0.00 46.84 5.69
5306 8642 4.200283 GAGGGAGACGCTGCCGAG 62.200 72.222 10.70 0.00 46.84 4.63
5325 8661 3.645975 CCGTTGCGGTGGTGTCAC 61.646 66.667 0.00 0.00 42.73 3.67
5326 8662 3.995669 CGTTGCGGTGGTGTCACG 61.996 66.667 0.00 0.00 44.50 4.35
5327 8663 2.893404 GTTGCGGTGGTGTCACGT 60.893 61.111 0.00 0.00 44.50 4.49
5328 8664 2.586635 TTGCGGTGGTGTCACGTC 60.587 61.111 0.00 0.00 44.50 4.34
5329 8665 3.372554 TTGCGGTGGTGTCACGTCA 62.373 57.895 0.00 0.00 44.50 4.35
5330 8666 3.036084 GCGGTGGTGTCACGTCAG 61.036 66.667 0.00 0.00 44.50 3.51
5331 8667 2.725641 CGGTGGTGTCACGTCAGA 59.274 61.111 0.00 0.00 44.50 3.27
5332 8668 1.066752 CGGTGGTGTCACGTCAGAA 59.933 57.895 0.00 0.00 44.50 3.02
5333 8669 0.319555 CGGTGGTGTCACGTCAGAAT 60.320 55.000 0.00 0.00 44.50 2.40
5334 8670 1.068125 CGGTGGTGTCACGTCAGAATA 60.068 52.381 0.00 0.00 44.50 1.75
5335 8671 2.608506 CGGTGGTGTCACGTCAGAATAA 60.609 50.000 0.00 0.00 44.50 1.40
5336 8672 2.993899 GGTGGTGTCACGTCAGAATAAG 59.006 50.000 0.00 0.00 44.50 1.73
5337 8673 3.554337 GGTGGTGTCACGTCAGAATAAGT 60.554 47.826 0.00 0.00 44.50 2.24
5338 8674 4.056050 GTGGTGTCACGTCAGAATAAGTT 58.944 43.478 0.00 0.00 33.87 2.66
5339 8675 4.510340 GTGGTGTCACGTCAGAATAAGTTT 59.490 41.667 0.00 0.00 33.87 2.66
5340 8676 4.748102 TGGTGTCACGTCAGAATAAGTTTC 59.252 41.667 0.00 0.00 0.00 2.78
5341 8677 4.989168 GGTGTCACGTCAGAATAAGTTTCT 59.011 41.667 0.00 0.00 0.00 2.52
5342 8678 5.118817 GGTGTCACGTCAGAATAAGTTTCTC 59.881 44.000 0.00 0.00 0.00 2.87
5343 8679 5.118817 GTGTCACGTCAGAATAAGTTTCTCC 59.881 44.000 0.00 0.00 0.00 3.71
5344 8680 4.323868 GTCACGTCAGAATAAGTTTCTCCG 59.676 45.833 0.00 0.00 0.00 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 5.099042 ACTTGGAGAGAGAGAGAGAGTAC 57.901 47.826 0.00 0.00 0.00 2.73
6 7 6.199376 TCTACTTGGAGAGAGAGAGAGAGTA 58.801 44.000 0.00 0.00 0.00 2.59
7 8 5.030147 TCTACTTGGAGAGAGAGAGAGAGT 58.970 45.833 0.00 0.00 0.00 3.24
23 24 6.802348 CGAGTAATGTTCGGGATATCTACTTG 59.198 42.308 2.05 0.81 34.56 3.16
24 25 6.489361 ACGAGTAATGTTCGGGATATCTACTT 59.511 38.462 2.05 0.00 42.12 2.24
50 58 5.080337 CACCTCTAGCCATGGTTCTATAGA 58.920 45.833 14.67 11.88 30.72 1.98
51 59 4.322349 GCACCTCTAGCCATGGTTCTATAG 60.322 50.000 14.67 8.87 30.72 1.31
53 61 2.370189 GCACCTCTAGCCATGGTTCTAT 59.630 50.000 14.67 0.00 30.72 1.98
56 64 0.811616 CGCACCTCTAGCCATGGTTC 60.812 60.000 14.67 0.00 30.72 3.62
57 65 1.221840 CGCACCTCTAGCCATGGTT 59.778 57.895 14.67 10.52 30.72 3.67
58 66 2.735772 CCGCACCTCTAGCCATGGT 61.736 63.158 14.67 2.69 33.87 3.55
59 67 2.109799 CCGCACCTCTAGCCATGG 59.890 66.667 7.63 7.63 0.00 3.66
60 68 1.227380 GACCGCACCTCTAGCCATG 60.227 63.158 0.00 0.00 0.00 3.66
65 73 2.427245 CCCCAGACCGCACCTCTAG 61.427 68.421 0.00 0.00 0.00 2.43
78 86 1.032014 CAACAACAACCACTCCCCAG 58.968 55.000 0.00 0.00 0.00 4.45
79 87 0.626382 TCAACAACAACCACTCCCCA 59.374 50.000 0.00 0.00 0.00 4.96
86 94 2.159254 GCAAGCTTCTCAACAACAACCA 60.159 45.455 0.00 0.00 0.00 3.67
124 141 4.760204 ACTTAGCATGTAAGGGTCAACAAC 59.240 41.667 15.13 0.00 0.00 3.32
166 183 5.726397 ACCGTGACAACAATAGCAATAGTA 58.274 37.500 0.00 0.00 0.00 1.82
168 185 4.034048 GGACCGTGACAACAATAGCAATAG 59.966 45.833 0.00 0.00 0.00 1.73
203 220 0.321564 TCGCTCCTCCACCAACAATG 60.322 55.000 0.00 0.00 0.00 2.82
226 243 3.442076 AGTAAATCAGAACGGAGGGAGT 58.558 45.455 0.00 0.00 0.00 3.85
227 244 3.489398 CGAGTAAATCAGAACGGAGGGAG 60.489 52.174 0.00 0.00 0.00 4.30
228 245 2.426024 CGAGTAAATCAGAACGGAGGGA 59.574 50.000 0.00 0.00 0.00 4.20
229 246 2.165845 ACGAGTAAATCAGAACGGAGGG 59.834 50.000 0.00 0.00 0.00 4.30
230 247 3.436496 GACGAGTAAATCAGAACGGAGG 58.564 50.000 0.00 0.00 0.00 4.30
231 248 3.099362 CGACGAGTAAATCAGAACGGAG 58.901 50.000 0.00 0.00 0.00 4.63
232 249 2.485426 ACGACGAGTAAATCAGAACGGA 59.515 45.455 0.00 0.00 0.00 4.69
233 250 2.844804 GACGACGAGTAAATCAGAACGG 59.155 50.000 0.00 0.00 0.00 4.44
234 251 2.521146 CGACGACGAGTAAATCAGAACG 59.479 50.000 0.00 0.00 42.66 3.95
235 252 3.486584 ACGACGACGAGTAAATCAGAAC 58.513 45.455 15.32 0.00 42.66 3.01
236 253 3.818961 ACGACGACGAGTAAATCAGAA 57.181 42.857 15.32 0.00 42.66 3.02
237 254 3.818961 AACGACGACGAGTAAATCAGA 57.181 42.857 15.32 0.00 42.66 3.27
238 255 4.880760 AAAACGACGACGAGTAAATCAG 57.119 40.909 15.32 0.00 42.66 2.90
239 256 5.451908 ACTAAAACGACGACGAGTAAATCA 58.548 37.500 15.32 0.00 42.66 2.57
240 257 5.982056 ACTAAAACGACGACGAGTAAATC 57.018 39.130 15.32 0.00 42.66 2.17
241 258 5.914635 TGAACTAAAACGACGACGAGTAAAT 59.085 36.000 15.32 0.00 42.66 1.40
242 259 5.270083 TGAACTAAAACGACGACGAGTAAA 58.730 37.500 15.32 0.00 42.66 2.01
243 260 4.843147 TGAACTAAAACGACGACGAGTAA 58.157 39.130 15.32 0.00 42.66 2.24
244 261 4.466567 TGAACTAAAACGACGACGAGTA 57.533 40.909 15.32 2.12 42.66 2.59
245 262 3.338818 TGAACTAAAACGACGACGAGT 57.661 42.857 15.32 3.83 42.66 4.18
246 263 4.680934 TTTGAACTAAAACGACGACGAG 57.319 40.909 15.32 3.14 42.66 4.18
247 264 5.640218 AATTTGAACTAAAACGACGACGA 57.360 34.783 15.32 0.00 42.66 4.20
248 265 5.897518 TCAAATTTGAACTAAAACGACGACG 59.102 36.000 18.45 5.58 38.75 5.12
249 266 7.653523 TTCAAATTTGAACTAAAACGACGAC 57.346 32.000 26.01 0.00 41.88 4.34
262 279 8.675504 TCGTAGTGGTTTTAGTTCAAATTTGAA 58.324 29.630 26.01 26.01 44.31 2.69
263 280 8.211116 TCGTAGTGGTTTTAGTTCAAATTTGA 57.789 30.769 16.91 16.91 34.92 2.69
264 281 8.126700 ACTCGTAGTGGTTTTAGTTCAAATTTG 58.873 33.333 12.15 12.15 0.00 2.32
265 282 8.217131 ACTCGTAGTGGTTTTAGTTCAAATTT 57.783 30.769 0.00 0.00 0.00 1.82
266 283 7.797038 ACTCGTAGTGGTTTTAGTTCAAATT 57.203 32.000 0.00 0.00 0.00 1.82
267 284 8.891671 TTACTCGTAGTGGTTTTAGTTCAAAT 57.108 30.769 0.00 0.00 0.00 2.32
268 285 8.715191 TTTACTCGTAGTGGTTTTAGTTCAAA 57.285 30.769 0.00 0.00 0.00 2.69
269 286 8.891671 ATTTACTCGTAGTGGTTTTAGTTCAA 57.108 30.769 0.00 0.00 0.00 2.69
270 287 7.326789 CGATTTACTCGTAGTGGTTTTAGTTCA 59.673 37.037 0.00 0.00 42.56 3.18
271 288 7.201384 CCGATTTACTCGTAGTGGTTTTAGTTC 60.201 40.741 0.00 0.00 46.18 3.01
272 289 6.587608 CCGATTTACTCGTAGTGGTTTTAGTT 59.412 38.462 0.00 0.00 46.18 2.24
273 290 6.071952 TCCGATTTACTCGTAGTGGTTTTAGT 60.072 38.462 0.00 0.00 46.18 2.24
274 291 6.324819 TCCGATTTACTCGTAGTGGTTTTAG 58.675 40.000 0.00 0.00 46.18 1.85
275 292 6.266168 TCCGATTTACTCGTAGTGGTTTTA 57.734 37.500 0.00 0.00 46.18 1.52
276 293 5.138125 TCCGATTTACTCGTAGTGGTTTT 57.862 39.130 0.00 0.00 46.18 2.43
277 294 4.789012 TCCGATTTACTCGTAGTGGTTT 57.211 40.909 0.00 0.00 46.18 3.27
278 295 4.488879 GTTCCGATTTACTCGTAGTGGTT 58.511 43.478 0.00 0.00 46.18 3.67
279 296 3.426695 CGTTCCGATTTACTCGTAGTGGT 60.427 47.826 0.00 0.00 46.18 4.16
280 297 3.103738 CGTTCCGATTTACTCGTAGTGG 58.896 50.000 0.00 0.00 46.18 4.00
281 298 3.103738 CCGTTCCGATTTACTCGTAGTG 58.896 50.000 0.00 0.00 46.18 2.74
282 299 3.009723 TCCGTTCCGATTTACTCGTAGT 58.990 45.455 0.00 0.00 46.18 2.73
283 300 3.547613 CCTCCGTTCCGATTTACTCGTAG 60.548 52.174 0.00 0.00 46.18 3.51
284 301 2.355756 CCTCCGTTCCGATTTACTCGTA 59.644 50.000 0.00 0.00 46.18 3.43
285 302 1.133790 CCTCCGTTCCGATTTACTCGT 59.866 52.381 0.00 0.00 46.18 4.18
287 304 1.479730 ACCCTCCGTTCCGATTTACTC 59.520 52.381 0.00 0.00 0.00 2.59
288 305 1.565067 ACCCTCCGTTCCGATTTACT 58.435 50.000 0.00 0.00 0.00 2.24
289 306 3.068590 TCATACCCTCCGTTCCGATTTAC 59.931 47.826 0.00 0.00 0.00 2.01
290 307 3.298619 TCATACCCTCCGTTCCGATTTA 58.701 45.455 0.00 0.00 0.00 1.40
291 308 2.112998 TCATACCCTCCGTTCCGATTT 58.887 47.619 0.00 0.00 0.00 2.17
292 309 1.784358 TCATACCCTCCGTTCCGATT 58.216 50.000 0.00 0.00 0.00 3.34
293 310 2.011122 ATCATACCCTCCGTTCCGAT 57.989 50.000 0.00 0.00 0.00 4.18
294 311 2.662535 TATCATACCCTCCGTTCCGA 57.337 50.000 0.00 0.00 0.00 4.55
295 312 3.006537 ACAATATCATACCCTCCGTTCCG 59.993 47.826 0.00 0.00 0.00 4.30
296 313 4.618920 ACAATATCATACCCTCCGTTCC 57.381 45.455 0.00 0.00 0.00 3.62
297 314 6.937436 AAAACAATATCATACCCTCCGTTC 57.063 37.500 0.00 0.00 0.00 3.95
298 315 7.116736 AGAAAAACAATATCATACCCTCCGTT 58.883 34.615 0.00 0.00 0.00 4.44
299 316 6.659824 AGAAAAACAATATCATACCCTCCGT 58.340 36.000 0.00 0.00 0.00 4.69
300 317 7.417612 CAAGAAAAACAATATCATACCCTCCG 58.582 38.462 0.00 0.00 0.00 4.63
301 318 7.203218 GCAAGAAAAACAATATCATACCCTCC 58.797 38.462 0.00 0.00 0.00 4.30
302 319 7.147915 TGGCAAGAAAAACAATATCATACCCTC 60.148 37.037 0.00 0.00 0.00 4.30
303 320 6.667414 TGGCAAGAAAAACAATATCATACCCT 59.333 34.615 0.00 0.00 0.00 4.34
304 321 6.872920 TGGCAAGAAAAACAATATCATACCC 58.127 36.000 0.00 0.00 0.00 3.69
305 322 7.981225 ACATGGCAAGAAAAACAATATCATACC 59.019 33.333 0.00 0.00 0.00 2.73
306 323 8.931385 ACATGGCAAGAAAAACAATATCATAC 57.069 30.769 0.00 0.00 0.00 2.39
307 324 8.747471 TGACATGGCAAGAAAAACAATATCATA 58.253 29.630 0.00 0.00 0.00 2.15
310 327 7.092716 ACTGACATGGCAAGAAAAACAATATC 58.907 34.615 1.11 0.00 0.00 1.63
342 359 5.944013 TCGAACTTGACAAATCAAACACAA 58.056 33.333 0.00 0.00 44.28 3.33
344 361 5.108254 GCATCGAACTTGACAAATCAAACAC 60.108 40.000 0.00 0.00 44.28 3.32
347 364 4.037327 TGGCATCGAACTTGACAAATCAAA 59.963 37.500 0.00 0.00 44.28 2.69
480 497 8.234546 TGATTTAAAGCGAAGGAAATACAAGAC 58.765 33.333 0.00 0.00 0.00 3.01
702 816 5.754778 CCTCGTCAATTTAACCGAAGTTTT 58.245 37.500 0.00 0.00 37.42 2.43
1415 1546 1.201647 CCGTAGAACACATCCACGTCT 59.798 52.381 0.00 0.00 40.88 4.18
1529 1660 2.828145 GCCAGATCCTCCTCTGCC 59.172 66.667 0.00 0.00 41.12 4.85
1532 1663 3.050089 GATCGCCAGATCCTCCTCT 57.950 57.895 0.00 0.00 45.73 3.69
1701 1832 9.793252 TTGTACTCCGTTATGAACTCTATAAAC 57.207 33.333 0.00 0.00 0.00 2.01
1713 1844 4.682787 TCAGATGCTTGTACTCCGTTATG 58.317 43.478 0.00 0.00 0.00 1.90
1772 1909 7.114811 CAGGAAGAATGTTTCACAAAATTACGG 59.885 37.037 0.00 0.00 0.00 4.02
1798 1935 2.185004 TCCTTGGCTTTGCTCTGTAC 57.815 50.000 0.00 0.00 0.00 2.90
1995 2132 3.067106 AGCACAAATTACCTGTCGTGAG 58.933 45.455 0.00 0.00 0.00 3.51
2039 2176 5.063880 ACACTAAGTGAGATTTTCCACCAC 58.936 41.667 0.00 0.00 36.96 4.16
2162 2359 2.885135 ATGACTGTTTCCATCCAGCA 57.115 45.000 0.00 0.00 31.76 4.41
2198 2395 0.549169 TGGGTAGAGGTTCCCCTTGG 60.549 60.000 0.00 0.00 42.86 3.61
2202 2399 3.323775 TCAATATGGGTAGAGGTTCCCC 58.676 50.000 0.00 0.00 42.80 4.81
2224 2421 6.912591 GCATACAAATGACCAGCAAGTATTAC 59.087 38.462 0.00 0.00 34.84 1.89
2283 2480 6.013725 GGTCTAAAAGGGGTCCAAATTTGATT 60.014 38.462 19.86 2.05 0.00 2.57
2306 2503 5.571791 TTACCCAACTAGCTAAACAAGGT 57.428 39.130 0.00 1.34 39.81 3.50
2481 2680 6.208402 TGCTACCAACTGAATATGCAAGAAAA 59.792 34.615 0.00 0.00 0.00 2.29
2594 2794 8.397148 AGCGTCAGTAAGTCTATTTCTTAGTAC 58.603 37.037 0.00 0.00 32.10 2.73
2617 2820 8.370493 TGATTATGAAGAGGATAAAAGAAGCG 57.630 34.615 0.00 0.00 0.00 4.68
2682 2885 5.398236 ACATCTACTAGTGCCATCATACCT 58.602 41.667 5.39 0.00 0.00 3.08
2700 2903 4.156922 CGGTTGAAGAGACAGTAGACATCT 59.843 45.833 0.00 0.00 0.00 2.90
2764 2967 5.181245 CACAAGTGACAAGGGAATTTCGTAT 59.819 40.000 0.00 0.00 0.00 3.06
2962 3168 9.535878 TTTGTTTTTACAAAACCACTATGGATC 57.464 29.630 0.84 0.00 36.84 3.36
3151 3360 5.057843 ACATCTGGACTTATCATTGCCAT 57.942 39.130 0.00 0.00 0.00 4.40
3241 3462 2.260844 TTTGCCAGGTCAAGAGACAG 57.739 50.000 0.00 0.00 46.80 3.51
3356 3577 1.727467 GCGACAAGCCAACAAGTGT 59.273 52.632 0.00 0.00 40.81 3.55
3382 3603 6.561519 ACTACTAAAGATGGTAGGTGCAAT 57.438 37.500 0.00 0.00 43.00 3.56
3596 3820 7.230849 ACATGTCTTGCCAATATTTGAAAGA 57.769 32.000 5.96 5.96 33.59 2.52
3604 3828 8.850156 GGAACTAAATACATGTCTTGCCAATAT 58.150 33.333 0.00 0.00 0.00 1.28
3784 4015 9.781834 CAACTATAAGTTCTTTCAACAACAACA 57.218 29.630 0.00 0.00 36.03 3.33
3791 4022 9.968743 CGGAATACAACTATAAGTTCTTTCAAC 57.031 33.333 0.00 0.00 36.03 3.18
3819 4051 6.976088 TGCTCGGAAAATAACATGAGAAAAA 58.024 32.000 0.00 0.00 0.00 1.94
3825 4058 3.693578 TGCATGCTCGGAAAATAACATGA 59.306 39.130 20.33 0.00 37.65 3.07
3838 4071 5.446709 CATTTCCTTACTAATGCATGCTCG 58.553 41.667 20.33 6.88 0.00 5.03
3856 6884 4.142687 ACACAGTAAAGCGCATACCATTTC 60.143 41.667 11.47 0.00 0.00 2.17
3894 6926 4.122776 CAAGTGTGGTATAGTCCATGAGC 58.877 47.826 0.00 0.00 39.81 4.26
3924 6956 2.922950 AATGTGCTGCCGTTGCCAG 61.923 57.895 0.00 0.00 36.33 4.85
3961 6993 1.918262 TCAATCAGCTGAACTCCCCAT 59.082 47.619 22.50 0.00 0.00 4.00
3993 7025 3.570125 GGGGAGTATTCAGGCAAAATAGC 59.430 47.826 0.00 0.00 0.00 2.97
4105 7149 5.642491 GTCTTGTAATTTGTACTCCCTCCAC 59.358 44.000 0.00 0.00 0.00 4.02
4106 7150 5.308497 TGTCTTGTAATTTGTACTCCCTCCA 59.692 40.000 0.00 0.00 0.00 3.86
4142 7186 7.661027 ACCAAAAGTCATTTATCAACCAAATGG 59.339 33.333 7.68 0.00 41.58 3.16
4175 7219 9.778993 CAAAATCCTCAACTCAACTTACATATG 57.221 33.333 0.00 0.00 0.00 1.78
4225 7269 5.406175 CCATTACATGCCTTTGTTGAAACTG 59.594 40.000 0.00 0.00 0.00 3.16
4263 7307 4.395854 TGCAGTACATAATGACTGGCAAAG 59.604 41.667 10.47 0.00 42.77 2.77
4333 7377 3.932710 TGATACGATGCCAAAACAGAGAC 59.067 43.478 0.00 0.00 0.00 3.36
4365 7409 3.258372 TGCTCGGCCTAAATAGGATACAG 59.742 47.826 10.71 1.67 46.63 2.74
4380 7424 1.196354 GATGCTGTTCATATGCTCGGC 59.804 52.381 17.74 17.74 35.05 5.54
4386 7430 7.933396 TGAAGTATTTGGATGCTGTTCATATG 58.067 34.615 0.00 0.00 35.05 1.78
4426 7470 2.399511 ATCAGCGGATGAGCGTCTCG 62.400 60.000 1.31 0.00 42.53 4.04
4483 7536 3.649277 GACCTCGAGTGCGGCACAT 62.649 63.158 32.29 18.53 36.74 3.21
4492 7545 3.063084 GTGCGGAGGACCTCGAGT 61.063 66.667 15.46 0.00 45.47 4.18
4535 7588 2.666022 GGAAAATGGTCGGCAAAAATCG 59.334 45.455 0.00 0.00 0.00 3.34
4569 7622 2.167398 GACGGTAGAGCACCCAAGCA 62.167 60.000 0.00 0.00 45.52 3.91
4570 7623 1.448013 GACGGTAGAGCACCCAAGC 60.448 63.158 0.00 0.00 45.52 4.01
4633 7686 4.481930 TGTTTTCCAACGTTGCAGATAG 57.518 40.909 22.93 8.15 35.40 2.08
4700 7753 5.339200 CCTTTCTACCCTAGCTGGAAATCAA 60.339 44.000 0.00 0.00 38.35 2.57
4770 7823 0.179156 GTGTTTCATCCGCATGCCTG 60.179 55.000 13.15 7.65 0.00 4.85
4948 8281 4.038402 ACCGAGTAGAGTAGAGTAGAGCTC 59.962 50.000 5.27 5.27 44.45 4.09
4959 8292 7.904205 TGATGATGATACTACCGAGTAGAGTA 58.096 38.462 15.28 4.33 41.50 2.59
4960 8293 6.770542 TGATGATGATACTACCGAGTAGAGT 58.229 40.000 15.28 5.72 41.50 3.24
4961 8294 7.064134 GTCTGATGATGATACTACCGAGTAGAG 59.936 44.444 15.28 2.19 41.50 2.43
4962 8295 6.874664 GTCTGATGATGATACTACCGAGTAGA 59.125 42.308 15.28 3.20 41.50 2.59
4963 8296 6.876789 AGTCTGATGATGATACTACCGAGTAG 59.123 42.308 8.87 8.87 41.50 2.57
4964 8297 6.770542 AGTCTGATGATGATACTACCGAGTA 58.229 40.000 0.00 0.00 42.41 2.59
4966 8299 6.567687 AAGTCTGATGATGATACTACCGAG 57.432 41.667 0.00 0.00 0.00 4.63
4967 8300 6.239036 CCAAAGTCTGATGATGATACTACCGA 60.239 42.308 0.00 0.00 0.00 4.69
4968 8301 5.923114 CCAAAGTCTGATGATGATACTACCG 59.077 44.000 0.00 0.00 0.00 4.02
4969 8302 5.698545 GCCAAAGTCTGATGATGATACTACC 59.301 44.000 0.00 0.00 0.00 3.18
4970 8303 6.520272 AGCCAAAGTCTGATGATGATACTAC 58.480 40.000 0.00 0.00 0.00 2.73
4971 8304 6.552725 AGAGCCAAAGTCTGATGATGATACTA 59.447 38.462 0.00 0.00 0.00 1.82
4972 8305 5.366186 AGAGCCAAAGTCTGATGATGATACT 59.634 40.000 0.00 0.00 0.00 2.12
4973 8306 5.609423 AGAGCCAAAGTCTGATGATGATAC 58.391 41.667 0.00 0.00 0.00 2.24
4974 8307 5.221601 GGAGAGCCAAAGTCTGATGATGATA 60.222 44.000 0.00 0.00 0.00 2.15
4975 8308 4.444591 GGAGAGCCAAAGTCTGATGATGAT 60.445 45.833 0.00 0.00 0.00 2.45
4976 8309 3.118482 GGAGAGCCAAAGTCTGATGATGA 60.118 47.826 0.00 0.00 0.00 2.92
4977 8310 3.204526 GGAGAGCCAAAGTCTGATGATG 58.795 50.000 0.00 0.00 0.00 3.07
4978 8311 2.158986 CGGAGAGCCAAAGTCTGATGAT 60.159 50.000 0.00 0.00 0.00 2.45
4979 8312 1.205655 CGGAGAGCCAAAGTCTGATGA 59.794 52.381 0.00 0.00 0.00 2.92
5055 8388 0.673437 TTTTGCCGAGCCTGAAAAGG 59.327 50.000 0.00 0.00 0.00 3.11
5080 8413 7.584122 TGTGTTTCTGGGATACTACTATCTC 57.416 40.000 0.00 0.00 31.08 2.75
5111 8447 0.458889 TCTTTCGGGCGGTTATGTCG 60.459 55.000 0.00 0.00 0.00 4.35
5112 8448 1.949465 ATCTTTCGGGCGGTTATGTC 58.051 50.000 0.00 0.00 0.00 3.06
5113 8449 2.413310 AATCTTTCGGGCGGTTATGT 57.587 45.000 0.00 0.00 0.00 2.29
5114 8450 2.806244 CCTAATCTTTCGGGCGGTTATG 59.194 50.000 0.00 0.00 0.00 1.90
5115 8451 2.701951 TCCTAATCTTTCGGGCGGTTAT 59.298 45.455 0.00 0.00 0.00 1.89
5116 8452 2.109774 TCCTAATCTTTCGGGCGGTTA 58.890 47.619 0.00 0.00 0.00 2.85
5117 8453 0.906775 TCCTAATCTTTCGGGCGGTT 59.093 50.000 0.00 0.00 0.00 4.44
5118 8454 1.070289 GATCCTAATCTTTCGGGCGGT 59.930 52.381 0.00 0.00 0.00 5.68
5119 8455 1.797025 GATCCTAATCTTTCGGGCGG 58.203 55.000 0.00 0.00 0.00 6.13
5120 8456 1.419374 CGATCCTAATCTTTCGGGCG 58.581 55.000 0.00 0.00 0.00 6.13
5121 8457 1.149148 GCGATCCTAATCTTTCGGGC 58.851 55.000 0.00 0.00 32.45 6.13
5122 8458 2.135933 GTGCGATCCTAATCTTTCGGG 58.864 52.381 0.00 0.00 32.45 5.14
5123 8459 1.787155 CGTGCGATCCTAATCTTTCGG 59.213 52.381 0.00 0.00 32.45 4.30
5124 8460 2.721603 CTCGTGCGATCCTAATCTTTCG 59.278 50.000 0.00 0.00 34.83 3.46
5125 8461 3.053455 CCTCGTGCGATCCTAATCTTTC 58.947 50.000 0.00 0.00 0.00 2.62
5126 8462 2.803492 GCCTCGTGCGATCCTAATCTTT 60.803 50.000 0.00 0.00 0.00 2.52
5127 8463 1.269831 GCCTCGTGCGATCCTAATCTT 60.270 52.381 0.00 0.00 0.00 2.40
5128 8464 0.315568 GCCTCGTGCGATCCTAATCT 59.684 55.000 0.00 0.00 0.00 2.40
5129 8465 2.815722 GCCTCGTGCGATCCTAATC 58.184 57.895 0.00 0.00 0.00 1.75
5139 8475 1.284408 CTCCTAGATCGCCTCGTGC 59.716 63.158 0.00 0.00 0.00 5.34
5140 8476 1.953017 CCTCCTAGATCGCCTCGTG 59.047 63.158 0.00 0.00 0.00 4.35
5141 8477 1.899534 GCCTCCTAGATCGCCTCGT 60.900 63.158 0.00 0.00 0.00 4.18
5142 8478 2.958576 GCCTCCTAGATCGCCTCG 59.041 66.667 0.00 0.00 0.00 4.63
5143 8479 1.601197 TCGCCTCCTAGATCGCCTC 60.601 63.158 0.00 0.00 0.00 4.70
5144 8480 1.899534 GTCGCCTCCTAGATCGCCT 60.900 63.158 0.00 0.00 0.00 5.52
5145 8481 2.646143 GTCGCCTCCTAGATCGCC 59.354 66.667 0.00 0.00 0.00 5.54
5146 8482 2.177654 CTCGTCGCCTCCTAGATCGC 62.178 65.000 0.00 0.00 0.00 4.58
5147 8483 1.570347 CCTCGTCGCCTCCTAGATCG 61.570 65.000 0.00 0.00 0.00 3.69
5148 8484 1.238625 CCCTCGTCGCCTCCTAGATC 61.239 65.000 0.00 0.00 0.00 2.75
5149 8485 1.228306 CCCTCGTCGCCTCCTAGAT 60.228 63.158 0.00 0.00 0.00 1.98
5150 8486 2.192443 CCCTCGTCGCCTCCTAGA 59.808 66.667 0.00 0.00 0.00 2.43
5151 8487 1.726533 GAACCCTCGTCGCCTCCTAG 61.727 65.000 0.00 0.00 0.00 3.02
5152 8488 1.751927 GAACCCTCGTCGCCTCCTA 60.752 63.158 0.00 0.00 0.00 2.94
5153 8489 3.069318 GAACCCTCGTCGCCTCCT 61.069 66.667 0.00 0.00 0.00 3.69
5154 8490 4.144703 GGAACCCTCGTCGCCTCC 62.145 72.222 0.00 0.00 0.00 4.30
5197 8533 0.108756 CCGACGGAGAGAAAGGGAAC 60.109 60.000 8.64 0.00 0.00 3.62
5198 8534 1.885163 GCCGACGGAGAGAAAGGGAA 61.885 60.000 20.50 0.00 0.00 3.97
5199 8535 2.348888 GCCGACGGAGAGAAAGGGA 61.349 63.158 20.50 0.00 0.00 4.20
5200 8536 2.184579 GCCGACGGAGAGAAAGGG 59.815 66.667 20.50 0.00 0.00 3.95
5201 8537 2.184579 GGCCGACGGAGAGAAAGG 59.815 66.667 20.50 0.00 0.00 3.11
5202 8538 2.202623 CGGCCGACGGAGAGAAAG 60.203 66.667 24.07 0.00 39.42 2.62
5203 8539 4.430765 GCGGCCGACGGAGAGAAA 62.431 66.667 33.48 0.00 44.51 2.52
5227 8563 4.364686 TTCCCCCTCCCTCCCACC 62.365 72.222 0.00 0.00 0.00 4.61
5228 8564 3.015753 GTTCCCCCTCCCTCCCAC 61.016 72.222 0.00 0.00 0.00 4.61
5229 8565 4.364686 GGTTCCCCCTCCCTCCCA 62.365 72.222 0.00 0.00 0.00 4.37
5230 8566 4.040198 AGGTTCCCCCTCCCTCCC 62.040 72.222 0.00 0.00 40.71 4.30
5238 8574 3.400054 CAGACCCGAGGTTCCCCC 61.400 72.222 0.00 0.00 35.25 5.40
5239 8575 2.181445 GAACAGACCCGAGGTTCCCC 62.181 65.000 0.00 0.00 35.25 4.81
5240 8576 1.295746 GAACAGACCCGAGGTTCCC 59.704 63.158 0.00 0.00 35.25 3.97
5241 8577 1.080025 CGAACAGACCCGAGGTTCC 60.080 63.158 0.00 0.00 38.08 3.62
5242 8578 1.737008 GCGAACAGACCCGAGGTTC 60.737 63.158 0.00 0.00 35.25 3.62
5243 8579 0.896940 TAGCGAACAGACCCGAGGTT 60.897 55.000 0.00 0.00 35.25 3.50
5244 8580 1.303888 TAGCGAACAGACCCGAGGT 60.304 57.895 0.00 0.00 39.44 3.85
5245 8581 1.433879 CTAGCGAACAGACCCGAGG 59.566 63.158 0.00 0.00 0.00 4.63
5246 8582 1.313812 ACCTAGCGAACAGACCCGAG 61.314 60.000 0.00 0.00 0.00 4.63
5247 8583 1.303888 ACCTAGCGAACAGACCCGA 60.304 57.895 0.00 0.00 0.00 5.14
5248 8584 1.153823 CACCTAGCGAACAGACCCG 60.154 63.158 0.00 0.00 0.00 5.28
5249 8585 1.218316 CCACCTAGCGAACAGACCC 59.782 63.158 0.00 0.00 0.00 4.46
5250 8586 1.218316 CCCACCTAGCGAACAGACC 59.782 63.158 0.00 0.00 0.00 3.85
5251 8587 0.389948 CACCCACCTAGCGAACAGAC 60.390 60.000 0.00 0.00 0.00 3.51
5252 8588 0.830444 ACACCCACCTAGCGAACAGA 60.830 55.000 0.00 0.00 0.00 3.41
5253 8589 0.670546 CACACCCACCTAGCGAACAG 60.671 60.000 0.00 0.00 0.00 3.16
5254 8590 1.369692 CACACCCACCTAGCGAACA 59.630 57.895 0.00 0.00 0.00 3.18
5255 8591 0.949105 CACACACCCACCTAGCGAAC 60.949 60.000 0.00 0.00 0.00 3.95
5256 8592 1.369692 CACACACCCACCTAGCGAA 59.630 57.895 0.00 0.00 0.00 4.70
5257 8593 2.579657 CCACACACCCACCTAGCGA 61.580 63.158 0.00 0.00 0.00 4.93
5258 8594 1.537814 TACCACACACCCACCTAGCG 61.538 60.000 0.00 0.00 0.00 4.26
5259 8595 0.249398 CTACCACACACCCACCTAGC 59.751 60.000 0.00 0.00 0.00 3.42
5260 8596 0.902531 CCTACCACACACCCACCTAG 59.097 60.000 0.00 0.00 0.00 3.02
5261 8597 0.488220 TCCTACCACACACCCACCTA 59.512 55.000 0.00 0.00 0.00 3.08
5262 8598 0.178873 ATCCTACCACACACCCACCT 60.179 55.000 0.00 0.00 0.00 4.00
5263 8599 0.696501 AATCCTACCACACACCCACC 59.303 55.000 0.00 0.00 0.00 4.61
5264 8600 2.093128 CCTAATCCTACCACACACCCAC 60.093 54.545 0.00 0.00 0.00 4.61
5265 8601 2.193127 CCTAATCCTACCACACACCCA 58.807 52.381 0.00 0.00 0.00 4.51
5266 8602 1.489230 CCCTAATCCTACCACACACCC 59.511 57.143 0.00 0.00 0.00 4.61
5267 8603 2.193993 ACCCTAATCCTACCACACACC 58.806 52.381 0.00 0.00 0.00 4.16
5268 8604 3.262405 TCAACCCTAATCCTACCACACAC 59.738 47.826 0.00 0.00 0.00 3.82
5269 8605 3.517901 CTCAACCCTAATCCTACCACACA 59.482 47.826 0.00 0.00 0.00 3.72
5270 8606 3.118371 CCTCAACCCTAATCCTACCACAC 60.118 52.174 0.00 0.00 0.00 3.82
5271 8607 3.112263 CCTCAACCCTAATCCTACCACA 58.888 50.000 0.00 0.00 0.00 4.17
5272 8608 2.438392 CCCTCAACCCTAATCCTACCAC 59.562 54.545 0.00 0.00 0.00 4.16
5273 8609 2.319747 TCCCTCAACCCTAATCCTACCA 59.680 50.000 0.00 0.00 0.00 3.25
5274 8610 2.973406 CTCCCTCAACCCTAATCCTACC 59.027 54.545 0.00 0.00 0.00 3.18
5275 8611 3.642377 GTCTCCCTCAACCCTAATCCTAC 59.358 52.174 0.00 0.00 0.00 3.18
5276 8612 3.690438 CGTCTCCCTCAACCCTAATCCTA 60.690 52.174 0.00 0.00 0.00 2.94
5277 8613 2.765502 GTCTCCCTCAACCCTAATCCT 58.234 52.381 0.00 0.00 0.00 3.24
5278 8614 1.413077 CGTCTCCCTCAACCCTAATCC 59.587 57.143 0.00 0.00 0.00 3.01
5279 8615 1.202545 GCGTCTCCCTCAACCCTAATC 60.203 57.143 0.00 0.00 0.00 1.75
5280 8616 0.831307 GCGTCTCCCTCAACCCTAAT 59.169 55.000 0.00 0.00 0.00 1.73
5281 8617 0.252103 AGCGTCTCCCTCAACCCTAA 60.252 55.000 0.00 0.00 0.00 2.69
5282 8618 0.970937 CAGCGTCTCCCTCAACCCTA 60.971 60.000 0.00 0.00 0.00 3.53
5283 8619 2.120718 AGCGTCTCCCTCAACCCT 59.879 61.111 0.00 0.00 0.00 4.34
5284 8620 2.266055 CAGCGTCTCCCTCAACCC 59.734 66.667 0.00 0.00 0.00 4.11
5285 8621 2.435059 GCAGCGTCTCCCTCAACC 60.435 66.667 0.00 0.00 0.00 3.77
5286 8622 2.435059 GGCAGCGTCTCCCTCAAC 60.435 66.667 0.00 0.00 0.00 3.18
5287 8623 4.069232 CGGCAGCGTCTCCCTCAA 62.069 66.667 0.00 0.00 0.00 3.02
5289 8625 4.200283 CTCGGCAGCGTCTCCCTC 62.200 72.222 0.00 0.00 0.00 4.30
5309 8645 3.995669 CGTGACACCACCGCAACG 61.996 66.667 0.00 0.00 40.12 4.10
5310 8646 2.877974 GACGTGACACCACCGCAAC 61.878 63.158 0.00 0.00 40.12 4.17
5311 8647 2.586635 GACGTGACACCACCGCAA 60.587 61.111 0.00 0.00 40.12 4.85
5312 8648 3.783478 CTGACGTGACACCACCGCA 62.783 63.158 0.00 0.00 40.12 5.69
5313 8649 2.964438 TTCTGACGTGACACCACCGC 62.964 60.000 0.00 0.00 40.12 5.68
5314 8650 0.319555 ATTCTGACGTGACACCACCG 60.320 55.000 0.00 0.00 40.12 4.94
5315 8651 2.736144 TATTCTGACGTGACACCACC 57.264 50.000 0.00 0.00 40.12 4.61
5316 8652 3.650139 ACTTATTCTGACGTGACACCAC 58.350 45.455 0.00 0.00 39.86 4.16
5317 8653 4.330944 AACTTATTCTGACGTGACACCA 57.669 40.909 0.00 0.00 0.00 4.17
5318 8654 4.989168 AGAAACTTATTCTGACGTGACACC 59.011 41.667 0.00 0.00 0.00 4.16
5319 8655 5.118817 GGAGAAACTTATTCTGACGTGACAC 59.881 44.000 0.00 0.00 0.00 3.67
5320 8656 5.227908 GGAGAAACTTATTCTGACGTGACA 58.772 41.667 0.00 0.00 0.00 3.58
5321 8657 4.323868 CGGAGAAACTTATTCTGACGTGAC 59.676 45.833 0.00 0.00 0.00 3.67
5322 8658 4.482386 CGGAGAAACTTATTCTGACGTGA 58.518 43.478 0.00 0.00 0.00 4.35
5323 8659 4.824848 CGGAGAAACTTATTCTGACGTG 57.175 45.455 0.00 0.00 0.00 4.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.