Multiple sequence alignment - TraesCS3D01G329600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G329600 chr3D 100.000 5383 0 0 1 5383 442390372 442395754 0.000000e+00 9941.0
1 TraesCS3D01G329600 chr3D 97.917 48 0 1 1136 1182 108210786 108210739 1.240000e-11 82.4
2 TraesCS3D01G329600 chr3D 94.737 38 2 0 5241 5278 116163327 116163364 5.820000e-05 60.2
3 TraesCS3D01G329600 chr3D 100.000 29 0 0 5248 5276 609020492 609020464 3.000000e-03 54.7
4 TraesCS3D01G329600 chr3D 100.000 29 0 0 5248 5276 609021729 609021701 3.000000e-03 54.7
5 TraesCS3D01G329600 chr3A 94.456 3445 121 29 1653 5088 583697625 583701008 0.000000e+00 5240.0
6 TraesCS3D01G329600 chr3A 90.851 776 45 12 372 1123 583696414 583697187 0.000000e+00 1016.0
7 TraesCS3D01G329600 chr3A 93.946 446 21 5 1177 1620 583697183 583697624 0.000000e+00 669.0
8 TraesCS3D01G329600 chr3A 85.788 387 42 9 4713 5088 571844522 571844138 1.090000e-106 398.0
9 TraesCS3D01G329600 chr3A 90.777 206 9 3 181 377 583696122 583696326 3.200000e-67 267.0
10 TraesCS3D01G329600 chr3A 83.041 171 20 5 5079 5240 583702345 583702515 4.340000e-31 147.0
11 TraesCS3D01G329600 chr3A 95.238 42 2 0 5237 5278 686539331 686539372 3.480000e-07 67.6
12 TraesCS3D01G329600 chr3B 92.136 2060 121 21 2435 4462 580031423 580033473 0.000000e+00 2868.0
13 TraesCS3D01G329600 chr3B 94.064 1196 56 5 1180 2373 580030234 580031416 0.000000e+00 1801.0
14 TraesCS3D01G329600 chr3B 89.231 1170 70 19 2 1124 580029076 580030236 0.000000e+00 1411.0
15 TraesCS3D01G329600 chr7B 91.313 2003 126 20 2435 4414 32022414 32020437 0.000000e+00 2691.0
16 TraesCS3D01G329600 chr7B 94.215 1210 56 5 1180 2385 32023613 32022414 0.000000e+00 1834.0
17 TraesCS3D01G329600 chr7B 94.667 975 43 4 1180 2150 32025051 32026020 0.000000e+00 1504.0
18 TraesCS3D01G329600 chr7B 90.014 691 42 7 455 1124 32024295 32023611 0.000000e+00 869.0
19 TraesCS3D01G329600 chr7B 83.992 481 30 17 2 447 32024906 32024438 8.340000e-113 418.0
20 TraesCS3D01G329600 chr7B 92.661 109 7 1 4462 4569 32020355 32020247 7.220000e-34 156.0
21 TraesCS3D01G329600 chr7B 92.941 85 6 0 1040 1124 32024969 32025053 2.040000e-24 124.0
22 TraesCS3D01G329600 chr2A 91.163 2003 128 22 2435 4414 337721109 337723085 0.000000e+00 2673.0
23 TraesCS3D01G329600 chr2A 91.163 2003 128 21 2435 4414 337860914 337862890 0.000000e+00 2673.0
24 TraesCS3D01G329600 chr2A 94.298 1210 54 6 1180 2385 337859716 337860914 0.000000e+00 1838.0
25 TraesCS3D01G329600 chr2A 92.975 1210 58 7 1180 2385 337719923 337721109 0.000000e+00 1738.0
26 TraesCS3D01G329600 chr2A 94.694 980 41 4 1180 2153 337855749 337854775 0.000000e+00 1511.0
27 TraesCS3D01G329600 chr2A 94.388 980 44 4 1180 2153 337715969 337714995 0.000000e+00 1495.0
28 TraesCS3D01G329600 chr2A 91.535 697 32 5 449 1124 337859028 337859718 0.000000e+00 935.0
29 TraesCS3D01G329600 chr2A 91.499 694 32 5 452 1124 337716654 337715967 0.000000e+00 929.0
30 TraesCS3D01G329600 chr2A 91.248 697 34 5 449 1124 337719235 337719925 0.000000e+00 924.0
31 TraesCS3D01G329600 chr2A 91.342 693 34 11 452 1124 337856433 337855747 0.000000e+00 924.0
32 TraesCS3D01G329600 chr2A 84.823 481 26 18 2 447 337718630 337719098 1.780000e-119 440.0
33 TraesCS3D01G329600 chr2A 84.823 481 26 17 2 447 337858423 337858891 1.780000e-119 440.0
34 TraesCS3D01G329600 chr2A 84.632 475 32 17 2 447 337717256 337716794 8.280000e-118 435.0
35 TraesCS3D01G329600 chr2A 83.992 481 30 17 2 447 337857041 337856573 8.340000e-113 418.0
36 TraesCS3D01G329600 chr2A 95.495 111 3 2 5275 5383 768684129 768684239 5.540000e-40 176.0
37 TraesCS3D01G329600 chr2A 80.932 236 20 7 88 299 707004902 707004668 4.310000e-36 163.0
38 TraesCS3D01G329600 chr2A 92.661 109 7 1 4462 4569 337723167 337723275 7.220000e-34 156.0
39 TraesCS3D01G329600 chr2A 92.661 109 7 1 4462 4569 337862972 337863080 7.220000e-34 156.0
40 TraesCS3D01G329600 chr5A 87.234 376 38 8 4714 5080 43263757 43264131 2.320000e-113 420.0
41 TraesCS3D01G329600 chr5A 97.917 48 0 1 1136 1182 362189693 362189740 1.240000e-11 82.4
42 TraesCS3D01G329600 chr5A 100.000 31 0 0 5248 5278 331937597 331937627 2.090000e-04 58.4
43 TraesCS3D01G329600 chr6D 85.567 388 35 12 4714 5088 452138540 452138919 2.350000e-103 387.0
44 TraesCS3D01G329600 chr5D 85.411 377 39 12 4713 5080 126248292 126248661 1.420000e-100 377.0
45 TraesCS3D01G329600 chr5D 91.935 62 4 1 1121 1181 285024174 285024113 9.610000e-13 86.1
46 TraesCS3D01G329600 chr5D 100.000 32 0 0 5247 5278 25283229 25283198 5.820000e-05 60.2
47 TraesCS3D01G329600 chr5D 100.000 29 0 0 5248 5276 526419582 526419610 3.000000e-03 54.7
48 TraesCS3D01G329600 chr7A 87.462 327 35 3 4714 5034 520791981 520791655 6.580000e-99 372.0
49 TraesCS3D01G329600 chr6B 82.368 380 57 8 4713 5086 577191619 577191994 6.730000e-84 322.0
50 TraesCS3D01G329600 chr6B 92.857 56 3 1 1136 1190 144918786 144918841 4.470000e-11 80.5
51 TraesCS3D01G329600 chr6B 92.593 54 4 0 336 389 223620460 223620407 1.610000e-10 78.7
52 TraesCS3D01G329600 chr6B 83.824 68 11 0 5098 5165 51563803 51563736 1.250000e-06 65.8
53 TraesCS3D01G329600 chr7D 83.333 288 36 6 4808 5088 439381653 439381371 6.920000e-64 255.0
54 TraesCS3D01G329600 chr7D 95.495 111 3 2 5275 5383 388131080 388131190 5.540000e-40 176.0
55 TraesCS3D01G329600 chr7D 90.909 88 6 2 4706 4791 439383507 439383420 3.410000e-22 117.0
56 TraesCS3D01G329600 chr1B 80.838 334 43 16 4765 5089 649682257 649682578 5.390000e-60 243.0
57 TraesCS3D01G329600 chr2B 84.821 224 23 5 87 299 680205705 680205482 1.170000e-51 215.0
58 TraesCS3D01G329600 chr2B 82.400 250 39 4 785 1033 701751088 701750843 4.220000e-51 213.0
59 TraesCS3D01G329600 chr2B 89.855 69 6 1 5097 5165 787870014 787869947 2.670000e-13 87.9
60 TraesCS3D01G329600 chr2B 96.970 33 1 0 1235 1267 701748561 701748529 7.530000e-04 56.5
61 TraesCS3D01G329600 chr2D 81.928 249 42 2 785 1033 582694794 582694549 1.960000e-49 207.0
62 TraesCS3D01G329600 chr2D 82.533 229 23 5 88 299 567488966 567488738 9.210000e-43 185.0
63 TraesCS3D01G329600 chr2D 94.444 54 3 0 336 389 567488737 567488684 3.460000e-12 84.2
64 TraesCS3D01G329600 chr6A 95.495 111 3 1 5275 5383 577071259 577071149 5.540000e-40 176.0
65 TraesCS3D01G329600 chr6A 94.595 111 4 1 5275 5383 186524355 186524465 2.580000e-38 171.0
66 TraesCS3D01G329600 chrUn 94.595 111 4 1 5275 5383 45825239 45825349 2.580000e-38 171.0
67 TraesCS3D01G329600 chrUn 94.595 111 4 1 5275 5383 372828720 372828610 2.580000e-38 171.0
68 TraesCS3D01G329600 chrUn 94.595 111 4 1 5275 5383 372830598 372830488 2.580000e-38 171.0
69 TraesCS3D01G329600 chr1D 94.595 111 4 1 5275 5383 6667259 6667369 2.580000e-38 171.0
70 TraesCS3D01G329600 chr1D 94.595 111 4 1 5275 5383 425235400 425235290 2.580000e-38 171.0
71 TraesCS3D01G329600 chr5B 89.394 66 6 1 1121 1185 631031558 631031623 1.240000e-11 82.4
72 TraesCS3D01G329600 chr5B 88.406 69 3 3 1118 1182 308566475 308566542 1.610000e-10 78.7
73 TraesCS3D01G329600 chr5B 88.889 63 6 1 1121 1182 631025780 631025842 5.780000e-10 76.8
74 TraesCS3D01G329600 chr4A 97.917 48 0 1 1136 1182 590126598 590126551 1.240000e-11 82.4
75 TraesCS3D01G329600 chr4D 88.525 61 6 1 1136 1195 170210417 170210477 7.480000e-09 73.1
76 TraesCS3D01G329600 chr1A 94.737 38 2 0 5128 5165 56613891 56613928 5.820000e-05 60.2
77 TraesCS3D01G329600 chr1A 97.143 35 1 0 5244 5278 524275481 524275515 5.820000e-05 60.2
78 TraesCS3D01G329600 chr1A 96.875 32 1 0 5243 5274 405827629 405827598 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G329600 chr3D 442390372 442395754 5382 False 9941.000000 9941 100.000000 1 5383 1 chr3D.!!$F2 5382
1 TraesCS3D01G329600 chr3A 583696122 583702515 6393 False 1467.800000 5240 90.614200 181 5240 5 chr3A.!!$F2 5059
2 TraesCS3D01G329600 chr3B 580029076 580033473 4397 False 2026.666667 2868 91.810333 2 4462 3 chr3B.!!$F1 4460
3 TraesCS3D01G329600 chr7B 32020247 32024906 4659 True 1193.600000 2691 90.439000 2 4569 5 chr7B.!!$R1 4567
4 TraesCS3D01G329600 chr7B 32024969 32026020 1051 False 814.000000 1504 93.804000 1040 2150 2 chr7B.!!$F1 1110
5 TraesCS3D01G329600 chr2A 337858423 337863080 4657 False 1208.400000 2673 90.896000 2 4569 5 chr2A.!!$F3 4567
6 TraesCS3D01G329600 chr2A 337718630 337723275 4645 False 1186.200000 2673 90.574000 2 4569 5 chr2A.!!$F2 4567
7 TraesCS3D01G329600 chr2A 337714995 337717256 2261 True 953.000000 1495 90.173000 2 2153 3 chr2A.!!$R2 2151
8 TraesCS3D01G329600 chr2A 337854775 337857041 2266 True 951.000000 1511 90.009333 2 2153 3 chr2A.!!$R3 2151

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
681 925 0.451792 GTCACCACGACGACGAGTAC 60.452 60.0 15.32 6.66 42.66 2.73 F
1140 1412 0.115745 TACTCCCTCCGTCCCAAAGT 59.884 55.0 0.00 0.00 0.00 2.66 F
1142 1414 0.321653 CTCCCTCCGTCCCAAAGTTG 60.322 60.0 0.00 0.00 0.00 3.16 F
1144 1416 0.688487 CCCTCCGTCCCAAAGTTGTA 59.312 55.0 0.00 0.00 0.00 2.41 F
2967 3260 0.729116 ACGATGCTGCAGTATTGTGC 59.271 50.0 30.16 12.81 44.27 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1547 1820 0.602638 TGGCTGACGCTTGTTAGGTG 60.603 55.000 0.0 0.0 36.09 4.00 R
2969 3262 1.200020 GCCACAGTAACCAAGATGCAC 59.800 52.381 0.0 0.0 0.00 4.57 R
2970 3263 1.202867 TGCCACAGTAACCAAGATGCA 60.203 47.619 0.0 0.0 0.00 3.96 R
2971 3264 1.470098 CTGCCACAGTAACCAAGATGC 59.530 52.381 0.0 0.0 0.00 3.91 R
4692 5072 0.102481 AGATATGACGCACGACACCC 59.898 55.000 0.0 0.0 0.00 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
110 122 3.083997 CCCTTCCCCGTCCTCCAG 61.084 72.222 0.00 0.00 0.00 3.86
124 136 4.729918 CCAGCTCAAGCCGCCCTT 62.730 66.667 0.00 0.00 43.38 3.95
131 143 4.729918 AAGCCGCCCTTCCTGCAG 62.730 66.667 6.78 6.78 0.00 4.41
370 408 2.838202 GGTAAGATTGAGGTGGACCAGA 59.162 50.000 0.00 0.00 38.89 3.86
394 447 4.842574 TGCTAATTGTTATCCAGAGCACA 58.157 39.130 0.00 0.00 33.03 4.57
509 734 9.281075 CACATGTACATAATTCTGTTGTCAATG 57.719 33.333 8.32 3.22 0.00 2.82
665 898 4.467084 GGGATGGGCGCTTCGTCA 62.467 66.667 19.40 7.74 30.88 4.35
681 925 0.451792 GTCACCACGACGACGAGTAC 60.452 60.000 15.32 6.66 42.66 2.73
700 944 2.915079 CCCACACCATATCCGCCA 59.085 61.111 0.00 0.00 0.00 5.69
848 1120 7.357951 TCAAACCAAACAATCAACTTTGAAC 57.642 32.000 0.00 0.00 41.13 3.18
910 1182 5.008217 TCAAAGATCCACCAACTTTGTTACG 59.992 40.000 15.16 0.00 45.72 3.18
939 1211 5.001232 TCAAATTCCTCCAACCTTACTTCG 58.999 41.667 0.00 0.00 0.00 3.79
956 1228 9.181805 CCTTACTTCGATTTCTTTTTCCTTTTC 57.818 33.333 0.00 0.00 0.00 2.29
978 1250 3.009473 CCTTTCAGTCAGATCTTTCCCCA 59.991 47.826 0.00 0.00 0.00 4.96
985 1257 1.550524 CAGATCTTTCCCCACGTCAGA 59.449 52.381 0.00 0.00 0.00 3.27
1059 1331 2.700773 GGCGCCAATGTCCAAGGAC 61.701 63.158 24.80 12.30 44.77 3.85
1126 1398 8.794335 AGTGACCTGAATCTTTTTAATACTCC 57.206 34.615 0.00 0.00 0.00 3.85
1127 1399 7.829706 AGTGACCTGAATCTTTTTAATACTCCC 59.170 37.037 0.00 0.00 0.00 4.30
1128 1400 7.829706 GTGACCTGAATCTTTTTAATACTCCCT 59.170 37.037 0.00 0.00 0.00 4.20
1129 1401 8.047310 TGACCTGAATCTTTTTAATACTCCCTC 58.953 37.037 0.00 0.00 0.00 4.30
1130 1402 7.347252 ACCTGAATCTTTTTAATACTCCCTCC 58.653 38.462 0.00 0.00 0.00 4.30
1131 1403 6.483640 CCTGAATCTTTTTAATACTCCCTCCG 59.516 42.308 0.00 0.00 0.00 4.63
1132 1404 6.954232 TGAATCTTTTTAATACTCCCTCCGT 58.046 36.000 0.00 0.00 0.00 4.69
1133 1405 7.046033 TGAATCTTTTTAATACTCCCTCCGTC 58.954 38.462 0.00 0.00 0.00 4.79
1134 1406 5.349061 TCTTTTTAATACTCCCTCCGTCC 57.651 43.478 0.00 0.00 0.00 4.79
1135 1407 4.162888 TCTTTTTAATACTCCCTCCGTCCC 59.837 45.833 0.00 0.00 0.00 4.46
1136 1408 2.852714 TTAATACTCCCTCCGTCCCA 57.147 50.000 0.00 0.00 0.00 4.37
1137 1409 2.852714 TAATACTCCCTCCGTCCCAA 57.147 50.000 0.00 0.00 0.00 4.12
1138 1410 1.961133 AATACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
1139 1411 1.497161 ATACTCCCTCCGTCCCAAAG 58.503 55.000 0.00 0.00 0.00 2.77
1140 1412 0.115745 TACTCCCTCCGTCCCAAAGT 59.884 55.000 0.00 0.00 0.00 2.66
1141 1413 0.767060 ACTCCCTCCGTCCCAAAGTT 60.767 55.000 0.00 0.00 0.00 2.66
1142 1414 0.321653 CTCCCTCCGTCCCAAAGTTG 60.322 60.000 0.00 0.00 0.00 3.16
1143 1415 1.057851 TCCCTCCGTCCCAAAGTTGT 61.058 55.000 0.00 0.00 0.00 3.32
1144 1416 0.688487 CCCTCCGTCCCAAAGTTGTA 59.312 55.000 0.00 0.00 0.00 2.41
1145 1417 1.609841 CCCTCCGTCCCAAAGTTGTAC 60.610 57.143 0.00 0.00 0.00 2.90
1146 1418 1.346722 CCTCCGTCCCAAAGTTGTACT 59.653 52.381 0.00 0.00 0.00 2.73
1147 1419 2.564062 CCTCCGTCCCAAAGTTGTACTA 59.436 50.000 0.00 0.00 0.00 1.82
1148 1420 3.007182 CCTCCGTCCCAAAGTTGTACTAA 59.993 47.826 0.00 0.00 0.00 2.24
1149 1421 4.503643 CCTCCGTCCCAAAGTTGTACTAAA 60.504 45.833 0.00 0.00 0.00 1.85
1150 1422 4.379652 TCCGTCCCAAAGTTGTACTAAAC 58.620 43.478 0.00 0.00 0.00 2.01
1151 1423 4.101430 TCCGTCCCAAAGTTGTACTAAACT 59.899 41.667 0.00 0.00 42.21 2.66
1169 1441 8.166422 ACTAAACTTGAGACACTTATTTTGGG 57.834 34.615 0.00 0.00 0.00 4.12
1170 1442 7.996644 ACTAAACTTGAGACACTTATTTTGGGA 59.003 33.333 0.00 0.00 0.00 4.37
1171 1443 6.635030 AACTTGAGACACTTATTTTGGGAC 57.365 37.500 0.00 0.00 0.00 4.46
1172 1444 4.755123 ACTTGAGACACTTATTTTGGGACG 59.245 41.667 0.00 0.00 0.00 4.79
1173 1445 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
1174 1446 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
1175 1447 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
1176 1448 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
1177 1449 2.640826 ACACTTATTTTGGGACGGAGGA 59.359 45.455 0.00 0.00 0.00 3.71
1178 1450 3.270877 CACTTATTTTGGGACGGAGGAG 58.729 50.000 0.00 0.00 0.00 3.69
1212 1484 5.471556 TGATTGATTCACCATTTGCAGTT 57.528 34.783 0.00 0.00 0.00 3.16
1218 1490 4.669206 TTCACCATTTGCAGTTGACATT 57.331 36.364 0.00 0.00 0.00 2.71
1301 1573 4.337145 ACACAGTTGGTAGGAGTAGAGAG 58.663 47.826 0.00 0.00 0.00 3.20
1398 1670 8.800370 TGTATATAGCTTTTCACCAAATGTCA 57.200 30.769 0.00 0.00 0.00 3.58
1535 1808 9.541143 GAAGAACAATCCACTTATTTTTGGAAA 57.459 29.630 0.00 0.00 45.14 3.13
1600 1873 5.805994 GTCGTGTCTAGTATTTCCCTTTGAG 59.194 44.000 0.00 0.00 0.00 3.02
1617 1890 3.936902 TGAGTTGTGCGTGAACTTTAC 57.063 42.857 0.00 0.00 33.71 2.01
1622 1895 5.803118 AGTTGTGCGTGAACTTTACTTTAC 58.197 37.500 0.00 0.00 28.94 2.01
1663 1936 5.545658 TCAGTTTGTCACTTGACTTGAAC 57.454 39.130 10.63 11.54 44.99 3.18
1692 1966 6.512342 AGGAACGATATATTACTCCCTTCG 57.488 41.667 0.00 0.00 0.00 3.79
1830 2105 7.479980 TCTACTTTTCTTGTGGTTGTGAATTG 58.520 34.615 0.00 0.00 0.00 2.32
1831 2106 5.418676 ACTTTTCTTGTGGTTGTGAATTGG 58.581 37.500 0.00 0.00 0.00 3.16
1988 2268 2.689983 CAGTGTTGGTTCCTTTGCTCTT 59.310 45.455 0.00 0.00 0.00 2.85
2182 2462 4.213482 CGCCAAACTGCTAAAGTAGAAACT 59.787 41.667 1.86 0.00 38.56 2.66
2203 2483 4.458295 ACTTTCATCATTTGCTCTCACAGG 59.542 41.667 0.00 0.00 0.00 4.00
2208 2488 1.462283 CATTTGCTCTCACAGGTGTCG 59.538 52.381 0.00 0.00 0.00 4.35
2438 2718 1.535028 TGCCAGTGAACAACTTATGCG 59.465 47.619 0.00 0.00 36.83 4.73
2535 2817 7.007725 GCACTTATGTTCAAATTTCATGACTCG 59.992 37.037 0.00 0.00 0.00 4.18
2694 2976 6.819649 TCCGGAATATTAACCAGTGTAAGTTG 59.180 38.462 0.00 0.00 0.00 3.16
2816 3106 5.099042 TCCTGGTGGTCTTTTTATCTAGC 57.901 43.478 0.00 0.00 34.23 3.42
2919 3212 1.225855 TTTTAGCGTGCTGGTGTGAG 58.774 50.000 4.25 0.00 0.00 3.51
2957 3250 3.364441 TGCAACCCACGATGCTGC 61.364 61.111 0.00 0.00 42.97 5.25
2967 3260 0.729116 ACGATGCTGCAGTATTGTGC 59.271 50.000 30.16 12.81 44.27 4.57
2968 3261 1.012086 CGATGCTGCAGTATTGTGCT 58.988 50.000 18.84 0.00 44.32 4.40
2969 3262 1.267882 CGATGCTGCAGTATTGTGCTG 60.268 52.381 18.84 1.91 44.32 4.41
2970 3263 1.741706 GATGCTGCAGTATTGTGCTGT 59.258 47.619 18.84 0.00 44.32 4.40
2971 3264 0.876399 TGCTGCAGTATTGTGCTGTG 59.124 50.000 16.64 0.00 44.32 3.66
3045 3338 9.965824 AGGTTTTGATCTGTTAGTTTAATTGTG 57.034 29.630 0.00 0.00 0.00 3.33
3067 3360 7.608153 TGTGAGGTTATCGATAAGAGTTTTGA 58.392 34.615 18.03 0.00 0.00 2.69
3446 3759 3.118811 AGGTAGCTTCATCTCTCTGTTGC 60.119 47.826 0.00 0.00 0.00 4.17
3448 3761 3.630892 AGCTTCATCTCTCTGTTGCAT 57.369 42.857 0.00 0.00 0.00 3.96
3452 3765 4.437121 GCTTCATCTCTCTGTTGCATTGTC 60.437 45.833 0.00 0.00 0.00 3.18
3561 3884 2.607892 GGCACGCACACTGGTCTTC 61.608 63.158 0.00 0.00 0.00 2.87
3562 3885 1.887242 GCACGCACACTGGTCTTCA 60.887 57.895 0.00 0.00 0.00 3.02
3592 3915 4.806640 TTTGCATTTCCTCATTCCTTCC 57.193 40.909 0.00 0.00 0.00 3.46
3707 4033 4.024048 TGAACCTTCATGTTCTCTTTTCGC 60.024 41.667 5.61 0.00 43.96 4.70
3729 4055 5.175126 CGCGGATATCGAACTTAAACTCATT 59.825 40.000 0.00 0.00 42.43 2.57
3956 4283 2.555757 AGGTGTGAATTCTCTTTGCAGC 59.444 45.455 7.05 6.04 0.00 5.25
3978 4305 2.023673 TCTTCGCCCCATGCTTTATTG 58.976 47.619 0.00 0.00 38.05 1.90
3988 4315 3.118884 CCATGCTTTATTGCTTCAGCCTT 60.119 43.478 0.00 0.00 41.18 4.35
3999 4326 3.446873 TGCTTCAGCCTTGAGTTTTTCAA 59.553 39.130 0.00 0.00 40.97 2.69
4000 4327 3.798878 GCTTCAGCCTTGAGTTTTTCAAC 59.201 43.478 0.00 0.00 40.12 3.18
4009 4336 6.761242 GCCTTGAGTTTTTCAACTGGTTAAAT 59.239 34.615 0.00 0.00 43.79 1.40
4028 4355 7.942894 GGTTAAATTACTATGGCCTGTAGGAAT 59.057 37.037 16.18 16.18 34.85 3.01
4038 4365 6.569127 TGGCCTGTAGGAATATTGACTAAA 57.431 37.500 3.32 0.00 37.39 1.85
4117 4446 2.546795 GCTGGACAGCGCAGTATCTTAT 60.547 50.000 11.47 0.00 45.29 1.73
4414 4743 3.003689 CGGACCATGCTTGATGATAAACC 59.996 47.826 0.22 0.00 33.31 3.27
4415 4744 3.953612 GGACCATGCTTGATGATAAACCA 59.046 43.478 0.22 0.00 33.31 3.67
4455 4784 5.295292 AGTGCCTGATAGACAATGATTTTCG 59.705 40.000 0.00 0.00 0.00 3.46
4456 4785 4.035558 TGCCTGATAGACAATGATTTTCGC 59.964 41.667 0.00 0.00 0.00 4.70
4569 4949 4.753107 CGACTTAGCCTCCAAGTTTGTAAA 59.247 41.667 0.00 0.00 36.38 2.01
4625 5005 7.872113 ATAGACAAGAAAATCAGTCCCAATC 57.128 36.000 0.00 0.00 0.00 2.67
4637 5017 3.131933 CAGTCCCAATCATCTCTCGAAGT 59.868 47.826 0.00 0.00 0.00 3.01
4653 5033 2.233922 CGAAGTTTCTCCCCTGCTCTTA 59.766 50.000 0.00 0.00 0.00 2.10
4668 5048 2.502130 GCTCTTAGTTGTAGGGAAGCCT 59.498 50.000 0.00 0.00 0.00 4.58
4673 5053 1.079658 AGTTGTAGGGAAGCCTCCTCT 59.920 52.381 0.32 0.00 42.05 3.69
4686 5066 1.152030 TCCTCTTGGCTGGGTGTCT 60.152 57.895 0.00 0.00 0.00 3.41
4687 5067 0.768221 TCCTCTTGGCTGGGTGTCTT 60.768 55.000 0.00 0.00 0.00 3.01
4688 5068 0.607489 CCTCTTGGCTGGGTGTCTTG 60.607 60.000 0.00 0.00 0.00 3.02
4689 5069 0.607489 CTCTTGGCTGGGTGTCTTGG 60.607 60.000 0.00 0.00 0.00 3.61
4690 5070 2.203480 TTGGCTGGGTGTCTTGGC 60.203 61.111 0.00 0.00 0.00 4.52
4691 5071 2.703675 CTTGGCTGGGTGTCTTGGCT 62.704 60.000 0.00 0.00 0.00 4.75
4692 5072 2.674380 GGCTGGGTGTCTTGGCTG 60.674 66.667 0.00 0.00 0.00 4.85
4693 5073 2.674380 GCTGGGTGTCTTGGCTGG 60.674 66.667 0.00 0.00 0.00 4.85
4694 5074 2.034687 CTGGGTGTCTTGGCTGGG 59.965 66.667 0.00 0.00 0.00 4.45
4695 5075 2.776526 TGGGTGTCTTGGCTGGGT 60.777 61.111 0.00 0.00 0.00 4.51
4696 5076 2.282462 GGGTGTCTTGGCTGGGTG 60.282 66.667 0.00 0.00 0.00 4.61
4697 5077 2.515901 GGTGTCTTGGCTGGGTGT 59.484 61.111 0.00 0.00 0.00 4.16
4698 5078 1.600916 GGTGTCTTGGCTGGGTGTC 60.601 63.158 0.00 0.00 0.00 3.67
4699 5079 1.961277 GTGTCTTGGCTGGGTGTCG 60.961 63.158 0.00 0.00 0.00 4.35
4700 5080 2.426023 GTCTTGGCTGGGTGTCGT 59.574 61.111 0.00 0.00 0.00 4.34
4715 5095 3.488721 GGTGTCGTGCGTCATATCTTACT 60.489 47.826 0.00 0.00 0.00 2.24
4720 5100 5.846994 GTCGTGCGTCATATCTTACTAGAAG 59.153 44.000 0.00 0.00 33.20 2.85
4726 5106 5.336055 CGTCATATCTTACTAGAAGGGCAGG 60.336 48.000 0.00 0.00 33.20 4.85
4740 5120 4.705519 CAGGGCGCGCTTTGTTGG 62.706 66.667 32.29 8.62 0.00 3.77
4752 5132 1.272212 CTTTGTTGGGCCGCTTATGTT 59.728 47.619 0.00 0.00 0.00 2.71
4779 5159 9.240159 CTTAGGGTTGTACATGTTTTGTTTTAC 57.760 33.333 2.30 0.00 39.87 2.01
4829 5210 4.513198 TTTACATGCTAGTTGGTTTGGC 57.487 40.909 0.00 0.00 0.00 4.52
4838 5219 3.360423 TTGGTTTGGCGTGTGGGGA 62.360 57.895 0.00 0.00 0.00 4.81
4851 5232 2.035832 GTGTGGGGAAAACAATGGAGTG 59.964 50.000 0.00 0.00 0.00 3.51
4982 5363 1.075374 CTGGGAAGTGATTGGTGGGAA 59.925 52.381 0.00 0.00 0.00 3.97
4996 5377 3.153919 GGTGGGAAAGTGTTTGCTATGA 58.846 45.455 0.00 0.00 0.00 2.15
5013 5394 6.419980 GCTATGAGCAATCCATAGTGAATC 57.580 41.667 0.00 0.00 43.19 2.52
5014 5395 5.936372 GCTATGAGCAATCCATAGTGAATCA 59.064 40.000 0.00 0.00 43.19 2.57
5016 5397 7.201626 GCTATGAGCAATCCATAGTGAATCATC 60.202 40.741 0.00 0.00 43.19 2.92
5018 5399 4.321718 AGCAATCCATAGTGAATCATCCG 58.678 43.478 0.00 0.00 0.00 4.18
5020 5401 4.083643 GCAATCCATAGTGAATCATCCGTG 60.084 45.833 0.00 0.00 0.00 4.94
5021 5402 5.299949 CAATCCATAGTGAATCATCCGTGA 58.700 41.667 0.00 0.00 39.04 4.35
5022 5403 4.590850 TCCATAGTGAATCATCCGTGAG 57.409 45.455 0.00 0.00 37.87 3.51
5023 5404 3.960755 TCCATAGTGAATCATCCGTGAGT 59.039 43.478 0.00 0.00 37.87 3.41
5024 5405 4.053983 CCATAGTGAATCATCCGTGAGTG 58.946 47.826 0.00 0.00 37.87 3.51
5025 5406 4.442052 CCATAGTGAATCATCCGTGAGTGT 60.442 45.833 0.00 0.00 37.87 3.55
5026 5407 5.221244 CCATAGTGAATCATCCGTGAGTGTA 60.221 44.000 0.00 0.00 37.87 2.90
5027 5408 6.450545 CATAGTGAATCATCCGTGAGTGTAT 58.549 40.000 0.00 0.00 37.87 2.29
5028 5409 4.938080 AGTGAATCATCCGTGAGTGTATC 58.062 43.478 0.00 0.00 37.87 2.24
5029 5410 4.402474 AGTGAATCATCCGTGAGTGTATCA 59.598 41.667 0.00 0.00 37.87 2.15
5030 5411 5.069648 AGTGAATCATCCGTGAGTGTATCAT 59.930 40.000 0.00 0.00 40.92 2.45
5031 5412 5.755375 GTGAATCATCCGTGAGTGTATCATT 59.245 40.000 0.00 0.00 40.92 2.57
5032 5413 6.258727 GTGAATCATCCGTGAGTGTATCATTT 59.741 38.462 0.00 0.00 40.92 2.32
5033 5414 6.823182 TGAATCATCCGTGAGTGTATCATTTT 59.177 34.615 0.00 0.00 40.92 1.82
5034 5415 6.851222 ATCATCCGTGAGTGTATCATTTTC 57.149 37.500 0.00 0.00 40.92 2.29
5035 5416 5.729510 TCATCCGTGAGTGTATCATTTTCA 58.270 37.500 0.00 0.00 40.92 2.69
5036 5417 6.348498 TCATCCGTGAGTGTATCATTTTCAT 58.652 36.000 0.00 0.00 40.92 2.57
5037 5418 7.496747 TCATCCGTGAGTGTATCATTTTCATA 58.503 34.615 0.00 0.00 40.92 2.15
5038 5419 8.150296 TCATCCGTGAGTGTATCATTTTCATAT 58.850 33.333 0.00 0.00 40.92 1.78
5039 5420 7.946655 TCCGTGAGTGTATCATTTTCATATC 57.053 36.000 0.00 0.00 40.92 1.63
5064 5445 6.732896 TTTATTGTGGTATTTGTGTGGGTT 57.267 33.333 0.00 0.00 0.00 4.11
5106 6833 1.545651 GGGATTGGGTGTATAGCTGGC 60.546 57.143 0.00 0.00 0.00 4.85
5144 6871 3.807538 GGCCAGCACGTGAGCATG 61.808 66.667 22.23 11.35 36.85 4.06
5187 6921 3.333219 CCTGGGCTTGGAGGCTGA 61.333 66.667 0.00 0.00 41.09 4.26
5192 6926 3.123620 GCTTGGAGGCTGAGCACG 61.124 66.667 6.82 0.00 36.45 5.34
5194 6928 3.602513 CTTGGAGGCTGAGCACGCT 62.603 63.158 6.82 0.00 0.00 5.07
5226 6960 5.616488 GGCACGACCTGTTTATTTCTTTA 57.384 39.130 0.00 0.00 34.51 1.85
5227 6961 6.004408 GGCACGACCTGTTTATTTCTTTAA 57.996 37.500 0.00 0.00 34.51 1.52
5228 6962 5.854866 GGCACGACCTGTTTATTTCTTTAAC 59.145 40.000 0.00 0.00 34.51 2.01
5229 6963 5.854866 GCACGACCTGTTTATTTCTTTAACC 59.145 40.000 0.00 0.00 0.00 2.85
5234 6968 8.228464 CGACCTGTTTATTTCTTTAACCTCTTC 58.772 37.037 0.00 0.00 0.00 2.87
5235 6969 8.990163 ACCTGTTTATTTCTTTAACCTCTTCA 57.010 30.769 0.00 0.00 0.00 3.02
5236 6970 9.067986 ACCTGTTTATTTCTTTAACCTCTTCAG 57.932 33.333 0.00 0.00 0.00 3.02
5277 7011 8.766000 TCACTAATTAAGAAATACTCGTTGCA 57.234 30.769 0.00 0.00 0.00 4.08
5278 7012 8.869897 TCACTAATTAAGAAATACTCGTTGCAG 58.130 33.333 0.00 0.00 0.00 4.41
5279 7013 7.636359 CACTAATTAAGAAATACTCGTTGCAGC 59.364 37.037 0.00 0.00 0.00 5.25
5280 7014 4.577687 TTAAGAAATACTCGTTGCAGCG 57.422 40.909 17.58 17.58 0.00 5.18
5281 7015 0.721718 AGAAATACTCGTTGCAGCGC 59.278 50.000 18.88 0.00 0.00 5.92
5282 7016 0.584054 GAAATACTCGTTGCAGCGCG 60.584 55.000 18.88 15.11 0.00 6.86
5283 7017 2.563086 AAATACTCGTTGCAGCGCGC 62.563 55.000 26.66 26.66 42.89 6.86
5298 7032 2.972505 CGCCACTTGTCGCAACCT 60.973 61.111 0.00 0.00 0.00 3.50
5299 7033 2.639286 GCCACTTGTCGCAACCTG 59.361 61.111 0.00 0.00 0.00 4.00
5300 7034 1.891919 GCCACTTGTCGCAACCTGA 60.892 57.895 0.00 0.00 0.00 3.86
5301 7035 1.845809 GCCACTTGTCGCAACCTGAG 61.846 60.000 0.00 0.00 0.00 3.35
5302 7036 0.249868 CCACTTGTCGCAACCTGAGA 60.250 55.000 0.00 0.00 0.00 3.27
5303 7037 1.143305 CACTTGTCGCAACCTGAGAG 58.857 55.000 0.00 0.00 0.00 3.20
5304 7038 1.040646 ACTTGTCGCAACCTGAGAGA 58.959 50.000 0.00 0.00 0.00 3.10
5305 7039 1.620819 ACTTGTCGCAACCTGAGAGAT 59.379 47.619 0.00 0.00 0.00 2.75
5306 7040 2.037772 ACTTGTCGCAACCTGAGAGATT 59.962 45.455 0.00 0.00 0.00 2.40
5307 7041 2.839486 TGTCGCAACCTGAGAGATTT 57.161 45.000 0.00 0.00 0.00 2.17
5308 7042 3.126001 TGTCGCAACCTGAGAGATTTT 57.874 42.857 0.00 0.00 0.00 1.82
5309 7043 3.476552 TGTCGCAACCTGAGAGATTTTT 58.523 40.909 0.00 0.00 0.00 1.94
5336 7070 8.938047 TTTTCGTAGATCCGTTTATTCAAAAC 57.062 30.769 0.00 0.00 35.04 2.43
5337 7071 6.754206 TTCGTAGATCCGTTTATTCAAAACG 58.246 36.000 14.30 14.30 44.14 3.60
5338 7072 6.365789 TTCGTAGATCCGTTTATTCAAAACGT 59.634 34.615 18.32 4.51 43.53 3.99
5339 7073 7.095691 TTCGTAGATCCGTTTATTCAAAACGTT 60.096 33.333 18.32 0.00 43.53 3.99
5353 7087 8.797266 ATTCAAAACGTTTTATCTCTTCAACC 57.203 30.769 24.79 0.00 0.00 3.77
5354 7088 6.423862 TCAAAACGTTTTATCTCTTCAACCG 58.576 36.000 24.79 8.91 0.00 4.44
5355 7089 5.996669 AAACGTTTTATCTCTTCAACCGT 57.003 34.783 7.96 0.00 0.00 4.83
5356 7090 4.985044 ACGTTTTATCTCTTCAACCGTG 57.015 40.909 0.00 0.00 0.00 4.94
5357 7091 3.185797 ACGTTTTATCTCTTCAACCGTGC 59.814 43.478 0.00 0.00 0.00 5.34
5358 7092 3.720920 CGTTTTATCTCTTCAACCGTGCG 60.721 47.826 0.00 0.00 0.00 5.34
5359 7093 2.736144 TTATCTCTTCAACCGTGCGT 57.264 45.000 0.00 0.00 0.00 5.24
5360 7094 2.273370 TATCTCTTCAACCGTGCGTC 57.727 50.000 0.00 0.00 0.00 5.19
5361 7095 0.389948 ATCTCTTCAACCGTGCGTCC 60.390 55.000 0.00 0.00 0.00 4.79
5362 7096 1.300620 CTCTTCAACCGTGCGTCCA 60.301 57.895 0.00 0.00 0.00 4.02
5363 7097 0.878523 CTCTTCAACCGTGCGTCCAA 60.879 55.000 0.00 0.00 0.00 3.53
5364 7098 0.462225 TCTTCAACCGTGCGTCCAAA 60.462 50.000 0.00 0.00 0.00 3.28
5365 7099 0.591170 CTTCAACCGTGCGTCCAAAT 59.409 50.000 0.00 0.00 0.00 2.32
5366 7100 0.589223 TTCAACCGTGCGTCCAAATC 59.411 50.000 0.00 0.00 0.00 2.17
5367 7101 0.250124 TCAACCGTGCGTCCAAATCT 60.250 50.000 0.00 0.00 0.00 2.40
5368 7102 0.165944 CAACCGTGCGTCCAAATCTC 59.834 55.000 0.00 0.00 0.00 2.75
5369 7103 0.250124 AACCGTGCGTCCAAATCTCA 60.250 50.000 0.00 0.00 0.00 3.27
5370 7104 0.250124 ACCGTGCGTCCAAATCTCAA 60.250 50.000 0.00 0.00 0.00 3.02
5371 7105 0.871722 CCGTGCGTCCAAATCTCAAA 59.128 50.000 0.00 0.00 0.00 2.69
5372 7106 1.399727 CCGTGCGTCCAAATCTCAAAC 60.400 52.381 0.00 0.00 0.00 2.93
5373 7107 1.399727 CGTGCGTCCAAATCTCAAACC 60.400 52.381 0.00 0.00 0.00 3.27
5374 7108 0.871722 TGCGTCCAAATCTCAAACCG 59.128 50.000 0.00 0.00 0.00 4.44
5375 7109 0.872388 GCGTCCAAATCTCAAACCGT 59.128 50.000 0.00 0.00 0.00 4.83
5376 7110 1.265905 GCGTCCAAATCTCAAACCGTT 59.734 47.619 0.00 0.00 0.00 4.44
5377 7111 2.287368 GCGTCCAAATCTCAAACCGTTT 60.287 45.455 0.00 0.00 0.00 3.60
5378 7112 3.794138 GCGTCCAAATCTCAAACCGTTTT 60.794 43.478 0.00 0.00 0.00 2.43
5379 7113 3.972502 CGTCCAAATCTCAAACCGTTTTC 59.027 43.478 0.00 0.00 0.00 2.29
5380 7114 4.496673 CGTCCAAATCTCAAACCGTTTTCA 60.497 41.667 0.00 0.00 0.00 2.69
5381 7115 4.738252 GTCCAAATCTCAAACCGTTTTCAC 59.262 41.667 0.00 0.00 0.00 3.18
5382 7116 4.048504 CCAAATCTCAAACCGTTTTCACC 58.951 43.478 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 96 3.723922 GGGGAAGGGTGCGGCTAA 61.724 66.667 0.00 0.00 0.00 3.09
110 122 4.416738 AGGAAGGGCGGCTTGAGC 62.417 66.667 9.56 0.00 41.14 4.26
193 208 4.790962 CTGATGTGGCTGGCCGCT 62.791 66.667 23.00 10.81 46.12 5.52
256 292 2.224079 AGCTTGTTATGTTGCACGTCTG 59.776 45.455 0.00 0.00 0.00 3.51
326 364 0.312102 GGCTCTGGACAAACTGCAAC 59.688 55.000 0.00 0.00 0.00 4.17
331 369 0.035458 CCTTCGGCTCTGGACAAACT 59.965 55.000 0.00 0.00 0.00 2.66
370 408 5.887598 TGTGCTCTGGATAACAATTAGCAAT 59.112 36.000 0.00 0.00 39.57 3.56
394 447 4.565236 GCTAGCTAGCTGGGATCATCATTT 60.565 45.833 33.71 0.00 45.62 2.32
498 722 6.568869 TCCACCTTAAAAACATTGACAACAG 58.431 36.000 0.00 0.00 0.00 3.16
665 898 2.856032 CGTACTCGTCGTCGTGGT 59.144 61.111 8.79 8.38 38.33 4.16
681 925 2.972505 GCGGATATGGTGTGGGCG 60.973 66.667 0.00 0.00 0.00 6.13
717 961 0.888736 CCAGCACATTGTTCGGGTGA 60.889 55.000 6.42 0.00 34.52 4.02
848 1120 9.132521 CAAAGTTAGTCAGCCTTTTATGAAATG 57.867 33.333 0.00 0.00 0.00 2.32
910 1182 4.540715 AGGTTGGAGGAATTTGATGATCC 58.459 43.478 0.00 0.00 0.00 3.36
939 1211 8.948631 ACTGAAAGGAAAAGGAAAAAGAAATC 57.051 30.769 0.00 0.00 39.30 2.17
956 1228 3.009473 TGGGGAAAGATCTGACTGAAAGG 59.991 47.826 0.00 0.00 39.30 3.11
978 1250 3.963428 AAGTCCAGCTAAATCTGACGT 57.037 42.857 0.00 0.00 36.19 4.34
985 1257 5.450818 TCCACCATAAAGTCCAGCTAAAT 57.549 39.130 0.00 0.00 0.00 1.40
1072 1344 4.424061 TGGTCATGAAATCAAAGAAGCG 57.576 40.909 0.00 0.00 0.00 4.68
1121 1393 0.115745 ACTTTGGGACGGAGGGAGTA 59.884 55.000 0.00 0.00 0.00 2.59
1122 1394 0.767060 AACTTTGGGACGGAGGGAGT 60.767 55.000 0.00 0.00 0.00 3.85
1123 1395 0.321653 CAACTTTGGGACGGAGGGAG 60.322 60.000 0.00 0.00 0.00 4.30
1124 1396 1.057851 ACAACTTTGGGACGGAGGGA 61.058 55.000 0.00 0.00 0.00 4.20
1125 1397 0.688487 TACAACTTTGGGACGGAGGG 59.312 55.000 0.00 0.00 0.00 4.30
1126 1398 1.346722 AGTACAACTTTGGGACGGAGG 59.653 52.381 0.00 0.00 0.00 4.30
1127 1399 2.833631 AGTACAACTTTGGGACGGAG 57.166 50.000 0.00 0.00 0.00 4.63
1128 1400 4.101430 AGTTTAGTACAACTTTGGGACGGA 59.899 41.667 0.00 0.00 32.81 4.69
1129 1401 4.383173 AGTTTAGTACAACTTTGGGACGG 58.617 43.478 0.00 0.00 32.81 4.79
1130 1402 5.524646 TCAAGTTTAGTACAACTTTGGGACG 59.475 40.000 8.25 0.00 43.17 4.79
1131 1403 6.764560 TCTCAAGTTTAGTACAACTTTGGGAC 59.235 38.462 8.25 0.00 43.17 4.46
1132 1404 6.764560 GTCTCAAGTTTAGTACAACTTTGGGA 59.235 38.462 8.25 7.34 43.17 4.37
1133 1405 6.540914 TGTCTCAAGTTTAGTACAACTTTGGG 59.459 38.462 8.25 5.62 43.17 4.12
1134 1406 7.280205 AGTGTCTCAAGTTTAGTACAACTTTGG 59.720 37.037 8.25 5.49 43.17 3.28
1135 1407 8.197988 AGTGTCTCAAGTTTAGTACAACTTTG 57.802 34.615 8.25 5.77 43.17 2.77
1136 1408 8.788325 AAGTGTCTCAAGTTTAGTACAACTTT 57.212 30.769 8.25 0.00 43.17 2.66
1143 1415 9.280174 CCCAAAATAAGTGTCTCAAGTTTAGTA 57.720 33.333 0.00 0.00 0.00 1.82
1144 1416 7.996644 TCCCAAAATAAGTGTCTCAAGTTTAGT 59.003 33.333 0.00 0.00 0.00 2.24
1145 1417 8.290325 GTCCCAAAATAAGTGTCTCAAGTTTAG 58.710 37.037 0.00 0.00 0.00 1.85
1146 1418 7.041644 CGTCCCAAAATAAGTGTCTCAAGTTTA 60.042 37.037 0.00 0.00 0.00 2.01
1147 1419 6.238648 CGTCCCAAAATAAGTGTCTCAAGTTT 60.239 38.462 0.00 0.00 0.00 2.66
1148 1420 5.238650 CGTCCCAAAATAAGTGTCTCAAGTT 59.761 40.000 0.00 0.00 0.00 2.66
1149 1421 4.755123 CGTCCCAAAATAAGTGTCTCAAGT 59.245 41.667 0.00 0.00 0.00 3.16
1150 1422 4.154195 CCGTCCCAAAATAAGTGTCTCAAG 59.846 45.833 0.00 0.00 0.00 3.02
1151 1423 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
1152 1424 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
1153 1425 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
1154 1426 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
1155 1427 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
1156 1428 2.640826 TCCTCCGTCCCAAAATAAGTGT 59.359 45.455 0.00 0.00 0.00 3.55
1157 1429 3.270877 CTCCTCCGTCCCAAAATAAGTG 58.729 50.000 0.00 0.00 0.00 3.16
1158 1430 2.910977 ACTCCTCCGTCCCAAAATAAGT 59.089 45.455 0.00 0.00 0.00 2.24
1159 1431 3.629142 ACTCCTCCGTCCCAAAATAAG 57.371 47.619 0.00 0.00 0.00 1.73
1160 1432 3.198417 GGTACTCCTCCGTCCCAAAATAA 59.802 47.826 0.00 0.00 0.00 1.40
1161 1433 2.767960 GGTACTCCTCCGTCCCAAAATA 59.232 50.000 0.00 0.00 0.00 1.40
1162 1434 1.558294 GGTACTCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
1163 1435 0.978907 GGTACTCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
1164 1436 0.178926 TGGTACTCCTCCGTCCCAAA 60.179 55.000 0.00 0.00 34.23 3.28
1165 1437 0.042131 ATGGTACTCCTCCGTCCCAA 59.958 55.000 0.00 0.00 34.23 4.12
1166 1438 0.928505 TATGGTACTCCTCCGTCCCA 59.071 55.000 0.00 0.00 34.23 4.37
1167 1439 1.326328 GTATGGTACTCCTCCGTCCC 58.674 60.000 0.00 0.00 34.23 4.46
1168 1440 1.680207 GTGTATGGTACTCCTCCGTCC 59.320 57.143 0.00 0.00 34.23 4.79
1169 1441 2.652590 AGTGTATGGTACTCCTCCGTC 58.347 52.381 0.00 0.00 34.23 4.79
1170 1442 2.758979 CAAGTGTATGGTACTCCTCCGT 59.241 50.000 0.00 0.00 34.23 4.69
1171 1443 3.021695 TCAAGTGTATGGTACTCCTCCG 58.978 50.000 0.00 0.00 34.23 4.63
1172 1444 5.128827 TCAATCAAGTGTATGGTACTCCTCC 59.871 44.000 0.00 0.00 34.23 4.30
1173 1445 6.222038 TCAATCAAGTGTATGGTACTCCTC 57.778 41.667 0.00 0.00 34.23 3.71
1174 1446 6.814954 ATCAATCAAGTGTATGGTACTCCT 57.185 37.500 0.00 0.00 34.23 3.69
1175 1447 7.011482 GTGAATCAATCAAGTGTATGGTACTCC 59.989 40.741 0.00 0.00 40.50 3.85
1176 1448 7.011482 GGTGAATCAATCAAGTGTATGGTACTC 59.989 40.741 0.00 0.00 40.50 2.59
1177 1449 6.823689 GGTGAATCAATCAAGTGTATGGTACT 59.176 38.462 0.00 0.00 40.50 2.73
1178 1450 6.597672 TGGTGAATCAATCAAGTGTATGGTAC 59.402 38.462 0.00 0.00 40.50 3.34
1212 1484 1.811965 CTCCGCCAATTCACAATGTCA 59.188 47.619 0.00 0.00 0.00 3.58
1218 1490 0.323302 TACAGCTCCGCCAATTCACA 59.677 50.000 0.00 0.00 0.00 3.58
1301 1573 6.913170 TGAAAACTTTCTGTCAATATCTGGC 58.087 36.000 3.98 0.00 38.02 4.85
1510 1783 9.898152 TTTTCCAAAAATAAGTGGATTGTTCTT 57.102 25.926 0.00 0.00 43.42 2.52
1535 1808 5.562696 CGCTTGTTAGGTGATCACATTGTTT 60.563 40.000 26.47 7.62 0.00 2.83
1547 1820 0.602638 TGGCTGACGCTTGTTAGGTG 60.603 55.000 0.00 0.00 36.09 4.00
1600 1873 4.663091 CGTAAAGTAAAGTTCACGCACAAC 59.337 41.667 0.00 0.00 0.00 3.32
1617 1890 8.447833 TGAAACTAATGGCATAAAGTCGTAAAG 58.552 33.333 13.85 0.00 0.00 1.85
1622 1895 6.422776 ACTGAAACTAATGGCATAAAGTCG 57.577 37.500 13.85 7.47 0.00 4.18
1663 1936 7.038941 AGGGAGTAATATATCGTTCCTTCCAAG 60.039 40.741 8.43 0.00 0.00 3.61
1692 1966 6.720012 AAATGTTCTCCAAAACACACAAAC 57.280 33.333 0.00 0.00 41.65 2.93
1815 2090 4.274147 AGTACACCAATTCACAACCACAA 58.726 39.130 0.00 0.00 0.00 3.33
2182 2462 4.216902 CACCTGTGAGAGCAAATGATGAAA 59.783 41.667 0.00 0.00 0.00 2.69
2329 2609 5.804639 TCACCAAAGCTTAGAGCAGAAATA 58.195 37.500 0.00 0.00 45.56 1.40
2396 2676 5.451242 GCAATTGACACCTCAAAACCTTACA 60.451 40.000 10.34 0.00 39.90 2.41
2438 2718 8.703336 GTTCAGAAATCCAAGCAAGATTTTTAC 58.297 33.333 9.20 4.04 42.53 2.01
2508 2790 7.660112 AGTCATGAAATTTGAACATAAGTGCA 58.340 30.769 0.00 0.00 0.00 4.57
2526 2808 4.115516 GCTCTGAAATAAGCGAGTCATGA 58.884 43.478 0.00 0.00 0.00 3.07
2535 2817 6.467364 GTCTTCGAAAATGCTCTGAAATAAGC 59.533 38.462 0.00 0.00 39.02 3.09
2694 2976 3.355626 GGCACAGGAAAAGTGACTTTC 57.644 47.619 11.44 5.17 41.81 2.62
2780 3070 5.147032 ACCACCAGGAAGAAATTCAAATGA 58.853 37.500 0.00 0.00 38.69 2.57
2816 3106 7.175073 CACAGCAGTGTATTCATCTAATCAG 57.825 40.000 0.22 0.00 40.92 2.90
2856 3148 9.461312 AGTATTCTACATGGCATTTTTCTGTAA 57.539 29.630 0.00 0.00 0.00 2.41
2866 3159 8.324306 AGCATTGTATAGTATTCTACATGGCAT 58.676 33.333 0.00 0.00 33.36 4.40
2919 3212 2.019984 CAAGAGGGCCTACTCATTTGC 58.980 52.381 5.73 0.00 39.97 3.68
2957 3250 3.427098 CCAAGATGCACAGCACAATACTG 60.427 47.826 0.00 0.00 43.04 2.74
2967 3260 2.485426 CCACAGTAACCAAGATGCACAG 59.515 50.000 0.00 0.00 0.00 3.66
2968 3261 2.503331 CCACAGTAACCAAGATGCACA 58.497 47.619 0.00 0.00 0.00 4.57
2969 3262 1.200020 GCCACAGTAACCAAGATGCAC 59.800 52.381 0.00 0.00 0.00 4.57
2970 3263 1.202867 TGCCACAGTAACCAAGATGCA 60.203 47.619 0.00 0.00 0.00 3.96
2971 3264 1.470098 CTGCCACAGTAACCAAGATGC 59.530 52.381 0.00 0.00 0.00 3.91
3446 3759 7.878477 AAGTTTGCAGTAATGATTGACAATG 57.122 32.000 5.14 0.00 0.00 2.82
3448 3761 9.624697 GAATAAGTTTGCAGTAATGATTGACAA 57.375 29.630 0.00 0.00 0.00 3.18
3452 3765 9.027129 CATGGAATAAGTTTGCAGTAATGATTG 57.973 33.333 0.00 0.00 0.00 2.67
3561 3884 9.337091 GAATGAGGAAATGCAAAAATTCAAATG 57.663 29.630 0.00 0.00 0.00 2.32
3562 3885 8.517056 GGAATGAGGAAATGCAAAAATTCAAAT 58.483 29.630 0.00 0.00 0.00 2.32
3592 3915 6.016192 GTGTCTTAAAGAAAGAGGAAAAGGGG 60.016 42.308 0.00 0.00 44.94 4.79
3729 4055 8.797438 CAGTAGTAAGGTATGAGCAGATGAATA 58.203 37.037 0.00 0.00 0.00 1.75
3799 4126 8.000780 AGTTCTTCAATCAAAACTTTAGCTGT 57.999 30.769 0.00 0.00 0.00 4.40
3863 4190 5.244178 GCTTCTAAGATACTAAGGCTGGCTA 59.756 44.000 3.41 0.00 0.00 3.93
3978 4305 3.715628 TGAAAAACTCAAGGCTGAAGC 57.284 42.857 0.00 0.00 41.14 3.86
3999 4326 6.074698 ACAGGCCATAGTAATTTAACCAGT 57.925 37.500 5.01 0.00 0.00 4.00
4000 4327 6.710744 CCTACAGGCCATAGTAATTTAACCAG 59.289 42.308 5.01 0.00 0.00 4.00
4009 4336 7.512746 AGTCAATATTCCTACAGGCCATAGTAA 59.487 37.037 5.01 0.00 34.44 2.24
4028 4355 7.507616 ACATTTTTGGGTGAGGTTTAGTCAATA 59.492 33.333 0.00 0.00 0.00 1.90
4038 4365 1.416030 GCCAACATTTTTGGGTGAGGT 59.584 47.619 3.85 0.00 39.90 3.85
4117 4446 3.520290 ACCAGAATCATAACGCTCGAA 57.480 42.857 0.00 0.00 0.00 3.71
4414 4743 2.843077 CACTAATGTTCACGCTGCTTG 58.157 47.619 0.00 0.00 0.00 4.01
4415 4744 1.197721 GCACTAATGTTCACGCTGCTT 59.802 47.619 0.00 0.00 0.00 3.91
4455 4784 3.072211 GGGTAAATAGGGATACTTGCGC 58.928 50.000 0.00 0.00 0.00 6.09
4456 4785 4.618920 AGGGTAAATAGGGATACTTGCG 57.381 45.455 0.00 0.00 0.00 4.85
4614 4994 3.018423 TCGAGAGATGATTGGGACTGA 57.982 47.619 0.00 0.00 33.31 3.41
4615 4995 3.131933 ACTTCGAGAGATGATTGGGACTG 59.868 47.826 2.28 0.00 41.60 3.51
4625 5005 2.763448 AGGGGAGAAACTTCGAGAGATG 59.237 50.000 2.28 0.00 41.60 2.90
4637 5017 2.979678 ACAACTAAGAGCAGGGGAGAAA 59.020 45.455 0.00 0.00 0.00 2.52
4653 5033 1.079658 AGAGGAGGCTTCCCTACAACT 59.920 52.381 11.97 0.00 45.39 3.16
4668 5048 0.768221 AAGACACCCAGCCAAGAGGA 60.768 55.000 0.00 0.00 36.89 3.71
4673 5053 2.203480 GCCAAGACACCCAGCCAA 60.203 61.111 0.00 0.00 0.00 4.52
4689 5069 2.829043 TATGACGCACGACACCCAGC 62.829 60.000 0.00 0.00 0.00 4.85
4690 5070 0.179111 ATATGACGCACGACACCCAG 60.179 55.000 0.00 0.00 0.00 4.45
4691 5071 0.179121 GATATGACGCACGACACCCA 60.179 55.000 0.00 0.00 0.00 4.51
4692 5072 0.102481 AGATATGACGCACGACACCC 59.898 55.000 0.00 0.00 0.00 4.61
4693 5073 1.922570 AAGATATGACGCACGACACC 58.077 50.000 0.00 0.00 0.00 4.16
4694 5074 3.692576 AGTAAGATATGACGCACGACAC 58.307 45.455 0.00 0.00 0.00 3.67
4695 5075 4.812626 TCTAGTAAGATATGACGCACGACA 59.187 41.667 0.00 0.00 0.00 4.35
4696 5076 5.340010 TCTAGTAAGATATGACGCACGAC 57.660 43.478 0.00 0.00 0.00 4.34
4697 5077 5.049612 CCTTCTAGTAAGATATGACGCACGA 60.050 44.000 0.00 0.00 0.00 4.35
4698 5078 5.147865 CCTTCTAGTAAGATATGACGCACG 58.852 45.833 4.17 0.00 0.00 5.34
4699 5079 5.462405 CCCTTCTAGTAAGATATGACGCAC 58.538 45.833 4.17 0.00 0.00 5.34
4700 5080 4.022242 GCCCTTCTAGTAAGATATGACGCA 60.022 45.833 4.17 0.00 0.00 5.24
4737 5117 2.639065 CTAAGAACATAAGCGGCCCAA 58.361 47.619 0.00 0.00 0.00 4.12
4740 5120 1.134189 ACCCTAAGAACATAAGCGGCC 60.134 52.381 0.00 0.00 0.00 6.13
4752 5132 7.648039 AAACAAAACATGTACAACCCTAAGA 57.352 32.000 0.00 0.00 42.99 2.10
4813 5194 0.881118 CACGCCAAACCAACTAGCAT 59.119 50.000 0.00 0.00 0.00 3.79
4829 5210 1.269448 CTCCATTGTTTTCCCCACACG 59.731 52.381 0.00 0.00 0.00 4.49
4876 5257 4.223032 ACCATGATTCCGTAAAGTCTGTCT 59.777 41.667 0.00 0.00 0.00 3.41
4941 5322 3.588396 AGATTTTCACCATTGGGCCATTT 59.412 39.130 7.26 0.00 37.90 2.32
4943 5324 2.502538 CAGATTTTCACCATTGGGCCAT 59.497 45.455 7.26 0.00 37.90 4.40
4952 5333 3.874383 TCACTTCCCAGATTTTCACCA 57.126 42.857 0.00 0.00 0.00 4.17
4996 5377 4.202398 ACGGATGATTCACTATGGATTGCT 60.202 41.667 0.00 0.00 0.00 3.91
5009 5390 6.851222 AAATGATACACTCACGGATGATTC 57.149 37.500 0.00 0.00 36.48 2.52
5010 5391 6.823182 TGAAAATGATACACTCACGGATGATT 59.177 34.615 0.00 0.00 36.48 2.57
5012 5393 5.729510 TGAAAATGATACACTCACGGATGA 58.270 37.500 0.00 0.00 36.48 2.92
5013 5394 6.609237 ATGAAAATGATACACTCACGGATG 57.391 37.500 0.00 0.00 36.48 3.51
5014 5395 8.370940 AGATATGAAAATGATACACTCACGGAT 58.629 33.333 0.00 0.00 36.48 4.18
5016 5397 7.953158 AGATATGAAAATGATACACTCACGG 57.047 36.000 0.00 0.00 36.48 4.94
5036 5417 8.744652 CCCACACAAATACCACAATAAAAGATA 58.255 33.333 0.00 0.00 0.00 1.98
5037 5418 7.234577 ACCCACACAAATACCACAATAAAAGAT 59.765 33.333 0.00 0.00 0.00 2.40
5038 5419 6.551601 ACCCACACAAATACCACAATAAAAGA 59.448 34.615 0.00 0.00 0.00 2.52
5039 5420 6.754193 ACCCACACAAATACCACAATAAAAG 58.246 36.000 0.00 0.00 0.00 2.27
5072 5453 2.617788 CCAATCCCCTCAAATCACACGA 60.618 50.000 0.00 0.00 0.00 4.35
5164 6898 4.329545 TCCAAGCCCAGGCACGAC 62.330 66.667 12.03 0.00 44.88 4.34
5165 6899 4.020617 CTCCAAGCCCAGGCACGA 62.021 66.667 12.03 1.96 44.88 4.35
5171 6905 2.271497 CTCAGCCTCCAAGCCCAG 59.729 66.667 0.00 0.00 0.00 4.45
5196 6930 3.991051 AGGTCGTGCCGTGTCAGG 61.991 66.667 0.00 0.00 43.70 3.86
5197 6931 2.734723 CAGGTCGTGCCGTGTCAG 60.735 66.667 0.00 0.00 43.70 3.51
5198 6932 2.581208 AAACAGGTCGTGCCGTGTCA 62.581 55.000 0.00 0.00 43.70 3.58
5200 6934 0.034337 ATAAACAGGTCGTGCCGTGT 59.966 50.000 0.00 0.00 43.70 4.49
5211 6945 9.284968 TCTGAAGAGGTTAAAGAAATAAACAGG 57.715 33.333 0.00 0.00 0.00 4.00
5251 6985 9.378551 TGCAACGAGTATTTCTTAATTAGTGAT 57.621 29.630 0.00 0.00 0.00 3.06
5252 6986 8.766000 TGCAACGAGTATTTCTTAATTAGTGA 57.234 30.769 0.00 0.00 0.00 3.41
5253 6987 7.636359 GCTGCAACGAGTATTTCTTAATTAGTG 59.364 37.037 0.00 0.00 0.00 2.74
5254 6988 7.464178 CGCTGCAACGAGTATTTCTTAATTAGT 60.464 37.037 2.68 0.00 34.06 2.24
5255 6989 6.841286 CGCTGCAACGAGTATTTCTTAATTAG 59.159 38.462 2.68 0.00 34.06 1.73
5256 6990 6.701937 CGCTGCAACGAGTATTTCTTAATTA 58.298 36.000 2.68 0.00 34.06 1.40
5257 6991 5.560148 CGCTGCAACGAGTATTTCTTAATT 58.440 37.500 2.68 0.00 34.06 1.40
5258 6992 4.494199 GCGCTGCAACGAGTATTTCTTAAT 60.494 41.667 14.76 0.00 34.06 1.40
5259 6993 3.181524 GCGCTGCAACGAGTATTTCTTAA 60.182 43.478 14.76 0.00 34.06 1.85
5260 6994 2.347452 GCGCTGCAACGAGTATTTCTTA 59.653 45.455 14.76 0.00 34.06 2.10
5261 6995 1.128692 GCGCTGCAACGAGTATTTCTT 59.871 47.619 14.76 0.00 34.06 2.52
5262 6996 0.721718 GCGCTGCAACGAGTATTTCT 59.278 50.000 14.76 0.00 34.06 2.52
5263 6997 0.584054 CGCGCTGCAACGAGTATTTC 60.584 55.000 14.76 0.00 34.06 2.17
5264 6998 1.419922 CGCGCTGCAACGAGTATTT 59.580 52.632 14.76 0.00 34.06 1.40
5265 6999 3.081133 CGCGCTGCAACGAGTATT 58.919 55.556 14.76 0.00 34.06 1.89
5266 7000 3.554692 GCGCGCTGCAACGAGTAT 61.555 61.111 26.67 0.00 45.45 2.12
5282 7016 1.845809 CTCAGGTTGCGACAAGTGGC 61.846 60.000 6.39 0.00 34.76 5.01
5283 7017 0.249868 TCTCAGGTTGCGACAAGTGG 60.250 55.000 6.39 0.00 0.00 4.00
5284 7018 1.143305 CTCTCAGGTTGCGACAAGTG 58.857 55.000 6.39 0.21 0.00 3.16
5285 7019 1.040646 TCTCTCAGGTTGCGACAAGT 58.959 50.000 6.39 0.00 0.00 3.16
5286 7020 2.376808 ATCTCTCAGGTTGCGACAAG 57.623 50.000 6.39 0.31 0.00 3.16
5287 7021 2.839486 AATCTCTCAGGTTGCGACAA 57.161 45.000 6.39 0.00 0.00 3.18
5288 7022 2.839486 AAATCTCTCAGGTTGCGACA 57.161 45.000 6.39 0.00 0.00 4.35
5310 7044 9.384682 GTTTTGAATAAACGGATCTACGAAAAA 57.615 29.630 0.00 0.00 37.61 1.94
5311 7045 7.741216 CGTTTTGAATAAACGGATCTACGAAAA 59.259 33.333 13.31 0.00 46.39 2.29
5312 7046 7.228840 CGTTTTGAATAAACGGATCTACGAAA 58.771 34.615 13.31 0.00 46.39 3.46
5313 7047 6.754206 CGTTTTGAATAAACGGATCTACGAA 58.246 36.000 13.31 0.00 46.39 3.85
5314 7048 6.321873 CGTTTTGAATAAACGGATCTACGA 57.678 37.500 13.31 0.00 46.39 3.43
5327 7061 9.887406 GGTTGAAGAGATAAAACGTTTTGAATA 57.113 29.630 31.26 15.31 0.00 1.75
5328 7062 7.589954 CGGTTGAAGAGATAAAACGTTTTGAAT 59.410 33.333 31.26 20.03 0.00 2.57
5329 7063 6.908284 CGGTTGAAGAGATAAAACGTTTTGAA 59.092 34.615 31.26 16.35 0.00 2.69
5330 7064 6.037391 ACGGTTGAAGAGATAAAACGTTTTGA 59.963 34.615 31.26 17.70 44.24 2.69
5331 7065 6.140108 CACGGTTGAAGAGATAAAACGTTTTG 59.860 38.462 31.26 14.87 44.24 2.44
5332 7066 6.196571 CACGGTTGAAGAGATAAAACGTTTT 58.803 36.000 27.65 27.65 44.24 2.43
5333 7067 5.744490 CACGGTTGAAGAGATAAAACGTTT 58.256 37.500 7.96 7.96 44.24 3.60
5334 7068 4.319261 GCACGGTTGAAGAGATAAAACGTT 60.319 41.667 0.00 0.00 44.24 3.99
5336 7070 3.720920 CGCACGGTTGAAGAGATAAAACG 60.721 47.826 0.00 0.00 39.81 3.60
5337 7071 3.185797 ACGCACGGTTGAAGAGATAAAAC 59.814 43.478 0.00 0.00 0.00 2.43
5338 7072 3.395639 ACGCACGGTTGAAGAGATAAAA 58.604 40.909 0.00 0.00 0.00 1.52
5339 7073 2.991190 GACGCACGGTTGAAGAGATAAA 59.009 45.455 0.00 0.00 0.00 1.40
5340 7074 2.602878 GACGCACGGTTGAAGAGATAA 58.397 47.619 0.00 0.00 0.00 1.75
5341 7075 1.135199 GGACGCACGGTTGAAGAGATA 60.135 52.381 0.00 0.00 0.00 1.98
5342 7076 0.389948 GGACGCACGGTTGAAGAGAT 60.390 55.000 0.00 0.00 0.00 2.75
5343 7077 1.006571 GGACGCACGGTTGAAGAGA 60.007 57.895 0.00 0.00 0.00 3.10
5344 7078 0.878523 TTGGACGCACGGTTGAAGAG 60.879 55.000 0.00 0.00 0.00 2.85
5345 7079 0.462225 TTTGGACGCACGGTTGAAGA 60.462 50.000 0.00 0.00 0.00 2.87
5346 7080 0.591170 ATTTGGACGCACGGTTGAAG 59.409 50.000 0.00 0.00 0.00 3.02
5347 7081 0.589223 GATTTGGACGCACGGTTGAA 59.411 50.000 0.00 0.00 0.00 2.69
5348 7082 0.250124 AGATTTGGACGCACGGTTGA 60.250 50.000 0.00 0.00 0.00 3.18
5349 7083 0.165944 GAGATTTGGACGCACGGTTG 59.834 55.000 0.00 0.00 0.00 3.77
5350 7084 0.250124 TGAGATTTGGACGCACGGTT 60.250 50.000 0.00 0.00 0.00 4.44
5351 7085 0.250124 TTGAGATTTGGACGCACGGT 60.250 50.000 0.00 0.00 0.00 4.83
5352 7086 0.871722 TTTGAGATTTGGACGCACGG 59.128 50.000 0.00 0.00 0.00 4.94
5353 7087 1.399727 GGTTTGAGATTTGGACGCACG 60.400 52.381 0.00 0.00 0.00 5.34
5354 7088 1.399727 CGGTTTGAGATTTGGACGCAC 60.400 52.381 0.00 0.00 0.00 5.34
5355 7089 0.871722 CGGTTTGAGATTTGGACGCA 59.128 50.000 0.00 0.00 0.00 5.24
5356 7090 0.872388 ACGGTTTGAGATTTGGACGC 59.128 50.000 0.00 0.00 0.00 5.19
5357 7091 3.619233 AAACGGTTTGAGATTTGGACG 57.381 42.857 5.12 0.00 0.00 4.79
5358 7092 4.738252 GTGAAAACGGTTTGAGATTTGGAC 59.262 41.667 1.45 0.00 0.00 4.02
5359 7093 4.202070 GGTGAAAACGGTTTGAGATTTGGA 60.202 41.667 1.45 0.00 0.00 3.53
5360 7094 4.048504 GGTGAAAACGGTTTGAGATTTGG 58.951 43.478 1.45 0.00 0.00 3.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.