Multiple sequence alignment - TraesCS3D01G330200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G330200 chr3D 100.000 3068 0 0 1 3068 442809749 442806682 0.000000e+00 5666.0
1 TraesCS3D01G330200 chr3B 89.226 2803 171 46 302 3058 580353708 580350991 0.000000e+00 3382.0
2 TraesCS3D01G330200 chr3B 87.671 73 4 5 261 333 607045093 607045160 2.540000e-11 80.5
3 TraesCS3D01G330200 chr3B 94.118 51 2 1 261 311 739040749 739040798 3.280000e-10 76.8
4 TraesCS3D01G330200 chr3B 92.453 53 2 2 261 313 4714749 4714799 1.180000e-09 75.0
5 TraesCS3D01G330200 chr3A 91.107 2485 119 42 638 3063 584011512 584009071 0.000000e+00 3271.0
6 TraesCS3D01G330200 chr3A 92.664 259 19 0 1 259 456714421 456714163 1.040000e-99 374.0
7 TraesCS3D01G330200 chr3A 92.278 259 20 0 1 259 456705364 456705106 4.830000e-98 368.0
8 TraesCS3D01G330200 chr3A 94.231 52 2 1 259 309 539201363 539201414 9.120000e-11 78.7
9 TraesCS3D01G330200 chr3A 90.909 55 5 0 261 315 428568294 428568348 1.180000e-09 75.0
10 TraesCS3D01G330200 chr5B 94.636 261 14 0 1 261 643787120 643787380 3.680000e-109 405.0
11 TraesCS3D01G330200 chr5B 93.436 259 17 0 1 259 643685270 643685528 4.800000e-103 385.0
12 TraesCS3D01G330200 chr7D 93.822 259 16 0 1 259 59694097 59694355 1.030000e-104 390.0
13 TraesCS3D01G330200 chr2A 93.462 260 16 1 1 259 760103156 760103415 4.800000e-103 385.0
14 TraesCS3D01G330200 chr1D 93.050 259 18 0 1 259 284052965 284052707 2.230000e-101 379.0
15 TraesCS3D01G330200 chr4B 92.278 259 20 0 1 259 279004513 279004255 4.830000e-98 368.0
16 TraesCS3D01G330200 chr4B 87.719 57 4 3 320 375 661641048 661640994 2.550000e-06 63.9
17 TraesCS3D01G330200 chr2D 91.954 261 19 1 1 259 332720127 332720387 6.250000e-97 364.0
18 TraesCS3D01G330200 chr6B 90.909 77 5 2 302 377 523208361 523208436 5.410000e-18 102.0
19 TraesCS3D01G330200 chr6D 86.420 81 8 3 302 381 90134963 90134885 5.450000e-13 86.1
20 TraesCS3D01G330200 chr6A 85.185 81 9 3 302 381 108924121 108924199 2.540000e-11 80.5
21 TraesCS3D01G330200 chr2B 86.667 75 7 3 302 375 799704751 799704679 2.540000e-11 80.5
22 TraesCS3D01G330200 chr2B 85.714 77 7 4 308 382 449505298 449505372 9.120000e-11 78.7
23 TraesCS3D01G330200 chr2B 95.556 45 2 0 261 305 2514034 2514078 4.240000e-09 73.1
24 TraesCS3D01G330200 chr2B 92.308 52 3 1 261 312 785156551 785156501 4.240000e-09 73.1
25 TraesCS3D01G330200 chr4A 94.231 52 2 1 261 312 459629352 459629402 9.120000e-11 78.7
26 TraesCS3D01G330200 chr7B 95.745 47 2 0 259 305 72768274 72768228 3.280000e-10 76.8
27 TraesCS3D01G330200 chr7B 85.526 76 8 3 302 375 703492767 703492693 3.280000e-10 76.8
28 TraesCS3D01G330200 chr1B 85.294 68 8 2 309 375 550270672 550270606 5.490000e-08 69.4
29 TraesCS3D01G330200 chr1B 87.037 54 7 0 480 533 621258089 621258142 9.190000e-06 62.1
30 TraesCS3D01G330200 chr4D 84.127 63 10 0 474 536 274541634 274541696 9.190000e-06 62.1
31 TraesCS3D01G330200 chr5D 88.000 50 5 1 492 541 545257010 545257058 1.190000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G330200 chr3D 442806682 442809749 3067 True 5666 5666 100.000 1 3068 1 chr3D.!!$R1 3067
1 TraesCS3D01G330200 chr3B 580350991 580353708 2717 True 3382 3382 89.226 302 3058 1 chr3B.!!$R1 2756
2 TraesCS3D01G330200 chr3A 584009071 584011512 2441 True 3271 3271 91.107 638 3063 1 chr3A.!!$R3 2425

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
69 70 0.026803 GTCTTGAATGCGTGATCGGC 59.973 55.0 1.85 1.85 37.56 5.54 F
283 284 0.029834 GAAACCGAGGACGCGCTATA 59.970 55.0 5.73 0.00 38.29 1.31 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1692 1751 0.598680 CGATGAGCCCGTTGGAGATC 60.599 60.0 0.00 0.0 0.00 2.75 R
2134 2194 1.108727 TGGCCTGTGTCCAAGCAAAG 61.109 55.0 3.32 0.0 29.11 2.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.835199 CCTCGACGAAACGAATACAATT 57.165 40.909 0.00 0.00 41.67 2.32
22 23 5.199424 CCTCGACGAAACGAATACAATTT 57.801 39.130 0.00 0.00 41.67 1.82
23 24 5.245850 CCTCGACGAAACGAATACAATTTC 58.754 41.667 0.00 0.00 41.67 2.17
24 25 5.061808 CCTCGACGAAACGAATACAATTTCT 59.938 40.000 0.00 0.00 41.67 2.52
25 26 6.400727 CCTCGACGAAACGAATACAATTTCTT 60.401 38.462 0.00 0.00 41.67 2.52
26 27 6.879962 TCGACGAAACGAATACAATTTCTTT 58.120 32.000 0.00 0.00 39.34 2.52
27 28 8.005662 TCGACGAAACGAATACAATTTCTTTA 57.994 30.769 0.00 0.00 39.34 1.85
28 29 8.157813 TCGACGAAACGAATACAATTTCTTTAG 58.842 33.333 0.00 0.00 39.34 1.85
29 30 8.157813 CGACGAAACGAATACAATTTCTTTAGA 58.842 33.333 0.00 0.00 35.09 2.10
30 31 9.461760 GACGAAACGAATACAATTTCTTTAGAG 57.538 33.333 0.00 0.00 31.47 2.43
31 32 8.985805 ACGAAACGAATACAATTTCTTTAGAGT 58.014 29.630 0.00 0.00 31.47 3.24
32 33 9.250986 CGAAACGAATACAATTTCTTTAGAGTG 57.749 33.333 0.00 0.00 31.47 3.51
33 34 8.950403 AAACGAATACAATTTCTTTAGAGTGC 57.050 30.769 0.00 0.00 0.00 4.40
34 35 7.907214 ACGAATACAATTTCTTTAGAGTGCT 57.093 32.000 0.00 0.00 0.00 4.40
35 36 8.324163 ACGAATACAATTTCTTTAGAGTGCTT 57.676 30.769 0.00 0.00 0.00 3.91
36 37 8.443937 ACGAATACAATTTCTTTAGAGTGCTTC 58.556 33.333 0.00 0.00 0.00 3.86
37 38 8.660373 CGAATACAATTTCTTTAGAGTGCTTCT 58.340 33.333 0.00 0.00 40.06 2.85
40 41 7.807977 ACAATTTCTTTAGAGTGCTTCTTCA 57.192 32.000 0.00 0.00 37.36 3.02
41 42 8.401490 ACAATTTCTTTAGAGTGCTTCTTCAT 57.599 30.769 0.00 0.00 37.36 2.57
42 43 8.510505 ACAATTTCTTTAGAGTGCTTCTTCATC 58.489 33.333 0.00 0.00 37.36 2.92
43 44 7.622893 ATTTCTTTAGAGTGCTTCTTCATCC 57.377 36.000 0.00 0.00 37.36 3.51
44 45 5.745312 TCTTTAGAGTGCTTCTTCATCCA 57.255 39.130 0.00 0.00 37.36 3.41
45 46 6.114187 TCTTTAGAGTGCTTCTTCATCCAA 57.886 37.500 0.00 0.00 37.36 3.53
46 47 6.169094 TCTTTAGAGTGCTTCTTCATCCAAG 58.831 40.000 0.00 0.00 37.36 3.61
47 48 3.347077 AGAGTGCTTCTTCATCCAAGG 57.653 47.619 0.00 0.00 29.61 3.61
48 49 2.641815 AGAGTGCTTCTTCATCCAAGGT 59.358 45.455 0.00 0.00 29.61 3.50
49 50 3.840666 AGAGTGCTTCTTCATCCAAGGTA 59.159 43.478 0.00 0.00 29.61 3.08
50 51 4.081198 AGAGTGCTTCTTCATCCAAGGTAG 60.081 45.833 0.00 0.00 29.61 3.18
51 52 3.584848 AGTGCTTCTTCATCCAAGGTAGT 59.415 43.478 0.00 0.00 32.22 2.73
52 53 3.935828 GTGCTTCTTCATCCAAGGTAGTC 59.064 47.826 0.00 0.00 32.22 2.59
53 54 3.840666 TGCTTCTTCATCCAAGGTAGTCT 59.159 43.478 0.00 0.00 32.22 3.24
54 55 4.287067 TGCTTCTTCATCCAAGGTAGTCTT 59.713 41.667 0.00 0.00 35.79 3.01
64 65 3.678056 AAGGTAGTCTTGAATGCGTGA 57.322 42.857 0.00 0.00 33.76 4.35
65 66 3.895232 AGGTAGTCTTGAATGCGTGAT 57.105 42.857 0.00 0.00 0.00 3.06
66 67 3.786635 AGGTAGTCTTGAATGCGTGATC 58.213 45.455 0.00 0.00 0.00 2.92
67 68 2.535984 GGTAGTCTTGAATGCGTGATCG 59.464 50.000 0.00 0.00 40.37 3.69
68 69 1.645034 AGTCTTGAATGCGTGATCGG 58.355 50.000 0.00 0.00 37.56 4.18
69 70 0.026803 GTCTTGAATGCGTGATCGGC 59.973 55.000 1.85 1.85 37.56 5.54
70 71 1.089481 TCTTGAATGCGTGATCGGCC 61.089 55.000 6.16 0.00 37.56 6.13
71 72 2.365444 CTTGAATGCGTGATCGGCCG 62.365 60.000 22.12 22.12 37.56 6.13
72 73 2.584970 GAATGCGTGATCGGCCGA 60.585 61.111 33.12 33.12 37.56 5.54
73 74 2.125310 AATGCGTGATCGGCCGAA 60.125 55.556 34.66 14.93 37.56 4.30
74 75 1.701545 GAATGCGTGATCGGCCGAAA 61.702 55.000 34.66 21.24 37.56 3.46
75 76 1.302383 AATGCGTGATCGGCCGAAAA 61.302 50.000 34.66 20.83 37.56 2.29
76 77 1.977594 ATGCGTGATCGGCCGAAAAC 61.978 55.000 34.66 29.25 37.56 2.43
77 78 2.782615 CGTGATCGGCCGAAAACC 59.217 61.111 34.66 20.95 0.00 3.27
78 79 2.030401 CGTGATCGGCCGAAAACCA 61.030 57.895 34.66 23.26 0.00 3.67
79 80 1.500396 GTGATCGGCCGAAAACCAC 59.500 57.895 34.66 29.07 0.00 4.16
80 81 0.953960 GTGATCGGCCGAAAACCACT 60.954 55.000 34.66 14.44 0.00 4.00
81 82 0.250553 TGATCGGCCGAAAACCACTT 60.251 50.000 34.66 13.53 0.00 3.16
82 83 0.168128 GATCGGCCGAAAACCACTTG 59.832 55.000 34.66 0.00 0.00 3.16
83 84 1.241315 ATCGGCCGAAAACCACTTGG 61.241 55.000 34.66 0.00 42.17 3.61
84 85 1.894756 CGGCCGAAAACCACTTGGA 60.895 57.895 24.07 0.00 38.94 3.53
85 86 1.448922 CGGCCGAAAACCACTTGGAA 61.449 55.000 24.07 0.00 38.94 3.53
86 87 0.031585 GGCCGAAAACCACTTGGAAC 59.968 55.000 1.14 0.00 38.94 3.62
87 88 0.741915 GCCGAAAACCACTTGGAACA 59.258 50.000 1.14 0.00 38.94 3.18
88 89 1.339929 GCCGAAAACCACTTGGAACAT 59.660 47.619 1.14 0.00 39.30 2.71
89 90 2.223947 GCCGAAAACCACTTGGAACATT 60.224 45.455 1.14 0.00 39.30 2.71
90 91 3.380142 CCGAAAACCACTTGGAACATTG 58.620 45.455 1.14 0.00 39.30 2.82
91 92 3.067461 CCGAAAACCACTTGGAACATTGA 59.933 43.478 1.14 0.00 39.30 2.57
92 93 4.440802 CCGAAAACCACTTGGAACATTGAA 60.441 41.667 1.14 0.00 39.30 2.69
93 94 5.288804 CGAAAACCACTTGGAACATTGAAT 58.711 37.500 1.14 0.00 39.30 2.57
94 95 5.752955 CGAAAACCACTTGGAACATTGAATT 59.247 36.000 1.14 0.00 39.30 2.17
95 96 6.074356 CGAAAACCACTTGGAACATTGAATTC 60.074 38.462 1.14 0.00 39.30 2.17
96 97 6.484364 AAACCACTTGGAACATTGAATTCT 57.516 33.333 7.05 0.00 39.30 2.40
97 98 5.458041 ACCACTTGGAACATTGAATTCTG 57.542 39.130 7.05 0.00 39.30 3.02
98 99 4.240096 CCACTTGGAACATTGAATTCTGC 58.760 43.478 7.05 0.00 39.30 4.26
99 100 4.240096 CACTTGGAACATTGAATTCTGCC 58.760 43.478 7.05 0.00 39.30 4.85
100 101 3.896888 ACTTGGAACATTGAATTCTGCCA 59.103 39.130 7.05 0.00 39.30 4.92
101 102 3.940209 TGGAACATTGAATTCTGCCAC 57.060 42.857 7.05 0.00 0.00 5.01
102 103 3.499338 TGGAACATTGAATTCTGCCACT 58.501 40.909 7.05 0.00 0.00 4.00
103 104 3.507233 TGGAACATTGAATTCTGCCACTC 59.493 43.478 7.05 0.00 0.00 3.51
104 105 3.426695 GGAACATTGAATTCTGCCACTCG 60.427 47.826 7.05 0.00 0.00 4.18
105 106 2.086869 ACATTGAATTCTGCCACTCGG 58.913 47.619 7.05 0.00 0.00 4.63
106 107 2.290260 ACATTGAATTCTGCCACTCGGA 60.290 45.455 7.05 0.00 0.00 4.55
107 108 2.099141 TTGAATTCTGCCACTCGGAG 57.901 50.000 7.05 2.83 0.00 4.63
108 109 0.976641 TGAATTCTGCCACTCGGAGT 59.023 50.000 4.45 4.45 0.00 3.85
109 110 2.176045 TGAATTCTGCCACTCGGAGTA 58.824 47.619 10.87 0.00 0.00 2.59
110 111 2.766263 TGAATTCTGCCACTCGGAGTAT 59.234 45.455 10.87 0.00 0.00 2.12
111 112 3.958147 TGAATTCTGCCACTCGGAGTATA 59.042 43.478 10.87 0.00 0.00 1.47
112 113 4.404394 TGAATTCTGCCACTCGGAGTATAA 59.596 41.667 10.87 1.82 0.00 0.98
113 114 5.070446 TGAATTCTGCCACTCGGAGTATAAT 59.930 40.000 10.87 3.99 0.00 1.28
114 115 5.552870 ATTCTGCCACTCGGAGTATAATT 57.447 39.130 10.87 0.00 0.00 1.40
115 116 5.353394 TTCTGCCACTCGGAGTATAATTT 57.647 39.130 10.87 0.00 0.00 1.82
116 117 4.945246 TCTGCCACTCGGAGTATAATTTC 58.055 43.478 10.87 0.00 0.00 2.17
117 118 3.713288 TGCCACTCGGAGTATAATTTCG 58.287 45.455 10.87 0.00 0.00 3.46
118 119 3.382227 TGCCACTCGGAGTATAATTTCGA 59.618 43.478 10.87 0.00 0.00 3.71
119 120 4.038763 TGCCACTCGGAGTATAATTTCGAT 59.961 41.667 10.87 0.00 0.00 3.59
120 121 4.621886 GCCACTCGGAGTATAATTTCGATC 59.378 45.833 10.87 0.00 0.00 3.69
121 122 5.162075 CCACTCGGAGTATAATTTCGATCC 58.838 45.833 10.87 0.00 0.00 3.36
122 123 5.162075 CACTCGGAGTATAATTTCGATCCC 58.838 45.833 10.87 0.00 0.00 3.85
123 124 5.047943 CACTCGGAGTATAATTTCGATCCCT 60.048 44.000 10.87 0.00 0.00 4.20
124 125 6.150641 CACTCGGAGTATAATTTCGATCCCTA 59.849 42.308 10.87 0.00 0.00 3.53
125 126 6.718454 ACTCGGAGTATAATTTCGATCCCTAA 59.282 38.462 9.33 0.00 0.00 2.69
126 127 7.094291 ACTCGGAGTATAATTTCGATCCCTAAG 60.094 40.741 9.33 0.00 0.00 2.18
127 128 6.944290 TCGGAGTATAATTTCGATCCCTAAGA 59.056 38.462 0.00 0.00 0.00 2.10
128 129 7.614583 TCGGAGTATAATTTCGATCCCTAAGAT 59.385 37.037 0.00 0.00 38.17 2.40
129 130 7.702772 CGGAGTATAATTTCGATCCCTAAGATG 59.297 40.741 0.00 0.00 34.42 2.90
130 131 7.982354 GGAGTATAATTTCGATCCCTAAGATGG 59.018 40.741 0.00 0.00 34.42 3.51
139 140 2.550830 CCCTAAGATGGGTTCGGATG 57.449 55.000 0.00 0.00 42.25 3.51
140 141 2.047061 CCCTAAGATGGGTTCGGATGA 58.953 52.381 0.00 0.00 42.25 2.92
141 142 2.639839 CCCTAAGATGGGTTCGGATGAT 59.360 50.000 0.00 0.00 42.25 2.45
142 143 3.557898 CCCTAAGATGGGTTCGGATGATG 60.558 52.174 0.00 0.00 42.25 3.07
143 144 3.324846 CCTAAGATGGGTTCGGATGATGA 59.675 47.826 0.00 0.00 0.00 2.92
144 145 4.019860 CCTAAGATGGGTTCGGATGATGAT 60.020 45.833 0.00 0.00 0.00 2.45
145 146 5.187772 CCTAAGATGGGTTCGGATGATGATA 59.812 44.000 0.00 0.00 0.00 2.15
146 147 5.567037 AAGATGGGTTCGGATGATGATAA 57.433 39.130 0.00 0.00 0.00 1.75
147 148 4.899502 AGATGGGTTCGGATGATGATAAC 58.100 43.478 0.00 0.00 0.00 1.89
148 149 4.594920 AGATGGGTTCGGATGATGATAACT 59.405 41.667 0.00 0.00 0.00 2.24
149 150 4.771114 TGGGTTCGGATGATGATAACTT 57.229 40.909 0.00 0.00 0.00 2.66
150 151 5.880164 TGGGTTCGGATGATGATAACTTA 57.120 39.130 0.00 0.00 0.00 2.24
151 152 6.241882 TGGGTTCGGATGATGATAACTTAA 57.758 37.500 0.00 0.00 0.00 1.85
152 153 6.654959 TGGGTTCGGATGATGATAACTTAAA 58.345 36.000 0.00 0.00 0.00 1.52
153 154 6.540914 TGGGTTCGGATGATGATAACTTAAAC 59.459 38.462 0.00 0.00 0.00 2.01
154 155 6.540914 GGGTTCGGATGATGATAACTTAAACA 59.459 38.462 0.00 0.00 0.00 2.83
155 156 7.228706 GGGTTCGGATGATGATAACTTAAACAT 59.771 37.037 0.00 0.00 0.00 2.71
156 157 8.283291 GGTTCGGATGATGATAACTTAAACATC 58.717 37.037 0.00 0.00 39.35 3.06
167 168 9.959749 TGATAACTTAAACATCAAAGTTGTTCC 57.040 29.630 9.98 0.00 43.77 3.62
168 169 9.959749 GATAACTTAAACATCAAAGTTGTTCCA 57.040 29.630 9.98 0.00 43.77 3.53
171 172 8.871686 ACTTAAACATCAAAGTTGTTCCATTC 57.128 30.769 0.00 0.00 36.32 2.67
172 173 7.647715 ACTTAAACATCAAAGTTGTTCCATTCG 59.352 33.333 0.00 0.00 36.32 3.34
173 174 4.503741 ACATCAAAGTTGTTCCATTCGG 57.496 40.909 0.00 0.00 0.00 4.30
174 175 3.244976 CATCAAAGTTGTTCCATTCGGC 58.755 45.455 0.00 0.00 0.00 5.54
175 176 1.265635 TCAAAGTTGTTCCATTCGGCG 59.734 47.619 0.00 0.00 0.00 6.46
176 177 1.265635 CAAAGTTGTTCCATTCGGCGA 59.734 47.619 4.99 4.99 0.00 5.54
177 178 1.821216 AAGTTGTTCCATTCGGCGAT 58.179 45.000 11.76 0.00 0.00 4.58
178 179 1.086696 AGTTGTTCCATTCGGCGATG 58.913 50.000 11.76 11.21 0.00 3.84
179 180 0.802494 GTTGTTCCATTCGGCGATGT 59.198 50.000 11.76 0.00 0.00 3.06
180 181 0.801872 TTGTTCCATTCGGCGATGTG 59.198 50.000 11.76 13.04 0.00 3.21
181 182 0.036858 TGTTCCATTCGGCGATGTGA 60.037 50.000 11.76 4.40 0.00 3.58
182 183 1.083489 GTTCCATTCGGCGATGTGAA 58.917 50.000 11.76 10.78 0.00 3.18
183 184 1.466950 GTTCCATTCGGCGATGTGAAA 59.533 47.619 11.76 0.00 0.00 2.69
184 185 1.083489 TCCATTCGGCGATGTGAAAC 58.917 50.000 11.76 0.00 37.35 2.78
185 186 1.086696 CCATTCGGCGATGTGAAACT 58.913 50.000 11.76 0.00 38.04 2.66
186 187 1.468520 CCATTCGGCGATGTGAAACTT 59.531 47.619 11.76 0.00 38.04 2.66
187 188 2.095263 CCATTCGGCGATGTGAAACTTT 60.095 45.455 11.76 0.00 38.04 2.66
188 189 2.961522 TTCGGCGATGTGAAACTTTC 57.038 45.000 11.76 0.00 38.04 2.62
189 190 1.153353 TCGGCGATGTGAAACTTTCC 58.847 50.000 4.99 0.00 38.04 3.13
190 191 0.871722 CGGCGATGTGAAACTTTCCA 59.128 50.000 0.00 0.00 38.04 3.53
191 192 1.468520 CGGCGATGTGAAACTTTCCAT 59.531 47.619 0.00 2.86 38.04 3.41
192 193 2.728846 CGGCGATGTGAAACTTTCCATG 60.729 50.000 0.00 0.00 38.04 3.66
193 194 2.253603 GCGATGTGAAACTTTCCATGC 58.746 47.619 9.11 9.14 38.04 4.06
194 195 2.095059 GCGATGTGAAACTTTCCATGCT 60.095 45.455 9.11 0.00 38.04 3.79
195 196 3.495193 CGATGTGAAACTTTCCATGCTG 58.505 45.455 9.11 0.00 38.04 4.41
196 197 3.189080 CGATGTGAAACTTTCCATGCTGA 59.811 43.478 9.11 0.00 38.04 4.26
197 198 4.320421 CGATGTGAAACTTTCCATGCTGAA 60.320 41.667 9.11 0.00 38.04 3.02
198 199 4.998671 TGTGAAACTTTCCATGCTGAAA 57.001 36.364 0.00 0.00 38.04 2.69
199 200 5.336150 TGTGAAACTTTCCATGCTGAAAA 57.664 34.783 0.00 0.00 38.04 2.29
200 201 5.108517 TGTGAAACTTTCCATGCTGAAAAC 58.891 37.500 0.00 0.00 38.04 2.43
201 202 4.507756 GTGAAACTTTCCATGCTGAAAACC 59.492 41.667 0.00 0.00 34.06 3.27
202 203 3.751479 AACTTTCCATGCTGAAAACCC 57.249 42.857 0.00 0.00 34.06 4.11
203 204 2.962859 ACTTTCCATGCTGAAAACCCT 58.037 42.857 0.00 0.00 34.06 4.34
204 205 3.308401 ACTTTCCATGCTGAAAACCCTT 58.692 40.909 0.00 0.00 34.06 3.95
205 206 3.711190 ACTTTCCATGCTGAAAACCCTTT 59.289 39.130 0.00 0.00 34.06 3.11
206 207 4.202253 ACTTTCCATGCTGAAAACCCTTTC 60.202 41.667 0.00 0.00 41.25 2.62
207 208 2.956132 TCCATGCTGAAAACCCTTTCA 58.044 42.857 0.77 0.77 46.88 2.69
208 209 2.627699 TCCATGCTGAAAACCCTTTCAC 59.372 45.455 0.00 0.00 44.76 3.18
209 210 2.289010 CCATGCTGAAAACCCTTTCACC 60.289 50.000 0.00 0.00 44.76 4.02
210 211 1.408969 TGCTGAAAACCCTTTCACCC 58.591 50.000 0.00 0.00 44.76 4.61
211 212 0.313987 GCTGAAAACCCTTTCACCCG 59.686 55.000 0.00 0.00 44.76 5.28
212 213 1.975660 CTGAAAACCCTTTCACCCGA 58.024 50.000 0.00 0.00 44.76 5.14
213 214 2.303175 CTGAAAACCCTTTCACCCGAA 58.697 47.619 0.00 0.00 44.76 4.30
214 215 2.293399 CTGAAAACCCTTTCACCCGAAG 59.707 50.000 0.00 0.00 44.76 3.79
215 216 1.000607 GAAAACCCTTTCACCCGAAGC 60.001 52.381 0.00 0.00 40.67 3.86
216 217 0.826256 AAACCCTTTCACCCGAAGCC 60.826 55.000 0.00 0.00 31.28 4.35
217 218 2.002018 AACCCTTTCACCCGAAGCCA 62.002 55.000 0.00 0.00 31.28 4.75
218 219 1.000896 CCCTTTCACCCGAAGCCAT 60.001 57.895 0.00 0.00 31.28 4.40
219 220 1.032114 CCCTTTCACCCGAAGCCATC 61.032 60.000 0.00 0.00 31.28 3.51
220 221 0.035056 CCTTTCACCCGAAGCCATCT 60.035 55.000 0.00 0.00 31.28 2.90
221 222 1.373570 CTTTCACCCGAAGCCATCTC 58.626 55.000 0.00 0.00 31.28 2.75
222 223 0.690192 TTTCACCCGAAGCCATCTCA 59.310 50.000 0.00 0.00 31.28 3.27
223 224 0.911769 TTCACCCGAAGCCATCTCAT 59.088 50.000 0.00 0.00 0.00 2.90
224 225 0.911769 TCACCCGAAGCCATCTCATT 59.088 50.000 0.00 0.00 0.00 2.57
225 226 1.281867 TCACCCGAAGCCATCTCATTT 59.718 47.619 0.00 0.00 0.00 2.32
226 227 2.094675 CACCCGAAGCCATCTCATTTT 58.905 47.619 0.00 0.00 0.00 1.82
227 228 2.098117 CACCCGAAGCCATCTCATTTTC 59.902 50.000 0.00 0.00 0.00 2.29
228 229 2.025887 ACCCGAAGCCATCTCATTTTCT 60.026 45.455 0.00 0.00 0.00 2.52
229 230 3.019564 CCCGAAGCCATCTCATTTTCTT 58.980 45.455 0.00 0.00 0.00 2.52
230 231 3.445096 CCCGAAGCCATCTCATTTTCTTT 59.555 43.478 0.00 0.00 0.00 2.52
231 232 4.082026 CCCGAAGCCATCTCATTTTCTTTT 60.082 41.667 0.00 0.00 0.00 2.27
232 233 5.125417 CCCGAAGCCATCTCATTTTCTTTTA 59.875 40.000 0.00 0.00 0.00 1.52
233 234 6.183360 CCCGAAGCCATCTCATTTTCTTTTAT 60.183 38.462 0.00 0.00 0.00 1.40
234 235 6.694411 CCGAAGCCATCTCATTTTCTTTTATG 59.306 38.462 0.00 0.00 0.00 1.90
235 236 6.197842 CGAAGCCATCTCATTTTCTTTTATGC 59.802 38.462 0.00 0.00 0.00 3.14
236 237 5.910614 AGCCATCTCATTTTCTTTTATGCC 58.089 37.500 0.00 0.00 0.00 4.40
237 238 5.422970 AGCCATCTCATTTTCTTTTATGCCA 59.577 36.000 0.00 0.00 0.00 4.92
238 239 6.099269 AGCCATCTCATTTTCTTTTATGCCAT 59.901 34.615 0.00 0.00 0.00 4.40
239 240 6.202188 GCCATCTCATTTTCTTTTATGCCATG 59.798 38.462 0.00 0.00 0.00 3.66
240 241 6.202188 CCATCTCATTTTCTTTTATGCCATGC 59.798 38.462 0.00 0.00 0.00 4.06
241 242 5.663456 TCTCATTTTCTTTTATGCCATGCC 58.337 37.500 0.00 0.00 0.00 4.40
242 243 5.187381 TCTCATTTTCTTTTATGCCATGCCA 59.813 36.000 0.00 0.00 0.00 4.92
243 244 5.802465 TCATTTTCTTTTATGCCATGCCAA 58.198 33.333 0.00 0.00 0.00 4.52
244 245 6.236409 TCATTTTCTTTTATGCCATGCCAAA 58.764 32.000 0.00 0.00 0.00 3.28
245 246 6.713903 TCATTTTCTTTTATGCCATGCCAAAA 59.286 30.769 0.00 0.00 0.00 2.44
246 247 7.393796 TCATTTTCTTTTATGCCATGCCAAAAT 59.606 29.630 0.00 0.00 0.00 1.82
247 248 6.740411 TTTCTTTTATGCCATGCCAAAATC 57.260 33.333 0.00 0.00 0.00 2.17
248 249 5.680594 TCTTTTATGCCATGCCAAAATCT 57.319 34.783 0.00 0.00 0.00 2.40
249 250 5.421277 TCTTTTATGCCATGCCAAAATCTG 58.579 37.500 0.00 0.00 0.00 2.90
250 251 5.187381 TCTTTTATGCCATGCCAAAATCTGA 59.813 36.000 0.00 0.00 0.00 3.27
251 252 5.617528 TTTATGCCATGCCAAAATCTGAT 57.382 34.783 0.00 0.00 0.00 2.90
252 253 2.971660 TGCCATGCCAAAATCTGATG 57.028 45.000 0.00 0.00 0.00 3.07
253 254 2.181125 TGCCATGCCAAAATCTGATGT 58.819 42.857 0.00 0.00 0.00 3.06
254 255 2.166870 TGCCATGCCAAAATCTGATGTC 59.833 45.455 0.00 0.00 0.00 3.06
255 256 2.166870 GCCATGCCAAAATCTGATGTCA 59.833 45.455 0.00 0.00 0.00 3.58
256 257 3.368635 GCCATGCCAAAATCTGATGTCAA 60.369 43.478 0.00 0.00 0.00 3.18
257 258 4.178540 CCATGCCAAAATCTGATGTCAAC 58.821 43.478 0.00 0.00 0.00 3.18
258 259 4.322123 CCATGCCAAAATCTGATGTCAACA 60.322 41.667 0.00 0.00 0.00 3.33
259 260 4.933505 TGCCAAAATCTGATGTCAACAA 57.066 36.364 0.00 0.00 0.00 2.83
260 261 4.619973 TGCCAAAATCTGATGTCAACAAC 58.380 39.130 0.00 0.00 0.00 3.32
261 262 4.099113 TGCCAAAATCTGATGTCAACAACA 59.901 37.500 0.00 0.00 43.51 3.33
262 263 4.445385 GCCAAAATCTGATGTCAACAACAC 59.555 41.667 0.00 0.00 41.75 3.32
263 264 5.590145 CCAAAATCTGATGTCAACAACACA 58.410 37.500 0.00 0.00 41.75 3.72
264 265 5.688621 CCAAAATCTGATGTCAACAACACAG 59.311 40.000 0.00 0.00 41.75 3.66
265 266 6.459985 CCAAAATCTGATGTCAACAACACAGA 60.460 38.462 15.08 15.08 43.60 3.41
266 267 6.698008 AAATCTGATGTCAACAACACAGAA 57.302 33.333 16.02 6.28 43.16 3.02
267 268 6.698008 AATCTGATGTCAACAACACAGAAA 57.302 33.333 16.02 2.81 43.16 2.52
268 269 5.484173 TCTGATGTCAACAACACAGAAAC 57.516 39.130 12.27 0.00 41.75 2.78
269 270 4.335315 TCTGATGTCAACAACACAGAAACC 59.665 41.667 12.27 0.00 41.75 3.27
270 271 3.064682 TGATGTCAACAACACAGAAACCG 59.935 43.478 0.00 0.00 41.75 4.44
271 272 2.701107 TGTCAACAACACAGAAACCGA 58.299 42.857 0.00 0.00 31.20 4.69
272 273 2.675844 TGTCAACAACACAGAAACCGAG 59.324 45.455 0.00 0.00 31.20 4.63
273 274 2.031683 GTCAACAACACAGAAACCGAGG 59.968 50.000 0.00 0.00 0.00 4.63
274 275 2.093394 TCAACAACACAGAAACCGAGGA 60.093 45.455 0.00 0.00 0.00 3.71
275 276 1.949465 ACAACACAGAAACCGAGGAC 58.051 50.000 0.00 0.00 0.00 3.85
276 277 0.859232 CAACACAGAAACCGAGGACG 59.141 55.000 0.00 0.00 39.43 4.79
277 278 0.878961 AACACAGAAACCGAGGACGC 60.879 55.000 0.00 0.00 38.29 5.19
278 279 2.049433 ACAGAAACCGAGGACGCG 60.049 61.111 3.53 3.53 38.29 6.01
279 280 3.479269 CAGAAACCGAGGACGCGC 61.479 66.667 5.73 0.00 38.29 6.86
280 281 3.681835 AGAAACCGAGGACGCGCT 61.682 61.111 5.73 0.00 38.29 5.92
281 282 2.180017 GAAACCGAGGACGCGCTA 59.820 61.111 5.73 0.00 38.29 4.26
282 283 1.226888 GAAACCGAGGACGCGCTAT 60.227 57.895 5.73 0.00 38.29 2.97
283 284 0.029834 GAAACCGAGGACGCGCTATA 59.970 55.000 5.73 0.00 38.29 1.31
284 285 0.672342 AAACCGAGGACGCGCTATAT 59.328 50.000 5.73 0.00 38.29 0.86
285 286 0.672342 AACCGAGGACGCGCTATATT 59.328 50.000 5.73 0.00 38.29 1.28
286 287 0.672342 ACCGAGGACGCGCTATATTT 59.328 50.000 5.73 0.00 38.29 1.40
287 288 1.068127 ACCGAGGACGCGCTATATTTT 59.932 47.619 5.73 0.00 38.29 1.82
288 289 1.455786 CCGAGGACGCGCTATATTTTG 59.544 52.381 5.73 0.00 38.29 2.44
289 290 1.455786 CGAGGACGCGCTATATTTTGG 59.544 52.381 5.73 0.00 0.00 3.28
290 291 2.750948 GAGGACGCGCTATATTTTGGA 58.249 47.619 5.73 0.00 0.00 3.53
291 292 3.128349 GAGGACGCGCTATATTTTGGAA 58.872 45.455 5.73 0.00 0.00 3.53
292 293 2.870411 AGGACGCGCTATATTTTGGAAC 59.130 45.455 5.73 0.00 0.00 3.62
293 294 2.348218 GGACGCGCTATATTTTGGAACG 60.348 50.000 5.73 0.00 0.00 3.95
294 295 1.595794 ACGCGCTATATTTTGGAACGG 59.404 47.619 5.73 0.00 0.00 4.44
295 296 1.862201 CGCGCTATATTTTGGAACGGA 59.138 47.619 5.56 0.00 0.00 4.69
296 297 2.478894 CGCGCTATATTTTGGAACGGAT 59.521 45.455 5.56 0.00 0.00 4.18
297 298 3.664276 CGCGCTATATTTTGGAACGGATG 60.664 47.826 5.56 0.00 0.00 3.51
298 299 3.364964 GCGCTATATTTTGGAACGGATGG 60.365 47.826 0.00 0.00 0.00 3.51
299 300 4.062293 CGCTATATTTTGGAACGGATGGA 58.938 43.478 0.00 0.00 0.00 3.41
300 301 4.152402 CGCTATATTTTGGAACGGATGGAG 59.848 45.833 0.00 0.00 0.00 3.86
301 302 5.063880 GCTATATTTTGGAACGGATGGAGT 58.936 41.667 0.00 0.00 0.00 3.85
302 303 6.228258 GCTATATTTTGGAACGGATGGAGTA 58.772 40.000 0.00 0.00 0.00 2.59
303 304 6.879458 GCTATATTTTGGAACGGATGGAGTAT 59.121 38.462 0.00 0.00 0.00 2.12
304 305 7.148407 GCTATATTTTGGAACGGATGGAGTATG 60.148 40.741 0.00 0.00 0.00 2.39
305 306 3.992943 TTTGGAACGGATGGAGTATGT 57.007 42.857 0.00 0.00 0.00 2.29
306 307 5.423704 TTTTGGAACGGATGGAGTATGTA 57.576 39.130 0.00 0.00 0.00 2.29
353 354 9.543018 CCGTATTGAAATCTCTAAAAACACTTC 57.457 33.333 0.00 0.00 0.00 3.01
369 371 9.908152 AAAAACACTTCTTTTATAAATCGGAGG 57.092 29.630 0.00 2.24 0.00 4.30
392 395 5.281141 GGGAGTAGTTCCTATAGGGTAGGAG 60.281 52.000 18.97 0.00 45.98 3.69
408 411 0.035458 GGAGTGGAGTGGAGTTGTGG 59.965 60.000 0.00 0.00 0.00 4.17
411 414 1.141053 AGTGGAGTGGAGTTGTGGTTC 59.859 52.381 0.00 0.00 0.00 3.62
423 426 5.106157 GGAGTTGTGGTTCCTTGTAATCATG 60.106 44.000 0.00 0.00 0.00 3.07
425 428 3.088532 TGTGGTTCCTTGTAATCATGCC 58.911 45.455 0.00 0.00 0.00 4.40
426 429 3.088532 GTGGTTCCTTGTAATCATGCCA 58.911 45.455 0.00 0.00 0.00 4.92
427 430 3.701040 GTGGTTCCTTGTAATCATGCCAT 59.299 43.478 0.00 0.00 0.00 4.40
428 431 4.160252 GTGGTTCCTTGTAATCATGCCATT 59.840 41.667 0.00 0.00 0.00 3.16
429 432 4.776837 TGGTTCCTTGTAATCATGCCATTT 59.223 37.500 0.00 0.00 0.00 2.32
430 433 5.111293 GGTTCCTTGTAATCATGCCATTTG 58.889 41.667 0.00 0.00 0.00 2.32
431 434 4.389890 TCCTTGTAATCATGCCATTTGC 57.610 40.909 0.00 0.00 41.77 3.68
432 435 3.132646 TCCTTGTAATCATGCCATTTGCC 59.867 43.478 0.00 0.00 40.16 4.52
457 460 1.199615 AAACTTGTTTGGTGGTGGGG 58.800 50.000 0.00 0.00 0.00 4.96
463 466 0.176910 GTTTGGTGGTGGGGTTGTTG 59.823 55.000 0.00 0.00 0.00 3.33
465 468 0.684805 TTGGTGGTGGGGTTGTTGTC 60.685 55.000 0.00 0.00 0.00 3.18
466 469 2.190841 GGTGGTGGGGTTGTTGTCG 61.191 63.158 0.00 0.00 0.00 4.35
468 471 3.656045 GGTGGGGTTGTTGTCGCG 61.656 66.667 0.00 0.00 0.00 5.87
486 489 6.204359 TGTCGCGTTCTTCTCTAATATTACC 58.796 40.000 5.77 0.00 0.00 2.85
495 498 5.329191 TCTCTAATATTACCTCCGTCCCA 57.671 43.478 0.00 0.00 0.00 4.37
502 505 2.965572 TACCTCCGTCCCAAATTACG 57.034 50.000 0.00 0.00 38.80 3.18
510 513 6.219417 TCCGTCCCAAATTACGTATCTTAA 57.781 37.500 0.00 0.00 37.40 1.85
545 548 9.188588 ACATACGGATGTATTTAGATACGTTTG 57.811 33.333 12.79 16.07 42.99 2.93
552 556 6.629128 TGTATTTAGATACGTTTGTCCCGAA 58.371 36.000 0.00 0.00 40.85 4.30
555 559 3.880047 AGATACGTTTGTCCCGAATCA 57.120 42.857 0.00 0.00 0.00 2.57
556 560 4.402056 AGATACGTTTGTCCCGAATCAT 57.598 40.909 0.00 0.00 0.00 2.45
557 561 4.369182 AGATACGTTTGTCCCGAATCATC 58.631 43.478 0.00 0.00 0.00 2.92
561 565 2.742053 CGTTTGTCCCGAATCATCTGTT 59.258 45.455 0.00 0.00 0.00 3.16
567 571 5.419542 TGTCCCGAATCATCTGTTTTAGAG 58.580 41.667 0.00 0.00 39.20 2.43
605 609 9.762062 CAGATGTATCGACATATAGTGAAGTAC 57.238 37.037 0.00 0.00 46.64 2.73
606 610 8.948145 AGATGTATCGACATATAGTGAAGTACC 58.052 37.037 0.00 0.00 46.64 3.34
607 611 8.631480 ATGTATCGACATATAGTGAAGTACCA 57.369 34.615 0.00 0.00 44.77 3.25
608 612 8.631480 TGTATCGACATATAGTGAAGTACCAT 57.369 34.615 0.00 0.00 0.00 3.55
609 613 9.729281 TGTATCGACATATAGTGAAGTACCATA 57.271 33.333 0.00 0.00 0.00 2.74
758 772 5.006649 GGAAGCAAACAAAGCGAAATTCTTT 59.993 36.000 0.00 0.00 37.01 2.52
938 982 1.315257 CCAAAACCTCCCCGCATCTG 61.315 60.000 0.00 0.00 0.00 2.90
949 996 4.925861 GCATCTGGCGCCTCTCCC 62.926 72.222 29.70 9.64 0.00 4.30
1065 1112 3.827898 CACCTCGACTCCTCCGCC 61.828 72.222 0.00 0.00 0.00 6.13
1473 1532 0.538977 TCGTCTTCTCCACCCTCGTT 60.539 55.000 0.00 0.00 0.00 3.85
1515 1574 0.176449 TGCTCATGTACATGCTCGCT 59.824 50.000 27.71 0.00 38.65 4.93
1521 1580 1.218047 GTACATGCTCGCTCCCACA 59.782 57.895 0.00 0.00 0.00 4.17
1600 1659 2.047274 ACATGTTCGAGCCGGGTG 60.047 61.111 12.94 3.45 0.00 4.61
1851 1910 0.902531 TGAATGGGGTCGAGTTCCTC 59.097 55.000 0.00 0.00 0.00 3.71
1890 1949 1.003718 CCCGGTCTTCAAGGTGTCC 60.004 63.158 0.00 0.00 0.00 4.02
1902 1961 1.805945 GGTGTCCGTGATCGCACTC 60.806 63.158 7.12 0.00 42.93 3.51
1947 2006 1.523758 GGATGTCCTTCGTGTTGCTT 58.476 50.000 0.00 0.00 0.00 3.91
1959 2018 0.752743 TGTTGCTTGCAAGGCTCACT 60.753 50.000 27.10 0.00 0.00 3.41
2083 2142 6.985059 GGACAAGTGATTTGGGTATAGTAGAC 59.015 42.308 0.00 0.00 41.25 2.59
2134 2194 3.550431 TGCATCGCCCTAGCCTCC 61.550 66.667 0.00 0.00 34.57 4.30
2226 2286 7.014134 TGAGGCTTGAAATATTTTGTTCAGTCA 59.986 33.333 1.43 0.00 35.29 3.41
2231 2291 9.734620 CTTGAAATATTTTGTTCAGTCAGTTCA 57.265 29.630 1.43 0.00 35.29 3.18
2239 2299 4.717877 TGTTCAGTCAGTTCATGGTGATT 58.282 39.130 0.00 0.00 0.00 2.57
2319 2379 5.401550 CGTGTGCTCATTTGGTCAATTATT 58.598 37.500 0.00 0.00 0.00 1.40
2330 2390 6.441093 TTGGTCAATTATTCATCTGCAGTC 57.559 37.500 14.67 0.00 0.00 3.51
2331 2391 5.748402 TGGTCAATTATTCATCTGCAGTCT 58.252 37.500 14.67 0.00 0.00 3.24
2332 2392 6.182627 TGGTCAATTATTCATCTGCAGTCTT 58.817 36.000 14.67 0.00 0.00 3.01
2333 2393 6.660521 TGGTCAATTATTCATCTGCAGTCTTT 59.339 34.615 14.67 0.00 0.00 2.52
2334 2394 7.828717 TGGTCAATTATTCATCTGCAGTCTTTA 59.171 33.333 14.67 0.00 0.00 1.85
2335 2395 8.125448 GGTCAATTATTCATCTGCAGTCTTTAC 58.875 37.037 14.67 0.00 0.00 2.01
2336 2396 8.887717 GTCAATTATTCATCTGCAGTCTTTACT 58.112 33.333 14.67 0.00 35.91 2.24
2337 2397 9.453572 TCAATTATTCATCTGCAGTCTTTACTT 57.546 29.630 14.67 0.00 31.97 2.24
2343 2403 7.834068 TCATCTGCAGTCTTTACTTATTCAC 57.166 36.000 14.67 0.00 31.97 3.18
2344 2404 7.386059 TCATCTGCAGTCTTTACTTATTCACA 58.614 34.615 14.67 0.00 31.97 3.58
2345 2405 7.547019 TCATCTGCAGTCTTTACTTATTCACAG 59.453 37.037 14.67 0.00 31.97 3.66
2346 2406 6.759272 TCTGCAGTCTTTACTTATTCACAGT 58.241 36.000 14.67 0.00 31.97 3.55
2347 2407 6.868864 TCTGCAGTCTTTACTTATTCACAGTC 59.131 38.462 14.67 0.00 31.97 3.51
2379 2440 9.725019 TTATTCAGTAGTTCATGTTGATCTGTT 57.275 29.630 0.00 0.00 29.96 3.16
2572 2633 5.987347 TGCTAGTGTTGTAACTTTGGACTAC 59.013 40.000 0.00 0.00 0.00 2.73
2671 2732 1.680735 GTCTGGTGGCAATGTGTTTGA 59.319 47.619 0.00 0.00 37.53 2.69
2722 2783 7.543868 GGATACTTGAGAATGATTGTATCTCGG 59.456 40.741 10.49 0.00 41.96 4.63
2733 2794 6.100004 TGATTGTATCTCGGTCTGAAGTTTC 58.900 40.000 0.00 0.00 0.00 2.78
2737 2798 3.826236 TCTCGGTCTGAAGTTTCTACG 57.174 47.619 0.00 0.00 0.00 3.51
2775 2836 2.566529 TGCGTCGGCACTGAGTAG 59.433 61.111 0.00 0.00 46.21 2.57
2811 2881 3.830744 CCACATCATGGCCATTTTCAT 57.169 42.857 17.92 2.76 43.24 2.57
2854 2924 4.812626 ACGGTTGTAGTTTTAGTCCTTGTG 59.187 41.667 0.00 0.00 0.00 3.33
2855 2925 4.812626 CGGTTGTAGTTTTAGTCCTTGTGT 59.187 41.667 0.00 0.00 0.00 3.72
2856 2926 5.050567 CGGTTGTAGTTTTAGTCCTTGTGTC 60.051 44.000 0.00 0.00 0.00 3.67
2857 2927 6.053650 GGTTGTAGTTTTAGTCCTTGTGTCT 58.946 40.000 0.00 0.00 0.00 3.41
2858 2928 6.018180 GGTTGTAGTTTTAGTCCTTGTGTCTG 60.018 42.308 0.00 0.00 0.00 3.51
2875 2949 2.750166 GTCTGGGCTTCTAAAAAGGAGC 59.250 50.000 0.00 0.00 0.00 4.70
2877 2951 1.095600 GGGCTTCTAAAAAGGAGCCG 58.904 55.000 16.66 0.00 42.82 5.52
2881 2955 2.668556 GCTTCTAAAAAGGAGCCGTTGC 60.669 50.000 0.00 0.00 37.95 4.17
2907 2990 5.044179 TGGGGGAACTAAATCTTGATGTGAT 60.044 40.000 0.00 0.00 0.00 3.06
2949 3032 3.084786 GGCTAACCTTTCTGCTGACATT 58.915 45.455 0.00 0.00 0.00 2.71
2953 3036 5.507985 GCTAACCTTTCTGCTGACATTGTTT 60.508 40.000 0.00 0.00 0.00 2.83
3015 3098 1.814394 GATGCTGTCCTTGTTGCATGA 59.186 47.619 0.00 0.00 44.80 3.07
3020 3103 2.295349 CTGTCCTTGTTGCATGAAAGCT 59.705 45.455 0.00 0.00 34.99 3.74
3060 3143 2.704572 GTGCCTCTTGTAGATTGCTGT 58.295 47.619 0.00 0.00 0.00 4.40
3063 3146 3.260632 TGCCTCTTGTAGATTGCTGTGTA 59.739 43.478 0.00 0.00 0.00 2.90
3064 3147 3.868077 GCCTCTTGTAGATTGCTGTGTAG 59.132 47.826 0.00 0.00 0.00 2.74
3065 3148 4.437239 CCTCTTGTAGATTGCTGTGTAGG 58.563 47.826 0.00 0.00 0.00 3.18
3066 3149 3.861840 TCTTGTAGATTGCTGTGTAGGC 58.138 45.455 0.00 0.00 0.00 3.93
3067 3150 2.293677 TGTAGATTGCTGTGTAGGCG 57.706 50.000 0.00 0.00 0.00 5.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.835199 AATTGTATTCGTTTCGTCGAGG 57.165 40.909 0.00 0.00 40.86 4.63
1 2 6.079151 AGAAATTGTATTCGTTTCGTCGAG 57.921 37.500 0.00 0.00 40.86 4.04
3 4 8.157813 TCTAAAGAAATTGTATTCGTTTCGTCG 58.842 33.333 0.00 0.00 37.04 5.12
4 5 9.461760 CTCTAAAGAAATTGTATTCGTTTCGTC 57.538 33.333 0.00 0.00 37.04 4.20
5 6 8.985805 ACTCTAAAGAAATTGTATTCGTTTCGT 58.014 29.630 0.00 0.00 37.04 3.85
6 7 9.250986 CACTCTAAAGAAATTGTATTCGTTTCG 57.749 33.333 0.00 0.00 37.04 3.46
7 8 9.052080 GCACTCTAAAGAAATTGTATTCGTTTC 57.948 33.333 0.00 0.00 33.89 2.78
8 9 8.784043 AGCACTCTAAAGAAATTGTATTCGTTT 58.216 29.630 0.00 0.00 33.89 3.60
9 10 8.324163 AGCACTCTAAAGAAATTGTATTCGTT 57.676 30.769 0.00 0.00 35.62 3.85
10 11 7.907214 AGCACTCTAAAGAAATTGTATTCGT 57.093 32.000 0.00 0.00 34.46 3.85
11 12 8.660373 AGAAGCACTCTAAAGAAATTGTATTCG 58.340 33.333 0.00 0.00 31.29 3.34
14 15 9.507329 TGAAGAAGCACTCTAAAGAAATTGTAT 57.493 29.630 0.00 0.00 32.46 2.29
15 16 8.902540 TGAAGAAGCACTCTAAAGAAATTGTA 57.097 30.769 0.00 0.00 32.46 2.41
16 17 7.807977 TGAAGAAGCACTCTAAAGAAATTGT 57.192 32.000 0.00 0.00 32.46 2.71
17 18 7.967303 GGATGAAGAAGCACTCTAAAGAAATTG 59.033 37.037 0.00 0.00 32.46 2.32
18 19 7.667219 TGGATGAAGAAGCACTCTAAAGAAATT 59.333 33.333 0.00 0.00 32.46 1.82
19 20 7.170965 TGGATGAAGAAGCACTCTAAAGAAAT 58.829 34.615 0.00 0.00 32.46 2.17
20 21 6.533730 TGGATGAAGAAGCACTCTAAAGAAA 58.466 36.000 0.00 0.00 32.46 2.52
21 22 6.114187 TGGATGAAGAAGCACTCTAAAGAA 57.886 37.500 0.00 0.00 32.46 2.52
22 23 5.745312 TGGATGAAGAAGCACTCTAAAGA 57.255 39.130 0.00 0.00 32.46 2.52
23 24 5.353678 CCTTGGATGAAGAAGCACTCTAAAG 59.646 44.000 0.00 0.00 32.46 1.85
24 25 5.221925 ACCTTGGATGAAGAAGCACTCTAAA 60.222 40.000 0.00 0.00 32.46 1.85
25 26 4.287067 ACCTTGGATGAAGAAGCACTCTAA 59.713 41.667 0.00 0.00 32.46 2.10
26 27 3.840666 ACCTTGGATGAAGAAGCACTCTA 59.159 43.478 0.00 0.00 32.46 2.43
27 28 2.641815 ACCTTGGATGAAGAAGCACTCT 59.358 45.455 0.00 0.00 32.82 3.24
28 29 3.064900 ACCTTGGATGAAGAAGCACTC 57.935 47.619 0.00 0.00 32.82 3.51
29 30 3.584848 ACTACCTTGGATGAAGAAGCACT 59.415 43.478 0.00 0.00 32.82 4.40
30 31 3.935828 GACTACCTTGGATGAAGAAGCAC 59.064 47.826 0.00 0.00 32.82 4.40
31 32 3.840666 AGACTACCTTGGATGAAGAAGCA 59.159 43.478 0.00 0.00 32.82 3.91
32 33 4.479786 AGACTACCTTGGATGAAGAAGC 57.520 45.455 0.00 0.00 32.82 3.86
33 34 7.108847 ATTCAAGACTACCTTGGATGAAGAAG 58.891 38.462 0.00 0.00 46.72 2.85
34 35 7.020827 ATTCAAGACTACCTTGGATGAAGAA 57.979 36.000 0.00 0.00 46.72 2.52
35 36 6.627087 ATTCAAGACTACCTTGGATGAAGA 57.373 37.500 0.00 0.00 46.72 2.87
44 45 3.678056 TCACGCATTCAAGACTACCTT 57.322 42.857 0.00 0.00 34.91 3.50
45 46 3.735208 CGATCACGCATTCAAGACTACCT 60.735 47.826 0.00 0.00 0.00 3.08
46 47 2.535984 CGATCACGCATTCAAGACTACC 59.464 50.000 0.00 0.00 0.00 3.18
47 48 2.535984 CCGATCACGCATTCAAGACTAC 59.464 50.000 0.00 0.00 38.29 2.73
48 49 2.809446 CCGATCACGCATTCAAGACTA 58.191 47.619 0.00 0.00 38.29 2.59
49 50 1.645034 CCGATCACGCATTCAAGACT 58.355 50.000 0.00 0.00 38.29 3.24
50 51 0.026803 GCCGATCACGCATTCAAGAC 59.973 55.000 0.00 0.00 38.29 3.01
51 52 1.089481 GGCCGATCACGCATTCAAGA 61.089 55.000 4.33 0.00 38.29 3.02
52 53 1.353103 GGCCGATCACGCATTCAAG 59.647 57.895 4.33 0.00 38.29 3.02
53 54 2.460275 CGGCCGATCACGCATTCAA 61.460 57.895 24.07 0.00 38.29 2.69
54 55 2.844072 TTCGGCCGATCACGCATTCA 62.844 55.000 31.56 6.73 38.29 2.57
55 56 1.701545 TTTCGGCCGATCACGCATTC 61.702 55.000 31.56 0.00 38.29 2.67
56 57 1.302383 TTTTCGGCCGATCACGCATT 61.302 50.000 31.56 0.00 38.29 3.56
57 58 1.743623 TTTTCGGCCGATCACGCAT 60.744 52.632 31.56 0.00 38.29 4.73
58 59 2.357638 TTTTCGGCCGATCACGCA 60.358 55.556 31.56 10.33 38.29 5.24
59 60 2.097728 GTTTTCGGCCGATCACGC 59.902 61.111 31.56 13.89 38.29 5.34
60 61 2.030401 TGGTTTTCGGCCGATCACG 61.030 57.895 31.56 0.00 39.43 4.35
61 62 0.953960 AGTGGTTTTCGGCCGATCAC 60.954 55.000 31.56 29.40 0.00 3.06
62 63 0.250553 AAGTGGTTTTCGGCCGATCA 60.251 50.000 31.56 21.05 0.00 2.92
63 64 0.168128 CAAGTGGTTTTCGGCCGATC 59.832 55.000 31.56 21.21 0.00 3.69
64 65 1.241315 CCAAGTGGTTTTCGGCCGAT 61.241 55.000 31.56 9.43 0.00 4.18
65 66 1.894756 CCAAGTGGTTTTCGGCCGA 60.895 57.895 27.28 27.28 0.00 5.54
66 67 1.448922 TTCCAAGTGGTTTTCGGCCG 61.449 55.000 22.12 22.12 36.34 6.13
67 68 0.031585 GTTCCAAGTGGTTTTCGGCC 59.968 55.000 0.00 0.00 36.34 6.13
68 69 0.741915 TGTTCCAAGTGGTTTTCGGC 59.258 50.000 0.00 0.00 36.34 5.54
69 70 3.067461 TCAATGTTCCAAGTGGTTTTCGG 59.933 43.478 0.00 0.00 36.34 4.30
70 71 4.300189 TCAATGTTCCAAGTGGTTTTCG 57.700 40.909 0.00 0.00 36.34 3.46
71 72 6.986231 AGAATTCAATGTTCCAAGTGGTTTTC 59.014 34.615 8.44 0.00 36.34 2.29
72 73 6.762661 CAGAATTCAATGTTCCAAGTGGTTTT 59.237 34.615 8.44 0.00 36.34 2.43
73 74 6.282930 CAGAATTCAATGTTCCAAGTGGTTT 58.717 36.000 8.44 0.00 36.34 3.27
74 75 5.739935 GCAGAATTCAATGTTCCAAGTGGTT 60.740 40.000 8.44 0.00 36.34 3.67
75 76 4.262164 GCAGAATTCAATGTTCCAAGTGGT 60.262 41.667 8.44 0.00 36.34 4.16
76 77 4.240096 GCAGAATTCAATGTTCCAAGTGG 58.760 43.478 8.44 0.00 0.00 4.00
77 78 4.240096 GGCAGAATTCAATGTTCCAAGTG 58.760 43.478 8.44 0.00 0.00 3.16
78 79 3.896888 TGGCAGAATTCAATGTTCCAAGT 59.103 39.130 8.44 0.00 0.00 3.16
79 80 4.021719 AGTGGCAGAATTCAATGTTCCAAG 60.022 41.667 8.44 0.00 0.00 3.61
80 81 3.896888 AGTGGCAGAATTCAATGTTCCAA 59.103 39.130 8.44 0.00 0.00 3.53
81 82 3.499338 AGTGGCAGAATTCAATGTTCCA 58.501 40.909 8.44 2.67 0.00 3.53
82 83 3.426695 CGAGTGGCAGAATTCAATGTTCC 60.427 47.826 8.44 0.11 0.00 3.62
83 84 3.426695 CCGAGTGGCAGAATTCAATGTTC 60.427 47.826 8.44 0.00 0.00 3.18
84 85 2.489329 CCGAGTGGCAGAATTCAATGTT 59.511 45.455 8.44 0.00 0.00 2.71
85 86 2.086869 CCGAGTGGCAGAATTCAATGT 58.913 47.619 8.44 0.00 0.00 2.71
86 87 2.353889 CTCCGAGTGGCAGAATTCAATG 59.646 50.000 8.44 0.00 34.14 2.82
87 88 2.026822 ACTCCGAGTGGCAGAATTCAAT 60.027 45.455 8.44 0.00 34.14 2.57
88 89 1.347707 ACTCCGAGTGGCAGAATTCAA 59.652 47.619 8.44 0.00 34.14 2.69
89 90 0.976641 ACTCCGAGTGGCAGAATTCA 59.023 50.000 8.44 0.00 34.14 2.57
90 91 2.961526 TACTCCGAGTGGCAGAATTC 57.038 50.000 11.52 0.00 34.14 2.17
91 92 5.552870 ATTATACTCCGAGTGGCAGAATT 57.447 39.130 11.52 0.00 34.14 2.17
92 93 5.552870 AATTATACTCCGAGTGGCAGAAT 57.447 39.130 11.52 0.00 34.14 2.40
93 94 5.353394 AAATTATACTCCGAGTGGCAGAA 57.647 39.130 11.52 0.00 34.14 3.02
94 95 4.499188 CGAAATTATACTCCGAGTGGCAGA 60.499 45.833 11.52 0.00 34.14 4.26
95 96 3.736252 CGAAATTATACTCCGAGTGGCAG 59.264 47.826 11.52 0.00 34.14 4.85
96 97 3.382227 TCGAAATTATACTCCGAGTGGCA 59.618 43.478 11.52 0.00 34.14 4.92
97 98 3.973657 TCGAAATTATACTCCGAGTGGC 58.026 45.455 11.52 0.00 34.14 5.01
98 99 5.162075 GGATCGAAATTATACTCCGAGTGG 58.838 45.833 11.52 0.00 32.60 4.00
99 100 5.047943 AGGGATCGAAATTATACTCCGAGTG 60.048 44.000 11.52 0.00 32.60 3.51
100 101 5.078256 AGGGATCGAAATTATACTCCGAGT 58.922 41.667 6.25 6.25 32.60 4.18
101 102 5.646577 AGGGATCGAAATTATACTCCGAG 57.353 43.478 0.00 0.00 32.60 4.63
102 103 6.944290 TCTTAGGGATCGAAATTATACTCCGA 59.056 38.462 0.00 0.00 0.00 4.55
103 104 7.154435 TCTTAGGGATCGAAATTATACTCCG 57.846 40.000 0.00 0.00 0.00 4.63
104 105 7.982354 CCATCTTAGGGATCGAAATTATACTCC 59.018 40.741 0.00 0.00 31.27 3.85
105 106 8.934507 CCATCTTAGGGATCGAAATTATACTC 57.065 38.462 0.00 0.00 31.27 2.59
121 122 3.324846 TCATCATCCGAACCCATCTTAGG 59.675 47.826 0.00 0.00 0.00 2.69
122 123 4.607293 TCATCATCCGAACCCATCTTAG 57.393 45.455 0.00 0.00 0.00 2.18
123 124 6.270000 AGTTATCATCATCCGAACCCATCTTA 59.730 38.462 0.00 0.00 0.00 2.10
124 125 5.072329 AGTTATCATCATCCGAACCCATCTT 59.928 40.000 0.00 0.00 0.00 2.40
125 126 4.594920 AGTTATCATCATCCGAACCCATCT 59.405 41.667 0.00 0.00 0.00 2.90
126 127 4.899502 AGTTATCATCATCCGAACCCATC 58.100 43.478 0.00 0.00 0.00 3.51
127 128 4.982241 AGTTATCATCATCCGAACCCAT 57.018 40.909 0.00 0.00 0.00 4.00
128 129 4.771114 AAGTTATCATCATCCGAACCCA 57.229 40.909 0.00 0.00 0.00 4.51
129 130 6.540914 TGTTTAAGTTATCATCATCCGAACCC 59.459 38.462 0.00 0.00 0.00 4.11
130 131 7.548196 TGTTTAAGTTATCATCATCCGAACC 57.452 36.000 0.00 0.00 0.00 3.62
131 132 8.826710 TGATGTTTAAGTTATCATCATCCGAAC 58.173 33.333 18.81 4.42 40.73 3.95
132 133 8.956533 TGATGTTTAAGTTATCATCATCCGAA 57.043 30.769 18.81 4.71 40.73 4.30
133 134 8.956533 TTGATGTTTAAGTTATCATCATCCGA 57.043 30.769 21.25 11.16 43.57 4.55
134 135 9.655769 CTTTGATGTTTAAGTTATCATCATCCG 57.344 33.333 21.25 13.74 43.57 4.18
141 142 9.959749 GGAACAACTTTGATGTTTAAGTTATCA 57.040 29.630 0.00 0.00 41.34 2.15
142 143 9.959749 TGGAACAACTTTGATGTTTAAGTTATC 57.040 29.630 0.00 0.00 41.34 1.75
163 164 1.083489 TTCACATCGCCGAATGGAAC 58.917 50.000 0.00 0.00 37.49 3.62
164 165 1.466950 GTTTCACATCGCCGAATGGAA 59.533 47.619 0.00 0.00 37.49 3.53
165 166 1.083489 GTTTCACATCGCCGAATGGA 58.917 50.000 0.00 0.00 37.49 3.41
166 167 1.086696 AGTTTCACATCGCCGAATGG 58.913 50.000 0.00 0.00 38.77 3.16
167 168 2.900122 AAGTTTCACATCGCCGAATG 57.100 45.000 0.00 0.00 0.00 2.67
168 169 2.161609 GGAAAGTTTCACATCGCCGAAT 59.838 45.455 17.16 0.00 0.00 3.34
169 170 1.533731 GGAAAGTTTCACATCGCCGAA 59.466 47.619 17.16 0.00 0.00 4.30
170 171 1.153353 GGAAAGTTTCACATCGCCGA 58.847 50.000 17.16 0.00 0.00 5.54
171 172 0.871722 TGGAAAGTTTCACATCGCCG 59.128 50.000 17.16 0.00 0.00 6.46
172 173 2.867429 CATGGAAAGTTTCACATCGCC 58.133 47.619 17.16 0.00 0.00 5.54
173 174 2.095059 AGCATGGAAAGTTTCACATCGC 60.095 45.455 17.16 18.59 0.00 4.58
174 175 3.189080 TCAGCATGGAAAGTTTCACATCG 59.811 43.478 17.16 12.23 36.16 3.84
175 176 4.771590 TCAGCATGGAAAGTTTCACATC 57.228 40.909 17.16 11.04 36.16 3.06
176 177 5.534207 TTTCAGCATGGAAAGTTTCACAT 57.466 34.783 17.16 13.95 36.16 3.21
177 178 4.998671 TTTCAGCATGGAAAGTTTCACA 57.001 36.364 17.16 12.42 36.16 3.58
178 179 4.507756 GGTTTTCAGCATGGAAAGTTTCAC 59.492 41.667 17.16 7.41 45.95 3.18
179 180 4.442753 GGGTTTTCAGCATGGAAAGTTTCA 60.443 41.667 17.16 4.33 45.95 2.69
180 181 4.058124 GGGTTTTCAGCATGGAAAGTTTC 58.942 43.478 7.09 7.09 45.95 2.78
181 182 3.711190 AGGGTTTTCAGCATGGAAAGTTT 59.289 39.130 0.00 0.00 45.95 2.66
182 183 3.308401 AGGGTTTTCAGCATGGAAAGTT 58.692 40.909 0.00 0.00 45.95 2.66
183 184 2.962859 AGGGTTTTCAGCATGGAAAGT 58.037 42.857 0.00 0.00 45.95 2.66
184 185 4.202243 TGAAAGGGTTTTCAGCATGGAAAG 60.202 41.667 0.00 0.00 45.95 2.62
185 186 3.708631 TGAAAGGGTTTTCAGCATGGAAA 59.291 39.130 0.00 0.00 45.77 3.13
186 187 3.303938 TGAAAGGGTTTTCAGCATGGAA 58.696 40.909 0.00 0.00 45.77 3.53
187 188 2.956132 TGAAAGGGTTTTCAGCATGGA 58.044 42.857 0.00 0.00 45.77 3.41
195 196 1.000607 GCTTCGGGTGAAAGGGTTTTC 60.001 52.381 0.00 0.00 42.45 2.29
196 197 1.037493 GCTTCGGGTGAAAGGGTTTT 58.963 50.000 0.00 0.00 32.66 2.43
197 198 0.826256 GGCTTCGGGTGAAAGGGTTT 60.826 55.000 0.00 0.00 32.66 3.27
198 199 1.228459 GGCTTCGGGTGAAAGGGTT 60.228 57.895 0.00 0.00 32.66 4.11
199 200 1.789576 ATGGCTTCGGGTGAAAGGGT 61.790 55.000 0.00 0.00 32.66 4.34
200 201 1.000896 ATGGCTTCGGGTGAAAGGG 60.001 57.895 0.00 0.00 32.66 3.95
201 202 0.035056 AGATGGCTTCGGGTGAAAGG 60.035 55.000 0.00 0.00 32.66 3.11
202 203 1.339055 TGAGATGGCTTCGGGTGAAAG 60.339 52.381 0.00 0.00 32.66 2.62
203 204 0.690192 TGAGATGGCTTCGGGTGAAA 59.310 50.000 0.00 0.00 32.66 2.69
204 205 0.911769 ATGAGATGGCTTCGGGTGAA 59.088 50.000 0.00 0.00 0.00 3.18
205 206 0.911769 AATGAGATGGCTTCGGGTGA 59.088 50.000 0.00 0.00 0.00 4.02
206 207 1.755179 AAATGAGATGGCTTCGGGTG 58.245 50.000 0.00 0.00 0.00 4.61
207 208 2.025887 AGAAAATGAGATGGCTTCGGGT 60.026 45.455 0.00 0.00 0.00 5.28
208 209 2.648059 AGAAAATGAGATGGCTTCGGG 58.352 47.619 0.00 0.00 0.00 5.14
209 210 4.708726 AAAGAAAATGAGATGGCTTCGG 57.291 40.909 0.00 0.00 0.00 4.30
210 211 6.197842 GCATAAAAGAAAATGAGATGGCTTCG 59.802 38.462 0.00 0.00 0.00 3.79
211 212 6.478016 GGCATAAAAGAAAATGAGATGGCTTC 59.522 38.462 0.00 0.00 35.98 3.86
212 213 6.070653 TGGCATAAAAGAAAATGAGATGGCTT 60.071 34.615 0.00 0.00 38.70 4.35
213 214 5.422970 TGGCATAAAAGAAAATGAGATGGCT 59.577 36.000 0.00 0.00 38.70 4.75
214 215 5.663456 TGGCATAAAAGAAAATGAGATGGC 58.337 37.500 0.00 0.00 38.47 4.40
215 216 6.202188 GCATGGCATAAAAGAAAATGAGATGG 59.798 38.462 0.00 0.00 0.00 3.51
216 217 6.202188 GGCATGGCATAAAAGAAAATGAGATG 59.798 38.462 15.47 0.00 0.00 2.90
217 218 6.126997 TGGCATGGCATAAAAGAAAATGAGAT 60.127 34.615 19.43 0.00 0.00 2.75
218 219 5.187381 TGGCATGGCATAAAAGAAAATGAGA 59.813 36.000 19.43 0.00 0.00 3.27
219 220 5.421277 TGGCATGGCATAAAAGAAAATGAG 58.579 37.500 19.43 0.00 0.00 2.90
220 221 5.417754 TGGCATGGCATAAAAGAAAATGA 57.582 34.783 19.43 0.00 0.00 2.57
221 222 6.497785 TTTGGCATGGCATAAAAGAAAATG 57.502 33.333 23.96 0.00 0.00 2.32
222 223 7.612633 AGATTTTGGCATGGCATAAAAGAAAAT 59.387 29.630 24.64 21.99 32.76 1.82
223 224 6.941436 AGATTTTGGCATGGCATAAAAGAAAA 59.059 30.769 24.64 18.85 32.76 2.29
224 225 6.372103 CAGATTTTGGCATGGCATAAAAGAAA 59.628 34.615 24.64 19.46 32.76 2.52
225 226 5.875910 CAGATTTTGGCATGGCATAAAAGAA 59.124 36.000 24.64 12.55 32.76 2.52
226 227 5.187381 TCAGATTTTGGCATGGCATAAAAGA 59.813 36.000 24.64 19.24 32.76 2.52
227 228 5.421277 TCAGATTTTGGCATGGCATAAAAG 58.579 37.500 24.64 17.71 32.76 2.27
228 229 5.417754 TCAGATTTTGGCATGGCATAAAA 57.582 34.783 24.64 21.34 33.37 1.52
229 230 5.104859 ACATCAGATTTTGGCATGGCATAAA 60.105 36.000 24.64 23.26 0.00 1.40
230 231 4.406326 ACATCAGATTTTGGCATGGCATAA 59.594 37.500 23.96 23.68 0.00 1.90
231 232 3.962063 ACATCAGATTTTGGCATGGCATA 59.038 39.130 23.96 15.92 0.00 3.14
232 233 2.769663 ACATCAGATTTTGGCATGGCAT 59.230 40.909 23.96 8.35 0.00 4.40
233 234 2.166870 GACATCAGATTTTGGCATGGCA 59.833 45.455 19.43 19.43 0.00 4.92
234 235 2.166870 TGACATCAGATTTTGGCATGGC 59.833 45.455 13.29 13.29 0.00 4.40
235 236 4.178540 GTTGACATCAGATTTTGGCATGG 58.821 43.478 0.00 0.00 29.20 3.66
236 237 4.811908 TGTTGACATCAGATTTTGGCATG 58.188 39.130 0.00 0.00 29.20 4.06
237 238 5.221481 TGTTGTTGACATCAGATTTTGGCAT 60.221 36.000 0.00 0.00 32.00 4.40
238 239 4.099113 TGTTGTTGACATCAGATTTTGGCA 59.901 37.500 0.00 0.00 32.00 4.92
239 240 4.445385 GTGTTGTTGACATCAGATTTTGGC 59.555 41.667 0.00 0.00 41.10 4.52
240 241 5.590145 TGTGTTGTTGACATCAGATTTTGG 58.410 37.500 0.00 0.00 41.10 3.28
241 242 6.497437 TCTGTGTTGTTGACATCAGATTTTG 58.503 36.000 8.82 0.00 41.10 2.44
242 243 6.698008 TCTGTGTTGTTGACATCAGATTTT 57.302 33.333 8.82 0.00 41.10 1.82
243 244 6.698008 TTCTGTGTTGTTGACATCAGATTT 57.302 33.333 11.76 0.00 41.54 2.17
244 245 6.460123 GGTTTCTGTGTTGTTGACATCAGATT 60.460 38.462 11.76 0.00 41.54 2.40
245 246 5.009010 GGTTTCTGTGTTGTTGACATCAGAT 59.991 40.000 11.76 0.00 41.54 2.90
246 247 4.335315 GGTTTCTGTGTTGTTGACATCAGA 59.665 41.667 8.82 8.82 40.92 3.27
247 248 4.601019 GGTTTCTGTGTTGTTGACATCAG 58.399 43.478 0.00 1.57 41.10 2.90
248 249 3.064682 CGGTTTCTGTGTTGTTGACATCA 59.935 43.478 0.00 0.00 41.10 3.07
249 250 3.311322 TCGGTTTCTGTGTTGTTGACATC 59.689 43.478 0.00 0.00 41.10 3.06
250 251 3.275143 TCGGTTTCTGTGTTGTTGACAT 58.725 40.909 0.00 0.00 41.10 3.06
251 252 2.675844 CTCGGTTTCTGTGTTGTTGACA 59.324 45.455 0.00 0.00 35.42 3.58
252 253 2.031683 CCTCGGTTTCTGTGTTGTTGAC 59.968 50.000 0.00 0.00 0.00 3.18
253 254 2.093394 TCCTCGGTTTCTGTGTTGTTGA 60.093 45.455 0.00 0.00 0.00 3.18
254 255 2.031683 GTCCTCGGTTTCTGTGTTGTTG 59.968 50.000 0.00 0.00 0.00 3.33
255 256 2.285977 GTCCTCGGTTTCTGTGTTGTT 58.714 47.619 0.00 0.00 0.00 2.83
256 257 1.805120 CGTCCTCGGTTTCTGTGTTGT 60.805 52.381 0.00 0.00 0.00 3.32
257 258 0.859232 CGTCCTCGGTTTCTGTGTTG 59.141 55.000 0.00 0.00 0.00 3.33
258 259 0.878961 GCGTCCTCGGTTTCTGTGTT 60.879 55.000 0.00 0.00 37.56 3.32
259 260 1.300697 GCGTCCTCGGTTTCTGTGT 60.301 57.895 0.00 0.00 37.56 3.72
260 261 2.372690 CGCGTCCTCGGTTTCTGTG 61.373 63.158 0.00 0.00 37.56 3.66
261 262 2.049433 CGCGTCCTCGGTTTCTGT 60.049 61.111 0.00 0.00 37.56 3.41
262 263 2.537792 TAGCGCGTCCTCGGTTTCTG 62.538 60.000 8.43 0.00 40.82 3.02
263 264 1.664321 ATAGCGCGTCCTCGGTTTCT 61.664 55.000 8.43 0.00 40.82 2.52
264 265 0.029834 TATAGCGCGTCCTCGGTTTC 59.970 55.000 8.43 0.00 40.82 2.78
265 266 0.672342 ATATAGCGCGTCCTCGGTTT 59.328 50.000 8.43 0.00 40.82 3.27
266 267 0.672342 AATATAGCGCGTCCTCGGTT 59.328 50.000 8.43 0.00 40.82 4.44
267 268 0.672342 AAATATAGCGCGTCCTCGGT 59.328 50.000 8.43 0.00 43.07 4.69
268 269 1.455786 CAAAATATAGCGCGTCCTCGG 59.544 52.381 8.43 0.00 37.56 4.63
269 270 1.455786 CCAAAATATAGCGCGTCCTCG 59.544 52.381 8.43 0.00 40.37 4.63
270 271 2.750948 TCCAAAATATAGCGCGTCCTC 58.249 47.619 8.43 0.00 0.00 3.71
271 272 2.870411 GTTCCAAAATATAGCGCGTCCT 59.130 45.455 8.43 0.00 0.00 3.85
272 273 2.348218 CGTTCCAAAATATAGCGCGTCC 60.348 50.000 8.43 0.00 0.00 4.79
273 274 2.348218 CCGTTCCAAAATATAGCGCGTC 60.348 50.000 8.43 0.00 0.00 5.19
274 275 1.595794 CCGTTCCAAAATATAGCGCGT 59.404 47.619 8.43 0.00 0.00 6.01
275 276 1.862201 TCCGTTCCAAAATATAGCGCG 59.138 47.619 0.00 0.00 0.00 6.86
276 277 3.364964 CCATCCGTTCCAAAATATAGCGC 60.365 47.826 0.00 0.00 0.00 5.92
277 278 4.062293 TCCATCCGTTCCAAAATATAGCG 58.938 43.478 0.00 0.00 0.00 4.26
278 279 5.063880 ACTCCATCCGTTCCAAAATATAGC 58.936 41.667 0.00 0.00 0.00 2.97
279 280 7.878127 ACATACTCCATCCGTTCCAAAATATAG 59.122 37.037 0.00 0.00 0.00 1.31
280 281 7.741785 ACATACTCCATCCGTTCCAAAATATA 58.258 34.615 0.00 0.00 0.00 0.86
281 282 6.601332 ACATACTCCATCCGTTCCAAAATAT 58.399 36.000 0.00 0.00 0.00 1.28
282 283 5.996644 ACATACTCCATCCGTTCCAAAATA 58.003 37.500 0.00 0.00 0.00 1.40
283 284 4.855340 ACATACTCCATCCGTTCCAAAAT 58.145 39.130 0.00 0.00 0.00 1.82
284 285 4.295141 ACATACTCCATCCGTTCCAAAA 57.705 40.909 0.00 0.00 0.00 2.44
285 286 3.992943 ACATACTCCATCCGTTCCAAA 57.007 42.857 0.00 0.00 0.00 3.28
286 287 6.928348 ATATACATACTCCATCCGTTCCAA 57.072 37.500 0.00 0.00 0.00 3.53
287 288 9.128404 GTATATATACATACTCCATCCGTTCCA 57.872 37.037 16.50 0.00 33.52 3.53
288 289 9.128404 TGTATATATACATACTCCATCCGTTCC 57.872 37.037 19.51 0.00 38.28 3.62
348 349 7.048512 ACTCCCTCCGATTTATAAAAGAAGTG 58.951 38.462 1.21 0.00 0.00 3.16
353 354 7.656542 GGAACTACTCCCTCCGATTTATAAAAG 59.343 40.741 1.21 0.00 38.44 2.27
359 361 4.261411 AGGAACTACTCCCTCCGATTTA 57.739 45.455 0.00 0.00 46.81 1.40
392 395 1.594331 GAACCACAACTCCACTCCAC 58.406 55.000 0.00 0.00 0.00 4.02
408 411 4.567959 GCAAATGGCATGATTACAAGGAAC 59.432 41.667 0.00 0.00 43.97 3.62
411 414 3.118702 TGGCAAATGGCATGATTACAAGG 60.119 43.478 0.00 0.00 46.12 3.61
423 426 4.064388 ACAAGTTTTACATGGCAAATGGC 58.936 39.130 0.00 0.00 43.74 4.40
425 428 6.038050 ACCAAACAAGTTTTACATGGCAAATG 59.962 34.615 0.00 0.00 0.00 2.32
426 429 6.038050 CACCAAACAAGTTTTACATGGCAAAT 59.962 34.615 0.00 0.00 0.00 2.32
427 430 5.352569 CACCAAACAAGTTTTACATGGCAAA 59.647 36.000 0.00 0.00 0.00 3.68
428 431 4.872691 CACCAAACAAGTTTTACATGGCAA 59.127 37.500 0.00 0.00 0.00 4.52
429 432 4.437239 CACCAAACAAGTTTTACATGGCA 58.563 39.130 0.00 0.00 0.00 4.92
430 433 3.807071 CCACCAAACAAGTTTTACATGGC 59.193 43.478 0.00 0.00 0.00 4.40
431 434 4.808364 CACCACCAAACAAGTTTTACATGG 59.192 41.667 0.00 4.56 0.00 3.66
432 435 4.808364 CCACCACCAAACAAGTTTTACATG 59.192 41.667 0.00 0.00 0.00 3.21
457 460 1.859080 AGAGAAGAACGCGACAACAAC 59.141 47.619 15.93 0.00 0.00 3.32
463 466 6.437094 AGGTAATATTAGAGAAGAACGCGAC 58.563 40.000 15.93 6.52 0.00 5.19
465 468 5.857517 GGAGGTAATATTAGAGAAGAACGCG 59.142 44.000 3.53 3.53 0.00 6.01
466 469 5.857517 CGGAGGTAATATTAGAGAAGAACGC 59.142 44.000 0.00 0.00 0.00 4.84
468 471 7.369607 GGACGGAGGTAATATTAGAGAAGAAC 58.630 42.308 0.00 0.00 0.00 3.01
486 489 4.317671 AGATACGTAATTTGGGACGGAG 57.682 45.455 0.00 0.00 43.32 4.63
520 523 9.188588 ACAAACGTATCTAAATACATCCGTATG 57.811 33.333 0.00 0.00 38.37 2.39
522 525 7.862372 GGACAAACGTATCTAAATACATCCGTA 59.138 37.037 0.00 0.00 38.11 4.02
524 527 6.145048 GGGACAAACGTATCTAAATACATCCG 59.855 42.308 0.00 0.00 38.11 4.18
536 539 4.209288 CAGATGATTCGGGACAAACGTATC 59.791 45.833 0.00 0.00 0.00 2.24
538 541 3.056393 ACAGATGATTCGGGACAAACGTA 60.056 43.478 0.00 0.00 0.00 3.57
545 548 5.420409 ACTCTAAAACAGATGATTCGGGAC 58.580 41.667 0.00 0.00 31.13 4.46
580 584 8.948145 GGTACTTCACTATATGTCGATACATCT 58.052 37.037 0.00 0.00 42.92 2.90
581 585 8.727910 TGGTACTTCACTATATGTCGATACATC 58.272 37.037 0.00 0.00 42.92 3.06
583 587 8.631480 ATGGTACTTCACTATATGTCGATACA 57.369 34.615 0.00 0.00 40.69 2.29
594 598 8.663025 CGTACGTATCATATGGTACTTCACTAT 58.337 37.037 21.04 3.87 34.54 2.12
598 602 6.707608 ACTCGTACGTATCATATGGTACTTCA 59.292 38.462 21.04 5.98 34.54 3.02
605 609 3.912563 GCACACTCGTACGTATCATATGG 59.087 47.826 16.05 0.00 0.00 2.74
606 610 3.598246 CGCACACTCGTACGTATCATATG 59.402 47.826 16.05 7.12 0.00 1.78
607 611 3.249320 ACGCACACTCGTACGTATCATAT 59.751 43.478 16.05 0.00 43.25 1.78
608 612 2.609002 ACGCACACTCGTACGTATCATA 59.391 45.455 16.05 0.00 43.25 2.15
609 613 1.399440 ACGCACACTCGTACGTATCAT 59.601 47.619 16.05 0.00 43.25 2.45
610 614 0.798159 ACGCACACTCGTACGTATCA 59.202 50.000 16.05 0.00 43.25 2.15
611 615 2.719325 TACGCACACTCGTACGTATC 57.281 50.000 16.05 0.00 43.25 2.24
618 622 2.717580 TCTCAAATACGCACACTCGT 57.282 45.000 0.00 0.00 45.49 4.18
758 772 2.224159 GGACCTCAGCTCCCCAACA 61.224 63.158 0.00 0.00 0.00 3.33
759 773 2.671682 GGACCTCAGCTCCCCAAC 59.328 66.667 0.00 0.00 0.00 3.77
763 777 4.154347 CTGCGGACCTCAGCTCCC 62.154 72.222 0.00 0.00 37.92 4.30
1554 1613 4.200283 GAGGAGACGGCGGCAGAG 62.200 72.222 18.30 0.00 0.00 3.35
1600 1659 2.278923 GGAGCCGAGCGAGTAAGC 60.279 66.667 0.00 0.00 37.41 3.09
1692 1751 0.598680 CGATGAGCCCGTTGGAGATC 60.599 60.000 0.00 0.00 0.00 2.75
1890 1949 3.071459 GCAACGGAGTGCGATCACG 62.071 63.158 12.27 0.00 45.00 4.35
1947 2006 2.595463 GCACCAGTGAGCCTTGCA 60.595 61.111 0.99 0.00 33.24 4.08
1959 2018 2.689553 TATCTGATTTCTGCGCACCA 57.310 45.000 5.66 0.00 0.00 4.17
2083 2142 1.397390 ATGCCCCGACCTACTTACCG 61.397 60.000 0.00 0.00 0.00 4.02
2114 2174 2.124736 GGCTAGGGCGATGCACAA 60.125 61.111 0.00 0.00 39.81 3.33
2134 2194 1.108727 TGGCCTGTGTCCAAGCAAAG 61.109 55.000 3.32 0.00 29.11 2.77
2226 2286 6.009589 TCATAACACCAAATCACCATGAACT 58.990 36.000 0.00 0.00 0.00 3.01
2231 2291 5.595542 CCATCTCATAACACCAAATCACCAT 59.404 40.000 0.00 0.00 0.00 3.55
2239 2299 2.754552 GCAAGCCATCTCATAACACCAA 59.245 45.455 0.00 0.00 0.00 3.67
2319 2379 7.386059 TGTGAATAAGTAAAGACTGCAGATGA 58.614 34.615 23.35 0.00 35.52 2.92
2340 2400 9.909644 GAACTACTGAATAAGTAAAGACTGTGA 57.090 33.333 0.00 0.00 40.92 3.58
2341 2401 9.692749 TGAACTACTGAATAAGTAAAGACTGTG 57.307 33.333 0.00 0.00 40.92 3.66
2379 2440 6.208402 TGGTTAGTATCAGAAAATGCAAGCAA 59.792 34.615 0.00 0.00 0.00 3.91
2557 2618 3.890756 TGTCGGAGTAGTCCAAAGTTACA 59.109 43.478 16.94 7.42 44.18 2.41
2572 2633 4.451629 AGTACAATGTAACCTGTCGGAG 57.548 45.455 0.00 0.00 0.00 4.63
2627 2688 7.335627 ACTGATACATCCTTTCGATTACCAAA 58.664 34.615 0.00 0.00 0.00 3.28
2671 2732 9.343539 CCTAGCTAAGCAGGAAATTATAACTTT 57.656 33.333 0.00 0.00 31.74 2.66
2716 2777 3.128938 CCGTAGAAACTTCAGACCGAGAT 59.871 47.826 0.00 0.00 0.00 2.75
2717 2778 2.486982 CCGTAGAAACTTCAGACCGAGA 59.513 50.000 0.00 0.00 0.00 4.04
2722 2783 5.121925 GGAAAATCCCGTAGAAACTTCAGAC 59.878 44.000 0.00 0.00 0.00 3.51
2733 2794 1.141053 CTCCCCAGGAAAATCCCGTAG 59.859 57.143 0.00 0.00 37.19 3.51
2737 2798 4.811063 GCATATACTCCCCAGGAAAATCCC 60.811 50.000 0.00 0.00 37.19 3.85
2771 2832 3.785887 TGGGGAAATTATGAGCCACTACT 59.214 43.478 0.00 0.00 0.00 2.57
2775 2836 2.733956 TGTGGGGAAATTATGAGCCAC 58.266 47.619 0.00 0.00 0.00 5.01
2804 2874 7.493320 GGAATGTCAATGTGCATACATGAAAAT 59.507 33.333 0.00 0.00 46.54 1.82
2805 2875 6.812656 GGAATGTCAATGTGCATACATGAAAA 59.187 34.615 0.00 0.00 46.54 2.29
2806 2876 6.071503 TGGAATGTCAATGTGCATACATGAAA 60.072 34.615 0.00 0.00 46.54 2.69
2807 2877 5.418209 TGGAATGTCAATGTGCATACATGAA 59.582 36.000 0.00 0.00 46.54 2.57
2808 2878 4.948621 TGGAATGTCAATGTGCATACATGA 59.051 37.500 0.00 0.00 46.54 3.07
2811 2881 3.126686 CGTGGAATGTCAATGTGCATACA 59.873 43.478 0.00 0.00 41.89 2.29
2854 2924 2.750166 GCTCCTTTTTAGAAGCCCAGAC 59.250 50.000 0.00 0.00 0.00 3.51
2855 2925 2.290960 GGCTCCTTTTTAGAAGCCCAGA 60.291 50.000 0.70 0.00 36.52 3.86
2856 2926 2.095461 GGCTCCTTTTTAGAAGCCCAG 58.905 52.381 0.70 0.00 36.52 4.45
2857 2927 1.613255 CGGCTCCTTTTTAGAAGCCCA 60.613 52.381 6.66 0.00 39.08 5.36
2858 2928 1.095600 CGGCTCCTTTTTAGAAGCCC 58.904 55.000 6.66 0.00 39.08 5.19
2875 2949 0.250989 TTAGTTCCCCCAAGCAACGG 60.251 55.000 0.00 0.00 0.00 4.44
2877 2951 3.431415 AGATTTAGTTCCCCCAAGCAAC 58.569 45.455 0.00 0.00 0.00 4.17
2881 2955 5.126061 CACATCAAGATTTAGTTCCCCCAAG 59.874 44.000 0.00 0.00 0.00 3.61
2907 2990 6.299141 AGCCTTCTGAAATCTGAAACACTAA 58.701 36.000 4.62 0.00 34.24 2.24
3004 3087 2.030893 TCCGAAGCTTTCATGCAACAAG 60.031 45.455 0.00 0.00 34.99 3.16
3013 3096 2.747446 GCCAATACTTCCGAAGCTTTCA 59.253 45.455 8.11 0.00 0.00 2.69
3015 3098 2.749621 CAGCCAATACTTCCGAAGCTTT 59.250 45.455 8.11 0.00 0.00 3.51
3020 3103 1.404986 CGACCAGCCAATACTTCCGAA 60.405 52.381 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.