Multiple sequence alignment - TraesCS3D01G328100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G328100 chr3D 100.000 5765 0 0 1 5765 441141911 441136147 0.000000e+00 10647.0
1 TraesCS3D01G328100 chr3D 88.416 423 44 4 1796 2218 441139878 441139461 6.670000e-139 505.0
2 TraesCS3D01G328100 chr3D 88.416 423 44 4 2034 2451 441140116 441139694 6.670000e-139 505.0
3 TraesCS3D01G328100 chr3B 92.388 3455 164 44 2034 5439 578391632 578388228 0.000000e+00 4831.0
4 TraesCS3D01G328100 chr3B 92.428 2245 114 22 1 2218 578393430 578391215 0.000000e+00 3153.0
5 TraesCS3D01G328100 chr3B 83.588 262 13 14 5512 5764 578286576 578286336 9.730000e-53 219.0
6 TraesCS3D01G328100 chr3A 91.673 2594 157 36 2272 4826 581266194 581263621 0.000000e+00 3539.0
7 TraesCS3D01G328100 chr3A 93.293 1968 75 18 93 2031 581267897 581265958 0.000000e+00 2850.0
8 TraesCS3D01G328100 chr3A 83.900 559 46 20 4778 5303 581263619 581263072 1.440000e-135 494.0
9 TraesCS3D01G328100 chr3A 91.234 308 22 3 1 308 581268475 581268173 1.160000e-111 414.0
10 TraesCS3D01G328100 chr3A 85.802 324 17 11 5451 5764 581262993 581262689 3.350000e-82 316.0
11 TraesCS3D01G328100 chr3A 90.717 237 21 1 2034 2269 581266194 581265958 1.210000e-81 315.0
12 TraesCS3D01G328100 chr6A 91.281 367 26 3 21 386 594367681 594368042 4.010000e-136 496.0
13 TraesCS3D01G328100 chr6A 94.595 259 14 0 479 737 594368039 594368297 9.000000e-108 401.0
14 TraesCS3D01G328100 chr6A 89.300 243 25 1 1067 1308 283735 283493 2.610000e-78 303.0
15 TraesCS3D01G328100 chr6A 78.788 396 31 20 4924 5267 592346296 592346690 3.500000e-52 217.0
16 TraesCS3D01G328100 chr1B 87.812 361 20 8 21 380 184230002 184230339 9.000000e-108 401.0
17 TraesCS3D01G328100 chr1B 77.368 380 45 23 4926 5267 597157611 597157235 2.740000e-43 187.0
18 TraesCS3D01G328100 chr6B 86.066 244 31 3 1067 1308 3380346 3380104 5.730000e-65 259.0
19 TraesCS3D01G328100 chr6B 80.274 365 46 16 4924 5265 604704028 604703667 9.590000e-63 252.0
20 TraesCS3D01G328100 chr1D 79.284 391 34 21 4924 5267 39864704 39864314 4.490000e-56 230.0
21 TraesCS3D01G328100 chr2B 79.255 376 37 14 4921 5265 67894074 67894439 2.090000e-54 224.0
22 TraesCS3D01G328100 chr2D 78.295 387 39 23 4924 5266 11777398 11777783 2.110000e-49 207.0
23 TraesCS3D01G328100 chr2D 77.179 390 41 21 4925 5268 627039149 627038762 3.550000e-42 183.0
24 TraesCS3D01G328100 chr2D 77.199 307 33 14 4923 5194 99502180 99502484 1.670000e-30 145.0
25 TraesCS3D01G328100 chrUn 91.096 146 12 1 1286 1431 51455576 51455720 4.560000e-46 196.0
26 TraesCS3D01G328100 chr5A 88.889 144 15 1 1288 1431 28620246 28620104 5.940000e-40 176.0
27 TraesCS3D01G328100 chr1A 76.692 399 42 19 4924 5276 313266701 313267094 2.140000e-39 174.0
28 TraesCS3D01G328100 chr1A 78.523 149 21 7 5088 5226 712845 712698 2.860000e-13 87.9
29 TraesCS3D01G328100 chr5D 75.667 300 43 16 4924 5196 476618343 476618047 7.840000e-24 122.0
30 TraesCS3D01G328100 chr5D 80.682 176 16 5 4924 5081 377146743 377146568 2.820000e-23 121.0
31 TraesCS3D01G328100 chr7A 83.212 137 16 5 5134 5266 43401492 43401359 1.010000e-22 119.0
32 TraesCS3D01G328100 chr4B 75.281 178 29 12 4999 5175 71221112 71220949 2.880000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G328100 chr3D 441136147 441141911 5764 True 3885.666667 10647 92.277333 1 5765 3 chr3D.!!$R1 5764
1 TraesCS3D01G328100 chr3B 578388228 578393430 5202 True 3992.000000 4831 92.408000 1 5439 2 chr3B.!!$R2 5438
2 TraesCS3D01G328100 chr3A 581262689 581268475 5786 True 1321.333333 3539 89.436500 1 5764 6 chr3A.!!$R1 5763
3 TraesCS3D01G328100 chr6A 594367681 594368297 616 False 448.500000 496 92.938000 21 737 2 chr6A.!!$F2 716


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
563 1057 0.753848 GGAGGACGAAGAGGGAGAGG 60.754 65.000 0.00 0.0 0.00 3.69 F
2040 2570 0.398696 ACACCTAAATGTGCCCACGA 59.601 50.000 0.00 0.0 39.93 4.35 F
2145 2675 0.036105 ATGCGAGCAATCAGTCACCA 60.036 50.000 0.57 0.0 0.00 4.17 F
2281 2811 0.451783 CCTAAATGTGCCCACGAAGC 59.548 55.000 0.00 0.0 0.00 3.86 F
4081 4627 1.759445 TGTCAGAGAAGCATAGGAGGC 59.241 52.381 0.00 0.0 0.00 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2126 2656 0.036105 TGGTGACTGATTGCTCGCAT 60.036 50.000 0.00 0.0 0.00 4.73 R
3304 3850 0.524816 CAACATCTTGCCATGCGAGC 60.525 55.000 0.00 0.0 39.71 5.03 R
4027 4573 1.202452 TGCGTCGAGATGCTTCATGAT 60.202 47.619 16.93 0.0 43.48 2.45 R
4245 4791 0.168128 GCACATCAGGTTTGCCGTAC 59.832 55.000 0.00 0.0 40.50 3.67 R
5717 6397 0.105709 GAGGAGAAGGGAGAGGGGAG 60.106 65.000 0.00 0.0 0.00 4.30 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 79 4.084888 GGTGTTACAGCCACGCGC 62.085 66.667 5.73 0.00 33.56 6.86
205 207 4.510167 ACAAATATGAACTAGGCAGGCT 57.490 40.909 0.38 0.38 0.00 4.58
276 278 5.782047 TGCCACATTCCAACTCTTTTATTG 58.218 37.500 0.00 0.00 0.00 1.90
284 286 8.764287 CATTCCAACTCTTTTATTGAAACAACC 58.236 33.333 0.00 0.00 0.00 3.77
286 288 8.073467 TCCAACTCTTTTATTGAAACAACCTT 57.927 30.769 0.00 0.00 0.00 3.50
287 289 8.194769 TCCAACTCTTTTATTGAAACAACCTTC 58.805 33.333 0.00 0.00 0.00 3.46
563 1057 0.753848 GGAGGACGAAGAGGGAGAGG 60.754 65.000 0.00 0.00 0.00 3.69
767 1285 4.632458 GATCGGCGGCGGAGACTC 62.632 72.222 31.73 15.75 0.00 3.36
771 1289 2.829458 GGCGGCGGAGACTCTACT 60.829 66.667 9.78 0.00 0.00 2.57
783 1303 4.403113 GGAGACTCTACTTTTTCTCCCGAT 59.597 45.833 1.74 0.00 45.91 4.18
881 1404 4.235762 CATTCGGCCCGGATCCGT 62.236 66.667 31.22 9.45 46.49 4.69
882 1405 4.235762 ATTCGGCCCGGATCCGTG 62.236 66.667 31.22 22.77 46.49 4.94
979 1502 2.040606 TTCCCTCCCCCTTCCTCG 59.959 66.667 0.00 0.00 0.00 4.63
980 1503 2.824388 CTTCCCTCCCCCTTCCTCGT 62.824 65.000 0.00 0.00 0.00 4.18
981 1504 2.764547 CCCTCCCCCTTCCTCGTC 60.765 72.222 0.00 0.00 0.00 4.20
982 1505 2.764547 CCTCCCCCTTCCTCGTCC 60.765 72.222 0.00 0.00 0.00 4.79
983 1506 2.764547 CTCCCCCTTCCTCGTCCC 60.765 72.222 0.00 0.00 0.00 4.46
984 1507 3.281787 TCCCCCTTCCTCGTCCCT 61.282 66.667 0.00 0.00 0.00 4.20
985 1508 2.285442 CCCCCTTCCTCGTCCCTT 60.285 66.667 0.00 0.00 0.00 3.95
986 1509 2.368011 CCCCCTTCCTCGTCCCTTC 61.368 68.421 0.00 0.00 0.00 3.46
987 1510 2.368011 CCCCTTCCTCGTCCCTTCC 61.368 68.421 0.00 0.00 0.00 3.46
988 1511 1.306226 CCCTTCCTCGTCCCTTCCT 60.306 63.158 0.00 0.00 0.00 3.36
989 1512 1.331399 CCCTTCCTCGTCCCTTCCTC 61.331 65.000 0.00 0.00 0.00 3.71
999 1522 3.415087 CCTTCCTCCAGCCCCCAG 61.415 72.222 0.00 0.00 0.00 4.45
1026 1549 4.362476 GCAAAACCCAGCGGCCAG 62.362 66.667 2.24 0.00 0.00 4.85
1083 1606 4.806339 CTTCTCGCCCCTCCCCCT 62.806 72.222 0.00 0.00 0.00 4.79
1084 1607 4.798682 TTCTCGCCCCTCCCCCTC 62.799 72.222 0.00 0.00 0.00 4.30
1345 1874 3.184683 CTCAAGTCGCTGCCGCTC 61.185 66.667 0.00 0.00 0.00 5.03
1654 2183 1.615424 GCAGAGGTACCCCAGGGAA 60.615 63.158 7.25 0.00 38.96 3.97
1703 2232 1.884926 GCGCTCATCGGGAAGAAGG 60.885 63.158 0.00 0.00 38.94 3.46
1903 2432 2.093500 AGGACAATGCGAGCAATCAGTA 60.093 45.455 0.57 0.00 0.00 2.74
1910 2439 4.082274 TGCGAGCAATCAGTAAACATTG 57.918 40.909 0.00 0.00 33.77 2.82
2011 2541 2.892784 GGTAACGAAGATAGCTGCCT 57.107 50.000 0.00 0.00 30.55 4.75
2013 2543 3.640592 GGTAACGAAGATAGCTGCCTAC 58.359 50.000 0.00 0.00 30.55 3.18
2014 2544 2.892784 AACGAAGATAGCTGCCTACC 57.107 50.000 0.00 0.00 0.00 3.18
2015 2545 1.776662 ACGAAGATAGCTGCCTACCA 58.223 50.000 0.00 0.00 0.00 3.25
2016 2546 1.683917 ACGAAGATAGCTGCCTACCAG 59.316 52.381 0.00 0.00 44.67 4.00
2017 2547 1.683917 CGAAGATAGCTGCCTACCAGT 59.316 52.381 0.00 0.00 43.71 4.00
2018 2548 2.101582 CGAAGATAGCTGCCTACCAGTT 59.898 50.000 0.00 0.00 43.71 3.16
2019 2549 3.430929 CGAAGATAGCTGCCTACCAGTTT 60.431 47.826 0.00 0.00 43.71 2.66
2020 2550 4.202121 CGAAGATAGCTGCCTACCAGTTTA 60.202 45.833 0.00 0.00 43.71 2.01
2021 2551 5.671493 GAAGATAGCTGCCTACCAGTTTAA 58.329 41.667 0.00 0.00 43.71 1.52
2022 2552 5.024785 AGATAGCTGCCTACCAGTTTAAC 57.975 43.478 0.00 0.00 43.71 2.01
2023 2553 4.469945 AGATAGCTGCCTACCAGTTTAACA 59.530 41.667 0.00 0.00 43.71 2.41
2024 2554 2.779506 AGCTGCCTACCAGTTTAACAC 58.220 47.619 0.00 0.00 43.71 3.32
2025 2555 1.810755 GCTGCCTACCAGTTTAACACC 59.189 52.381 0.00 0.00 43.71 4.16
2026 2556 2.552373 GCTGCCTACCAGTTTAACACCT 60.552 50.000 0.00 0.00 43.71 4.00
2027 2557 3.307199 GCTGCCTACCAGTTTAACACCTA 60.307 47.826 0.00 0.00 43.71 3.08
2028 2558 4.804934 GCTGCCTACCAGTTTAACACCTAA 60.805 45.833 0.00 0.00 43.71 2.69
2029 2559 5.307544 TGCCTACCAGTTTAACACCTAAA 57.692 39.130 0.00 0.00 0.00 1.85
2030 2560 5.883180 TGCCTACCAGTTTAACACCTAAAT 58.117 37.500 0.00 0.00 32.14 1.40
2031 2561 5.708230 TGCCTACCAGTTTAACACCTAAATG 59.292 40.000 0.00 0.00 32.14 2.32
2032 2562 5.708697 GCCTACCAGTTTAACACCTAAATGT 59.291 40.000 0.00 0.00 32.14 2.71
2033 2563 6.349033 GCCTACCAGTTTAACACCTAAATGTG 60.349 42.308 0.00 0.00 42.05 3.21
2034 2564 5.447624 ACCAGTTTAACACCTAAATGTGC 57.552 39.130 0.00 0.00 39.93 4.57
2035 2565 4.279922 ACCAGTTTAACACCTAAATGTGCC 59.720 41.667 0.00 0.00 39.93 5.01
2036 2566 4.321675 CCAGTTTAACACCTAAATGTGCCC 60.322 45.833 0.00 0.00 39.93 5.36
2037 2567 4.279671 CAGTTTAACACCTAAATGTGCCCA 59.720 41.667 0.00 0.00 39.93 5.36
2038 2568 4.279922 AGTTTAACACCTAAATGTGCCCAC 59.720 41.667 0.00 0.00 39.93 4.61
2039 2569 1.243902 AACACCTAAATGTGCCCACG 58.756 50.000 0.00 0.00 39.93 4.94
2040 2570 0.398696 ACACCTAAATGTGCCCACGA 59.601 50.000 0.00 0.00 39.93 4.35
2041 2571 1.202830 ACACCTAAATGTGCCCACGAA 60.203 47.619 0.00 0.00 39.93 3.85
2042 2572 1.468520 CACCTAAATGTGCCCACGAAG 59.531 52.381 0.00 0.00 0.00 3.79
2043 2573 5.637982 ACACCTAAATGTGCCCACGAAGT 62.638 47.826 0.00 0.00 40.34 3.01
2044 2574 2.303600 ACCTAAATGTGCCCACGAAGTA 59.696 45.455 0.00 0.00 41.61 2.24
2045 2575 3.244630 ACCTAAATGTGCCCACGAAGTAA 60.245 43.478 0.00 0.00 41.61 2.24
2046 2576 3.374058 CCTAAATGTGCCCACGAAGTAAG 59.626 47.826 0.00 0.00 41.61 2.34
2047 2577 2.561478 AATGTGCCCACGAAGTAAGT 57.439 45.000 0.00 0.00 41.61 2.24
2048 2578 2.094762 ATGTGCCCACGAAGTAAGTC 57.905 50.000 0.00 0.00 41.61 3.01
2049 2579 1.045407 TGTGCCCACGAAGTAAGTCT 58.955 50.000 0.00 0.00 41.61 3.24
2050 2580 1.414919 TGTGCCCACGAAGTAAGTCTT 59.585 47.619 0.00 0.00 41.61 3.01
2051 2581 2.158871 TGTGCCCACGAAGTAAGTCTTT 60.159 45.455 0.00 0.00 41.61 2.52
2052 2582 2.223377 GTGCCCACGAAGTAAGTCTTTG 59.777 50.000 0.00 0.00 41.61 2.77
2053 2583 2.103432 TGCCCACGAAGTAAGTCTTTGA 59.897 45.455 0.00 0.00 41.61 2.69
2054 2584 3.244422 TGCCCACGAAGTAAGTCTTTGAT 60.244 43.478 0.00 0.00 41.61 2.57
2055 2585 3.751698 GCCCACGAAGTAAGTCTTTGATT 59.248 43.478 0.00 0.00 41.61 2.57
2056 2586 4.933400 GCCCACGAAGTAAGTCTTTGATTA 59.067 41.667 0.00 0.00 41.61 1.75
2057 2587 5.585047 GCCCACGAAGTAAGTCTTTGATTAT 59.415 40.000 0.00 0.00 41.61 1.28
2058 2588 6.093633 GCCCACGAAGTAAGTCTTTGATTATT 59.906 38.462 0.00 0.00 41.61 1.40
2059 2589 7.279313 GCCCACGAAGTAAGTCTTTGATTATTA 59.721 37.037 0.00 0.00 41.61 0.98
2060 2590 9.158233 CCCACGAAGTAAGTCTTTGATTATTAA 57.842 33.333 0.00 0.00 41.61 1.40
2061 2591 9.968743 CCACGAAGTAAGTCTTTGATTATTAAC 57.031 33.333 0.00 0.00 41.61 2.01
2075 2605 9.921637 TTTGATTATTAACTGAAAATGTGGGAC 57.078 29.630 0.00 0.00 0.00 4.46
2076 2606 8.877864 TGATTATTAACTGAAAATGTGGGACT 57.122 30.769 0.00 0.00 0.00 3.85
2077 2607 9.308000 TGATTATTAACTGAAAATGTGGGACTT 57.692 29.630 0.00 0.00 0.00 3.01
2078 2608 9.573133 GATTATTAACTGAAAATGTGGGACTTG 57.427 33.333 0.00 0.00 0.00 3.16
2079 2609 8.698973 TTATTAACTGAAAATGTGGGACTTGA 57.301 30.769 0.00 0.00 0.00 3.02
2080 2610 7.595819 ATTAACTGAAAATGTGGGACTTGAA 57.404 32.000 0.00 0.00 0.00 2.69
2081 2611 7.595819 TTAACTGAAAATGTGGGACTTGAAT 57.404 32.000 0.00 0.00 0.00 2.57
2082 2612 6.484364 AACTGAAAATGTGGGACTTGAATT 57.516 33.333 0.00 0.00 0.00 2.17
2083 2613 5.846203 ACTGAAAATGTGGGACTTGAATTG 58.154 37.500 0.00 0.00 0.00 2.32
2084 2614 4.630111 TGAAAATGTGGGACTTGAATTGC 58.370 39.130 0.00 0.00 0.00 3.56
2085 2615 4.100653 TGAAAATGTGGGACTTGAATTGCA 59.899 37.500 0.00 0.00 0.00 4.08
2086 2616 3.947910 AATGTGGGACTTGAATTGCAG 57.052 42.857 0.00 0.00 0.00 4.41
2087 2617 2.363306 TGTGGGACTTGAATTGCAGT 57.637 45.000 0.00 0.00 0.00 4.40
2088 2618 3.500448 TGTGGGACTTGAATTGCAGTA 57.500 42.857 0.00 0.00 0.00 2.74
2089 2619 3.411446 TGTGGGACTTGAATTGCAGTAG 58.589 45.455 0.00 0.00 0.00 2.57
2090 2620 3.072330 TGTGGGACTTGAATTGCAGTAGA 59.928 43.478 0.00 0.00 0.00 2.59
2091 2621 3.686726 GTGGGACTTGAATTGCAGTAGAG 59.313 47.826 0.00 0.00 0.00 2.43
2092 2622 3.274288 GGGACTTGAATTGCAGTAGAGG 58.726 50.000 0.00 0.00 0.00 3.69
2093 2623 3.307762 GGGACTTGAATTGCAGTAGAGGT 60.308 47.826 0.00 0.00 0.00 3.85
2094 2624 4.081087 GGGACTTGAATTGCAGTAGAGGTA 60.081 45.833 0.00 0.00 0.00 3.08
2095 2625 5.396884 GGGACTTGAATTGCAGTAGAGGTAT 60.397 44.000 0.00 0.00 0.00 2.73
2096 2626 6.183360 GGGACTTGAATTGCAGTAGAGGTATA 60.183 42.308 0.00 0.00 0.00 1.47
2097 2627 7.272978 GGACTTGAATTGCAGTAGAGGTATAA 58.727 38.462 0.00 0.00 0.00 0.98
2098 2628 7.934120 GGACTTGAATTGCAGTAGAGGTATAAT 59.066 37.037 0.00 0.00 0.00 1.28
2099 2629 9.331282 GACTTGAATTGCAGTAGAGGTATAATT 57.669 33.333 0.00 0.00 0.00 1.40
2100 2630 9.331282 ACTTGAATTGCAGTAGAGGTATAATTC 57.669 33.333 0.00 0.00 35.02 2.17
2101 2631 9.553064 CTTGAATTGCAGTAGAGGTATAATTCT 57.447 33.333 0.00 0.00 35.32 2.40
2102 2632 8.893219 TGAATTGCAGTAGAGGTATAATTCTG 57.107 34.615 0.00 0.00 35.32 3.02
2103 2633 7.933577 TGAATTGCAGTAGAGGTATAATTCTGG 59.066 37.037 0.00 0.00 35.32 3.86
2104 2634 6.808321 TTGCAGTAGAGGTATAATTCTGGT 57.192 37.500 0.00 0.00 0.00 4.00
2105 2635 6.406692 TGCAGTAGAGGTATAATTCTGGTC 57.593 41.667 0.00 0.00 0.00 4.02
2106 2636 6.136857 TGCAGTAGAGGTATAATTCTGGTCT 58.863 40.000 0.00 0.00 0.00 3.85
2107 2637 6.040955 TGCAGTAGAGGTATAATTCTGGTCTG 59.959 42.308 0.00 0.00 0.00 3.51
2108 2638 6.517529 GCAGTAGAGGTATAATTCTGGTCTGG 60.518 46.154 0.00 0.00 0.00 3.86
2109 2639 6.015010 CAGTAGAGGTATAATTCTGGTCTGGG 60.015 46.154 0.00 0.00 0.00 4.45
2110 2640 5.157770 AGAGGTATAATTCTGGTCTGGGA 57.842 43.478 0.00 0.00 0.00 4.37
2111 2641 5.731924 AGAGGTATAATTCTGGTCTGGGAT 58.268 41.667 0.00 0.00 0.00 3.85
2112 2642 5.782845 AGAGGTATAATTCTGGTCTGGGATC 59.217 44.000 0.00 0.00 0.00 3.36
2113 2643 5.476983 AGGTATAATTCTGGTCTGGGATCA 58.523 41.667 0.00 0.00 0.00 2.92
2114 2644 6.094302 AGGTATAATTCTGGTCTGGGATCAT 58.906 40.000 0.00 0.00 0.00 2.45
2115 2645 6.013032 AGGTATAATTCTGGTCTGGGATCATG 60.013 42.308 0.00 0.00 0.00 3.07
2116 2646 2.653234 ATTCTGGTCTGGGATCATGC 57.347 50.000 0.00 0.00 0.00 4.06
2117 2647 1.288188 TTCTGGTCTGGGATCATGCA 58.712 50.000 0.00 0.00 0.00 3.96
2118 2648 1.514983 TCTGGTCTGGGATCATGCAT 58.485 50.000 0.00 0.00 0.00 3.96
2119 2649 1.848388 TCTGGTCTGGGATCATGCATT 59.152 47.619 0.00 0.00 0.00 3.56
2120 2650 3.047857 TCTGGTCTGGGATCATGCATTA 58.952 45.455 0.00 0.00 0.00 1.90
2121 2651 3.072038 TCTGGTCTGGGATCATGCATTAG 59.928 47.826 0.00 0.00 0.00 1.73
2122 2652 2.107031 TGGTCTGGGATCATGCATTAGG 59.893 50.000 0.00 0.00 0.00 2.69
2123 2653 2.373169 GGTCTGGGATCATGCATTAGGA 59.627 50.000 0.00 0.00 0.00 2.94
2124 2654 3.406764 GTCTGGGATCATGCATTAGGAC 58.593 50.000 0.00 0.00 0.00 3.85
2125 2655 3.047857 TCTGGGATCATGCATTAGGACA 58.952 45.455 0.00 0.00 0.00 4.02
2126 2656 3.459227 TCTGGGATCATGCATTAGGACAA 59.541 43.478 0.00 0.00 0.00 3.18
2127 2657 4.105217 TCTGGGATCATGCATTAGGACAAT 59.895 41.667 0.00 0.00 0.00 2.71
2128 2658 4.146564 TGGGATCATGCATTAGGACAATG 58.853 43.478 0.00 0.00 0.00 2.82
2133 2663 3.833706 GCATTAGGACAATGCGAGC 57.166 52.632 6.24 0.00 42.79 5.03
2134 2664 1.016627 GCATTAGGACAATGCGAGCA 58.983 50.000 6.24 0.00 42.79 4.26
2135 2665 1.401552 GCATTAGGACAATGCGAGCAA 59.598 47.619 0.57 0.00 42.79 3.91
2136 2666 2.033801 GCATTAGGACAATGCGAGCAAT 59.966 45.455 0.57 0.00 42.79 3.56
2137 2667 3.851105 GCATTAGGACAATGCGAGCAATC 60.851 47.826 0.57 0.52 42.79 2.67
2138 2668 2.689553 TAGGACAATGCGAGCAATCA 57.310 45.000 0.57 0.00 0.00 2.57
2139 2669 1.376543 AGGACAATGCGAGCAATCAG 58.623 50.000 0.57 0.00 0.00 2.90
2140 2670 1.089920 GGACAATGCGAGCAATCAGT 58.910 50.000 0.57 0.00 0.00 3.41
2141 2671 1.063174 GGACAATGCGAGCAATCAGTC 59.937 52.381 0.57 7.75 0.00 3.51
2142 2672 1.733912 GACAATGCGAGCAATCAGTCA 59.266 47.619 0.57 0.00 0.00 3.41
2143 2673 1.466167 ACAATGCGAGCAATCAGTCAC 59.534 47.619 0.57 0.00 0.00 3.67
2144 2674 1.089920 AATGCGAGCAATCAGTCACC 58.910 50.000 0.57 0.00 0.00 4.02
2145 2675 0.036105 ATGCGAGCAATCAGTCACCA 60.036 50.000 0.57 0.00 0.00 4.17
2146 2676 0.036105 TGCGAGCAATCAGTCACCAT 60.036 50.000 0.00 0.00 0.00 3.55
2147 2677 1.089920 GCGAGCAATCAGTCACCATT 58.910 50.000 0.00 0.00 0.00 3.16
2148 2678 1.063174 GCGAGCAATCAGTCACCATTC 59.937 52.381 0.00 0.00 0.00 2.67
2149 2679 2.625737 CGAGCAATCAGTCACCATTCT 58.374 47.619 0.00 0.00 0.00 2.40
2150 2680 2.350804 CGAGCAATCAGTCACCATTCTG 59.649 50.000 0.00 0.00 0.00 3.02
2151 2681 3.341823 GAGCAATCAGTCACCATTCTGT 58.658 45.455 0.00 0.00 33.89 3.41
2152 2682 3.755378 GAGCAATCAGTCACCATTCTGTT 59.245 43.478 0.00 0.00 33.89 3.16
2153 2683 4.910195 AGCAATCAGTCACCATTCTGTTA 58.090 39.130 0.00 0.00 33.89 2.41
2154 2684 5.316167 AGCAATCAGTCACCATTCTGTTAA 58.684 37.500 0.00 0.00 33.89 2.01
2155 2685 5.413833 AGCAATCAGTCACCATTCTGTTAAG 59.586 40.000 0.00 0.00 33.89 1.85
2156 2686 5.412594 GCAATCAGTCACCATTCTGTTAAGA 59.587 40.000 0.00 0.00 33.89 2.10
2157 2687 6.402983 GCAATCAGTCACCATTCTGTTAAGAG 60.403 42.308 0.00 0.00 32.79 2.85
2158 2688 5.808366 TCAGTCACCATTCTGTTAAGAGT 57.192 39.130 0.00 0.00 32.79 3.24
2159 2689 5.541845 TCAGTCACCATTCTGTTAAGAGTG 58.458 41.667 0.00 0.00 39.30 3.51
2160 2690 5.070446 TCAGTCACCATTCTGTTAAGAGTGT 59.930 40.000 0.00 0.00 38.23 3.55
2161 2691 5.178252 CAGTCACCATTCTGTTAAGAGTGTG 59.822 44.000 0.00 4.31 38.23 3.82
2162 2692 5.070446 AGTCACCATTCTGTTAAGAGTGTGA 59.930 40.000 0.00 6.31 38.23 3.58
2163 2693 5.406780 GTCACCATTCTGTTAAGAGTGTGAG 59.593 44.000 13.13 6.01 38.23 3.51
2164 2694 5.304357 TCACCATTCTGTTAAGAGTGTGAGA 59.696 40.000 0.00 0.61 38.23 3.27
2165 2695 5.636965 CACCATTCTGTTAAGAGTGTGAGAG 59.363 44.000 0.00 0.00 38.23 3.20
2166 2696 5.305644 ACCATTCTGTTAAGAGTGTGAGAGT 59.694 40.000 0.00 0.00 38.23 3.24
2167 2697 5.636965 CCATTCTGTTAAGAGTGTGAGAGTG 59.363 44.000 0.00 0.00 38.23 3.51
2168 2698 6.450545 CATTCTGTTAAGAGTGTGAGAGTGA 58.549 40.000 0.00 0.00 35.87 3.41
2169 2699 6.465439 TTCTGTTAAGAGTGTGAGAGTGAA 57.535 37.500 0.00 0.00 32.79 3.18
2170 2700 6.465439 TCTGTTAAGAGTGTGAGAGTGAAA 57.535 37.500 0.00 0.00 0.00 2.69
2171 2701 7.055667 TCTGTTAAGAGTGTGAGAGTGAAAT 57.944 36.000 0.00 0.00 0.00 2.17
2172 2702 7.148641 TCTGTTAAGAGTGTGAGAGTGAAATC 58.851 38.462 0.00 0.00 0.00 2.17
2173 2703 5.920840 TGTTAAGAGTGTGAGAGTGAAATCG 59.079 40.000 0.00 0.00 0.00 3.34
2174 2704 4.592485 AAGAGTGTGAGAGTGAAATCGT 57.408 40.909 0.00 0.00 0.00 3.73
2175 2705 4.167554 AGAGTGTGAGAGTGAAATCGTC 57.832 45.455 0.00 0.00 0.00 4.20
2176 2706 3.057174 AGAGTGTGAGAGTGAAATCGTCC 60.057 47.826 0.00 0.00 0.00 4.79
2177 2707 2.628178 AGTGTGAGAGTGAAATCGTCCA 59.372 45.455 0.00 0.00 0.00 4.02
2178 2708 3.259374 AGTGTGAGAGTGAAATCGTCCAT 59.741 43.478 0.00 0.00 0.00 3.41
2179 2709 3.369147 GTGTGAGAGTGAAATCGTCCATG 59.631 47.826 0.00 0.00 0.00 3.66
2180 2710 2.932614 GTGAGAGTGAAATCGTCCATGG 59.067 50.000 4.97 4.97 0.00 3.66
2181 2711 1.936547 GAGAGTGAAATCGTCCATGGC 59.063 52.381 6.96 0.96 0.00 4.40
2182 2712 1.278985 AGAGTGAAATCGTCCATGGCA 59.721 47.619 6.96 0.00 0.00 4.92
2183 2713 1.398390 GAGTGAAATCGTCCATGGCAC 59.602 52.381 6.96 7.60 0.00 5.01
2213 2743 8.553459 GCAATTGGCATAGTATACATCTAGTT 57.447 34.615 7.72 0.00 43.97 2.24
2214 2744 9.653287 GCAATTGGCATAGTATACATCTAGTTA 57.347 33.333 7.72 0.00 43.97 2.24
2216 2746 9.877178 AATTGGCATAGTATACATCTAGTTAGC 57.123 33.333 5.50 0.00 0.00 3.09
2217 2747 8.417273 TTGGCATAGTATACATCTAGTTAGCA 57.583 34.615 5.50 0.00 0.00 3.49
2218 2748 7.827701 TGGCATAGTATACATCTAGTTAGCAC 58.172 38.462 5.50 0.00 0.00 4.40
2219 2749 7.093902 TGGCATAGTATACATCTAGTTAGCACC 60.094 40.741 5.50 0.00 0.00 5.01
2220 2750 7.122948 GGCATAGTATACATCTAGTTAGCACCT 59.877 40.741 5.50 0.00 0.00 4.00
2221 2751 8.524487 GCATAGTATACATCTAGTTAGCACCTT 58.476 37.037 5.50 0.00 0.00 3.50
2230 2760 9.477484 ACATCTAGTTAGCACCTTATAAATTCG 57.523 33.333 0.00 0.00 0.00 3.34
2231 2761 9.477484 CATCTAGTTAGCACCTTATAAATTCGT 57.523 33.333 0.00 0.00 0.00 3.85
2235 2765 8.429493 AGTTAGCACCTTATAAATTCGTTACC 57.571 34.615 0.00 0.00 0.00 2.85
2236 2766 5.978934 AGCACCTTATAAATTCGTTACCG 57.021 39.130 0.00 0.00 0.00 4.02
2237 2767 5.663456 AGCACCTTATAAATTCGTTACCGA 58.337 37.500 0.00 0.00 42.41 4.69
2281 2811 0.451783 CCTAAATGTGCCCACGAAGC 59.548 55.000 0.00 0.00 0.00 3.86
2315 2845 9.157104 TGATTATTAACTGAAAATGTGCGACTA 57.843 29.630 0.00 0.00 0.00 2.59
2323 2854 5.688823 TGAAAATGTGCGACTAGAATTGTG 58.311 37.500 0.00 0.00 0.00 3.33
2336 2867 9.319143 CGACTAGAATTGTGGAGATTAAATTCT 57.681 33.333 12.56 12.56 46.12 2.40
2345 2876 6.672218 TGTGGAGATTAAATTCTAGTCTGGGA 59.328 38.462 0.00 0.00 0.00 4.37
2362 2893 5.645497 GTCTGGGATCATGCATTAGGATAAC 59.355 44.000 0.00 0.00 28.22 1.89
2363 2894 4.578871 TGGGATCATGCATTAGGATAACG 58.421 43.478 0.00 0.00 28.22 3.18
2367 2898 5.391310 GGATCATGCATTAGGATAACGCAAG 60.391 44.000 0.00 0.00 35.98 4.01
2372 2903 4.097741 TGCATTAGGATAACGCAAGCAATT 59.902 37.500 0.00 0.00 45.62 2.32
2398 2929 1.867233 CCAGTGTGTTCCGAGTGAAAG 59.133 52.381 0.00 0.00 33.94 2.62
2400 2931 2.797156 CAGTGTGTTCCGAGTGAAAGAG 59.203 50.000 0.00 0.00 33.94 2.85
2491 3022 8.724310 AGCTGGATACCTGTTTAATACCTAAAT 58.276 33.333 0.00 0.00 32.14 1.40
2502 3033 7.120579 TGTTTAATACCTAAATGTCAGCCTGTG 59.879 37.037 0.00 0.00 32.14 3.66
2604 3138 4.466015 GGAAATGTATGGGTGATTTGGTGT 59.534 41.667 0.00 0.00 0.00 4.16
2643 3185 6.753107 AGGGTTCCATTTAACTATTCGTTG 57.247 37.500 0.00 0.00 37.05 4.10
2654 3199 5.652744 AACTATTCGTTGTCTTGACACAC 57.347 39.130 2.62 4.89 33.72 3.82
2672 3217 8.402798 TGACACACTCAACATATTTGGTAAAT 57.597 30.769 0.00 0.00 34.90 1.40
2686 3231 2.632028 TGGTAAATTTGCATGTGCTGGT 59.368 40.909 8.59 0.00 42.66 4.00
2735 3281 4.131596 TGTTAGCTTACTTTTCGCCACTT 58.868 39.130 4.27 0.00 0.00 3.16
2782 3328 2.028112 TGTATGTTCTGCGGCTTTCTCT 60.028 45.455 0.00 0.00 0.00 3.10
2839 3385 5.010282 CCTTGTTAATAGTCAAGTTGCCCT 58.990 41.667 0.00 0.00 39.25 5.19
2912 3458 4.253685 TCTCCTTTATTGTGTACTGCTGC 58.746 43.478 0.00 0.00 0.00 5.25
2920 3466 2.207229 TGTACTGCTGCGTGTCCCT 61.207 57.895 7.25 0.00 0.00 4.20
2933 3479 3.189702 GCGTGTCCCTTTTTATGTGCTAA 59.810 43.478 0.00 0.00 0.00 3.09
3304 3850 5.118990 TCAGTGGAGTTTGAAAAGAGACAG 58.881 41.667 0.00 0.00 0.00 3.51
3366 3912 4.566070 CCTTCCTACCGTTTGTCCCAAATA 60.566 45.833 0.00 0.00 0.00 1.40
3385 3931 6.128172 CCAAATATTCACTGTCGCTTCTTTCT 60.128 38.462 0.00 0.00 0.00 2.52
3774 4320 9.065871 GCAACTCAAACTGTTGATATATTTCAC 57.934 33.333 10.29 0.00 45.27 3.18
3931 4477 4.460382 CAGGTTTGTTGCCTATCTTGTGAT 59.540 41.667 0.00 0.00 34.45 3.06
4081 4627 1.759445 TGTCAGAGAAGCATAGGAGGC 59.241 52.381 0.00 0.00 0.00 4.70
4206 4752 2.622436 CTGAGAAATCCTTCCACGACC 58.378 52.381 0.00 0.00 31.28 4.79
4245 4791 2.202623 GGGCTCTCGTACTGCGTG 60.203 66.667 0.00 0.00 42.13 5.34
4287 4833 1.126846 CGCTTGATGTTCGAGGTGTTC 59.873 52.381 0.00 0.00 0.00 3.18
4308 4854 1.371183 CTTCGAACAGGTCCAGCCA 59.629 57.895 0.00 0.00 40.61 4.75
4365 4911 1.375908 GCTGAACTGATGACCGGCA 60.376 57.895 0.00 0.00 0.00 5.69
4399 4946 3.258123 GCTTGAAGGAAAAATGCAGGGTA 59.742 43.478 0.00 0.00 0.00 3.69
4403 4950 4.157656 TGAAGGAAAAATGCAGGGTAATCG 59.842 41.667 0.00 0.00 0.00 3.34
4419 4966 0.318784 ATCGAAATCCTAGCGCGGAC 60.319 55.000 8.83 0.00 35.52 4.79
4538 5085 4.595762 AACCTCTTGTCTTGCGTACTAA 57.404 40.909 0.00 0.00 0.00 2.24
4609 5159 5.522460 TCGAAGTTACAGTTTTGAGAGTTGG 59.478 40.000 0.00 0.00 0.00 3.77
4633 5183 5.803967 GCTGTAAATTCCAATTTGAGCAGAG 59.196 40.000 19.06 7.18 40.82 3.35
4634 5184 6.271488 TGTAAATTCCAATTTGAGCAGAGG 57.729 37.500 7.42 0.00 38.90 3.69
4650 5201 1.152902 AGGACAAACAGCTGCAGCA 60.153 52.632 38.24 0.00 45.16 4.41
4677 5231 6.438741 CAGCAGGAGGAAGATATAGTTATCCA 59.561 42.308 0.00 0.00 35.74 3.41
4717 5271 3.498397 AGTGTTGTAGCCGAAAATGTGAG 59.502 43.478 0.00 0.00 0.00 3.51
4757 5311 4.722194 ACGTGCAATGTCATTTGTCATAC 58.278 39.130 0.00 0.00 0.00 2.39
4765 5319 2.080693 TCATTTGTCATACGGGTGCAC 58.919 47.619 8.80 8.80 0.00 4.57
4774 5328 3.936453 TCATACGGGTGCACAAGTTTATC 59.064 43.478 20.43 0.00 0.00 1.75
4776 5330 2.423577 ACGGGTGCACAAGTTTATCTC 58.576 47.619 20.43 0.00 0.00 2.75
4777 5331 2.038557 ACGGGTGCACAAGTTTATCTCT 59.961 45.455 20.43 0.00 0.00 3.10
4808 5409 9.701098 TTTAACATAGTACAATCGAAGTCACTT 57.299 29.630 0.00 0.00 0.00 3.16
4810 5411 6.688578 ACATAGTACAATCGAAGTCACTTGT 58.311 36.000 0.00 5.29 36.00 3.16
4829 5430 5.185056 ACTTGTTGGGTGCATAAGTTTATCC 59.815 40.000 0.00 0.00 0.00 2.59
5036 5666 7.795482 TGTTAGTGTAACAAGTGTGCTTAAT 57.205 32.000 0.00 0.00 44.95 1.40
5048 5678 7.871973 ACAAGTGTGCTTAATAATTTTCATGCA 59.128 29.630 0.00 0.00 32.87 3.96
5053 5683 9.049523 TGTGCTTAATAATTTTCATGCAAAACA 57.950 25.926 0.00 0.00 36.78 2.83
5072 5702 1.819905 TGGTGACAGTGCTTCGTCA 59.180 52.632 0.00 0.00 39.77 4.35
5234 5895 0.764271 AACATTTTTGGTGGGCAGGG 59.236 50.000 0.00 0.00 0.00 4.45
5235 5896 1.126948 ACATTTTTGGTGGGCAGGGG 61.127 55.000 0.00 0.00 0.00 4.79
5244 5905 1.773804 TGGGCAGGGGCATATGCTA 60.774 57.895 26.12 1.78 43.71 3.49
5255 5916 1.800805 CATATGCTACCAAGAGCCGG 58.199 55.000 0.00 0.00 42.11 6.13
5335 5996 8.660373 AGCTTTATTTTATCTCGTTCACAGAAG 58.340 33.333 0.00 0.00 0.00 2.85
5353 6014 2.032528 CGCTGGTTCTTCTGGGCA 59.967 61.111 0.00 0.00 0.00 5.36
5474 6140 2.596904 AATTGCTGATGCCATGCTTC 57.403 45.000 0.00 0.00 38.71 3.86
5501 6167 1.925946 GCGATTGTTCACACCAGCAAC 60.926 52.381 0.00 0.00 0.00 4.17
5596 6262 2.893404 CCAATACGAACGGGCCGG 60.893 66.667 31.78 15.34 0.00 6.13
5629 6295 4.796231 CGGACCAGGCTTCGACCG 62.796 72.222 7.62 7.62 33.69 4.79
5683 6359 1.075536 CCAAACCCTGAACCCTAGCTT 59.924 52.381 0.00 0.00 0.00 3.74
5702 6382 3.403558 GCCGCCCCCTTCTCTTCT 61.404 66.667 0.00 0.00 0.00 2.85
5703 6383 2.904131 CCGCCCCCTTCTCTTCTC 59.096 66.667 0.00 0.00 0.00 2.87
5704 6384 1.687493 CCGCCCCCTTCTCTTCTCT 60.687 63.158 0.00 0.00 0.00 3.10
5705 6385 1.268283 CCGCCCCCTTCTCTTCTCTT 61.268 60.000 0.00 0.00 0.00 2.85
5706 6386 0.176910 CGCCCCCTTCTCTTCTCTTC 59.823 60.000 0.00 0.00 0.00 2.87
5707 6387 1.578897 GCCCCCTTCTCTTCTCTTCT 58.421 55.000 0.00 0.00 0.00 2.85
5708 6388 1.484653 GCCCCCTTCTCTTCTCTTCTC 59.515 57.143 0.00 0.00 0.00 2.87
5709 6389 2.892301 GCCCCCTTCTCTTCTCTTCTCT 60.892 54.545 0.00 0.00 0.00 3.10
5710 6390 3.449918 CCCCCTTCTCTTCTCTTCTCTT 58.550 50.000 0.00 0.00 0.00 2.85
5711 6391 3.843619 CCCCCTTCTCTTCTCTTCTCTTT 59.156 47.826 0.00 0.00 0.00 2.52
5712 6392 4.081142 CCCCCTTCTCTTCTCTTCTCTTTC 60.081 50.000 0.00 0.00 0.00 2.62
5713 6393 4.081142 CCCCTTCTCTTCTCTTCTCTTTCC 60.081 50.000 0.00 0.00 0.00 3.13
5714 6394 4.381505 CCCTTCTCTTCTCTTCTCTTTCCG 60.382 50.000 0.00 0.00 0.00 4.30
5715 6395 4.381505 CCTTCTCTTCTCTTCTCTTTCCGG 60.382 50.000 0.00 0.00 0.00 5.14
5716 6396 2.494073 TCTCTTCTCTTCTCTTTCCGGC 59.506 50.000 0.00 0.00 0.00 6.13
5717 6397 1.550976 TCTTCTCTTCTCTTTCCGGCC 59.449 52.381 0.00 0.00 0.00 6.13
5718 6398 1.552792 CTTCTCTTCTCTTTCCGGCCT 59.447 52.381 0.00 0.00 0.00 5.19
5719 6399 1.187087 TCTCTTCTCTTTCCGGCCTC 58.813 55.000 0.00 0.00 0.00 4.70
5720 6400 0.176910 CTCTTCTCTTTCCGGCCTCC 59.823 60.000 0.00 0.00 0.00 4.30
5721 6401 1.222113 CTTCTCTTTCCGGCCTCCC 59.778 63.158 0.00 0.00 0.00 4.30
5722 6402 2.258748 CTTCTCTTTCCGGCCTCCCC 62.259 65.000 0.00 0.00 0.00 4.81
5723 6403 2.689034 CTCTTTCCGGCCTCCCCT 60.689 66.667 0.00 0.00 0.00 4.79
5761 6441 2.752807 TAGCCCCTCCCAAATCCGC 61.753 63.158 0.00 0.00 0.00 5.54
5764 6444 2.679342 CCCCTCCCAAATCCGCTCA 61.679 63.158 0.00 0.00 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 1.574428 GCGTGGCTGTAACACCTTG 59.426 57.895 0.00 0.00 35.46 3.61
78 79 1.154672 CGGCATGAACACGTTGTCG 60.155 57.895 0.00 0.00 43.34 4.35
205 207 6.086785 TGTGTCATCAATTGCAGAAATCAA 57.913 33.333 0.00 0.00 0.00 2.57
251 253 2.664402 AAGAGTTGGAATGTGGCAGT 57.336 45.000 0.00 0.00 0.00 4.40
276 278 0.944386 TCGCTGCAGAAGGTTGTTTC 59.056 50.000 20.43 0.00 0.00 2.78
284 286 1.432514 TTGTTAGCTCGCTGCAGAAG 58.567 50.000 20.43 14.88 45.94 2.85
286 288 2.427095 TCTATTGTTAGCTCGCTGCAGA 59.573 45.455 20.43 0.00 45.94 4.26
287 289 2.793790 CTCTATTGTTAGCTCGCTGCAG 59.206 50.000 10.11 10.11 45.94 4.41
349 843 3.322466 CCGGCCTCCCAAGTGAGT 61.322 66.667 0.00 0.00 0.00 3.41
386 880 2.857744 CGGATGGCTACTCGACCCC 61.858 68.421 0.00 0.00 0.00 4.95
563 1057 2.585153 GCGTCCTTCCCCTTCCTC 59.415 66.667 0.00 0.00 0.00 3.71
783 1303 4.373116 GACAGTTCGCCGGCTCCA 62.373 66.667 26.68 4.99 0.00 3.86
861 1384 3.873812 GATCCGGGCCGAATGGGT 61.874 66.667 30.79 6.41 38.44 4.51
881 1404 1.137675 CGTTGGATGGCTCAGATCTCA 59.862 52.381 0.00 0.00 0.00 3.27
882 1405 1.863267 CGTTGGATGGCTCAGATCTC 58.137 55.000 0.00 0.00 0.00 2.75
979 1502 3.412408 GGGGCTGGAGGAAGGGAC 61.412 72.222 0.00 0.00 0.00 4.46
980 1503 4.760220 GGGGGCTGGAGGAAGGGA 62.760 72.222 0.00 0.00 0.00 4.20
982 1505 3.415087 CTGGGGGCTGGAGGAAGG 61.415 72.222 0.00 0.00 0.00 3.46
983 1506 4.120755 GCTGGGGGCTGGAGGAAG 62.121 72.222 0.00 0.00 38.06 3.46
998 1521 2.802724 GGTTTTGCGGGTTTGGGCT 61.803 57.895 0.00 0.00 0.00 5.19
999 1522 2.280524 GGTTTTGCGGGTTTGGGC 60.281 61.111 0.00 0.00 0.00 5.36
1303 1832 2.032528 TGCGGGCTGTTGAGGAAG 59.967 61.111 0.00 0.00 0.00 3.46
1345 1874 2.445654 GGGAGGCAGGAGGAGAGG 60.446 72.222 0.00 0.00 0.00 3.69
1582 2111 2.776526 TGGCCCAGGAACCACAGT 60.777 61.111 0.00 0.00 0.00 3.55
1703 2232 0.896923 TTGATCCATTTGGGCAGCAC 59.103 50.000 0.00 0.00 36.21 4.40
1801 2330 7.872993 TCCAGTCAGTAATTGAAGACTTACTTG 59.127 37.037 5.96 0.00 39.17 3.16
1903 2432 6.823689 ACTCTTACACTCTGAACACAATGTTT 59.176 34.615 0.00 0.00 41.28 2.83
1910 2439 6.129062 CGATTTCACTCTTACACTCTGAACAC 60.129 42.308 0.00 0.00 0.00 3.32
1960 2490 5.207110 AGGTGCTAACTAGATGCATACTG 57.793 43.478 0.00 0.00 39.00 2.74
1966 2496 8.436200 CGAATTTATAAGGTGCTAACTAGATGC 58.564 37.037 0.00 0.00 0.00 3.91
2007 2537 4.978438 TTAGGTGTTAAACTGGTAGGCA 57.022 40.909 0.00 0.00 0.00 4.75
2008 2538 5.708697 ACATTTAGGTGTTAAACTGGTAGGC 59.291 40.000 0.00 0.00 34.22 3.93
2009 2539 6.349033 GCACATTTAGGTGTTAAACTGGTAGG 60.349 42.308 0.00 0.00 40.89 3.18
2010 2540 6.349033 GGCACATTTAGGTGTTAAACTGGTAG 60.349 42.308 0.00 0.00 40.89 3.18
2011 2541 5.474189 GGCACATTTAGGTGTTAAACTGGTA 59.526 40.000 0.00 0.00 40.89 3.25
2012 2542 4.279922 GGCACATTTAGGTGTTAAACTGGT 59.720 41.667 0.00 0.00 40.89 4.00
2013 2543 4.321675 GGGCACATTTAGGTGTTAAACTGG 60.322 45.833 0.00 0.00 40.89 4.00
2014 2544 4.279671 TGGGCACATTTAGGTGTTAAACTG 59.720 41.667 0.00 0.00 40.89 3.16
2015 2545 4.279922 GTGGGCACATTTAGGTGTTAAACT 59.720 41.667 0.00 0.00 40.89 2.66
2016 2546 4.552355 GTGGGCACATTTAGGTGTTAAAC 58.448 43.478 0.00 0.00 40.89 2.01
2017 2547 3.253677 CGTGGGCACATTTAGGTGTTAAA 59.746 43.478 0.00 0.00 40.89 1.52
2018 2548 2.814919 CGTGGGCACATTTAGGTGTTAA 59.185 45.455 0.00 0.00 40.89 2.01
2019 2549 2.038689 TCGTGGGCACATTTAGGTGTTA 59.961 45.455 0.00 0.00 40.89 2.41
2020 2550 1.202830 TCGTGGGCACATTTAGGTGTT 60.203 47.619 0.00 0.00 40.89 3.32
2021 2551 0.398696 TCGTGGGCACATTTAGGTGT 59.601 50.000 0.00 0.00 40.89 4.16
2022 2552 1.468520 CTTCGTGGGCACATTTAGGTG 59.531 52.381 0.00 0.00 41.72 4.00
2023 2553 1.073284 ACTTCGTGGGCACATTTAGGT 59.927 47.619 0.00 0.00 0.00 3.08
2024 2554 1.821216 ACTTCGTGGGCACATTTAGG 58.179 50.000 0.00 0.00 0.00 2.69
2025 2555 4.000988 ACTTACTTCGTGGGCACATTTAG 58.999 43.478 0.00 0.00 0.00 1.85
2026 2556 3.998341 GACTTACTTCGTGGGCACATTTA 59.002 43.478 0.00 0.00 0.00 1.40
2027 2557 2.812011 GACTTACTTCGTGGGCACATTT 59.188 45.455 0.00 0.00 0.00 2.32
2028 2558 2.038557 AGACTTACTTCGTGGGCACATT 59.961 45.455 0.00 0.00 0.00 2.71
2029 2559 1.623811 AGACTTACTTCGTGGGCACAT 59.376 47.619 0.00 0.00 0.00 3.21
2030 2560 1.045407 AGACTTACTTCGTGGGCACA 58.955 50.000 0.00 0.00 0.00 4.57
2031 2561 2.165319 AAGACTTACTTCGTGGGCAC 57.835 50.000 0.00 0.00 32.91 5.01
2032 2562 2.103432 TCAAAGACTTACTTCGTGGGCA 59.897 45.455 0.00 0.00 37.93 5.36
2033 2563 2.762745 TCAAAGACTTACTTCGTGGGC 58.237 47.619 0.00 0.00 37.93 5.36
2034 2564 7.611213 AATAATCAAAGACTTACTTCGTGGG 57.389 36.000 0.00 0.00 37.93 4.61
2035 2565 9.968743 GTTAATAATCAAAGACTTACTTCGTGG 57.031 33.333 0.00 0.00 37.93 4.94
2049 2579 9.921637 GTCCCACATTTTCAGTTAATAATCAAA 57.078 29.630 0.00 0.00 0.00 2.69
2050 2580 9.308000 AGTCCCACATTTTCAGTTAATAATCAA 57.692 29.630 0.00 0.00 0.00 2.57
2051 2581 8.877864 AGTCCCACATTTTCAGTTAATAATCA 57.122 30.769 0.00 0.00 0.00 2.57
2052 2582 9.573133 CAAGTCCCACATTTTCAGTTAATAATC 57.427 33.333 0.00 0.00 0.00 1.75
2053 2583 9.308000 TCAAGTCCCACATTTTCAGTTAATAAT 57.692 29.630 0.00 0.00 0.00 1.28
2054 2584 8.698973 TCAAGTCCCACATTTTCAGTTAATAA 57.301 30.769 0.00 0.00 0.00 1.40
2055 2585 8.698973 TTCAAGTCCCACATTTTCAGTTAATA 57.301 30.769 0.00 0.00 0.00 0.98
2056 2586 7.595819 TTCAAGTCCCACATTTTCAGTTAAT 57.404 32.000 0.00 0.00 0.00 1.40
2057 2587 7.595819 ATTCAAGTCCCACATTTTCAGTTAA 57.404 32.000 0.00 0.00 0.00 2.01
2058 2588 7.432869 CAATTCAAGTCCCACATTTTCAGTTA 58.567 34.615 0.00 0.00 0.00 2.24
2059 2589 6.282930 CAATTCAAGTCCCACATTTTCAGTT 58.717 36.000 0.00 0.00 0.00 3.16
2060 2590 5.739935 GCAATTCAAGTCCCACATTTTCAGT 60.740 40.000 0.00 0.00 0.00 3.41
2061 2591 4.687483 GCAATTCAAGTCCCACATTTTCAG 59.313 41.667 0.00 0.00 0.00 3.02
2062 2592 4.100653 TGCAATTCAAGTCCCACATTTTCA 59.899 37.500 0.00 0.00 0.00 2.69
2063 2593 4.630111 TGCAATTCAAGTCCCACATTTTC 58.370 39.130 0.00 0.00 0.00 2.29
2064 2594 4.101430 ACTGCAATTCAAGTCCCACATTTT 59.899 37.500 0.00 0.00 0.00 1.82
2065 2595 3.642848 ACTGCAATTCAAGTCCCACATTT 59.357 39.130 0.00 0.00 0.00 2.32
2066 2596 3.233507 ACTGCAATTCAAGTCCCACATT 58.766 40.909 0.00 0.00 0.00 2.71
2067 2597 2.880443 ACTGCAATTCAAGTCCCACAT 58.120 42.857 0.00 0.00 0.00 3.21
2068 2598 2.363306 ACTGCAATTCAAGTCCCACA 57.637 45.000 0.00 0.00 0.00 4.17
2069 2599 3.674997 TCTACTGCAATTCAAGTCCCAC 58.325 45.455 0.00 0.00 0.00 4.61
2070 2600 3.307691 CCTCTACTGCAATTCAAGTCCCA 60.308 47.826 0.00 0.00 0.00 4.37
2071 2601 3.274288 CCTCTACTGCAATTCAAGTCCC 58.726 50.000 0.00 0.00 0.00 4.46
2072 2602 3.944087 ACCTCTACTGCAATTCAAGTCC 58.056 45.455 0.00 0.00 0.00 3.85
2073 2603 8.894768 ATTATACCTCTACTGCAATTCAAGTC 57.105 34.615 0.00 0.00 0.00 3.01
2074 2604 9.331282 GAATTATACCTCTACTGCAATTCAAGT 57.669 33.333 0.00 0.00 33.32 3.16
2075 2605 9.553064 AGAATTATACCTCTACTGCAATTCAAG 57.447 33.333 0.00 0.00 34.76 3.02
2076 2606 9.330063 CAGAATTATACCTCTACTGCAATTCAA 57.670 33.333 0.00 0.00 34.76 2.69
2077 2607 7.933577 CCAGAATTATACCTCTACTGCAATTCA 59.066 37.037 0.00 0.00 34.76 2.57
2078 2608 7.934120 ACCAGAATTATACCTCTACTGCAATTC 59.066 37.037 0.00 0.00 33.28 2.17
2079 2609 7.806180 ACCAGAATTATACCTCTACTGCAATT 58.194 34.615 0.00 0.00 0.00 2.32
2080 2610 7.291182 AGACCAGAATTATACCTCTACTGCAAT 59.709 37.037 0.00 0.00 0.00 3.56
2081 2611 6.611642 AGACCAGAATTATACCTCTACTGCAA 59.388 38.462 0.00 0.00 0.00 4.08
2082 2612 6.040955 CAGACCAGAATTATACCTCTACTGCA 59.959 42.308 0.00 0.00 0.00 4.41
2083 2613 6.451393 CAGACCAGAATTATACCTCTACTGC 58.549 44.000 0.00 0.00 0.00 4.40
2084 2614 6.015010 CCCAGACCAGAATTATACCTCTACTG 60.015 46.154 0.00 0.00 0.00 2.74
2085 2615 6.078664 CCCAGACCAGAATTATACCTCTACT 58.921 44.000 0.00 0.00 0.00 2.57
2086 2616 6.075984 TCCCAGACCAGAATTATACCTCTAC 58.924 44.000 0.00 0.00 0.00 2.59
2087 2617 6.289482 TCCCAGACCAGAATTATACCTCTA 57.711 41.667 0.00 0.00 0.00 2.43
2088 2618 5.157770 TCCCAGACCAGAATTATACCTCT 57.842 43.478 0.00 0.00 0.00 3.69
2089 2619 5.544176 TGATCCCAGACCAGAATTATACCTC 59.456 44.000 0.00 0.00 0.00 3.85
2090 2620 5.476983 TGATCCCAGACCAGAATTATACCT 58.523 41.667 0.00 0.00 0.00 3.08
2091 2621 5.825593 TGATCCCAGACCAGAATTATACC 57.174 43.478 0.00 0.00 0.00 2.73
2092 2622 5.645497 GCATGATCCCAGACCAGAATTATAC 59.355 44.000 0.00 0.00 0.00 1.47
2093 2623 5.310331 TGCATGATCCCAGACCAGAATTATA 59.690 40.000 0.00 0.00 0.00 0.98
2094 2624 4.105217 TGCATGATCCCAGACCAGAATTAT 59.895 41.667 0.00 0.00 0.00 1.28
2095 2625 3.459227 TGCATGATCCCAGACCAGAATTA 59.541 43.478 0.00 0.00 0.00 1.40
2096 2626 2.242965 TGCATGATCCCAGACCAGAATT 59.757 45.455 0.00 0.00 0.00 2.17
2097 2627 1.848388 TGCATGATCCCAGACCAGAAT 59.152 47.619 0.00 0.00 0.00 2.40
2098 2628 1.288188 TGCATGATCCCAGACCAGAA 58.712 50.000 0.00 0.00 0.00 3.02
2099 2629 1.514983 ATGCATGATCCCAGACCAGA 58.485 50.000 0.00 0.00 0.00 3.86
2100 2630 2.359981 AATGCATGATCCCAGACCAG 57.640 50.000 0.00 0.00 0.00 4.00
2101 2631 2.107031 CCTAATGCATGATCCCAGACCA 59.893 50.000 0.00 0.00 0.00 4.02
2102 2632 2.373169 TCCTAATGCATGATCCCAGACC 59.627 50.000 0.00 0.00 0.00 3.85
2103 2633 3.181451 TGTCCTAATGCATGATCCCAGAC 60.181 47.826 0.00 1.85 0.00 3.51
2104 2634 3.047857 TGTCCTAATGCATGATCCCAGA 58.952 45.455 0.00 0.00 0.00 3.86
2105 2635 3.497103 TGTCCTAATGCATGATCCCAG 57.503 47.619 0.00 0.00 0.00 4.45
2106 2636 3.949586 TTGTCCTAATGCATGATCCCA 57.050 42.857 0.00 0.00 0.00 4.37
2107 2637 4.778534 CATTGTCCTAATGCATGATCCC 57.221 45.455 0.00 0.00 0.00 3.85
2115 2645 1.016627 TGCTCGCATTGTCCTAATGC 58.983 50.000 13.12 13.12 46.97 3.56
2116 2646 3.313249 TGATTGCTCGCATTGTCCTAATG 59.687 43.478 0.00 0.00 0.00 1.90
2117 2647 3.544684 TGATTGCTCGCATTGTCCTAAT 58.455 40.909 0.00 0.00 0.00 1.73
2118 2648 2.938451 CTGATTGCTCGCATTGTCCTAA 59.062 45.455 0.00 0.00 0.00 2.69
2119 2649 2.093500 ACTGATTGCTCGCATTGTCCTA 60.093 45.455 0.00 0.00 0.00 2.94
2120 2650 1.339438 ACTGATTGCTCGCATTGTCCT 60.339 47.619 0.00 0.00 0.00 3.85
2121 2651 1.063174 GACTGATTGCTCGCATTGTCC 59.937 52.381 0.00 0.00 0.00 4.02
2122 2652 1.733912 TGACTGATTGCTCGCATTGTC 59.266 47.619 0.00 0.68 0.00 3.18
2123 2653 1.466167 GTGACTGATTGCTCGCATTGT 59.534 47.619 0.00 0.00 0.00 2.71
2124 2654 1.202110 GGTGACTGATTGCTCGCATTG 60.202 52.381 0.00 0.00 0.00 2.82
2125 2655 1.089920 GGTGACTGATTGCTCGCATT 58.910 50.000 0.00 0.00 0.00 3.56
2126 2656 0.036105 TGGTGACTGATTGCTCGCAT 60.036 50.000 0.00 0.00 0.00 4.73
2127 2657 0.036105 ATGGTGACTGATTGCTCGCA 60.036 50.000 0.00 0.00 0.00 5.10
2128 2658 1.063174 GAATGGTGACTGATTGCTCGC 59.937 52.381 0.00 0.00 0.00 5.03
2129 2659 2.350804 CAGAATGGTGACTGATTGCTCG 59.649 50.000 0.00 0.00 36.38 5.03
2130 2660 3.341823 ACAGAATGGTGACTGATTGCTC 58.658 45.455 0.00 0.00 43.62 4.26
2131 2661 3.430042 ACAGAATGGTGACTGATTGCT 57.570 42.857 0.00 0.00 43.62 3.91
2132 2662 5.412594 TCTTAACAGAATGGTGACTGATTGC 59.587 40.000 0.00 0.00 35.42 3.56
2133 2663 6.652481 ACTCTTAACAGAATGGTGACTGATTG 59.348 38.462 0.00 0.00 35.42 2.67
2134 2664 6.652481 CACTCTTAACAGAATGGTGACTGATT 59.348 38.462 0.00 0.00 35.42 2.57
2135 2665 6.169094 CACTCTTAACAGAATGGTGACTGAT 58.831 40.000 0.00 0.00 35.42 2.90
2136 2666 5.070446 ACACTCTTAACAGAATGGTGACTGA 59.930 40.000 0.00 0.00 35.42 3.41
2137 2667 5.178252 CACACTCTTAACAGAATGGTGACTG 59.822 44.000 0.00 0.00 35.42 3.51
2138 2668 5.070446 TCACACTCTTAACAGAATGGTGACT 59.930 40.000 0.00 0.00 35.42 3.41
2139 2669 5.297547 TCACACTCTTAACAGAATGGTGAC 58.702 41.667 0.00 0.00 35.42 3.67
2140 2670 5.304357 TCTCACACTCTTAACAGAATGGTGA 59.696 40.000 0.00 0.00 35.42 4.02
2141 2671 5.541845 TCTCACACTCTTAACAGAATGGTG 58.458 41.667 0.00 0.00 35.42 4.17
2142 2672 5.305644 ACTCTCACACTCTTAACAGAATGGT 59.694 40.000 0.00 0.00 43.62 3.55
2143 2673 5.636965 CACTCTCACACTCTTAACAGAATGG 59.363 44.000 0.00 0.00 43.62 3.16
2144 2674 6.450545 TCACTCTCACACTCTTAACAGAATG 58.549 40.000 0.00 0.00 46.00 2.67
2145 2675 6.656632 TCACTCTCACACTCTTAACAGAAT 57.343 37.500 0.00 0.00 0.00 2.40
2146 2676 6.465439 TTCACTCTCACACTCTTAACAGAA 57.535 37.500 0.00 0.00 0.00 3.02
2147 2677 6.465439 TTTCACTCTCACACTCTTAACAGA 57.535 37.500 0.00 0.00 0.00 3.41
2148 2678 6.088749 CGATTTCACTCTCACACTCTTAACAG 59.911 42.308 0.00 0.00 0.00 3.16
2149 2679 5.920840 CGATTTCACTCTCACACTCTTAACA 59.079 40.000 0.00 0.00 0.00 2.41
2150 2680 5.921408 ACGATTTCACTCTCACACTCTTAAC 59.079 40.000 0.00 0.00 0.00 2.01
2151 2681 6.085555 ACGATTTCACTCTCACACTCTTAA 57.914 37.500 0.00 0.00 0.00 1.85
2152 2682 5.335740 GGACGATTTCACTCTCACACTCTTA 60.336 44.000 0.00 0.00 0.00 2.10
2153 2683 4.551388 GACGATTTCACTCTCACACTCTT 58.449 43.478 0.00 0.00 0.00 2.85
2154 2684 3.057174 GGACGATTTCACTCTCACACTCT 60.057 47.826 0.00 0.00 0.00 3.24
2155 2685 3.246619 GGACGATTTCACTCTCACACTC 58.753 50.000 0.00 0.00 0.00 3.51
2156 2686 2.628178 TGGACGATTTCACTCTCACACT 59.372 45.455 0.00 0.00 0.00 3.55
2157 2687 3.026630 TGGACGATTTCACTCTCACAC 57.973 47.619 0.00 0.00 0.00 3.82
2158 2688 3.588955 CATGGACGATTTCACTCTCACA 58.411 45.455 0.00 0.00 0.00 3.58
2159 2689 2.932614 CCATGGACGATTTCACTCTCAC 59.067 50.000 5.56 0.00 0.00 3.51
2160 2690 2.677902 GCCATGGACGATTTCACTCTCA 60.678 50.000 18.40 0.00 0.00 3.27
2161 2691 1.936547 GCCATGGACGATTTCACTCTC 59.063 52.381 18.40 0.00 0.00 3.20
2162 2692 1.278985 TGCCATGGACGATTTCACTCT 59.721 47.619 18.40 0.00 0.00 3.24
2163 2693 1.398390 GTGCCATGGACGATTTCACTC 59.602 52.381 18.40 0.00 0.00 3.51
2164 2694 1.271325 TGTGCCATGGACGATTTCACT 60.271 47.619 18.40 0.00 0.00 3.41
2165 2695 1.164411 TGTGCCATGGACGATTTCAC 58.836 50.000 18.40 12.56 0.00 3.18
2166 2696 2.127271 ATGTGCCATGGACGATTTCA 57.873 45.000 18.40 0.00 0.00 2.69
2167 2697 3.181397 CAAATGTGCCATGGACGATTTC 58.819 45.455 18.40 0.00 0.00 2.17
2168 2698 2.674747 GCAAATGTGCCATGGACGATTT 60.675 45.455 18.40 12.19 45.68 2.17
2169 2699 1.135024 GCAAATGTGCCATGGACGATT 60.135 47.619 18.40 6.33 45.68 3.34
2170 2700 0.457035 GCAAATGTGCCATGGACGAT 59.543 50.000 18.40 0.00 45.68 3.73
2171 2701 1.882311 GCAAATGTGCCATGGACGA 59.118 52.632 18.40 0.00 45.68 4.20
2172 2702 4.481870 GCAAATGTGCCATGGACG 57.518 55.556 18.40 0.00 45.68 4.79
2188 2718 8.553459 AACTAGATGTATACTATGCCAATTGC 57.447 34.615 4.17 0.00 41.77 3.56
2190 2720 9.877178 GCTAACTAGATGTATACTATGCCAATT 57.123 33.333 4.17 0.00 0.00 2.32
2191 2721 9.035890 TGCTAACTAGATGTATACTATGCCAAT 57.964 33.333 4.17 0.00 0.00 3.16
2192 2722 8.304596 GTGCTAACTAGATGTATACTATGCCAA 58.695 37.037 4.17 0.00 0.00 4.52
2193 2723 7.093902 GGTGCTAACTAGATGTATACTATGCCA 60.094 40.741 4.17 0.00 0.00 4.92
2194 2724 7.122948 AGGTGCTAACTAGATGTATACTATGCC 59.877 40.741 4.17 0.00 0.00 4.40
2195 2725 8.057536 AGGTGCTAACTAGATGTATACTATGC 57.942 38.462 4.17 0.00 0.00 3.14
2204 2734 9.477484 CGAATTTATAAGGTGCTAACTAGATGT 57.523 33.333 0.00 0.00 0.00 3.06
2205 2735 9.477484 ACGAATTTATAAGGTGCTAACTAGATG 57.523 33.333 0.00 0.00 0.00 2.90
2209 2739 9.533253 GGTAACGAATTTATAAGGTGCTAACTA 57.467 33.333 0.00 0.00 0.00 2.24
2210 2740 8.429493 GGTAACGAATTTATAAGGTGCTAACT 57.571 34.615 0.00 0.00 0.00 2.24
2230 2760 2.381725 AGGCAGCTAACTTCGGTAAC 57.618 50.000 0.00 0.00 0.00 2.50
2231 2761 2.159338 CGTAGGCAGCTAACTTCGGTAA 60.159 50.000 7.63 0.00 0.00 2.85
2232 2762 1.402968 CGTAGGCAGCTAACTTCGGTA 59.597 52.381 7.63 0.00 0.00 4.02
2233 2763 0.172803 CGTAGGCAGCTAACTTCGGT 59.827 55.000 7.63 0.00 0.00 4.69
2234 2764 0.454600 TCGTAGGCAGCTAACTTCGG 59.545 55.000 13.26 0.00 0.00 4.30
2235 2765 1.132643 ACTCGTAGGCAGCTAACTTCG 59.867 52.381 8.82 8.82 0.00 3.79
2236 2766 2.943449 ACTCGTAGGCAGCTAACTTC 57.057 50.000 0.00 0.00 0.00 3.01
2237 2767 3.679824 AAACTCGTAGGCAGCTAACTT 57.320 42.857 0.00 0.00 0.00 2.66
2238 2768 4.021719 TGTTAAACTCGTAGGCAGCTAACT 60.022 41.667 0.00 0.00 0.00 2.24
2239 2769 4.091075 GTGTTAAACTCGTAGGCAGCTAAC 59.909 45.833 0.00 0.00 0.00 2.34
2240 2770 4.240096 GTGTTAAACTCGTAGGCAGCTAA 58.760 43.478 0.00 0.00 0.00 3.09
2241 2771 3.367703 GGTGTTAAACTCGTAGGCAGCTA 60.368 47.826 0.00 0.00 0.00 3.32
2242 2772 2.612221 GGTGTTAAACTCGTAGGCAGCT 60.612 50.000 0.00 0.00 0.00 4.24
2243 2773 1.730612 GGTGTTAAACTCGTAGGCAGC 59.269 52.381 0.00 0.00 0.00 5.25
2244 2774 3.314541 AGGTGTTAAACTCGTAGGCAG 57.685 47.619 0.00 0.00 0.00 4.85
2323 2854 7.967908 TGATCCCAGACTAGAATTTAATCTCC 58.032 38.462 0.00 0.00 0.00 3.71
2336 2867 4.492646 TCCTAATGCATGATCCCAGACTA 58.507 43.478 0.00 0.00 0.00 2.59
2345 2876 4.083110 GCTTGCGTTATCCTAATGCATGAT 60.083 41.667 21.56 1.12 41.25 2.45
2362 2893 1.806542 ACTGGTGACTAATTGCTTGCG 59.193 47.619 0.00 0.00 0.00 4.85
2363 2894 2.554032 ACACTGGTGACTAATTGCTTGC 59.446 45.455 7.78 0.00 0.00 4.01
2455 2986 6.420913 ACAGGTATCCAGCTATCGTAATTT 57.579 37.500 0.00 0.00 0.00 1.82
2491 3022 0.685097 GTCTAACCCACAGGCTGACA 59.315 55.000 23.66 0.00 36.11 3.58
2582 3116 5.659440 ACACCAAATCACCCATACATTTC 57.341 39.130 0.00 0.00 0.00 2.17
2604 3138 4.779489 GGAACCCTACCAAACTACTCCTAA 59.221 45.833 0.00 0.00 0.00 2.69
2643 3185 6.017109 ACCAAATATGTTGAGTGTGTCAAGAC 60.017 38.462 0.00 0.00 46.18 3.01
2654 3199 9.153721 ACATGCAAATTTACCAAATATGTTGAG 57.846 29.630 0.00 0.00 27.43 3.02
2672 3217 5.657826 AATGTTATACCAGCACATGCAAA 57.342 34.783 6.64 0.00 45.16 3.68
2712 3257 3.746492 AGTGGCGAAAAGTAAGCTAACAG 59.254 43.478 0.00 0.00 0.00 3.16
2723 3268 4.561735 TGGACTAAAAAGTGGCGAAAAG 57.438 40.909 0.00 0.00 0.00 2.27
2728 3274 3.915437 ACATTGGACTAAAAAGTGGCG 57.085 42.857 0.00 0.00 0.00 5.69
2763 3309 2.028112 ACAGAGAAAGCCGCAGAACATA 60.028 45.455 0.00 0.00 0.00 2.29
2772 3318 2.213499 ACAACTTCACAGAGAAAGCCG 58.787 47.619 0.00 0.00 35.40 5.52
2782 3328 2.684001 ACAACGGAGACAACTTCACA 57.316 45.000 0.00 0.00 0.00 3.58
2912 3458 4.454504 AGTTAGCACATAAAAAGGGACACG 59.545 41.667 0.00 0.00 0.00 4.49
2920 3466 6.016943 ACGGCAAGTTAGTTAGCACATAAAAA 60.017 34.615 0.00 0.00 0.00 1.94
2933 3479 4.583073 AGAAAATTTCCACGGCAAGTTAGT 59.417 37.500 1.57 0.00 0.00 2.24
3304 3850 0.524816 CAACATCTTGCCATGCGAGC 60.525 55.000 0.00 0.00 39.71 5.03
3366 3912 6.402222 AGATAAGAAAGAAGCGACAGTGAAT 58.598 36.000 0.00 0.00 0.00 2.57
3385 3931 7.539710 CAGTACACGCAACAGTTAACTAGATAA 59.460 37.037 8.04 0.00 0.00 1.75
3774 4320 8.400186 TCATGTTGATTTATGTGCAGACAATAG 58.600 33.333 0.00 0.00 35.11 1.73
3931 4477 1.806542 GCGGTCAGATGCTGAAAAAGA 59.193 47.619 0.00 0.00 42.46 2.52
4027 4573 1.202452 TGCGTCGAGATGCTTCATGAT 60.202 47.619 16.93 0.00 43.48 2.45
4081 4627 4.406069 CCGCAATACTTGTTCATCAACAG 58.594 43.478 0.00 0.00 43.54 3.16
4245 4791 0.168128 GCACATCAGGTTTGCCGTAC 59.832 55.000 0.00 0.00 40.50 3.67
4287 4833 1.009389 GCTGGACCTGTTCGAAGTCG 61.009 60.000 0.00 0.00 41.45 4.18
4308 4854 5.072872 AGCATATCCTCCTCATACAGCTTTT 59.927 40.000 0.00 0.00 0.00 2.27
4365 4911 0.524862 CTTCAAGCGCTGGCAATCTT 59.475 50.000 12.58 0.00 43.41 2.40
4399 4946 0.387929 TCCGCGCTAGGATTTCGATT 59.612 50.000 5.56 0.00 34.92 3.34
4403 4950 0.876342 CTGGTCCGCGCTAGGATTTC 60.876 60.000 5.56 1.00 43.04 2.17
4419 4966 3.257561 CGGAACTGCGCGATCTGG 61.258 66.667 12.10 0.00 0.00 3.86
4430 4977 2.665603 GGCTCAGGCTTCGGAACT 59.334 61.111 0.00 0.00 38.73 3.01
4454 5001 2.432444 CTTGCTTTAATCCACGGTCCA 58.568 47.619 0.00 0.00 0.00 4.02
4538 5085 6.924913 TCATCTCTAATACAGCTGCCTATT 57.075 37.500 15.27 13.62 0.00 1.73
4609 5159 5.713025 TCTGCTCAAATTGGAATTTACAGC 58.287 37.500 15.15 15.15 40.48 4.40
4633 5183 1.285023 CTGCTGCAGCTGTTTGTCC 59.715 57.895 36.61 7.74 42.66 4.02
4634 5184 4.937781 CTGCTGCAGCTGTTTGTC 57.062 55.556 36.61 8.49 42.66 3.18
4650 5201 3.855668 ACTATATCTTCCTCCTGCTGCT 58.144 45.455 0.00 0.00 0.00 4.24
4677 5231 6.039717 ACAACACTACAAAGCATGTTTCTCAT 59.960 34.615 0.00 0.00 43.63 2.90
4696 5250 3.250040 ACTCACATTTTCGGCTACAACAC 59.750 43.478 0.00 0.00 0.00 3.32
4717 5271 2.542595 ACGTTAGCAGTACAAGTTGCAC 59.457 45.455 1.81 0.00 42.67 4.57
4724 5278 3.135225 ACATTGCACGTTAGCAGTACAA 58.865 40.909 0.57 0.00 46.54 2.41
4757 5311 2.699954 AGAGATAAACTTGTGCACCCG 58.300 47.619 15.69 7.69 0.00 5.28
4789 5390 5.924254 CCAACAAGTGACTTCGATTGTACTA 59.076 40.000 0.00 0.00 34.92 1.82
4805 5406 5.185056 GGATAAACTTATGCACCCAACAAGT 59.815 40.000 0.00 0.00 32.48 3.16
4808 5409 4.704540 CAGGATAAACTTATGCACCCAACA 59.295 41.667 0.00 0.00 34.37 3.33
4810 5411 4.704540 CACAGGATAAACTTATGCACCCAA 59.295 41.667 0.00 0.00 34.37 4.12
4829 5430 1.406539 AGCAGCAAACAAGTTCCACAG 59.593 47.619 0.00 0.00 0.00 3.66
4937 5538 1.152902 GCATATGCACCCCAGAGCA 60.153 57.895 22.84 0.00 43.97 4.26
5048 5678 2.033299 CGAAGCACTGTCACCATGTTTT 59.967 45.455 0.00 0.00 0.00 2.43
5053 5683 0.392706 TGACGAAGCACTGTCACCAT 59.607 50.000 0.00 0.00 40.02 3.55
5060 5690 3.673746 TTTTTCACTGACGAAGCACTG 57.326 42.857 0.00 0.00 0.00 3.66
5119 5769 4.035675 GGGAGGAAAGTATTTTGATCTGCG 59.964 45.833 0.00 0.00 39.27 5.18
5213 5874 2.220313 CCTGCCCACCAAAAATGTTTG 58.780 47.619 0.93 0.93 43.26 2.93
5234 5895 1.528129 GGCTCTTGGTAGCATATGCC 58.472 55.000 23.96 9.68 44.64 4.40
5235 5896 1.151668 CGGCTCTTGGTAGCATATGC 58.848 55.000 20.36 20.36 44.64 3.14
5244 5905 0.625849 AATCCAATCCGGCTCTTGGT 59.374 50.000 22.03 11.93 42.13 3.67
5335 5996 3.435186 GCCCAGAAGAACCAGCGC 61.435 66.667 0.00 0.00 0.00 5.92
5340 6001 2.496899 TCATCTTGCCCAGAAGAACC 57.503 50.000 0.00 0.00 35.60 3.62
5440 6106 8.945057 GCATCAGCAATTTAAAATCCCTAAAAA 58.055 29.630 0.00 0.00 41.58 1.94
5441 6107 7.552330 GGCATCAGCAATTTAAAATCCCTAAAA 59.448 33.333 0.00 0.00 44.61 1.52
5442 6108 7.047271 GGCATCAGCAATTTAAAATCCCTAAA 58.953 34.615 0.00 0.00 44.61 1.85
5443 6109 6.155910 TGGCATCAGCAATTTAAAATCCCTAA 59.844 34.615 0.00 0.00 44.61 2.69
5444 6110 5.660417 TGGCATCAGCAATTTAAAATCCCTA 59.340 36.000 0.00 0.00 44.61 3.53
5445 6111 4.470664 TGGCATCAGCAATTTAAAATCCCT 59.529 37.500 0.00 0.00 44.61 4.20
5446 6112 4.768583 TGGCATCAGCAATTTAAAATCCC 58.231 39.130 0.00 0.00 44.61 3.85
5447 6113 5.277634 GCATGGCATCAGCAATTTAAAATCC 60.278 40.000 0.00 0.00 44.61 3.01
5448 6114 5.526111 AGCATGGCATCAGCAATTTAAAATC 59.474 36.000 11.77 0.00 44.61 2.17
5449 6115 5.433526 AGCATGGCATCAGCAATTTAAAAT 58.566 33.333 11.77 0.00 44.61 1.82
5454 6120 2.737359 CGAAGCATGGCATCAGCAATTT 60.737 45.455 11.77 0.00 44.61 1.82
5457 6123 1.804598 CGAAGCATGGCATCAGCAA 59.195 52.632 11.77 0.00 44.61 3.91
5523 6189 4.058124 GGGAGGCTGAACAATTGTTTTTC 58.942 43.478 24.02 12.88 38.56 2.29
5563 6229 7.476540 TCGTATTGGGCTGTAGTGATATTAT 57.523 36.000 0.00 0.00 0.00 1.28
5564 6230 6.904463 TCGTATTGGGCTGTAGTGATATTA 57.096 37.500 0.00 0.00 0.00 0.98
5565 6231 5.801531 TCGTATTGGGCTGTAGTGATATT 57.198 39.130 0.00 0.00 0.00 1.28
5566 6232 5.539048 GTTCGTATTGGGCTGTAGTGATAT 58.461 41.667 0.00 0.00 0.00 1.63
5691 6371 4.381505 CGGAAAGAGAAGAGAAGAGAAGGG 60.382 50.000 0.00 0.00 0.00 3.95
5702 6382 1.265454 GGGAGGCCGGAAAGAGAAGA 61.265 60.000 5.05 0.00 0.00 2.87
5703 6383 1.222113 GGGAGGCCGGAAAGAGAAG 59.778 63.158 5.05 0.00 0.00 2.85
5704 6384 2.298661 GGGGAGGCCGGAAAGAGAA 61.299 63.158 5.05 0.00 0.00 2.87
5705 6385 2.687566 GGGGAGGCCGGAAAGAGA 60.688 66.667 5.05 0.00 0.00 3.10
5706 6386 2.689034 AGGGGAGGCCGGAAAGAG 60.689 66.667 5.05 0.00 0.00 2.85
5707 6387 2.687566 GAGGGGAGGCCGGAAAGA 60.688 66.667 5.05 0.00 0.00 2.52
5708 6388 2.689034 AGAGGGGAGGCCGGAAAG 60.689 66.667 5.05 0.00 0.00 2.62
5709 6389 2.687566 GAGAGGGGAGGCCGGAAA 60.688 66.667 5.05 0.00 0.00 3.13
5710 6390 4.798682 GGAGAGGGGAGGCCGGAA 62.799 72.222 5.05 0.00 0.00 4.30
5713 6393 4.806339 AAGGGAGAGGGGAGGCCG 62.806 72.222 0.00 0.00 0.00 6.13
5714 6394 2.770475 GAAGGGAGAGGGGAGGCC 60.770 72.222 0.00 0.00 0.00 5.19
5715 6395 1.764454 GAGAAGGGAGAGGGGAGGC 60.764 68.421 0.00 0.00 0.00 4.70
5716 6396 1.074850 GGAGAAGGGAGAGGGGAGG 60.075 68.421 0.00 0.00 0.00 4.30
5717 6397 0.105709 GAGGAGAAGGGAGAGGGGAG 60.106 65.000 0.00 0.00 0.00 4.30
5718 6398 1.939082 CGAGGAGAAGGGAGAGGGGA 61.939 65.000 0.00 0.00 0.00 4.81
5719 6399 1.456705 CGAGGAGAAGGGAGAGGGG 60.457 68.421 0.00 0.00 0.00 4.79
5720 6400 2.131067 GCGAGGAGAAGGGAGAGGG 61.131 68.421 0.00 0.00 0.00 4.30
5721 6401 2.131067 GGCGAGGAGAAGGGAGAGG 61.131 68.421 0.00 0.00 0.00 3.69
5722 6402 2.485795 CGGCGAGGAGAAGGGAGAG 61.486 68.421 0.00 0.00 0.00 3.20
5723 6403 2.440430 CGGCGAGGAGAAGGGAGA 60.440 66.667 0.00 0.00 0.00 3.71
5729 6409 4.189188 GCTACGCGGCGAGGAGAA 62.189 66.667 30.94 2.06 0.00 2.87



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.