Multiple sequence alignment - TraesCS3D01G329900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G329900 chr3D 100.000 4066 0 0 1 4066 442753609 442757674 0.000000e+00 7509.0
1 TraesCS3D01G329900 chr3D 98.864 88 0 1 3133 3220 442756653 442756739 5.440000e-34 156.0
2 TraesCS3D01G329900 chr3D 98.864 88 0 1 3045 3131 442756741 442756828 5.440000e-34 156.0
3 TraesCS3D01G329900 chr3D 79.333 150 27 4 3455 3602 56680330 56680183 7.190000e-18 102.0
4 TraesCS3D01G329900 chr3B 95.330 1242 50 4 1104 2345 580205713 580206946 0.000000e+00 1965.0
5 TraesCS3D01G329900 chr3B 83.353 835 55 44 149 947 580204836 580205622 0.000000e+00 695.0
6 TraesCS3D01G329900 chr3B 90.909 462 35 6 3608 4066 580214715 580215172 7.470000e-172 614.0
7 TraesCS3D01G329900 chr3B 85.526 456 38 8 3153 3608 580214257 580214684 6.200000e-123 451.0
8 TraesCS3D01G329900 chr3B 93.991 233 13 1 1104 1336 828460459 828460690 6.470000e-93 351.0
9 TraesCS3D01G329900 chr3B 86.552 290 20 4 2776 3064 580213941 580214212 6.600000e-78 302.0
10 TraesCS3D01G329900 chr3B 91.000 100 9 0 2643 2742 580207107 580207206 7.090000e-28 135.0
11 TraesCS3D01G329900 chr3B 84.694 98 8 4 2557 2648 243939700 243939796 1.560000e-14 91.6
12 TraesCS3D01G329900 chr3B 89.474 76 1 1 2345 2413 580206992 580207067 5.600000e-14 89.8
13 TraesCS3D01G329900 chr3B 90.476 42 4 0 906 947 828460327 828460368 5.680000e-04 56.5
14 TraesCS3D01G329900 chr3A 94.861 1226 49 3 1105 2316 583926673 583927898 0.000000e+00 1903.0
15 TraesCS3D01G329900 chr3A 92.017 476 34 3 3133 3608 583932346 583932817 0.000000e+00 665.0
16 TraesCS3D01G329900 chr3A 81.414 764 74 34 1 737 583925696 583926418 2.740000e-156 562.0
17 TraesCS3D01G329900 chr3A 94.787 211 8 3 2923 3131 583932224 583932433 3.920000e-85 326.0
18 TraesCS3D01G329900 chr4B 73.538 1077 209 57 1196 2218 387511510 387510456 1.400000e-89 340.0
19 TraesCS3D01G329900 chr4B 76.154 260 56 5 3343 3600 573401243 573400988 9.170000e-27 132.0
20 TraesCS3D01G329900 chr4B 85.714 91 8 3 2559 2644 450926300 450926210 1.560000e-14 91.6
21 TraesCS3D01G329900 chr4B 84.375 96 9 4 2558 2648 399102344 399102438 5.600000e-14 89.8
22 TraesCS3D01G329900 chr4B 97.297 37 1 0 2515 2551 621070451 621070415 3.390000e-06 63.9
23 TraesCS3D01G329900 chr7B 91.845 233 18 1 1104 1336 532455665 532455434 1.410000e-84 324.0
24 TraesCS3D01G329900 chr7B 76.232 345 41 23 633 947 532456089 532455756 1.180000e-30 145.0
25 TraesCS3D01G329900 chr4D 73.308 1064 210 52 1196 2210 310111343 310110305 1.410000e-84 324.0
26 TraesCS3D01G329900 chr4D 79.839 124 13 3 3458 3570 93061017 93060895 3.370000e-11 80.5
27 TraesCS3D01G329900 chr5B 79.060 468 82 14 3137 3599 318141298 318141754 1.420000e-79 307.0
28 TraesCS3D01G329900 chr4A 75.696 539 103 22 1688 2210 164626470 164626996 1.130000e-60 244.0
29 TraesCS3D01G329900 chr4A 74.739 479 95 19 1196 1664 164625949 164626411 1.490000e-44 191.0
30 TraesCS3D01G329900 chr5D 86.000 100 9 2 2550 2644 517755513 517755414 7.190000e-18 102.0
31 TraesCS3D01G329900 chrUn 86.957 92 7 2 2558 2644 135090711 135090802 9.300000e-17 99.0
32 TraesCS3D01G329900 chrUn 85.149 101 9 4 2549 2644 135090817 135090718 9.300000e-17 99.0
33 TraesCS3D01G329900 chrUn 86.957 92 7 2 2558 2644 152687567 152687658 9.300000e-17 99.0
34 TraesCS3D01G329900 chrUn 85.149 101 9 4 2549 2644 152687673 152687574 9.300000e-17 99.0
35 TraesCS3D01G329900 chr2D 81.102 127 20 4 3455 3579 534739128 534739252 9.300000e-17 99.0
36 TraesCS3D01G329900 chr2D 91.111 45 3 1 2515 2559 514947907 514947950 4.390000e-05 60.2
37 TraesCS3D01G329900 chr2D 92.308 39 3 0 2515 2553 15937359 15937397 5.680000e-04 56.5
38 TraesCS3D01G329900 chr2B 84.211 95 9 4 2559 2648 260607312 260607219 2.010000e-13 87.9
39 TraesCS3D01G329900 chr2B 95.000 40 1 1 2515 2554 788032254 788032216 1.220000e-05 62.1
40 TraesCS3D01G329900 chr2B 100.000 29 0 0 2473 2501 76822806 76822778 2.000000e-03 54.7
41 TraesCS3D01G329900 chr1B 92.000 50 1 3 2515 2561 111936574 111936623 2.620000e-07 67.6
42 TraesCS3D01G329900 chr5A 90.000 50 5 0 3524 3573 706633471 706633520 9.430000e-07 65.8
43 TraesCS3D01G329900 chr6D 100.000 33 0 0 2515 2547 27848379 27848347 1.220000e-05 62.1
44 TraesCS3D01G329900 chr2A 100.000 33 0 0 2515 2547 66004784 66004816 1.220000e-05 62.1
45 TraesCS3D01G329900 chr1A 97.222 36 1 0 2515 2550 29287048 29287013 1.220000e-05 62.1
46 TraesCS3D01G329900 chr1A 90.909 44 1 2 2515 2558 462618016 462618056 5.680000e-04 56.5
47 TraesCS3D01G329900 chr7A 100.000 28 0 0 2473 2500 697006917 697006890 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G329900 chr3D 442753609 442757674 4065 False 2607.000000 7509 99.242667 1 4066 3 chr3D.!!$F1 4065
1 TraesCS3D01G329900 chr3B 580204836 580207206 2370 False 721.200000 1965 89.789250 149 2742 4 chr3B.!!$F2 2593
2 TraesCS3D01G329900 chr3B 580213941 580215172 1231 False 455.666667 614 87.662333 2776 4066 3 chr3B.!!$F3 1290
3 TraesCS3D01G329900 chr3A 583925696 583927898 2202 False 1232.500000 1903 88.137500 1 2316 2 chr3A.!!$F1 2315
4 TraesCS3D01G329900 chr3A 583932224 583932817 593 False 495.500000 665 93.402000 2923 3608 2 chr3A.!!$F2 685
5 TraesCS3D01G329900 chr4B 387510456 387511510 1054 True 340.000000 340 73.538000 1196 2218 1 chr4B.!!$R1 1022
6 TraesCS3D01G329900 chr7B 532455434 532456089 655 True 234.500000 324 84.038500 633 1336 2 chr7B.!!$R1 703
7 TraesCS3D01G329900 chr4D 310110305 310111343 1038 True 324.000000 324 73.308000 1196 2210 1 chr4D.!!$R2 1014
8 TraesCS3D01G329900 chr4A 164625949 164626996 1047 False 217.500000 244 75.217500 1196 2210 2 chr4A.!!$F1 1014

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
729 793 0.032815 GCTCTCCGTAGCCATTCTCC 59.967 60.0 0.00 0.0 36.45 3.71 F
909 1007 0.035630 GGATGTGTCTTGCTGGCTCT 60.036 55.0 0.00 0.0 0.00 4.09 F
914 1017 0.037882 TGTCTTGCTGGCTCTTCTCG 60.038 55.0 0.00 0.0 0.00 4.04 F
1097 1233 0.040958 CGTTTCCTGCTGCAACAGAC 60.041 55.0 18.66 7.9 40.25 3.51 F
2003 2222 0.375106 GCATGAAGCTCAAGTACGCC 59.625 55.0 0.00 0.0 41.15 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2627 2904 0.338814 AGTTACTCCCTCCGTCCCAT 59.661 55.000 0.0 0.0 0.00 4.00 R
2773 3050 0.034089 ACTTGGGGGTCAATAGCTGC 60.034 55.000 0.0 0.0 34.45 5.25 R
2774 3051 1.408822 GGACTTGGGGGTCAATAGCTG 60.409 57.143 0.0 0.0 37.91 4.24 R
3090 3379 0.035343 GAGACCTGGTTTGTAGCCCC 60.035 60.000 0.0 0.0 0.00 5.80 R
3180 3469 0.035343 GGAGACCTGGTTTGTAGCCC 60.035 60.000 0.0 0.0 0.00 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 9.811995 AGGGTGTAAAATTAAGTGAACTTTTTC 57.188 29.630 0.21 0.00 37.40 2.29
51 52 1.059369 GCTACATGTTGAGCGCACG 59.941 57.895 11.47 0.00 0.00 5.34
86 87 1.532604 GCCCCACTAACACCAAAGCC 61.533 60.000 0.00 0.00 0.00 4.35
92 94 2.035832 CACTAACACCAAAGCCAAAGGG 59.964 50.000 0.00 0.00 37.18 3.95
98 100 1.768275 ACCAAAGCCAAAGGGAAAAGG 59.232 47.619 0.00 0.00 35.59 3.11
100 102 2.224281 CCAAAGCCAAAGGGAAAAGGTC 60.224 50.000 0.00 0.00 35.59 3.85
113 115 1.125633 AAAGGTCCAGGTGTACGTGT 58.874 50.000 0.00 0.00 0.00 4.49
136 138 1.268743 GCATACGGACGTACCACTACC 60.269 57.143 6.73 0.00 38.90 3.18
142 144 1.074872 GACGTACCACTACCGCAAGC 61.075 60.000 0.00 0.00 0.00 4.01
165 167 1.671379 GGCCACGTCCTCTGTTTCC 60.671 63.158 0.00 0.00 0.00 3.13
176 178 3.053455 CCTCTGTTTCCGATCGCTTATC 58.947 50.000 10.32 0.00 0.00 1.75
195 199 2.951726 TCAGTGCTCATCTTTCTCGTG 58.048 47.619 0.00 0.00 0.00 4.35
230 241 1.401905 GAAATTAGCTTGCCGACCAGG 59.598 52.381 0.00 0.00 44.97 4.45
231 242 0.394352 AATTAGCTTGCCGACCAGGG 60.394 55.000 0.00 0.00 41.48 4.45
323 357 7.985199 CGTAAAACGGCGTTATTAAACTAAA 57.015 32.000 27.05 3.33 38.08 1.85
325 359 9.049974 CGTAAAACGGCGTTATTAAACTAAAAT 57.950 29.630 27.05 1.91 38.08 1.82
399 441 1.485066 AGTACTATTCCCCAAGCCACG 59.515 52.381 0.00 0.00 0.00 4.94
400 442 0.179468 TACTATTCCCCAAGCCACGC 59.821 55.000 0.00 0.00 0.00 5.34
401 443 1.823899 CTATTCCCCAAGCCACGCC 60.824 63.158 0.00 0.00 0.00 5.68
402 444 3.352990 TATTCCCCAAGCCACGCCC 62.353 63.158 0.00 0.00 0.00 6.13
476 518 3.507009 GACGAGACCCCGAGACCG 61.507 72.222 0.00 0.00 0.00 4.79
488 530 2.380084 CGAGACCGGAAATTCTCCAA 57.620 50.000 9.46 0.00 45.74 3.53
563 611 2.584608 CCGAATCCAAGCTCCCGT 59.415 61.111 0.00 0.00 0.00 5.28
567 615 0.462759 GAATCCAAGCTCCCGTCTGG 60.463 60.000 0.00 0.00 0.00 3.86
587 635 4.385405 GGCTGCTCCTGCTCGTGT 62.385 66.667 0.00 0.00 40.48 4.49
588 636 3.117171 GCTGCTCCTGCTCGTGTG 61.117 66.667 0.00 0.00 40.48 3.82
591 639 4.008933 GCTCCTGCTCGTGTGGGT 62.009 66.667 0.00 0.00 36.03 4.51
596 644 4.927782 TGCTCGTGTGGGTGTGCC 62.928 66.667 0.00 0.00 0.00 5.01
606 664 1.735559 GGGTGTGCCGTCGTTAGTC 60.736 63.158 0.00 0.00 34.97 2.59
607 665 1.288127 GGTGTGCCGTCGTTAGTCT 59.712 57.895 0.00 0.00 0.00 3.24
619 677 1.077089 GTTAGTCTGCGCTCGGGTTC 61.077 60.000 9.73 0.00 0.00 3.62
621 679 4.719369 GTCTGCGCTCGGGTTCGT 62.719 66.667 9.73 0.00 37.69 3.85
644 705 3.728373 GCTGGGATCCGGTTGGGT 61.728 66.667 5.45 0.00 37.00 4.51
648 709 1.379443 GGGATCCGGTTGGGTTTCC 60.379 63.158 5.45 0.00 38.01 3.13
708 772 2.503809 CCATTGTTTTCGCCGCCG 60.504 61.111 0.00 0.00 0.00 6.46
713 777 4.148645 GTTTTCGCCGCCGAGCTC 62.149 66.667 2.73 2.73 45.35 4.09
714 778 4.373116 TTTTCGCCGCCGAGCTCT 62.373 61.111 12.85 0.00 45.35 4.09
723 787 2.829003 CCGAGCTCTCCGTAGCCA 60.829 66.667 12.85 0.00 43.86 4.75
725 789 1.736586 CGAGCTCTCCGTAGCCATT 59.263 57.895 12.85 0.00 43.86 3.16
729 793 0.032815 GCTCTCCGTAGCCATTCTCC 59.967 60.000 0.00 0.00 36.45 3.71
737 801 2.803492 CGTAGCCATTCTCCTGGTAAGC 60.803 54.545 0.00 0.00 38.63 3.09
740 804 1.340017 GCCATTCTCCTGGTAAGCACA 60.340 52.381 0.00 0.00 38.63 4.57
747 814 0.678048 CCTGGTAAGCACAGCCTTCC 60.678 60.000 0.00 0.00 34.65 3.46
748 815 0.678048 CTGGTAAGCACAGCCTTCCC 60.678 60.000 0.00 0.00 0.00 3.97
749 816 1.745489 GGTAAGCACAGCCTTCCCG 60.745 63.158 0.00 0.00 0.00 5.14
750 817 1.745489 GTAAGCACAGCCTTCCCGG 60.745 63.158 0.00 0.00 0.00 5.73
751 818 2.966732 TAAGCACAGCCTTCCCGGG 61.967 63.158 16.85 16.85 0.00 5.73
753 820 4.660938 GCACAGCCTTCCCGGGTT 62.661 66.667 22.86 0.00 42.98 4.11
754 821 3.074281 CACAGCCTTCCCGGGTTA 58.926 61.111 22.86 9.27 42.98 2.85
755 822 1.078426 CACAGCCTTCCCGGGTTAG 60.078 63.158 22.86 18.57 42.98 2.34
756 823 2.124695 CAGCCTTCCCGGGTTAGC 60.125 66.667 22.86 20.80 42.98 3.09
760 827 1.749258 CCTTCCCGGGTTAGCTTGC 60.749 63.158 22.86 0.00 0.00 4.01
764 831 2.106683 CCCGGGTTAGCTTGCTTCG 61.107 63.158 14.18 1.10 0.00 3.79
766 833 1.635663 CCGGGTTAGCTTGCTTCGTG 61.636 60.000 0.00 0.00 0.00 4.35
768 835 1.235724 GGGTTAGCTTGCTTCGTGTT 58.764 50.000 0.00 0.00 0.00 3.32
770 837 2.143925 GGTTAGCTTGCTTCGTGTTCT 58.856 47.619 0.00 0.00 0.00 3.01
771 838 2.096218 GGTTAGCTTGCTTCGTGTTCTG 60.096 50.000 0.00 0.00 0.00 3.02
773 840 0.815213 AGCTTGCTTCGTGTTCTGCA 60.815 50.000 0.00 0.00 0.00 4.41
776 843 0.657312 TTGCTTCGTGTTCTGCAGTG 59.343 50.000 14.67 0.10 36.75 3.66
779 846 1.490693 CTTCGTGTTCTGCAGTGCGT 61.491 55.000 14.67 0.00 0.00 5.24
780 847 1.487452 TTCGTGTTCTGCAGTGCGTC 61.487 55.000 14.67 1.33 0.00 5.19
782 849 1.856012 GTGTTCTGCAGTGCGTCTC 59.144 57.895 14.67 2.06 0.00 3.36
791 858 1.067495 GCAGTGCGTCTCCTAGTCTTT 60.067 52.381 0.00 0.00 0.00 2.52
795 862 1.550524 TGCGTCTCCTAGTCTTTGCAT 59.449 47.619 0.00 0.00 0.00 3.96
796 863 2.758423 TGCGTCTCCTAGTCTTTGCATA 59.242 45.455 0.00 0.00 0.00 3.14
801 868 5.675538 GTCTCCTAGTCTTTGCATAATGGT 58.324 41.667 0.00 0.00 0.00 3.55
803 870 6.702282 GTCTCCTAGTCTTTGCATAATGGTAC 59.298 42.308 0.00 0.00 0.00 3.34
830 901 5.336690 CCCATGGATGAATTTTTGTTCGTCT 60.337 40.000 15.22 0.00 41.62 4.18
834 905 3.262135 TGAATTTTTGTTCGTCTCGCC 57.738 42.857 0.00 0.00 0.00 5.54
843 925 1.495584 TTCGTCTCGCCTGTTTGTGC 61.496 55.000 0.00 0.00 0.00 4.57
865 947 3.181513 CGGAGAGATTCAGTTGCATTGTG 60.182 47.826 0.00 0.00 0.00 3.33
866 948 4.005650 GGAGAGATTCAGTTGCATTGTGA 58.994 43.478 0.00 0.00 0.00 3.58
867 949 4.456911 GGAGAGATTCAGTTGCATTGTGAA 59.543 41.667 7.99 7.99 34.79 3.18
869 951 6.317140 GGAGAGATTCAGTTGCATTGTGAATA 59.683 38.462 15.09 0.00 40.27 1.75
870 952 7.148188 GGAGAGATTCAGTTGCATTGTGAATAA 60.148 37.037 15.09 0.00 40.27 1.40
871 953 7.759465 AGAGATTCAGTTGCATTGTGAATAAG 58.241 34.615 15.09 0.00 40.27 1.73
872 954 7.392673 AGAGATTCAGTTGCATTGTGAATAAGT 59.607 33.333 15.09 6.72 40.27 2.24
873 955 8.565896 AGATTCAGTTGCATTGTGAATAAGTA 57.434 30.769 15.09 0.00 40.27 2.24
874 956 9.182214 AGATTCAGTTGCATTGTGAATAAGTAT 57.818 29.630 15.09 0.00 40.27 2.12
880 973 9.195411 AGTTGCATTGTGAATAAGTATGTTTTG 57.805 29.630 0.00 0.00 0.00 2.44
909 1007 0.035630 GGATGTGTCTTGCTGGCTCT 60.036 55.000 0.00 0.00 0.00 4.09
910 1008 1.612726 GGATGTGTCTTGCTGGCTCTT 60.613 52.381 0.00 0.00 0.00 2.85
914 1017 0.037882 TGTCTTGCTGGCTCTTCTCG 60.038 55.000 0.00 0.00 0.00 4.04
943 1046 0.248458 CGCACCAAGTTTGTGTGACC 60.248 55.000 13.87 0.00 33.82 4.02
947 1050 3.678529 GCACCAAGTTTGTGTGACCAATT 60.679 43.478 8.71 0.00 33.82 2.32
965 1093 0.404040 TTCTGCCCCCGTCAAATTCT 59.596 50.000 0.00 0.00 0.00 2.40
976 1104 5.001232 CCCGTCAAATTCTTCTTCTTACCA 58.999 41.667 0.00 0.00 0.00 3.25
977 1105 5.648092 CCCGTCAAATTCTTCTTCTTACCAT 59.352 40.000 0.00 0.00 0.00 3.55
978 1106 6.821665 CCCGTCAAATTCTTCTTCTTACCATA 59.178 38.462 0.00 0.00 0.00 2.74
979 1107 7.011482 CCCGTCAAATTCTTCTTCTTACCATAG 59.989 40.741 0.00 0.00 0.00 2.23
980 1108 7.402640 CGTCAAATTCTTCTTCTTACCATAGC 58.597 38.462 0.00 0.00 0.00 2.97
981 1109 7.278868 CGTCAAATTCTTCTTCTTACCATAGCT 59.721 37.037 0.00 0.00 0.00 3.32
983 1111 8.543774 TCAAATTCTTCTTCTTACCATAGCTCT 58.456 33.333 0.00 0.00 0.00 4.09
993 1129 7.435068 TCTTACCATAGCTCTTGTTTTGTTC 57.565 36.000 0.00 0.00 0.00 3.18
1000 1136 5.254339 AGCTCTTGTTTTGTTCCAGAAAG 57.746 39.130 0.00 0.00 0.00 2.62
1001 1137 4.706962 AGCTCTTGTTTTGTTCCAGAAAGT 59.293 37.500 0.00 0.00 0.00 2.66
1004 1140 7.033185 GCTCTTGTTTTGTTCCAGAAAGTAAA 58.967 34.615 0.00 0.00 0.00 2.01
1005 1141 7.544217 GCTCTTGTTTTGTTCCAGAAAGTAAAA 59.456 33.333 0.00 0.00 0.00 1.52
1006 1142 9.418045 CTCTTGTTTTGTTCCAGAAAGTAAAAA 57.582 29.630 0.00 0.00 0.00 1.94
1007 1143 9.936759 TCTTGTTTTGTTCCAGAAAGTAAAAAT 57.063 25.926 0.00 0.00 0.00 1.82
1014 1150 9.744468 TTGTTCCAGAAAGTAAAAATTAGCTTC 57.256 29.630 0.00 0.00 0.00 3.86
1015 1151 8.908903 TGTTCCAGAAAGTAAAAATTAGCTTCA 58.091 29.630 0.00 0.00 0.00 3.02
1016 1152 9.399403 GTTCCAGAAAGTAAAAATTAGCTTCAG 57.601 33.333 0.00 0.00 0.00 3.02
1017 1153 8.691661 TCCAGAAAGTAAAAATTAGCTTCAGT 57.308 30.769 0.00 0.00 0.00 3.41
1018 1154 9.131791 TCCAGAAAGTAAAAATTAGCTTCAGTT 57.868 29.630 0.00 0.00 0.00 3.16
1019 1155 9.750125 CCAGAAAGTAAAAATTAGCTTCAGTTT 57.250 29.630 0.00 0.00 0.00 2.66
1023 1159 9.750125 AAAGTAAAAATTAGCTTCAGTTTGAGG 57.250 29.630 0.00 0.00 0.00 3.86
1024 1160 7.886338 AGTAAAAATTAGCTTCAGTTTGAGGG 58.114 34.615 0.00 0.00 0.00 4.30
1025 1161 5.728637 AAAATTAGCTTCAGTTTGAGGGG 57.271 39.130 0.00 0.00 0.00 4.79
1026 1162 4.388577 AATTAGCTTCAGTTTGAGGGGT 57.611 40.909 0.00 0.00 0.00 4.95
1027 1163 3.876309 TTAGCTTCAGTTTGAGGGGTT 57.124 42.857 0.00 0.00 0.00 4.11
1028 1164 2.278332 AGCTTCAGTTTGAGGGGTTC 57.722 50.000 0.00 0.00 0.00 3.62
1029 1165 1.777272 AGCTTCAGTTTGAGGGGTTCT 59.223 47.619 0.00 0.00 0.00 3.01
1030 1166 2.155279 GCTTCAGTTTGAGGGGTTCTC 58.845 52.381 0.00 0.00 42.74 2.87
1031 1167 2.784347 CTTCAGTTTGAGGGGTTCTCC 58.216 52.381 0.00 0.00 41.76 3.71
1042 1178 4.388499 GTTCTCCCGCCGGCTCAA 62.388 66.667 26.68 8.17 0.00 3.02
1043 1179 4.082523 TTCTCCCGCCGGCTCAAG 62.083 66.667 26.68 17.87 0.00 3.02
1045 1181 4.821589 CTCCCGCCGGCTCAAGTC 62.822 72.222 26.68 0.00 0.00 3.01
1047 1183 4.473520 CCCGCCGGCTCAAGTCAT 62.474 66.667 26.68 0.00 0.00 3.06
1048 1184 2.892425 CCGCCGGCTCAAGTCATC 60.892 66.667 26.68 0.00 0.00 2.92
1049 1185 2.892425 CGCCGGCTCAAGTCATCC 60.892 66.667 26.68 0.00 0.00 3.51
1050 1186 2.892425 GCCGGCTCAAGTCATCCG 60.892 66.667 22.15 0.00 41.41 4.18
1051 1187 2.892640 CCGGCTCAAGTCATCCGA 59.107 61.111 0.65 0.00 44.23 4.55
1052 1188 1.218047 CCGGCTCAAGTCATCCGAA 59.782 57.895 0.65 0.00 44.23 4.30
1053 1189 0.807667 CCGGCTCAAGTCATCCGAAG 60.808 60.000 0.65 0.00 44.23 3.79
1054 1190 0.173481 CGGCTCAAGTCATCCGAAGA 59.827 55.000 0.00 0.00 44.23 2.87
1055 1191 1.404181 CGGCTCAAGTCATCCGAAGAA 60.404 52.381 0.00 0.00 44.23 2.52
1056 1192 2.003301 GGCTCAAGTCATCCGAAGAAC 58.997 52.381 0.00 0.00 0.00 3.01
1057 1193 2.003301 GCTCAAGTCATCCGAAGAACC 58.997 52.381 0.00 0.00 0.00 3.62
1058 1194 2.263077 CTCAAGTCATCCGAAGAACCG 58.737 52.381 0.00 0.00 0.00 4.44
1066 1202 2.567049 CGAAGAACCGGACGCTCT 59.433 61.111 9.46 0.80 0.00 4.09
1067 1203 1.801913 CGAAGAACCGGACGCTCTG 60.802 63.158 9.46 0.00 0.00 3.35
1068 1204 1.289380 GAAGAACCGGACGCTCTGT 59.711 57.895 9.46 0.00 0.00 3.41
1069 1205 0.319641 GAAGAACCGGACGCTCTGTT 60.320 55.000 9.46 0.00 0.00 3.16
1070 1206 0.963962 AAGAACCGGACGCTCTGTTA 59.036 50.000 9.46 0.00 0.00 2.41
1071 1207 0.526662 AGAACCGGACGCTCTGTTAG 59.473 55.000 9.46 0.00 0.00 2.34
1088 1224 2.815647 GCGCTAGCGTTTCCTGCT 60.816 61.111 35.21 0.00 46.29 4.24
1089 1225 3.084579 CGCTAGCGTTTCCTGCTG 58.915 61.111 28.66 0.00 43.85 4.41
1090 1226 2.787915 GCTAGCGTTTCCTGCTGC 59.212 61.111 0.00 0.00 43.85 5.25
1091 1227 2.034879 GCTAGCGTTTCCTGCTGCA 61.035 57.895 0.00 0.88 43.85 4.41
1092 1228 1.577328 GCTAGCGTTTCCTGCTGCAA 61.577 55.000 3.02 0.00 43.85 4.08
1093 1229 0.166814 CTAGCGTTTCCTGCTGCAAC 59.833 55.000 3.02 0.00 43.85 4.17
1094 1230 0.533978 TAGCGTTTCCTGCTGCAACA 60.534 50.000 3.02 0.00 43.85 3.33
1095 1231 1.370900 GCGTTTCCTGCTGCAACAG 60.371 57.895 10.25 10.25 37.42 3.16
1096 1232 1.785041 GCGTTTCCTGCTGCAACAGA 61.785 55.000 18.66 2.16 40.25 3.41
1097 1233 0.040958 CGTTTCCTGCTGCAACAGAC 60.041 55.000 18.66 7.90 40.25 3.51
1098 1234 1.024271 GTTTCCTGCTGCAACAGACA 58.976 50.000 18.66 1.74 40.25 3.41
1099 1235 1.405105 GTTTCCTGCTGCAACAGACAA 59.595 47.619 18.66 7.88 40.25 3.18
1100 1236 1.024271 TTCCTGCTGCAACAGACAAC 58.976 50.000 18.66 0.00 40.25 3.32
1101 1237 1.159713 TCCTGCTGCAACAGACAACG 61.160 55.000 18.66 1.46 40.25 4.10
1102 1238 1.280746 CTGCTGCAACAGACAACGG 59.719 57.895 11.82 0.00 40.25 4.44
1454 1599 2.033448 ATCGCCAAGCCGTTCCAA 59.967 55.556 0.00 0.00 0.00 3.53
1604 1763 4.735599 GGGACGGAGGAGGGGGTT 62.736 72.222 0.00 0.00 0.00 4.11
1829 2045 2.352032 GCACTACCTGCTCCGGTCT 61.352 63.158 0.00 0.00 43.33 3.85
1933 2149 2.046864 TCGCGGAGTTCAGGGAGAG 61.047 63.158 6.13 0.00 0.00 3.20
2003 2222 0.375106 GCATGAAGCTCAAGTACGCC 59.625 55.000 0.00 0.00 41.15 5.68
2129 2348 1.004918 CGAAGCCTTTGTCTCGGGT 60.005 57.895 0.00 0.00 0.00 5.28
2215 2434 3.034635 AGATGAACGGGTTCTAGATGCT 58.965 45.455 12.33 0.00 40.14 3.79
2245 2469 4.398988 GTGTTTGTGGATGGATATCTTGCA 59.601 41.667 2.05 0.00 33.68 4.08
2266 2490 2.556144 TTGCAGTGCTTCTCATGAGT 57.444 45.000 21.92 0.00 0.00 3.41
2283 2507 8.097038 TCTCATGAGTATAACTGTTTTCTGCTT 58.903 33.333 21.92 0.00 0.00 3.91
2296 2520 3.873910 TGCTTGGGCAAATGCAGT 58.126 50.000 7.80 0.00 46.36 4.40
2326 2550 6.624352 ATTGTAGTGTTGCATATAAGCTGG 57.376 37.500 1.16 0.00 34.99 4.85
2330 2554 1.670295 TGTTGCATATAAGCTGGTGCG 59.330 47.619 1.16 0.00 45.42 5.34
2331 2555 1.939934 GTTGCATATAAGCTGGTGCGA 59.060 47.619 1.16 0.00 45.42 5.10
2334 2558 4.206477 TGCATATAAGCTGGTGCGATAT 57.794 40.909 1.16 0.00 45.42 1.63
2467 2744 9.672673 ACATATATGCTTCTACATTATGGGAAC 57.327 33.333 12.79 0.00 31.95 3.62
2468 2745 8.820933 CATATATGCTTCTACATTATGGGAACG 58.179 37.037 0.00 0.00 0.00 3.95
2469 2746 4.481368 TGCTTCTACATTATGGGAACGT 57.519 40.909 0.00 0.00 0.00 3.99
2470 2747 4.839121 TGCTTCTACATTATGGGAACGTT 58.161 39.130 0.00 0.00 0.00 3.99
2471 2748 5.250200 TGCTTCTACATTATGGGAACGTTT 58.750 37.500 0.46 0.00 0.00 3.60
2472 2749 6.408035 TGCTTCTACATTATGGGAACGTTTA 58.592 36.000 0.46 0.00 0.00 2.01
2473 2750 6.537301 TGCTTCTACATTATGGGAACGTTTAG 59.463 38.462 0.46 0.00 0.00 1.85
2474 2751 6.759827 GCTTCTACATTATGGGAACGTTTAGA 59.240 38.462 0.46 0.00 0.00 2.10
2475 2752 7.279313 GCTTCTACATTATGGGAACGTTTAGAA 59.721 37.037 0.46 7.59 0.00 2.10
2476 2753 9.158233 CTTCTACATTATGGGAACGTTTAGAAA 57.842 33.333 0.46 0.00 0.00 2.52
2477 2754 9.675464 TTCTACATTATGGGAACGTTTAGAAAT 57.325 29.630 0.46 0.00 0.00 2.17
2486 2763 8.188531 TGGGAACGTTTAGAAATATAAGAACG 57.811 34.615 0.46 5.07 43.68 3.95
2507 2784 9.790389 AGAACGTTTAGATCACTTAAGTATCAG 57.210 33.333 8.04 0.00 0.00 2.90
2508 2785 9.784680 GAACGTTTAGATCACTTAAGTATCAGA 57.215 33.333 8.04 1.60 0.00 3.27
2573 2850 6.844829 AGAGAGAGTAAATACTACTCCCTCC 58.155 44.000 15.69 3.70 45.05 4.30
2574 2851 5.623169 AGAGAGTAAATACTACTCCCTCCG 58.377 45.833 8.03 0.00 43.61 4.63
2575 2852 5.132480 AGAGAGTAAATACTACTCCCTCCGT 59.868 44.000 8.03 0.00 43.61 4.69
2576 2853 5.375773 AGAGTAAATACTACTCCCTCCGTC 58.624 45.833 8.03 0.00 43.61 4.79
2577 2854 4.468713 AGTAAATACTACTCCCTCCGTCC 58.531 47.826 0.00 0.00 34.13 4.79
2578 2855 2.378378 AATACTACTCCCTCCGTCCC 57.622 55.000 0.00 0.00 0.00 4.46
2579 2856 1.229131 ATACTACTCCCTCCGTCCCA 58.771 55.000 0.00 0.00 0.00 4.37
2580 2857 1.229131 TACTACTCCCTCCGTCCCAT 58.771 55.000 0.00 0.00 0.00 4.00
2581 2858 1.229131 ACTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
2582 2859 1.572415 ACTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
2583 2860 2.179424 ACTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
2584 2861 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
2585 2862 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
2586 2863 1.768870 CTCCCTCCGTCCCATAATGTT 59.231 52.381 0.00 0.00 0.00 2.71
2587 2864 1.488812 TCCCTCCGTCCCATAATGTTG 59.511 52.381 0.00 0.00 0.00 3.33
2588 2865 1.476833 CCCTCCGTCCCATAATGTTGG 60.477 57.143 0.00 0.00 36.46 3.77
2589 2866 1.488812 CCTCCGTCCCATAATGTTGGA 59.511 52.381 0.00 0.00 39.25 3.53
2590 2867 2.561569 CTCCGTCCCATAATGTTGGAC 58.438 52.381 0.00 0.00 44.12 4.02
2595 2872 4.776795 GTCCCATAATGTTGGACGTTTT 57.223 40.909 0.00 0.00 39.22 2.43
2596 2873 5.128992 GTCCCATAATGTTGGACGTTTTT 57.871 39.130 0.00 0.00 39.22 1.94
2634 2911 3.515330 AACGTTCTACCTTATGGGACG 57.485 47.619 0.00 6.60 38.76 4.79
2635 2912 1.753073 ACGTTCTACCTTATGGGACGG 59.247 52.381 14.69 0.00 38.76 4.79
2636 2913 2.026641 CGTTCTACCTTATGGGACGGA 58.973 52.381 0.00 0.00 38.76 4.69
2637 2914 2.034305 CGTTCTACCTTATGGGACGGAG 59.966 54.545 0.00 0.00 38.76 4.63
2638 2915 2.364647 GTTCTACCTTATGGGACGGAGG 59.635 54.545 0.00 0.00 38.76 4.30
2639 2916 1.133262 TCTACCTTATGGGACGGAGGG 60.133 57.143 0.00 0.00 38.76 4.30
2640 2917 0.935942 TACCTTATGGGACGGAGGGA 59.064 55.000 0.00 0.00 38.76 4.20
2641 2918 0.398664 ACCTTATGGGACGGAGGGAG 60.399 60.000 0.00 0.00 38.76 4.30
2650 2927 2.173569 GGGACGGAGGGAGTAACTAGTA 59.826 54.545 0.00 0.00 0.00 1.82
2654 2931 4.522114 ACGGAGGGAGTAACTAGTAAGAC 58.478 47.826 0.00 0.00 0.00 3.01
2691 2968 4.534103 ACAAGCTCTAGGAAGAAATCAGGT 59.466 41.667 0.00 0.00 0.00 4.00
2694 2971 4.405358 AGCTCTAGGAAGAAATCAGGTCAG 59.595 45.833 0.00 0.00 0.00 3.51
2702 2979 6.441924 AGGAAGAAATCAGGTCAGTAGATTCA 59.558 38.462 0.00 0.00 31.21 2.57
2742 3019 2.866762 GCTCTCTACGGCATTTTACAGG 59.133 50.000 0.00 0.00 0.00 4.00
2743 3020 3.430374 GCTCTCTACGGCATTTTACAGGA 60.430 47.826 0.00 0.00 0.00 3.86
2744 3021 4.363999 CTCTCTACGGCATTTTACAGGAG 58.636 47.826 0.00 0.00 0.00 3.69
2745 3022 4.021229 TCTCTACGGCATTTTACAGGAGA 58.979 43.478 0.00 0.00 0.00 3.71
2746 3023 4.464951 TCTCTACGGCATTTTACAGGAGAA 59.535 41.667 0.00 0.00 0.00 2.87
2747 3024 5.128827 TCTCTACGGCATTTTACAGGAGAAT 59.871 40.000 0.00 0.00 0.00 2.40
2748 3025 5.741011 TCTACGGCATTTTACAGGAGAATT 58.259 37.500 0.00 0.00 0.00 2.17
2749 3026 4.965119 ACGGCATTTTACAGGAGAATTC 57.035 40.909 0.00 0.00 0.00 2.17
2750 3027 4.331968 ACGGCATTTTACAGGAGAATTCA 58.668 39.130 8.44 0.00 0.00 2.57
2751 3028 4.764823 ACGGCATTTTACAGGAGAATTCAA 59.235 37.500 8.44 0.00 0.00 2.69
2752 3029 5.418840 ACGGCATTTTACAGGAGAATTCAAT 59.581 36.000 8.44 0.00 0.00 2.57
2753 3030 6.071391 ACGGCATTTTACAGGAGAATTCAATT 60.071 34.615 8.44 0.00 0.00 2.32
2754 3031 6.813152 CGGCATTTTACAGGAGAATTCAATTT 59.187 34.615 8.44 0.00 0.00 1.82
2755 3032 7.331687 CGGCATTTTACAGGAGAATTCAATTTT 59.668 33.333 8.44 0.00 0.00 1.82
2756 3033 9.651913 GGCATTTTACAGGAGAATTCAATTTTA 57.348 29.630 8.44 0.00 0.00 1.52
2763 3040 8.000780 ACAGGAGAATTCAATTTTATGGTAGC 57.999 34.615 8.44 0.00 0.00 3.58
2764 3041 7.836183 ACAGGAGAATTCAATTTTATGGTAGCT 59.164 33.333 8.44 0.00 0.00 3.32
2765 3042 8.689972 CAGGAGAATTCAATTTTATGGTAGCTT 58.310 33.333 8.44 0.00 0.00 3.74
2766 3043 9.259832 AGGAGAATTCAATTTTATGGTAGCTTT 57.740 29.630 8.44 0.00 0.00 3.51
2767 3044 9.875691 GGAGAATTCAATTTTATGGTAGCTTTT 57.124 29.630 8.44 0.00 0.00 2.27
2794 3071 0.919710 AGCTATTGACCCCCAAGTCC 59.080 55.000 0.00 0.00 38.31 3.85
2810 3087 7.062957 CCCCAAGTCCATTTCATCTATTTACT 58.937 38.462 0.00 0.00 0.00 2.24
2961 3249 9.754382 ACAACTAGAACTAAGAAACATAAACGA 57.246 29.630 0.00 0.00 0.00 3.85
2963 3251 8.445193 ACTAGAACTAAGAAACATAAACGACG 57.555 34.615 0.00 0.00 0.00 5.12
2964 3252 8.292448 ACTAGAACTAAGAAACATAAACGACGA 58.708 33.333 0.00 0.00 0.00 4.20
2965 3253 9.286946 CTAGAACTAAGAAACATAAACGACGAT 57.713 33.333 0.00 0.00 0.00 3.73
2966 3254 7.950236 AGAACTAAGAAACATAAACGACGATG 58.050 34.615 0.00 0.00 0.00 3.84
2967 3255 6.091123 ACTAAGAAACATAAACGACGATGC 57.909 37.500 0.00 0.00 0.00 3.91
2968 3256 5.636121 ACTAAGAAACATAAACGACGATGCA 59.364 36.000 0.00 0.00 0.00 3.96
2969 3257 5.545658 AAGAAACATAAACGACGATGCAT 57.454 34.783 0.00 0.00 0.00 3.96
3016 3305 1.153745 CGAACGGCCTCCAAGAGAG 60.154 63.158 0.00 0.00 42.83 3.20
3064 3353 2.200373 ACCGATAACCTGCAAAAGCT 57.800 45.000 0.00 0.00 0.00 3.74
3066 3355 3.681593 ACCGATAACCTGCAAAAGCTAA 58.318 40.909 0.00 0.00 0.00 3.09
3068 3357 5.433526 ACCGATAACCTGCAAAAGCTAATA 58.566 37.500 0.00 0.00 0.00 0.98
3069 3358 5.883673 ACCGATAACCTGCAAAAGCTAATAA 59.116 36.000 0.00 0.00 0.00 1.40
3070 3359 6.376018 ACCGATAACCTGCAAAAGCTAATAAA 59.624 34.615 0.00 0.00 0.00 1.40
3071 3360 6.691388 CCGATAACCTGCAAAAGCTAATAAAC 59.309 38.462 0.00 0.00 0.00 2.01
3072 3361 7.415206 CCGATAACCTGCAAAAGCTAATAAACT 60.415 37.037 0.00 0.00 0.00 2.66
3073 3362 7.640240 CGATAACCTGCAAAAGCTAATAAACTC 59.360 37.037 0.00 0.00 0.00 3.01
3074 3363 5.644977 ACCTGCAAAAGCTAATAAACTCC 57.355 39.130 0.00 0.00 0.00 3.85
3075 3364 4.156008 ACCTGCAAAAGCTAATAAACTCCG 59.844 41.667 0.00 0.00 0.00 4.63
3076 3365 4.394920 CCTGCAAAAGCTAATAAACTCCGA 59.605 41.667 0.00 0.00 0.00 4.55
3078 3367 5.938322 TGCAAAAGCTAATAAACTCCGAAG 58.062 37.500 0.00 0.00 0.00 3.79
3079 3368 4.793731 GCAAAAGCTAATAAACTCCGAAGC 59.206 41.667 0.00 0.00 0.00 3.86
3080 3369 5.332707 CAAAAGCTAATAAACTCCGAAGCC 58.667 41.667 0.00 0.00 0.00 4.35
3082 3371 4.423625 AGCTAATAAACTCCGAAGCCAT 57.576 40.909 0.00 0.00 0.00 4.40
3083 3372 4.381411 AGCTAATAAACTCCGAAGCCATC 58.619 43.478 0.00 0.00 0.00 3.51
3086 3375 5.106908 GCTAATAAACTCCGAAGCCATCATC 60.107 44.000 0.00 0.00 0.00 2.92
3087 3376 2.044123 AAACTCCGAAGCCATCATCC 57.956 50.000 0.00 0.00 0.00 3.51
3088 3377 1.207791 AACTCCGAAGCCATCATCCT 58.792 50.000 0.00 0.00 0.00 3.24
3089 3378 0.467384 ACTCCGAAGCCATCATCCTG 59.533 55.000 0.00 0.00 0.00 3.86
3090 3379 0.250209 CTCCGAAGCCATCATCCTGG 60.250 60.000 0.00 0.00 39.45 4.45
3091 3380 1.228063 CCGAAGCCATCATCCTGGG 60.228 63.158 0.00 0.00 36.75 4.45
3093 3382 1.152368 GAAGCCATCATCCTGGGGG 59.848 63.158 0.00 0.00 36.75 5.40
3094 3383 2.990994 GAAGCCATCATCCTGGGGGC 62.991 65.000 0.00 0.00 44.92 5.80
3096 3385 2.156098 GCCATCATCCTGGGGGCTA 61.156 63.158 0.00 0.00 41.39 3.93
3097 3386 1.763770 CCATCATCCTGGGGGCTAC 59.236 63.158 0.00 0.00 32.28 3.58
3098 3387 1.061905 CCATCATCCTGGGGGCTACA 61.062 60.000 0.00 0.00 32.28 2.74
3099 3388 0.846015 CATCATCCTGGGGGCTACAA 59.154 55.000 0.00 0.00 0.00 2.41
3100 3389 1.215173 CATCATCCTGGGGGCTACAAA 59.785 52.381 0.00 0.00 0.00 2.83
3101 3390 0.623723 TCATCCTGGGGGCTACAAAC 59.376 55.000 0.00 0.00 0.00 2.93
3104 3393 4.743018 CTGGGGGCTACAAACCAG 57.257 61.111 0.00 0.00 43.87 4.00
3105 3394 1.000896 CTGGGGGCTACAAACCAGG 60.001 63.158 0.00 0.00 45.21 4.45
3106 3395 1.776710 TGGGGGCTACAAACCAGGT 60.777 57.895 0.00 0.00 0.00 4.00
3107 3396 1.001269 GGGGGCTACAAACCAGGTC 60.001 63.158 0.00 0.00 0.00 3.85
3108 3397 1.498176 GGGGGCTACAAACCAGGTCT 61.498 60.000 0.00 0.00 0.00 3.85
3109 3398 0.035343 GGGGCTACAAACCAGGTCTC 60.035 60.000 0.00 0.00 0.00 3.36
3110 3399 0.035343 GGGCTACAAACCAGGTCTCC 60.035 60.000 0.00 0.00 0.00 3.71
3111 3400 0.690762 GGCTACAAACCAGGTCTCCA 59.309 55.000 0.00 0.00 0.00 3.86
3112 3401 1.339151 GGCTACAAACCAGGTCTCCAG 60.339 57.143 0.00 0.00 0.00 3.86
3113 3402 1.339151 GCTACAAACCAGGTCTCCAGG 60.339 57.143 0.00 0.00 36.18 4.45
3114 3403 2.257207 CTACAAACCAGGTCTCCAGGA 58.743 52.381 4.28 0.00 34.08 3.86
3115 3404 1.518367 ACAAACCAGGTCTCCAGGAA 58.482 50.000 4.28 0.00 34.08 3.36
3116 3405 1.850345 ACAAACCAGGTCTCCAGGAAA 59.150 47.619 4.28 0.00 34.08 3.13
3117 3406 2.447047 ACAAACCAGGTCTCCAGGAAAT 59.553 45.455 4.28 0.00 34.08 2.17
3118 3407 2.821969 CAAACCAGGTCTCCAGGAAATG 59.178 50.000 4.28 0.00 34.08 2.32
3132 3421 6.995511 CCAGGAAATGGTAATACGAAAGAA 57.004 37.500 0.00 0.00 44.91 2.52
3133 3422 7.385778 CCAGGAAATGGTAATACGAAAGAAA 57.614 36.000 0.00 0.00 44.91 2.52
3134 3423 7.248437 CCAGGAAATGGTAATACGAAAGAAAC 58.752 38.462 0.00 0.00 44.91 2.78
3135 3424 7.248437 CAGGAAATGGTAATACGAAAGAAACC 58.752 38.462 0.00 0.00 0.00 3.27
3136 3425 6.093082 AGGAAATGGTAATACGAAAGAAACCG 59.907 38.462 0.00 0.00 0.00 4.44
3137 3426 6.092533 GGAAATGGTAATACGAAAGAAACCGA 59.907 38.462 0.00 0.00 0.00 4.69
3138 3427 7.201670 GGAAATGGTAATACGAAAGAAACCGAT 60.202 37.037 0.00 0.00 0.00 4.18
3139 3428 8.721019 AAATGGTAATACGAAAGAAACCGATA 57.279 30.769 0.00 0.00 0.00 2.92
3140 3429 8.721019 AATGGTAATACGAAAGAAACCGATAA 57.279 30.769 0.00 0.00 0.00 1.75
3141 3430 7.524294 TGGTAATACGAAAGAAACCGATAAC 57.476 36.000 0.00 0.00 0.00 1.89
3142 3431 6.534793 TGGTAATACGAAAGAAACCGATAACC 59.465 38.462 0.00 0.00 0.00 2.85
3143 3432 6.758416 GGTAATACGAAAGAAACCGATAACCT 59.242 38.462 0.00 0.00 0.00 3.50
3144 3433 6.657836 AATACGAAAGAAACCGATAACCTG 57.342 37.500 0.00 0.00 0.00 4.00
3145 3434 2.740447 ACGAAAGAAACCGATAACCTGC 59.260 45.455 0.00 0.00 0.00 4.85
3146 3435 2.739913 CGAAAGAAACCGATAACCTGCA 59.260 45.455 0.00 0.00 0.00 4.41
3147 3436 3.187637 CGAAAGAAACCGATAACCTGCAA 59.812 43.478 0.00 0.00 0.00 4.08
3148 3437 4.319911 CGAAAGAAACCGATAACCTGCAAA 60.320 41.667 0.00 0.00 0.00 3.68
3149 3438 5.523438 AAAGAAACCGATAACCTGCAAAA 57.477 34.783 0.00 0.00 0.00 2.44
3150 3439 4.766404 AGAAACCGATAACCTGCAAAAG 57.234 40.909 0.00 0.00 0.00 2.27
3151 3440 3.057526 AGAAACCGATAACCTGCAAAAGC 60.058 43.478 0.00 0.00 0.00 3.51
3180 3469 1.228063 CGAAGCCATCATCCTGGGG 60.228 63.158 0.00 0.00 36.75 4.96
3222 3511 7.242914 CCAGGAAATGGTAATACGAAAGTAC 57.757 40.000 0.00 0.00 46.55 2.73
3338 3627 4.220382 CAGAGAGTTCCACTGAAGATCACT 59.780 45.833 0.00 0.00 34.07 3.41
3347 3636 2.836372 ACTGAAGATCACTCAGCCATGA 59.164 45.455 19.50 0.00 35.08 3.07
3405 3694 5.221106 CCTTGAAGACTTCACTTGCAATCAA 60.221 40.000 17.52 2.84 39.87 2.57
3408 3697 5.357878 TGAAGACTTCACTTGCAATCAACTT 59.642 36.000 13.99 0.11 34.08 2.66
3450 3739 8.352201 CCACTTCATTGTTCTTTGTCTTTATGA 58.648 33.333 0.00 0.00 0.00 2.15
3451 3740 9.903682 CACTTCATTGTTCTTTGTCTTTATGAT 57.096 29.630 0.00 0.00 0.00 2.45
3519 3808 6.868339 TCATATTAACAGTAGCACATGGATCG 59.132 38.462 0.00 0.00 0.00 3.69
3528 3817 1.656652 CACATGGATCGGTCACCTTC 58.343 55.000 0.00 0.00 0.00 3.46
3633 3953 5.965922 TGAACAGGTCATGTACACTATCAG 58.034 41.667 0.00 0.00 43.00 2.90
3667 3987 7.272244 TGTTAGACTGAAAGAACACTTCATGA 58.728 34.615 0.00 0.00 37.43 3.07
3689 4009 8.545420 CATGATATTCCAAAGCAATTTAGCAAC 58.455 33.333 0.00 0.00 36.85 4.17
3695 4015 4.148696 CCAAAGCAATTTAGCAACAGAACG 59.851 41.667 0.00 0.00 36.85 3.95
3697 4017 1.985684 GCAATTTAGCAACAGAACGCC 59.014 47.619 0.00 0.00 0.00 5.68
3706 4026 0.032952 AACAGAACGCCGCAAGAGTA 59.967 50.000 0.00 0.00 43.02 2.59
3732 4052 9.593565 AAATGATTTATAGATTCCTTCCTTCCC 57.406 33.333 0.00 0.00 0.00 3.97
3739 4059 5.330648 AGATTCCTTCCTTCCCCAATATG 57.669 43.478 0.00 0.00 0.00 1.78
3740 4060 4.984268 AGATTCCTTCCTTCCCCAATATGA 59.016 41.667 0.00 0.00 0.00 2.15
3741 4061 5.436374 AGATTCCTTCCTTCCCCAATATGAA 59.564 40.000 0.00 0.00 0.00 2.57
3795 4116 7.003402 AGAAGATTCTCATTAGGTAGGATGC 57.997 40.000 0.00 0.00 29.94 3.91
3802 4123 9.732130 ATTCTCATTAGGTAGGATGCTATTTTC 57.268 33.333 0.00 0.00 0.00 2.29
3816 4137 3.065925 GCTATTTTCTAAGCACCAGCCAG 59.934 47.826 0.00 0.00 43.56 4.85
3821 4142 4.778213 TTCTAAGCACCAGCCAGATAAT 57.222 40.909 0.00 0.00 43.56 1.28
3838 4159 7.445945 CCAGATAATCACTTTAACTCTAGGGG 58.554 42.308 0.00 0.00 0.00 4.79
3848 4169 6.444171 ACTTTAACTCTAGGGGCATCTTAACT 59.556 38.462 0.00 0.00 0.00 2.24
3896 4217 3.359033 TGATCCCATTTTCAGCCAAGAG 58.641 45.455 0.00 0.00 0.00 2.85
3988 4311 5.878116 TGTCAAAACTACTACAGCACAAACT 59.122 36.000 0.00 0.00 0.00 2.66
4000 4323 9.726438 ACTACAGCACAAACTTCTTTAATATCT 57.274 29.630 0.00 0.00 0.00 1.98
4005 4328 7.669722 AGCACAAACTTCTTTAATATCTTCCCA 59.330 33.333 0.00 0.00 0.00 4.37
4022 4345 4.569719 TCCCACAACTCTAAAGAATCCC 57.430 45.455 0.00 0.00 0.00 3.85
4045 4368 5.531287 CCCATACAAGGTCCTTATAAACTGC 59.469 44.000 3.08 0.00 0.00 4.40
4050 4373 4.222124 AGGTCCTTATAAACTGCACCTG 57.778 45.455 0.00 0.00 31.37 4.00
4053 4376 5.665812 AGGTCCTTATAAACTGCACCTGATA 59.334 40.000 0.00 0.00 31.37 2.15
4056 4379 6.483640 GTCCTTATAAACTGCACCTGATAAGG 59.516 42.308 18.44 18.44 43.70 2.69
4058 4381 2.887151 AAACTGCACCTGATAAGGCT 57.113 45.000 0.00 0.00 0.00 4.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 5.673568 GCGCTCAACATGTAGCTTATGAAAA 60.674 40.000 16.54 2.32 36.56 2.29
28 29 2.609002 TGCGCTCAACATGTAGCTTATG 59.391 45.455 16.54 0.00 36.56 1.90
32 33 1.354337 CGTGCGCTCAACATGTAGCT 61.354 55.000 16.54 0.00 36.56 3.32
51 52 2.804090 GCGACGGACGTGACCTTC 60.804 66.667 0.53 0.00 44.60 3.46
86 87 1.963515 CACCTGGACCTTTTCCCTTTG 59.036 52.381 0.00 0.00 45.17 2.77
92 94 2.140717 CACGTACACCTGGACCTTTTC 58.859 52.381 0.00 0.00 0.00 2.29
98 100 0.666577 GCAGACACGTACACCTGGAC 60.667 60.000 0.00 0.00 0.00 4.02
100 102 0.037326 ATGCAGACACGTACACCTGG 60.037 55.000 0.00 0.00 0.00 4.45
113 115 0.452987 GTGGTACGTCCGTATGCAGA 59.547 55.000 2.56 0.00 39.52 4.26
136 138 2.806198 CGTGGCCATTTGCTTGCG 60.806 61.111 9.72 0.00 40.92 4.85
142 144 0.606401 ACAGAGGACGTGGCCATTTG 60.606 55.000 9.72 4.64 0.00 2.32
165 167 2.125461 TGAGCACTGATAAGCGATCG 57.875 50.000 11.69 11.69 37.38 3.69
176 178 1.998315 CCACGAGAAAGATGAGCACTG 59.002 52.381 0.00 0.00 0.00 3.66
195 199 4.439700 GCTAATTTCCCCTTCGCTTTTACC 60.440 45.833 0.00 0.00 0.00 2.85
319 353 4.495184 CGCACGGGCCTACTTTAATTTTAG 60.495 45.833 2.82 0.00 36.38 1.85
323 357 1.375551 CGCACGGGCCTACTTTAATT 58.624 50.000 2.82 0.00 36.38 1.40
325 359 1.742510 GCGCACGGGCCTACTTTAA 60.743 57.895 2.82 0.00 36.38 1.52
326 360 2.125431 GCGCACGGGCCTACTTTA 60.125 61.111 2.82 0.00 36.38 1.85
399 441 4.351054 CTGGGACTGGGTGTGGGC 62.351 72.222 0.00 0.00 0.00 5.36
400 442 2.854032 ACTGGGACTGGGTGTGGG 60.854 66.667 0.00 0.00 0.00 4.61
401 443 2.431683 CACTGGGACTGGGTGTGG 59.568 66.667 0.00 0.00 0.00 4.17
402 444 2.431683 CCACTGGGACTGGGTGTG 59.568 66.667 0.00 0.00 35.59 3.82
403 445 2.039831 ACCACTGGGACTGGGTGT 60.040 61.111 0.00 0.00 38.05 4.16
404 446 2.116983 CTCACCACTGGGACTGGGTG 62.117 65.000 0.00 3.33 43.90 4.61
411 453 2.848679 TGCTGCTCACCACTGGGA 60.849 61.111 0.00 0.00 38.05 4.37
476 518 4.058124 GTGGTTTGCTTTGGAGAATTTCC 58.942 43.478 0.00 1.09 46.98 3.13
484 526 2.158475 AGAGGATGTGGTTTGCTTTGGA 60.158 45.455 0.00 0.00 0.00 3.53
488 530 2.519013 GGAAGAGGATGTGGTTTGCTT 58.481 47.619 0.00 0.00 0.00 3.91
537 584 0.745845 CTTGGATTCGGGCAGTGAGG 60.746 60.000 0.00 0.00 0.00 3.86
571 619 3.117171 CACACGAGCAGGAGCAGC 61.117 66.667 0.00 0.00 45.49 5.25
572 620 2.433838 CCACACGAGCAGGAGCAG 60.434 66.667 0.00 0.00 45.49 4.24
574 622 4.008933 ACCCACACGAGCAGGAGC 62.009 66.667 0.00 0.00 42.56 4.70
575 623 2.047844 CACCCACACGAGCAGGAG 60.048 66.667 0.00 0.00 0.00 3.69
576 624 2.842462 ACACCCACACGAGCAGGA 60.842 61.111 0.00 0.00 0.00 3.86
577 625 2.666190 CACACCCACACGAGCAGG 60.666 66.667 0.00 0.00 0.00 4.85
578 626 3.349006 GCACACCCACACGAGCAG 61.349 66.667 0.00 0.00 0.00 4.24
579 627 4.927782 GGCACACCCACACGAGCA 62.928 66.667 0.00 0.00 0.00 4.26
581 629 4.602259 ACGGCACACCCACACGAG 62.602 66.667 0.00 0.00 0.00 4.18
582 630 4.595538 GACGGCACACCCACACGA 62.596 66.667 0.00 0.00 0.00 4.35
584 632 2.974935 TAACGACGGCACACCCACAC 62.975 60.000 0.00 0.00 0.00 3.82
585 633 2.702751 CTAACGACGGCACACCCACA 62.703 60.000 0.00 0.00 0.00 4.17
586 634 2.025418 CTAACGACGGCACACCCAC 61.025 63.158 0.00 0.00 0.00 4.61
587 635 2.340809 CTAACGACGGCACACCCA 59.659 61.111 0.00 0.00 0.00 4.51
588 636 1.735559 GACTAACGACGGCACACCC 60.736 63.158 0.00 0.00 0.00 4.61
591 639 1.372499 GCAGACTAACGACGGCACA 60.372 57.895 0.00 0.00 0.00 4.57
596 644 2.209076 CGAGCGCAGACTAACGACG 61.209 63.158 11.47 0.00 0.00 5.12
619 677 3.917760 GGATCCCAGCTCCGGACG 61.918 72.222 0.00 0.00 30.39 4.79
679 740 1.755179 AACAATGGGCCGAGATGAAG 58.245 50.000 9.83 0.00 0.00 3.02
690 751 2.126110 GGCGGCGAAAACAATGGG 60.126 61.111 12.98 0.00 0.00 4.00
708 772 1.000717 GAGAATGGCTACGGAGAGCTC 60.001 57.143 5.27 5.27 42.43 4.09
713 777 0.390860 CCAGGAGAATGGCTACGGAG 59.609 60.000 0.00 0.00 32.48 4.63
714 778 0.325296 ACCAGGAGAATGGCTACGGA 60.325 55.000 0.00 0.00 44.80 4.69
723 787 1.065126 GGCTGTGCTTACCAGGAGAAT 60.065 52.381 0.00 0.00 0.00 2.40
725 789 0.545309 AGGCTGTGCTTACCAGGAGA 60.545 55.000 0.00 0.00 0.00 3.71
729 793 0.678048 GGGAAGGCTGTGCTTACCAG 60.678 60.000 0.00 0.00 33.81 4.00
737 801 1.078426 CTAACCCGGGAAGGCTGTG 60.078 63.158 32.02 4.02 39.21 3.66
740 804 1.923909 AAGCTAACCCGGGAAGGCT 60.924 57.895 32.02 27.37 39.21 4.58
747 814 1.375523 ACGAAGCAAGCTAACCCGG 60.376 57.895 0.00 0.00 0.00 5.73
748 815 0.949105 ACACGAAGCAAGCTAACCCG 60.949 55.000 0.00 0.14 0.00 5.28
749 816 1.197036 GAACACGAAGCAAGCTAACCC 59.803 52.381 0.00 0.00 0.00 4.11
750 817 2.096218 CAGAACACGAAGCAAGCTAACC 60.096 50.000 0.00 0.00 0.00 2.85
751 818 2.663063 GCAGAACACGAAGCAAGCTAAC 60.663 50.000 0.00 0.00 0.00 2.34
752 819 1.531149 GCAGAACACGAAGCAAGCTAA 59.469 47.619 0.00 0.00 0.00 3.09
753 820 1.148310 GCAGAACACGAAGCAAGCTA 58.852 50.000 0.00 0.00 0.00 3.32
754 821 0.815213 TGCAGAACACGAAGCAAGCT 60.815 50.000 0.00 0.00 33.48 3.74
755 822 0.385223 CTGCAGAACACGAAGCAAGC 60.385 55.000 8.42 0.00 36.44 4.01
756 823 0.940126 ACTGCAGAACACGAAGCAAG 59.060 50.000 23.35 0.00 36.44 4.01
760 827 1.202568 CGCACTGCAGAACACGAAG 59.797 57.895 23.35 0.58 0.00 3.79
764 831 1.560860 GGAGACGCACTGCAGAACAC 61.561 60.000 23.35 7.59 36.93 3.32
766 833 0.243907 TAGGAGACGCACTGCAGAAC 59.756 55.000 23.35 10.77 39.46 3.01
768 835 0.609406 ACTAGGAGACGCACTGCAGA 60.609 55.000 23.35 0.00 39.46 4.26
770 837 0.609406 AGACTAGGAGACGCACTGCA 60.609 55.000 1.11 0.00 39.46 4.41
771 838 0.528470 AAGACTAGGAGACGCACTGC 59.472 55.000 0.00 0.00 37.22 4.40
773 840 1.067495 GCAAAGACTAGGAGACGCACT 60.067 52.381 0.00 0.00 0.00 4.40
776 843 2.301577 ATGCAAAGACTAGGAGACGC 57.698 50.000 0.00 0.00 0.00 5.19
779 846 5.957771 ACCATTATGCAAAGACTAGGAGA 57.042 39.130 0.00 0.00 0.00 3.71
780 847 6.821388 AGTACCATTATGCAAAGACTAGGAG 58.179 40.000 0.00 0.00 0.00 3.69
782 849 6.929606 GGTAGTACCATTATGCAAAGACTAGG 59.070 42.308 14.82 0.00 38.42 3.02
801 868 7.148154 CGAACAAAAATTCATCCATGGGTAGTA 60.148 37.037 13.02 0.00 0.00 1.82
803 870 6.035843 CGAACAAAAATTCATCCATGGGTAG 58.964 40.000 13.02 2.07 0.00 3.18
834 905 2.414481 CTGAATCTCTCCGCACAAACAG 59.586 50.000 0.00 0.00 0.00 3.16
843 925 3.005554 ACAATGCAACTGAATCTCTCCG 58.994 45.455 6.19 0.00 0.00 4.63
865 947 7.903431 CCAACGCTAGACAAAACATACTTATTC 59.097 37.037 0.00 0.00 0.00 1.75
866 948 7.604927 TCCAACGCTAGACAAAACATACTTATT 59.395 33.333 0.00 0.00 0.00 1.40
867 949 7.101054 TCCAACGCTAGACAAAACATACTTAT 58.899 34.615 0.00 0.00 0.00 1.73
869 951 5.302360 TCCAACGCTAGACAAAACATACTT 58.698 37.500 0.00 0.00 0.00 2.24
870 952 4.890088 TCCAACGCTAGACAAAACATACT 58.110 39.130 0.00 0.00 0.00 2.12
871 953 5.121768 ACATCCAACGCTAGACAAAACATAC 59.878 40.000 0.00 0.00 0.00 2.39
872 954 5.121611 CACATCCAACGCTAGACAAAACATA 59.878 40.000 0.00 0.00 0.00 2.29
873 955 4.072131 ACATCCAACGCTAGACAAAACAT 58.928 39.130 0.00 0.00 0.00 2.71
874 956 3.249799 CACATCCAACGCTAGACAAAACA 59.750 43.478 0.00 0.00 0.00 2.83
880 973 2.656560 AGACACATCCAACGCTAGAC 57.343 50.000 0.00 0.00 0.00 2.59
909 1007 3.039588 GCGCAAACGACCCGAGAA 61.040 61.111 0.30 0.00 43.93 2.87
910 1008 4.287781 TGCGCAAACGACCCGAGA 62.288 61.111 8.16 0.00 43.93 4.04
914 1017 3.536498 CTTGGTGCGCAAACGACCC 62.536 63.158 14.00 8.91 43.93 4.46
943 1046 1.185315 ATTTGACGGGGGCAGAATTG 58.815 50.000 0.00 0.00 0.00 2.32
947 1050 0.404040 AAGAATTTGACGGGGGCAGA 59.596 50.000 0.00 0.00 0.00 4.26
965 1093 7.719633 ACAAAACAAGAGCTATGGTAAGAAGAA 59.280 33.333 0.00 0.00 0.00 2.52
976 1104 6.547510 ACTTTCTGGAACAAAACAAGAGCTAT 59.452 34.615 0.00 0.00 38.70 2.97
977 1105 5.885912 ACTTTCTGGAACAAAACAAGAGCTA 59.114 36.000 0.00 0.00 38.70 3.32
978 1106 4.706962 ACTTTCTGGAACAAAACAAGAGCT 59.293 37.500 0.00 0.00 38.70 4.09
979 1107 4.998788 ACTTTCTGGAACAAAACAAGAGC 58.001 39.130 0.00 0.00 38.70 4.09
980 1108 8.980143 TTTTACTTTCTGGAACAAAACAAGAG 57.020 30.769 0.00 0.00 38.70 2.85
981 1109 9.936759 ATTTTTACTTTCTGGAACAAAACAAGA 57.063 25.926 0.00 0.00 38.70 3.02
993 1129 9.750125 AAACTGAAGCTAATTTTTACTTTCTGG 57.250 29.630 0.00 0.00 0.00 3.86
1000 1136 7.090808 CCCCTCAAACTGAAGCTAATTTTTAC 58.909 38.462 0.00 0.00 0.00 2.01
1001 1137 6.780522 ACCCCTCAAACTGAAGCTAATTTTTA 59.219 34.615 0.00 0.00 0.00 1.52
1004 1140 4.740902 ACCCCTCAAACTGAAGCTAATTT 58.259 39.130 0.00 0.00 0.00 1.82
1005 1141 4.388577 ACCCCTCAAACTGAAGCTAATT 57.611 40.909 0.00 0.00 0.00 1.40
1006 1142 4.043435 AGAACCCCTCAAACTGAAGCTAAT 59.957 41.667 0.00 0.00 0.00 1.73
1007 1143 3.394606 AGAACCCCTCAAACTGAAGCTAA 59.605 43.478 0.00 0.00 0.00 3.09
1008 1144 2.979678 AGAACCCCTCAAACTGAAGCTA 59.020 45.455 0.00 0.00 0.00 3.32
1009 1145 1.777272 AGAACCCCTCAAACTGAAGCT 59.223 47.619 0.00 0.00 0.00 3.74
1010 1146 2.155279 GAGAACCCCTCAAACTGAAGC 58.845 52.381 0.00 0.00 41.58 3.86
1011 1147 2.784347 GGAGAACCCCTCAAACTGAAG 58.216 52.381 0.00 0.00 43.76 3.02
1012 1148 2.951229 GGAGAACCCCTCAAACTGAA 57.049 50.000 0.00 0.00 43.76 3.02
1025 1161 4.388499 TTGAGCCGGCGGGAGAAC 62.388 66.667 29.48 10.53 34.06 3.01
1026 1162 4.082523 CTTGAGCCGGCGGGAGAA 62.083 66.667 29.48 9.49 34.06 2.87
1028 1164 4.821589 GACTTGAGCCGGCGGGAG 62.822 72.222 29.48 21.12 34.06 4.30
1030 1166 4.473520 ATGACTTGAGCCGGCGGG 62.474 66.667 29.48 13.14 0.00 6.13
1031 1167 2.892425 GATGACTTGAGCCGGCGG 60.892 66.667 24.35 24.35 0.00 6.13
1032 1168 2.892425 GGATGACTTGAGCCGGCG 60.892 66.667 23.20 9.47 0.00 6.46
1033 1169 2.852495 TTCGGATGACTTGAGCCGGC 62.852 60.000 21.89 21.89 43.71 6.13
1034 1170 0.807667 CTTCGGATGACTTGAGCCGG 60.808 60.000 0.00 0.00 43.71 6.13
1035 1171 0.173481 TCTTCGGATGACTTGAGCCG 59.827 55.000 0.00 0.00 44.83 5.52
1036 1172 2.003301 GTTCTTCGGATGACTTGAGCC 58.997 52.381 0.00 0.00 0.00 4.70
1037 1173 2.003301 GGTTCTTCGGATGACTTGAGC 58.997 52.381 0.00 0.00 0.00 4.26
1038 1174 2.263077 CGGTTCTTCGGATGACTTGAG 58.737 52.381 0.00 0.00 0.00 3.02
1039 1175 2.363788 CGGTTCTTCGGATGACTTGA 57.636 50.000 0.00 0.00 0.00 3.02
1049 1185 1.801913 CAGAGCGTCCGGTTCTTCG 60.802 63.158 0.00 1.40 33.45 3.79
1050 1186 0.319641 AACAGAGCGTCCGGTTCTTC 60.320 55.000 0.00 0.00 33.45 2.87
1051 1187 0.963962 TAACAGAGCGTCCGGTTCTT 59.036 50.000 0.00 0.00 33.45 2.52
1052 1188 0.526662 CTAACAGAGCGTCCGGTTCT 59.473 55.000 0.00 0.00 36.54 3.01
1053 1189 1.077089 GCTAACAGAGCGTCCGGTTC 61.077 60.000 0.00 0.00 42.62 3.62
1054 1190 1.080025 GCTAACAGAGCGTCCGGTT 60.080 57.895 0.00 0.00 42.62 4.44
1055 1191 2.572284 GCTAACAGAGCGTCCGGT 59.428 61.111 0.00 0.00 42.62 5.28
1063 1199 1.584308 GAAACGCTAGCGCTAACAGAG 59.416 52.381 35.63 13.04 44.19 3.35
1064 1200 1.625616 GAAACGCTAGCGCTAACAGA 58.374 50.000 35.63 0.00 44.19 3.41
1065 1201 0.645868 GGAAACGCTAGCGCTAACAG 59.354 55.000 35.63 14.29 44.19 3.16
1066 1202 0.245539 AGGAAACGCTAGCGCTAACA 59.754 50.000 35.63 0.00 44.19 2.41
1067 1203 0.645868 CAGGAAACGCTAGCGCTAAC 59.354 55.000 35.63 23.00 44.19 2.34
1068 1204 1.082117 GCAGGAAACGCTAGCGCTAA 61.082 55.000 35.63 2.45 44.19 3.09
1069 1205 1.518572 GCAGGAAACGCTAGCGCTA 60.519 57.895 35.63 17.75 44.19 4.26
1070 1206 2.815647 GCAGGAAACGCTAGCGCT 60.816 61.111 35.63 23.01 44.19 5.92
1071 1207 2.815647 AGCAGGAAACGCTAGCGC 60.816 61.111 35.63 19.97 44.19 5.92
1072 1208 3.084579 CAGCAGGAAACGCTAGCG 58.915 61.111 34.27 34.27 46.03 4.26
1073 1209 1.577328 TTGCAGCAGGAAACGCTAGC 61.577 55.000 4.06 4.06 37.95 3.42
1074 1210 0.166814 GTTGCAGCAGGAAACGCTAG 59.833 55.000 0.00 0.00 37.95 3.42
1075 1211 0.533978 TGTTGCAGCAGGAAACGCTA 60.534 50.000 0.00 0.00 37.95 4.26
1076 1212 1.789078 CTGTTGCAGCAGGAAACGCT 61.789 55.000 21.75 0.00 40.04 5.07
1077 1213 1.370900 CTGTTGCAGCAGGAAACGC 60.371 57.895 21.75 0.00 33.11 4.84
1078 1214 0.040958 GTCTGTTGCAGCAGGAAACG 60.041 55.000 27.53 4.86 37.12 3.60
1079 1215 1.024271 TGTCTGTTGCAGCAGGAAAC 58.976 50.000 27.53 19.37 37.12 2.78
1080 1216 1.405105 GTTGTCTGTTGCAGCAGGAAA 59.595 47.619 27.53 19.30 37.12 3.13
1081 1217 1.024271 GTTGTCTGTTGCAGCAGGAA 58.976 50.000 27.53 18.29 37.12 3.36
1082 1218 1.159713 CGTTGTCTGTTGCAGCAGGA 61.160 55.000 27.53 13.77 37.12 3.86
1083 1219 1.280746 CGTTGTCTGTTGCAGCAGG 59.719 57.895 27.53 9.71 37.12 4.85
1084 1220 1.159713 TCCGTTGTCTGTTGCAGCAG 61.160 55.000 23.26 23.26 37.81 4.24
1085 1221 0.534877 ATCCGTTGTCTGTTGCAGCA 60.535 50.000 2.37 2.37 0.00 4.41
1086 1222 0.593128 AATCCGTTGTCTGTTGCAGC 59.407 50.000 0.00 0.00 0.00 5.25
1087 1223 1.664016 GCAATCCGTTGTCTGTTGCAG 60.664 52.381 3.76 0.00 43.33 4.41
1088 1224 0.310543 GCAATCCGTTGTCTGTTGCA 59.689 50.000 3.76 0.00 43.33 4.08
1089 1225 0.593128 AGCAATCCGTTGTCTGTTGC 59.407 50.000 0.00 0.00 43.97 4.17
1090 1226 1.069022 CCAGCAATCCGTTGTCTGTTG 60.069 52.381 0.00 0.00 37.57 3.33
1091 1227 1.238439 CCAGCAATCCGTTGTCTGTT 58.762 50.000 0.00 0.00 37.57 3.16
1092 1228 0.108585 ACCAGCAATCCGTTGTCTGT 59.891 50.000 0.00 0.00 37.57 3.41
1093 1229 1.197721 GAACCAGCAATCCGTTGTCTG 59.802 52.381 0.00 0.00 38.28 3.51
1094 1230 1.523758 GAACCAGCAATCCGTTGTCT 58.476 50.000 0.00 0.00 37.65 3.41
1095 1231 0.165944 CGAACCAGCAATCCGTTGTC 59.834 55.000 0.00 0.00 37.65 3.18
1096 1232 0.534203 ACGAACCAGCAATCCGTTGT 60.534 50.000 0.00 0.00 37.65 3.32
1097 1233 0.591170 AACGAACCAGCAATCCGTTG 59.409 50.000 0.00 0.00 41.15 4.10
1098 1234 0.872388 GAACGAACCAGCAATCCGTT 59.128 50.000 0.00 0.00 44.63 4.44
1099 1235 1.289109 CGAACGAACCAGCAATCCGT 61.289 55.000 0.00 0.00 34.74 4.69
1100 1236 1.289109 ACGAACGAACCAGCAATCCG 61.289 55.000 0.14 0.00 0.00 4.18
1101 1237 1.659098 CTACGAACGAACCAGCAATCC 59.341 52.381 0.14 0.00 0.00 3.01
1102 1238 1.060698 GCTACGAACGAACCAGCAATC 59.939 52.381 0.14 0.00 32.46 2.67
1604 1763 4.704833 GCCCGCCACTTGAGCAGA 62.705 66.667 0.00 0.00 0.00 4.26
1829 2045 2.029918 CGTCGGATGCTCCTTGATGATA 60.030 50.000 1.51 0.00 33.30 2.15
2003 2222 3.541713 GGCAGCTCGAGGTAGGGG 61.542 72.222 18.15 6.05 0.00 4.79
2129 2348 4.690719 AACGGCCCATCGAACGCA 62.691 61.111 0.00 0.00 0.00 5.24
2215 2434 2.092158 TCCATCCACAAACACCTCAACA 60.092 45.455 0.00 0.00 0.00 3.33
2245 2469 3.418995 ACTCATGAGAAGCACTGCAAAT 58.581 40.909 29.27 0.00 0.00 2.32
2266 2490 4.402829 TGCCCAAGCAGAAAACAGTTATA 58.597 39.130 0.00 0.00 46.52 0.98
2283 2507 1.702182 TCAGAAACTGCATTTGCCCA 58.298 45.000 0.00 0.00 41.18 5.36
2322 2546 3.194861 TGTCAACTAATATCGCACCAGC 58.805 45.455 0.00 0.00 37.42 4.85
2326 2550 7.863375 AGATAAGACTGTCAACTAATATCGCAC 59.137 37.037 10.88 0.00 0.00 5.34
2334 2558 6.150641 ACGCTACAGATAAGACTGTCAACTAA 59.849 38.462 10.88 0.00 46.36 2.24
2355 2625 0.823356 ACAGATTGCACCCAAACGCT 60.823 50.000 0.00 0.00 34.05 5.07
2461 2738 8.188531 CGTTCTTATATTTCTAAACGTTCCCA 57.811 34.615 0.00 0.00 35.89 4.37
2481 2758 9.790389 CTGATACTTAAGTGATCTAAACGTTCT 57.210 33.333 18.56 0.00 0.00 3.01
2482 2759 9.784680 TCTGATACTTAAGTGATCTAAACGTTC 57.215 33.333 18.56 0.00 0.00 3.95
2552 2829 5.375773 ACGGAGGGAGTAGTATTTACTCTC 58.624 45.833 12.52 9.54 43.55 3.20
2553 2830 5.375773 GACGGAGGGAGTAGTATTTACTCT 58.624 45.833 12.52 0.00 42.54 3.24
2554 2831 4.518590 GGACGGAGGGAGTAGTATTTACTC 59.481 50.000 5.91 5.91 42.28 2.59
2555 2832 4.468713 GGACGGAGGGAGTAGTATTTACT 58.531 47.826 0.00 0.00 40.24 2.24
2556 2833 3.571828 GGGACGGAGGGAGTAGTATTTAC 59.428 52.174 0.00 0.00 0.00 2.01
2557 2834 3.205056 TGGGACGGAGGGAGTAGTATTTA 59.795 47.826 0.00 0.00 0.00 1.40
2558 2835 2.023695 TGGGACGGAGGGAGTAGTATTT 60.024 50.000 0.00 0.00 0.00 1.40
2559 2836 1.572415 TGGGACGGAGGGAGTAGTATT 59.428 52.381 0.00 0.00 0.00 1.89
2560 2837 1.229131 TGGGACGGAGGGAGTAGTAT 58.771 55.000 0.00 0.00 0.00 2.12
2561 2838 1.229131 ATGGGACGGAGGGAGTAGTA 58.771 55.000 0.00 0.00 0.00 1.82
2562 2839 1.229131 TATGGGACGGAGGGAGTAGT 58.771 55.000 0.00 0.00 0.00 2.73
2563 2840 2.376695 TTATGGGACGGAGGGAGTAG 57.623 55.000 0.00 0.00 0.00 2.57
2564 2841 2.090943 ACATTATGGGACGGAGGGAGTA 60.091 50.000 0.00 0.00 0.00 2.59
2565 2842 1.344087 ACATTATGGGACGGAGGGAGT 60.344 52.381 0.00 0.00 0.00 3.85
2566 2843 1.424638 ACATTATGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
2567 2844 1.488812 CAACATTATGGGACGGAGGGA 59.511 52.381 0.00 0.00 0.00 4.20
2568 2845 1.476833 CCAACATTATGGGACGGAGGG 60.477 57.143 0.00 0.00 36.79 4.30
2569 2846 1.488812 TCCAACATTATGGGACGGAGG 59.511 52.381 0.00 0.00 41.05 4.30
2570 2847 2.561569 GTCCAACATTATGGGACGGAG 58.438 52.381 5.19 0.00 41.43 4.63
2571 2848 2.702592 GTCCAACATTATGGGACGGA 57.297 50.000 5.19 0.00 41.43 4.69
2574 2851 4.776795 AAAACGTCCAACATTATGGGAC 57.223 40.909 9.61 9.61 46.01 4.46
2611 2888 4.692155 CGTCCCATAAGGTAGAACGTTTTT 59.308 41.667 0.46 0.00 36.75 1.94
2612 2889 4.248058 CGTCCCATAAGGTAGAACGTTTT 58.752 43.478 0.46 0.00 36.75 2.43
2613 2890 3.368739 CCGTCCCATAAGGTAGAACGTTT 60.369 47.826 0.46 0.00 36.75 3.60
2614 2891 2.167075 CCGTCCCATAAGGTAGAACGTT 59.833 50.000 0.00 0.00 36.75 3.99
2615 2892 1.753073 CCGTCCCATAAGGTAGAACGT 59.247 52.381 0.00 0.00 36.75 3.99
2616 2893 2.026641 TCCGTCCCATAAGGTAGAACG 58.973 52.381 0.00 0.00 36.75 3.95
2617 2894 2.364647 CCTCCGTCCCATAAGGTAGAAC 59.635 54.545 0.00 0.00 36.75 3.01
2618 2895 2.674420 CCTCCGTCCCATAAGGTAGAA 58.326 52.381 0.00 0.00 36.75 2.10
2619 2896 1.133262 CCCTCCGTCCCATAAGGTAGA 60.133 57.143 0.00 0.00 36.75 2.59
2620 2897 1.133262 TCCCTCCGTCCCATAAGGTAG 60.133 57.143 0.00 0.00 36.75 3.18
2621 2898 0.935942 TCCCTCCGTCCCATAAGGTA 59.064 55.000 0.00 0.00 36.75 3.08
2622 2899 0.398664 CTCCCTCCGTCCCATAAGGT 60.399 60.000 0.00 0.00 36.75 3.50
2623 2900 0.398664 ACTCCCTCCGTCCCATAAGG 60.399 60.000 0.00 0.00 0.00 2.69
2624 2901 2.364647 GTTACTCCCTCCGTCCCATAAG 59.635 54.545 0.00 0.00 0.00 1.73
2625 2902 2.023695 AGTTACTCCCTCCGTCCCATAA 60.024 50.000 0.00 0.00 0.00 1.90
2626 2903 1.572415 AGTTACTCCCTCCGTCCCATA 59.428 52.381 0.00 0.00 0.00 2.74
2627 2904 0.338814 AGTTACTCCCTCCGTCCCAT 59.661 55.000 0.00 0.00 0.00 4.00
2628 2905 1.002069 TAGTTACTCCCTCCGTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
2629 2906 1.064091 ACTAGTTACTCCCTCCGTCCC 60.064 57.143 0.00 0.00 0.00 4.46
2630 2907 2.433662 ACTAGTTACTCCCTCCGTCC 57.566 55.000 0.00 0.00 0.00 4.79
2631 2908 4.574421 GTCTTACTAGTTACTCCCTCCGTC 59.426 50.000 0.00 0.00 0.00 4.79
2632 2909 4.018960 TGTCTTACTAGTTACTCCCTCCGT 60.019 45.833 0.00 0.00 0.00 4.69
2633 2910 4.521146 TGTCTTACTAGTTACTCCCTCCG 58.479 47.826 0.00 0.00 0.00 4.63
2634 2911 8.709272 AATATGTCTTACTAGTTACTCCCTCC 57.291 38.462 0.00 0.00 0.00 4.30
2650 2927 7.992754 AGCTTGTCTCTTCAAAATATGTCTT 57.007 32.000 0.00 0.00 0.00 3.01
2670 2947 4.780021 TGACCTGATTTCTTCCTAGAGCTT 59.220 41.667 0.00 0.00 0.00 3.74
2691 2968 7.352079 TGCATATTCAGTCTGAATCTACTGA 57.648 36.000 27.51 12.53 43.03 3.41
2694 2971 8.494347 GTCAATGCATATTCAGTCTGAATCTAC 58.506 37.037 27.51 18.59 43.03 2.59
2702 2979 3.801698 AGCGTCAATGCATATTCAGTCT 58.198 40.909 0.00 0.00 37.31 3.24
2708 2985 3.983988 CGTAGAGAGCGTCAATGCATATT 59.016 43.478 0.00 0.00 37.31 1.28
2710 2987 2.287608 CCGTAGAGAGCGTCAATGCATA 60.288 50.000 0.00 0.00 37.31 3.14
2751 3028 8.352942 GCTGCAGTATAAAAGCTACCATAAAAT 58.647 33.333 16.64 0.00 32.82 1.82
2752 3029 7.556275 AGCTGCAGTATAAAAGCTACCATAAAA 59.444 33.333 16.64 0.00 44.00 1.52
2753 3030 7.054124 AGCTGCAGTATAAAAGCTACCATAAA 58.946 34.615 16.64 0.00 44.00 1.40
2754 3031 6.591935 AGCTGCAGTATAAAAGCTACCATAA 58.408 36.000 16.64 0.00 44.00 1.90
2755 3032 6.174720 AGCTGCAGTATAAAAGCTACCATA 57.825 37.500 16.64 0.00 44.00 2.74
2756 3033 5.041191 AGCTGCAGTATAAAAGCTACCAT 57.959 39.130 16.64 0.00 44.00 3.55
2757 3034 4.487714 AGCTGCAGTATAAAAGCTACCA 57.512 40.909 16.64 0.00 44.00 3.25
2762 3039 5.278022 GGGTCAATAGCTGCAGTATAAAAGC 60.278 44.000 16.64 7.18 35.86 3.51
2763 3040 5.239525 GGGGTCAATAGCTGCAGTATAAAAG 59.760 44.000 16.64 0.12 0.00 2.27
2764 3041 5.130350 GGGGTCAATAGCTGCAGTATAAAA 58.870 41.667 16.64 0.00 0.00 1.52
2765 3042 4.445735 GGGGGTCAATAGCTGCAGTATAAA 60.446 45.833 16.64 0.00 0.00 1.40
2766 3043 3.072476 GGGGGTCAATAGCTGCAGTATAA 59.928 47.826 16.64 0.00 0.00 0.98
2767 3044 2.637872 GGGGGTCAATAGCTGCAGTATA 59.362 50.000 16.64 9.36 0.00 1.47
2768 3045 1.421646 GGGGGTCAATAGCTGCAGTAT 59.578 52.381 16.64 9.08 0.00 2.12
2769 3046 0.837272 GGGGGTCAATAGCTGCAGTA 59.163 55.000 16.64 7.02 0.00 2.74
2770 3047 1.207488 TGGGGGTCAATAGCTGCAGT 61.207 55.000 16.64 4.79 0.00 4.40
2771 3048 0.034186 TTGGGGGTCAATAGCTGCAG 60.034 55.000 10.11 10.11 0.00 4.41
2772 3049 0.034186 CTTGGGGGTCAATAGCTGCA 60.034 55.000 1.02 0.00 34.45 4.41
2773 3050 0.034089 ACTTGGGGGTCAATAGCTGC 60.034 55.000 0.00 0.00 34.45 5.25
2774 3051 1.408822 GGACTTGGGGGTCAATAGCTG 60.409 57.143 0.00 0.00 37.91 4.24
2822 3100 9.908152 GCTTTTATGTCCTATTGTTTGTTACTT 57.092 29.630 0.00 0.00 0.00 2.24
2827 3105 7.759489 TCAGCTTTTATGTCCTATTGTTTGT 57.241 32.000 0.00 0.00 0.00 2.83
2832 3110 8.514594 TGACTTTTCAGCTTTTATGTCCTATTG 58.485 33.333 0.00 0.00 0.00 1.90
2834 3112 8.814038 ATGACTTTTCAGCTTTTATGTCCTAT 57.186 30.769 0.00 0.00 34.35 2.57
2905 3183 4.217550 AGACATTGTGGTTTCCGTTAATGG 59.782 41.667 7.46 7.46 30.52 3.16
2948 3226 4.629634 TCATGCATCGTCGTTTATGTTTCT 59.370 37.500 0.00 0.00 0.00 2.52
2960 3248 2.141517 CCCTCTTGATCATGCATCGTC 58.858 52.381 0.00 0.00 33.61 4.20
2961 3249 1.764723 TCCCTCTTGATCATGCATCGT 59.235 47.619 0.00 0.00 33.61 3.73
2962 3250 2.414806 CTCCCTCTTGATCATGCATCG 58.585 52.381 0.00 0.00 33.61 3.84
2963 3251 2.152830 GCTCCCTCTTGATCATGCATC 58.847 52.381 0.00 0.00 0.00 3.91
2964 3252 1.493446 TGCTCCCTCTTGATCATGCAT 59.507 47.619 0.00 0.00 0.00 3.96
2965 3253 0.913924 TGCTCCCTCTTGATCATGCA 59.086 50.000 0.00 0.00 0.00 3.96
2966 3254 1.140452 TCTGCTCCCTCTTGATCATGC 59.860 52.381 0.00 0.00 0.00 4.06
2967 3255 3.555527 TTCTGCTCCCTCTTGATCATG 57.444 47.619 0.00 0.00 0.00 3.07
2968 3256 3.181442 CCATTCTGCTCCCTCTTGATCAT 60.181 47.826 0.00 0.00 0.00 2.45
2969 3257 2.172082 CCATTCTGCTCCCTCTTGATCA 59.828 50.000 0.00 0.00 0.00 2.92
3064 3353 5.071788 AGGATGATGGCTTCGGAGTTTATTA 59.928 40.000 0.00 0.00 0.00 0.98
3066 3355 3.392616 AGGATGATGGCTTCGGAGTTTAT 59.607 43.478 0.00 0.00 0.00 1.40
3068 3357 1.561542 AGGATGATGGCTTCGGAGTTT 59.438 47.619 0.00 0.00 0.00 2.66
3069 3358 1.134280 CAGGATGATGGCTTCGGAGTT 60.134 52.381 0.00 0.00 39.69 3.01
3070 3359 0.467384 CAGGATGATGGCTTCGGAGT 59.533 55.000 0.00 0.00 39.69 3.85
3071 3360 0.250209 CCAGGATGATGGCTTCGGAG 60.250 60.000 0.00 0.00 39.69 4.63
3072 3361 1.699054 CCCAGGATGATGGCTTCGGA 61.699 60.000 0.00 0.00 39.69 4.55
3073 3362 1.228063 CCCAGGATGATGGCTTCGG 60.228 63.158 0.00 0.00 39.69 4.30
3074 3363 1.228063 CCCCAGGATGATGGCTTCG 60.228 63.158 0.00 0.00 39.69 3.79
3075 3364 1.152368 CCCCCAGGATGATGGCTTC 59.848 63.158 0.00 0.00 39.69 3.86
3076 3365 3.078843 GCCCCCAGGATGATGGCTT 62.079 63.158 0.00 0.00 45.37 4.35
3079 3368 1.061905 TGTAGCCCCCAGGATGATGG 61.062 60.000 0.00 0.00 39.69 3.51
3080 3369 0.846015 TTGTAGCCCCCAGGATGATG 59.154 55.000 0.00 0.00 39.69 3.07
3082 3371 0.623723 GTTTGTAGCCCCCAGGATGA 59.376 55.000 0.00 0.00 39.69 2.92
3083 3372 0.395724 GGTTTGTAGCCCCCAGGATG 60.396 60.000 0.00 0.00 30.98 3.51
3086 3375 1.000896 CTGGTTTGTAGCCCCCAGG 60.001 63.158 0.00 0.00 40.65 4.45
3087 3376 1.000896 CCTGGTTTGTAGCCCCCAG 60.001 63.158 0.00 0.00 43.34 4.45
3088 3377 1.776710 ACCTGGTTTGTAGCCCCCA 60.777 57.895 0.00 0.00 0.00 4.96
3089 3378 1.001269 GACCTGGTTTGTAGCCCCC 60.001 63.158 0.00 0.00 0.00 5.40
3090 3379 0.035343 GAGACCTGGTTTGTAGCCCC 60.035 60.000 0.00 0.00 0.00 5.80
3091 3380 0.035343 GGAGACCTGGTTTGTAGCCC 60.035 60.000 0.00 0.00 0.00 5.19
3093 3382 1.339151 CCTGGAGACCTGGTTTGTAGC 60.339 57.143 0.00 0.00 37.76 3.58
3094 3383 2.257207 TCCTGGAGACCTGGTTTGTAG 58.743 52.381 0.00 0.00 42.31 2.74
3096 3385 1.518367 TTCCTGGAGACCTGGTTTGT 58.482 50.000 0.00 0.00 42.31 2.83
3097 3386 2.656947 TTTCCTGGAGACCTGGTTTG 57.343 50.000 0.00 0.00 42.31 2.93
3098 3387 3.160679 CATTTCCTGGAGACCTGGTTT 57.839 47.619 0.00 0.00 42.31 3.27
3099 3388 2.887151 CATTTCCTGGAGACCTGGTT 57.113 50.000 0.00 0.00 42.31 3.67
3110 3399 7.248437 GGTTTCTTTCGTATTACCATTTCCTG 58.752 38.462 0.00 0.00 0.00 3.86
3111 3400 6.093082 CGGTTTCTTTCGTATTACCATTTCCT 59.907 38.462 0.00 0.00 0.00 3.36
3112 3401 6.092533 TCGGTTTCTTTCGTATTACCATTTCC 59.907 38.462 0.00 0.00 0.00 3.13
3113 3402 7.064060 TCGGTTTCTTTCGTATTACCATTTC 57.936 36.000 0.00 0.00 0.00 2.17
3114 3403 7.619964 ATCGGTTTCTTTCGTATTACCATTT 57.380 32.000 0.00 0.00 0.00 2.32
3115 3404 8.606602 GTTATCGGTTTCTTTCGTATTACCATT 58.393 33.333 0.00 0.00 0.00 3.16
3116 3405 7.225341 GGTTATCGGTTTCTTTCGTATTACCAT 59.775 37.037 0.00 0.00 0.00 3.55
3117 3406 6.534793 GGTTATCGGTTTCTTTCGTATTACCA 59.465 38.462 0.00 0.00 0.00 3.25
3118 3407 6.758416 AGGTTATCGGTTTCTTTCGTATTACC 59.242 38.462 0.00 0.00 0.00 2.85
3119 3408 7.615790 CAGGTTATCGGTTTCTTTCGTATTAC 58.384 38.462 0.00 0.00 0.00 1.89
3120 3409 6.256321 GCAGGTTATCGGTTTCTTTCGTATTA 59.744 38.462 0.00 0.00 0.00 0.98
3121 3410 5.064325 GCAGGTTATCGGTTTCTTTCGTATT 59.936 40.000 0.00 0.00 0.00 1.89
3122 3411 4.569564 GCAGGTTATCGGTTTCTTTCGTAT 59.430 41.667 0.00 0.00 0.00 3.06
3123 3412 3.928375 GCAGGTTATCGGTTTCTTTCGTA 59.072 43.478 0.00 0.00 0.00 3.43
3124 3413 2.740447 GCAGGTTATCGGTTTCTTTCGT 59.260 45.455 0.00 0.00 0.00 3.85
3125 3414 2.739913 TGCAGGTTATCGGTTTCTTTCG 59.260 45.455 0.00 0.00 0.00 3.46
3126 3415 4.759516 TTGCAGGTTATCGGTTTCTTTC 57.240 40.909 0.00 0.00 0.00 2.62
3127 3416 5.523438 TTTTGCAGGTTATCGGTTTCTTT 57.477 34.783 0.00 0.00 0.00 2.52
3128 3417 4.558697 GCTTTTGCAGGTTATCGGTTTCTT 60.559 41.667 0.00 0.00 46.58 2.52
3129 3418 3.057526 GCTTTTGCAGGTTATCGGTTTCT 60.058 43.478 0.00 0.00 46.58 2.52
3130 3419 3.242518 GCTTTTGCAGGTTATCGGTTTC 58.757 45.455 0.00 0.00 46.58 2.78
3131 3420 3.297830 GCTTTTGCAGGTTATCGGTTT 57.702 42.857 0.00 0.00 46.58 3.27
3145 3434 5.106317 TGGCTTCGGAGTTTATTAGCTTTTG 60.106 40.000 0.00 0.00 0.00 2.44
3146 3435 5.007682 TGGCTTCGGAGTTTATTAGCTTTT 58.992 37.500 0.00 0.00 0.00 2.27
3147 3436 4.585879 TGGCTTCGGAGTTTATTAGCTTT 58.414 39.130 0.00 0.00 0.00 3.51
3148 3437 4.216411 TGGCTTCGGAGTTTATTAGCTT 57.784 40.909 0.00 0.00 0.00 3.74
3149 3438 3.906720 TGGCTTCGGAGTTTATTAGCT 57.093 42.857 0.00 0.00 0.00 3.32
3150 3439 4.127171 TGATGGCTTCGGAGTTTATTAGC 58.873 43.478 0.00 0.00 0.00 3.09
3151 3440 5.409826 GGATGATGGCTTCGGAGTTTATTAG 59.590 44.000 0.00 0.00 0.00 1.73
3180 3469 0.035343 GGAGACCTGGTTTGTAGCCC 60.035 60.000 0.00 0.00 0.00 5.19
3182 3471 1.339151 CCTGGAGACCTGGTTTGTAGC 60.339 57.143 0.00 0.00 37.76 3.58
3222 3511 7.880160 TGATGTATGGTTAGAATTTCCCTTG 57.120 36.000 0.00 0.00 0.00 3.61
3252 3541 7.109501 TGCTATCCTGCTTTAAAACTGTGATA 58.890 34.615 0.00 0.00 0.00 2.15
3253 3542 5.945784 TGCTATCCTGCTTTAAAACTGTGAT 59.054 36.000 0.00 0.00 0.00 3.06
3263 3552 6.830324 AGATGTTCATTTGCTATCCTGCTTTA 59.170 34.615 0.00 0.00 0.00 1.85
3338 3627 0.994247 ACCAACAGGATCATGGCTGA 59.006 50.000 12.66 0.00 37.77 4.26
3347 3636 2.695585 GAGGATAGGGACCAACAGGAT 58.304 52.381 0.00 0.00 0.00 3.24
3405 3694 3.256383 GTGGGGCGTAAAAATGGTTAAGT 59.744 43.478 0.00 0.00 0.00 2.24
3408 3697 3.157750 AGTGGGGCGTAAAAATGGTTA 57.842 42.857 0.00 0.00 0.00 2.85
3459 3748 6.591062 GGCTTCATGATTGAAATACTTTGCAA 59.409 34.615 0.00 0.00 41.22 4.08
3466 3755 8.882415 ATCAAATGGCTTCATGATTGAAATAC 57.118 30.769 10.35 0.00 41.22 1.89
3471 3760 8.240267 TGATTATCAAATGGCTTCATGATTGA 57.760 30.769 9.06 9.06 34.24 2.57
3506 3795 0.464036 GGTGACCGATCCATGTGCTA 59.536 55.000 0.00 0.00 0.00 3.49
3513 3802 1.348064 ACAAGAAGGTGACCGATCCA 58.652 50.000 6.81 0.00 0.00 3.41
3633 3953 9.817809 TGTTCTTTCAGTCTAACATGATATACC 57.182 33.333 0.00 0.00 0.00 2.73
3649 3969 8.272545 TGGAATATCATGAAGTGTTCTTTCAG 57.727 34.615 0.00 0.00 33.64 3.02
3655 3975 6.855836 TGCTTTGGAATATCATGAAGTGTTC 58.144 36.000 0.00 0.00 0.00 3.18
3667 3987 7.839907 TCTGTTGCTAAATTGCTTTGGAATAT 58.160 30.769 0.00 0.00 0.00 1.28
3689 4009 1.144969 TTTACTCTTGCGGCGTTCTG 58.855 50.000 9.37 0.00 0.00 3.02
3695 4015 7.421530 TCTATAAATCATTTACTCTTGCGGC 57.578 36.000 0.00 0.00 0.00 6.53
3706 4026 9.593565 GGGAAGGAAGGAATCTATAAATCATTT 57.406 33.333 0.00 0.00 0.00 2.32
3723 4043 6.796785 AAATGTTCATATTGGGGAAGGAAG 57.203 37.500 0.00 0.00 0.00 3.46
3732 4052 9.630098 GCTGGTGATAATAAATGTTCATATTGG 57.370 33.333 0.00 0.00 0.00 3.16
3739 4059 5.221244 GGGTGGCTGGTGATAATAAATGTTC 60.221 44.000 0.00 0.00 0.00 3.18
3740 4060 4.649218 GGGTGGCTGGTGATAATAAATGTT 59.351 41.667 0.00 0.00 0.00 2.71
3741 4061 4.079212 AGGGTGGCTGGTGATAATAAATGT 60.079 41.667 0.00 0.00 0.00 2.71
3795 4116 4.517285 TCTGGCTGGTGCTTAGAAAATAG 58.483 43.478 0.00 0.00 39.59 1.73
3802 4123 3.812053 GTGATTATCTGGCTGGTGCTTAG 59.188 47.826 0.00 0.00 39.59 2.18
3816 4137 6.827727 TGCCCCTAGAGTTAAAGTGATTATC 58.172 40.000 0.00 0.00 0.00 1.75
3821 4142 4.362677 AGATGCCCCTAGAGTTAAAGTGA 58.637 43.478 0.00 0.00 0.00 3.41
3838 4159 6.319141 ACTTCTTGTGGAAAGTTAAGATGC 57.681 37.500 0.00 0.00 33.07 3.91
3875 4196 3.359033 CTCTTGGCTGAAAATGGGATCA 58.641 45.455 0.00 0.00 0.00 2.92
3961 4284 8.504005 GTTTGTGCTGTAGTAGTTTTGACATAT 58.496 33.333 0.00 0.00 0.00 1.78
3977 4300 8.515414 GGAAGATATTAAAGAAGTTTGTGCTGT 58.485 33.333 0.00 0.00 0.00 4.40
3978 4301 7.970614 GGGAAGATATTAAAGAAGTTTGTGCTG 59.029 37.037 0.00 0.00 0.00 4.41
3999 4322 4.944317 GGGATTCTTTAGAGTTGTGGGAAG 59.056 45.833 0.00 0.00 0.00 3.46
4000 4323 4.263771 GGGGATTCTTTAGAGTTGTGGGAA 60.264 45.833 0.00 0.00 0.00 3.97
4005 4328 6.636454 TGTATGGGGATTCTTTAGAGTTGT 57.364 37.500 0.00 0.00 0.00 3.32
4015 4338 3.151542 AGGACCTTGTATGGGGATTCT 57.848 47.619 0.00 0.00 0.00 2.40
4022 4345 6.038271 GTGCAGTTTATAAGGACCTTGTATGG 59.962 42.308 17.47 5.85 0.00 2.74
4045 4368 2.715046 TGCAAAGAGCCTTATCAGGTG 58.285 47.619 0.00 0.00 43.18 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.