Multiple sequence alignment - TraesCS3D01G328000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G328000 chr3D 100.000 5248 0 0 1 5248 441137099 441131852 0.000000e+00 9692.0
1 TraesCS3D01G328000 chr3D 95.627 1052 40 5 1381 2429 61670925 61669877 0.000000e+00 1683.0
2 TraesCS3D01G328000 chr3D 96.388 969 29 4 1458 2421 48628017 48628984 0.000000e+00 1591.0
3 TraesCS3D01G328000 chr3D 95.863 967 30 9 1458 2422 22325166 22326124 0.000000e+00 1555.0
4 TraesCS3D01G328000 chr3D 76.093 389 43 26 111 455 58397537 58397919 1.960000e-34 158.0
5 TraesCS3D01G328000 chr3D 94.845 97 4 1 2529 2624 526509297 526509393 3.270000e-32 150.0
6 TraesCS3D01G328000 chr3D 94.737 95 4 1 2520 2614 180395000 180394907 4.230000e-31 147.0
7 TraesCS3D01G328000 chr3D 87.619 105 12 1 2529 2632 475310590 475310486 2.570000e-23 121.0
8 TraesCS3D01G328000 chr3B 93.728 2009 89 22 2625 4606 578284790 578282792 0.000000e+00 2977.0
9 TraesCS3D01G328000 chr3B 85.520 663 47 22 1 627 578388877 578388228 0.000000e+00 647.0
10 TraesCS3D01G328000 chr3B 87.768 466 25 19 700 1154 578286576 578286132 2.800000e-142 516.0
11 TraesCS3D01G328000 chr3B 94.479 163 8 1 1225 1386 578285871 578285709 3.140000e-62 250.0
12 TraesCS3D01G328000 chr3B 93.333 105 6 1 2427 2531 578285661 578285558 2.530000e-33 154.0
13 TraesCS3D01G328000 chr3A 94.094 1253 56 11 2614 3852 581262048 581260800 0.000000e+00 1888.0
14 TraesCS3D01G328000 chr3A 91.990 774 45 6 3845 4606 581260625 581259857 0.000000e+00 1070.0
15 TraesCS3D01G328000 chr3A 89.895 762 39 21 639 1387 581262993 581262257 0.000000e+00 946.0
16 TraesCS3D01G328000 chr3A 83.969 524 40 20 1 491 581263584 581263072 3.700000e-126 462.0
17 TraesCS3D01G328000 chr5D 96.201 1053 34 5 1373 2423 528524732 528523684 0.000000e+00 1718.0
18 TraesCS3D01G328000 chr5D 78.073 301 28 13 111 381 424170016 424170308 7.040000e-34 156.0
19 TraesCS3D01G328000 chr5D 95.652 92 4 0 2522 2613 240428035 240428126 1.180000e-31 148.0
20 TraesCS3D01G328000 chr5D 75.667 300 43 16 112 384 476618343 476618047 7.140000e-24 122.0
21 TraesCS3D01G328000 chr5D 80.682 176 16 5 112 269 377146743 377146568 2.570000e-23 121.0
22 TraesCS3D01G328000 chr6D 95.347 1053 41 7 1381 2430 56927154 56926107 0.000000e+00 1666.0
23 TraesCS3D01G328000 chr6D 76.942 399 33 22 112 456 82591326 82590933 6.990000e-39 172.0
24 TraesCS3D01G328000 chr6D 76.203 395 37 22 112 454 82597127 82596738 7.040000e-34 156.0
25 TraesCS3D01G328000 chr6D 97.701 87 2 0 2529 2615 78083079 78083165 3.270000e-32 150.0
26 TraesCS3D01G328000 chr6D 97.727 88 1 1 2529 2615 120657661 120657574 3.270000e-32 150.0
27 TraesCS3D01G328000 chr6D 91.919 99 8 0 2528 2626 316232296 316232394 7.090000e-29 139.0
28 TraesCS3D01G328000 chr6D 78.395 162 16 10 113 271 466942957 466942812 2.600000e-13 87.9
29 TraesCS3D01G328000 chr1D 95.411 1046 42 5 1381 2424 447663323 447664364 0.000000e+00 1661.0
30 TraesCS3D01G328000 chr1D 94.971 1034 40 10 1390 2422 475914408 475915430 0.000000e+00 1611.0
31 TraesCS3D01G328000 chr1D 79.284 391 34 21 112 455 39864704 39864314 4.090000e-56 230.0
32 TraesCS3D01G328000 chr1D 76.227 387 48 16 113 456 349796925 349797310 1.170000e-36 165.0
33 TraesCS3D01G328000 chr1D 76.250 400 41 23 112 464 234066533 234066141 4.210000e-36 163.0
34 TraesCS3D01G328000 chr1D 86.842 76 10 0 111 186 261894197 261894122 9.360000e-13 86.1
35 TraesCS3D01G328000 chr7D 94.280 1049 51 9 1385 2429 106306382 106305339 0.000000e+00 1596.0
36 TraesCS3D01G328000 chr7D 96.875 96 2 1 2522 2616 494673687 494673592 5.440000e-35 159.0
37 TraesCS3D01G328000 chr7D 97.753 89 2 0 2528 2616 426558898 426558986 2.530000e-33 154.0
38 TraesCS3D01G328000 chr7D 97.727 88 2 0 2528 2615 22964256 22964343 9.100000e-33 152.0
39 TraesCS3D01G328000 chr7D 94.737 95 5 0 2529 2623 448931401 448931307 1.180000e-31 148.0
40 TraesCS3D01G328000 chr2D 96.909 647 16 3 1793 2436 606757796 606758441 0.000000e+00 1081.0
41 TraesCS3D01G328000 chr2D 88.811 286 31 1 4964 5248 101979972 101979687 3.010000e-92 350.0
42 TraesCS3D01G328000 chr2D 78.295 387 39 23 112 454 11777398 11777783 1.920000e-49 207.0
43 TraesCS3D01G328000 chr2D 77.519 387 44 16 111 454 430224878 430225264 5.360000e-45 193.0
44 TraesCS3D01G328000 chr2D 77.179 390 41 21 113 456 627039149 627038762 3.230000e-42 183.0
45 TraesCS3D01G328000 chr2D 77.199 307 33 14 111 382 99502180 99502484 1.520000e-30 145.0
46 TraesCS3D01G328000 chr2D 93.750 96 6 0 2518 2613 454026168 454026263 1.520000e-30 145.0
47 TraesCS3D01G328000 chr4B 84.211 741 83 23 1397 2132 546822323 546821612 0.000000e+00 689.0
48 TraesCS3D01G328000 chr4B 91.176 102 9 0 2515 2616 23660882 23660781 7.090000e-29 139.0
49 TraesCS3D01G328000 chr4B 75.281 178 29 12 187 363 71221112 71220949 2.620000e-08 71.3
50 TraesCS3D01G328000 chr4A 91.489 188 16 0 5058 5245 548516070 548516257 5.210000e-65 259.0
51 TraesCS3D01G328000 chr4A 87.629 97 12 0 2529 2625 741179114 741179018 4.300000e-21 113.0
52 TraesCS3D01G328000 chr6B 80.274 365 46 16 112 453 604704028 604703667 8.720000e-63 252.0
53 TraesCS3D01G328000 chr6B 82.456 285 48 2 4965 5248 706212854 706213137 1.130000e-61 248.0
54 TraesCS3D01G328000 chr2A 79.096 354 55 6 4603 4956 54634113 54634447 5.290000e-55 226.0
55 TraesCS3D01G328000 chr2A 87.565 193 21 3 4964 5155 54634496 54634686 2.460000e-53 220.0
56 TraesCS3D01G328000 chr2B 79.255 376 37 14 109 453 67894074 67894439 1.900000e-54 224.0
57 TraesCS3D01G328000 chr6A 78.788 396 31 20 112 455 592346296 592346690 3.180000e-52 217.0
58 TraesCS3D01G328000 chr1B 77.368 380 45 23 114 455 597157611 597157235 2.500000e-43 187.0
59 TraesCS3D01G328000 chr1B 76.042 384 52 14 110 455 58755004 58755385 4.210000e-36 163.0
60 TraesCS3D01G328000 chrUn 77.174 368 49 21 112 455 81417157 81417513 1.160000e-41 182.0
61 TraesCS3D01G328000 chrUn 97.674 86 2 0 2529 2614 378270652 378270567 1.180000e-31 148.0
62 TraesCS3D01G328000 chrUn 97.674 86 2 0 2529 2614 447954262 447954347 1.180000e-31 148.0
63 TraesCS3D01G328000 chrUn 94.737 95 4 1 2519 2613 31861201 31861294 4.230000e-31 147.0
64 TraesCS3D01G328000 chrUn 96.552 87 3 0 2529 2615 104668892 104668806 1.520000e-30 145.0
65 TraesCS3D01G328000 chrUn 96.512 86 3 0 2529 2614 320620069 320620154 5.480000e-30 143.0
66 TraesCS3D01G328000 chrUn 92.784 97 7 0 2520 2616 100223832 100223736 1.970000e-29 141.0
67 TraesCS3D01G328000 chrUn 93.617 94 6 0 2522 2615 461112277 461112370 1.970000e-29 141.0
68 TraesCS3D01G328000 chr1A 76.692 399 42 19 112 464 313266701 313267094 1.940000e-39 174.0
69 TraesCS3D01G328000 chr1A 90.196 102 7 3 2529 2628 134992792 134992892 4.270000e-26 130.0
70 TraesCS3D01G328000 chr1A 87.129 101 11 1 2530 2628 590819663 590819563 4.300000e-21 113.0
71 TraesCS3D01G328000 chr1A 92.000 75 6 0 114 188 100100732 100100806 7.190000e-19 106.0
72 TraesCS3D01G328000 chr1A 90.541 74 6 1 111 184 581858045 581857973 4.330000e-16 97.1
73 TraesCS3D01G328000 chr1A 78.523 149 21 7 276 414 712845 712698 2.600000e-13 87.9
74 TraesCS3D01G328000 chr7B 96.703 91 3 0 2529 2619 829828 829738 9.100000e-33 152.0
75 TraesCS3D01G328000 chr4D 92.308 104 7 1 2515 2617 371926913 371926810 4.230000e-31 147.0
76 TraesCS3D01G328000 chr4D 96.512 86 3 0 2528 2613 478671937 478671852 5.480000e-30 143.0
77 TraesCS3D01G328000 chr4D 92.308 78 6 0 111 188 35348637 35348714 1.540000e-20 111.0
78 TraesCS3D01G328000 chr4D 89.744 78 8 0 110 187 488961871 488961948 3.340000e-17 100.0
79 TraesCS3D01G328000 chr4D 75.168 149 34 3 4652 4799 335892150 335892296 3.390000e-07 67.6
80 TraesCS3D01G328000 chr5B 91.304 92 6 2 2540 2630 564604587 564604497 1.980000e-24 124.0
81 TraesCS3D01G328000 chr5B 91.304 92 6 2 2540 2630 564703323 564703233 1.980000e-24 124.0
82 TraesCS3D01G328000 chr5B 91.304 92 6 2 2540 2630 564706336 564706246 1.980000e-24 124.0
83 TraesCS3D01G328000 chr7A 83.212 137 16 5 322 454 43401492 43401359 9.230000e-23 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G328000 chr3D 441131852 441137099 5247 True 9692.00 9692 100.0000 1 5248 1 chr3D.!!$R3 5247
1 TraesCS3D01G328000 chr3D 61669877 61670925 1048 True 1683.00 1683 95.6270 1381 2429 1 chr3D.!!$R1 1048
2 TraesCS3D01G328000 chr3D 48628017 48628984 967 False 1591.00 1591 96.3880 1458 2421 1 chr3D.!!$F2 963
3 TraesCS3D01G328000 chr3D 22325166 22326124 958 False 1555.00 1555 95.8630 1458 2422 1 chr3D.!!$F1 964
4 TraesCS3D01G328000 chr3B 578282792 578286576 3784 True 974.25 2977 92.3270 700 4606 4 chr3B.!!$R2 3906
5 TraesCS3D01G328000 chr3B 578388228 578388877 649 True 647.00 647 85.5200 1 627 1 chr3B.!!$R1 626
6 TraesCS3D01G328000 chr3A 581259857 581263584 3727 True 1091.50 1888 89.9870 1 4606 4 chr3A.!!$R1 4605
7 TraesCS3D01G328000 chr5D 528523684 528524732 1048 True 1718.00 1718 96.2010 1373 2423 1 chr5D.!!$R3 1050
8 TraesCS3D01G328000 chr6D 56926107 56927154 1047 True 1666.00 1666 95.3470 1381 2430 1 chr6D.!!$R1 1049
9 TraesCS3D01G328000 chr1D 447663323 447664364 1041 False 1661.00 1661 95.4110 1381 2424 1 chr1D.!!$F2 1043
10 TraesCS3D01G328000 chr1D 475914408 475915430 1022 False 1611.00 1611 94.9710 1390 2422 1 chr1D.!!$F3 1032
11 TraesCS3D01G328000 chr7D 106305339 106306382 1043 True 1596.00 1596 94.2800 1385 2429 1 chr7D.!!$R1 1044
12 TraesCS3D01G328000 chr2D 606757796 606758441 645 False 1081.00 1081 96.9090 1793 2436 1 chr2D.!!$F5 643
13 TraesCS3D01G328000 chr4B 546821612 546822323 711 True 689.00 689 84.2110 1397 2132 1 chr4B.!!$R3 735
14 TraesCS3D01G328000 chr2A 54634113 54634686 573 False 223.00 226 83.3305 4603 5155 2 chr2A.!!$F1 552

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
908 976 0.176910 CTCTTCTCTTTCCGGCCTCC 59.823 60.0 0.0 0.0 0.0 4.3 F
2506 2857 0.033991 CCGAGGAGAGTTCAGAGGGA 60.034 60.0 0.0 0.0 0.0 4.2 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2599 2950 0.107459 ACGTACTACTCCCTCCGTCC 60.107 60.000 0.0 0.0 0.0 4.79 R
4304 5623 1.004277 GGGCAATGTCACAGGGAAGTA 59.996 52.381 0.0 0.0 0.0 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
224 242 7.795482 TGTTAGTGTAACAAGTGTGCTTAAT 57.205 32.000 0.00 0.00 44.95 1.40
236 254 7.871973 ACAAGTGTGCTTAATAATTTTCATGCA 59.128 29.630 0.00 0.00 32.87 3.96
241 259 9.049523 TGTGCTTAATAATTTTCATGCAAAACA 57.950 25.926 0.00 0.00 36.78 2.83
260 278 1.819905 TGGTGACAGTGCTTCGTCA 59.180 52.632 0.00 0.00 39.77 4.35
422 471 0.764271 AACATTTTTGGTGGGCAGGG 59.236 50.000 0.00 0.00 0.00 4.45
423 472 1.126948 ACATTTTTGGTGGGCAGGGG 61.127 55.000 0.00 0.00 0.00 4.79
432 481 1.773804 TGGGCAGGGGCATATGCTA 60.774 57.895 26.12 1.78 43.71 3.49
443 492 1.800805 CATATGCTACCAAGAGCCGG 58.199 55.000 0.00 0.00 42.11 6.13
523 572 8.660373 AGCTTTATTTTATCTCGTTCACAGAAG 58.340 33.333 0.00 0.00 0.00 2.85
541 590 2.032528 CGCTGGTTCTTCTGGGCA 59.967 61.111 0.00 0.00 0.00 5.36
662 716 2.596904 AATTGCTGATGCCATGCTTC 57.403 45.000 0.00 0.00 38.71 3.86
689 743 1.925946 GCGATTGTTCACACCAGCAAC 60.926 52.381 0.00 0.00 0.00 4.17
784 838 2.893404 CCAATACGAACGGGCCGG 60.893 66.667 31.78 15.34 0.00 6.13
817 871 4.796231 CGGACCAGGCTTCGACCG 62.796 72.222 7.62 7.62 33.69 4.79
890 958 3.403558 GCCGCCCCCTTCTCTTCT 61.404 66.667 0.00 0.00 0.00 2.85
891 959 2.904131 CCGCCCCCTTCTCTTCTC 59.096 66.667 0.00 0.00 0.00 2.87
892 960 1.687493 CCGCCCCCTTCTCTTCTCT 60.687 63.158 0.00 0.00 0.00 3.10
893 961 1.268283 CCGCCCCCTTCTCTTCTCTT 61.268 60.000 0.00 0.00 0.00 2.85
897 965 2.892301 GCCCCCTTCTCTTCTCTTCTCT 60.892 54.545 0.00 0.00 0.00 3.10
898 966 3.449918 CCCCCTTCTCTTCTCTTCTCTT 58.550 50.000 0.00 0.00 0.00 2.85
899 967 3.843619 CCCCCTTCTCTTCTCTTCTCTTT 59.156 47.826 0.00 0.00 0.00 2.52
900 968 4.081142 CCCCCTTCTCTTCTCTTCTCTTTC 60.081 50.000 0.00 0.00 0.00 2.62
901 969 4.081142 CCCCTTCTCTTCTCTTCTCTTTCC 60.081 50.000 0.00 0.00 0.00 3.13
902 970 4.381505 CCCTTCTCTTCTCTTCTCTTTCCG 60.382 50.000 0.00 0.00 0.00 4.30
903 971 4.381505 CCTTCTCTTCTCTTCTCTTTCCGG 60.382 50.000 0.00 0.00 0.00 5.14
904 972 2.494073 TCTCTTCTCTTCTCTTTCCGGC 59.506 50.000 0.00 0.00 0.00 6.13
905 973 1.550976 TCTTCTCTTCTCTTTCCGGCC 59.449 52.381 0.00 0.00 0.00 6.13
906 974 1.552792 CTTCTCTTCTCTTTCCGGCCT 59.447 52.381 0.00 0.00 0.00 5.19
907 975 1.187087 TCTCTTCTCTTTCCGGCCTC 58.813 55.000 0.00 0.00 0.00 4.70
908 976 0.176910 CTCTTCTCTTTCCGGCCTCC 59.823 60.000 0.00 0.00 0.00 4.30
909 977 1.222113 CTTCTCTTTCCGGCCTCCC 59.778 63.158 0.00 0.00 0.00 4.30
952 1020 2.679342 CCCCTCCCAAATCCGCTCA 61.679 63.158 0.00 0.00 0.00 4.26
1070 1139 1.381463 AGCCGTAAGTCCCTCCTCC 60.381 63.158 0.00 0.00 0.00 4.30
1071 1140 1.381463 GCCGTAAGTCCCTCCTCCT 60.381 63.158 0.00 0.00 0.00 3.69
1072 1141 1.393487 GCCGTAAGTCCCTCCTCCTC 61.393 65.000 0.00 0.00 0.00 3.71
1073 1142 0.756070 CCGTAAGTCCCTCCTCCTCC 60.756 65.000 0.00 0.00 0.00 4.30
1074 1143 0.756070 CGTAAGTCCCTCCTCCTCCC 60.756 65.000 0.00 0.00 0.00 4.30
1075 1144 0.637743 GTAAGTCCCTCCTCCTCCCT 59.362 60.000 0.00 0.00 0.00 4.20
1235 1504 3.198872 GGACTGATTCTGGAATTCGGAC 58.801 50.000 0.00 0.00 0.00 4.79
1362 1631 0.884514 GCTTCTGTTCCTTCCCAAGC 59.115 55.000 0.00 0.00 0.00 4.01
1364 1633 2.431454 CTTCTGTTCCTTCCCAAGCTC 58.569 52.381 0.00 0.00 0.00 4.09
1377 1646 1.272490 CCAAGCTCGGACTCTTGTGTA 59.728 52.381 11.81 0.00 38.33 2.90
1380 1649 2.729194 AGCTCGGACTCTTGTGTATCT 58.271 47.619 0.00 0.00 0.00 1.98
1406 1675 2.588034 GGACGCCGATAAGTGCCC 60.588 66.667 0.00 0.00 0.00 5.36
1473 1744 0.773644 AAGAGGAACAGCCCACACAT 59.226 50.000 0.00 0.00 37.37 3.21
1514 1788 4.666512 AGTAATGCCCACACATCTCTTTT 58.333 39.130 0.00 0.00 0.00 2.27
1631 1908 4.640855 CCGCGTGACAGTCACCGT 62.641 66.667 28.05 0.00 44.20 4.83
1652 1930 3.751246 CCCGCAGTTGCCATGGTG 61.751 66.667 14.67 4.51 37.91 4.17
1671 1951 0.037326 GCAGACCCTCGTCATGTTCA 60.037 55.000 0.00 0.00 41.87 3.18
1782 2062 3.295093 TGTCAAAAGTTCCAGATGCCAA 58.705 40.909 0.00 0.00 0.00 4.52
2216 2506 1.598130 GCGTGAGTGGAAAGTGGCT 60.598 57.895 0.00 0.00 0.00 4.75
2257 2547 4.918360 ACACACCAGCCCCTCCCA 62.918 66.667 0.00 0.00 0.00 4.37
2312 2602 2.195683 CCACACACCAGCCCAGTT 59.804 61.111 0.00 0.00 0.00 3.16
2489 2840 1.519408 CAAACACACCCTTAGGACCG 58.481 55.000 0.00 0.00 36.73 4.79
2506 2857 0.033991 CCGAGGAGAGTTCAGAGGGA 60.034 60.000 0.00 0.00 0.00 4.20
2514 2865 4.257731 GAGAGTTCAGAGGGACATTTTCC 58.742 47.826 0.00 0.00 45.00 3.13
2527 2878 6.211384 AGGGACATTTTCCTCTGTTTATTTGG 59.789 38.462 0.00 0.00 45.09 3.28
2528 2879 6.014584 GGGACATTTTCCTCTGTTTATTTGGT 60.015 38.462 0.00 0.00 45.09 3.67
2529 2880 7.177744 GGGACATTTTCCTCTGTTTATTTGGTA 59.822 37.037 0.00 0.00 45.09 3.25
2530 2881 8.027189 GGACATTTTCCTCTGTTTATTTGGTAC 58.973 37.037 0.00 0.00 41.95 3.34
2531 2882 8.706322 ACATTTTCCTCTGTTTATTTGGTACT 57.294 30.769 0.00 0.00 0.00 2.73
2532 2883 9.802039 ACATTTTCCTCTGTTTATTTGGTACTA 57.198 29.630 0.00 0.00 0.00 1.82
2534 2885 8.625786 TTTTCCTCTGTTTATTTGGTACTACC 57.374 34.615 0.00 0.00 39.22 3.18
2535 2886 7.563724 TTCCTCTGTTTATTTGGTACTACCT 57.436 36.000 6.79 0.00 39.58 3.08
2536 2887 7.179076 TCCTCTGTTTATTTGGTACTACCTC 57.821 40.000 6.79 0.00 39.58 3.85
2537 2888 6.958192 TCCTCTGTTTATTTGGTACTACCTCT 59.042 38.462 6.79 0.00 39.58 3.69
2538 2889 7.042335 CCTCTGTTTATTTGGTACTACCTCTG 58.958 42.308 6.79 0.00 39.58 3.35
2539 2890 7.310485 CCTCTGTTTATTTGGTACTACCTCTGT 60.310 40.741 6.79 0.00 39.58 3.41
2540 2891 7.609056 TCTGTTTATTTGGTACTACCTCTGTC 58.391 38.462 6.79 0.00 39.58 3.51
2541 2892 6.704310 TGTTTATTTGGTACTACCTCTGTCC 58.296 40.000 6.79 0.00 39.58 4.02
2542 2893 5.945144 TTATTTGGTACTACCTCTGTCCC 57.055 43.478 6.79 0.00 39.58 4.46
2543 2894 3.263369 TTTGGTACTACCTCTGTCCCA 57.737 47.619 6.79 0.00 39.58 4.37
2544 2895 3.484953 TTGGTACTACCTCTGTCCCAT 57.515 47.619 6.79 0.00 39.58 4.00
2545 2896 4.613265 TTGGTACTACCTCTGTCCCATA 57.387 45.455 6.79 0.00 39.58 2.74
2546 2897 4.613265 TGGTACTACCTCTGTCCCATAA 57.387 45.455 6.79 0.00 39.58 1.90
2547 2898 5.152306 TGGTACTACCTCTGTCCCATAAT 57.848 43.478 6.79 0.00 39.58 1.28
2548 2899 6.283948 TGGTACTACCTCTGTCCCATAATA 57.716 41.667 6.79 0.00 39.58 0.98
2549 2900 6.871035 TGGTACTACCTCTGTCCCATAATAT 58.129 40.000 6.79 0.00 39.58 1.28
2550 2901 8.003564 TGGTACTACCTCTGTCCCATAATATA 57.996 38.462 6.79 0.00 39.58 0.86
2551 2902 8.458575 TGGTACTACCTCTGTCCCATAATATAA 58.541 37.037 6.79 0.00 39.58 0.98
2552 2903 8.968969 GGTACTACCTCTGTCCCATAATATAAG 58.031 40.741 0.00 0.00 34.73 1.73
2553 2904 9.750783 GTACTACCTCTGTCCCATAATATAAGA 57.249 37.037 0.00 0.00 0.00 2.10
2554 2905 8.887264 ACTACCTCTGTCCCATAATATAAGAG 57.113 38.462 0.00 0.00 0.00 2.85
2555 2906 6.613153 ACCTCTGTCCCATAATATAAGAGC 57.387 41.667 0.00 0.00 0.00 4.09
2556 2907 5.186021 ACCTCTGTCCCATAATATAAGAGCG 59.814 44.000 0.00 0.00 0.00 5.03
2557 2908 5.186021 CCTCTGTCCCATAATATAAGAGCGT 59.814 44.000 0.00 0.00 0.00 5.07
2558 2909 6.295349 CCTCTGTCCCATAATATAAGAGCGTT 60.295 42.308 0.00 0.00 0.00 4.84
2559 2910 7.062749 TCTGTCCCATAATATAAGAGCGTTT 57.937 36.000 0.00 0.00 0.00 3.60
2560 2911 7.506114 TCTGTCCCATAATATAAGAGCGTTTT 58.494 34.615 0.00 0.00 0.00 2.43
2561 2912 7.990886 TCTGTCCCATAATATAAGAGCGTTTTT 59.009 33.333 0.00 0.00 0.00 1.94
2588 2939 4.743644 ACTAGTGTAGTGTCAAAAACGCTC 59.256 41.667 0.00 0.00 45.69 5.03
2589 2940 3.793559 AGTGTAGTGTCAAAAACGCTCT 58.206 40.909 0.00 0.00 45.69 4.09
2590 2941 4.189231 AGTGTAGTGTCAAAAACGCTCTT 58.811 39.130 0.00 0.00 45.69 2.85
2591 2942 5.353938 AGTGTAGTGTCAAAAACGCTCTTA 58.646 37.500 0.00 0.00 45.69 2.10
2592 2943 5.989777 AGTGTAGTGTCAAAAACGCTCTTAT 59.010 36.000 0.00 0.00 45.69 1.73
2593 2944 7.149973 AGTGTAGTGTCAAAAACGCTCTTATA 58.850 34.615 0.00 0.00 45.69 0.98
2594 2945 7.817962 AGTGTAGTGTCAAAAACGCTCTTATAT 59.182 33.333 0.00 0.00 45.69 0.86
2595 2946 8.440833 GTGTAGTGTCAAAAACGCTCTTATATT 58.559 33.333 0.00 0.00 45.69 1.28
2596 2947 9.642327 TGTAGTGTCAAAAACGCTCTTATATTA 57.358 29.630 0.00 0.00 45.69 0.98
2599 2950 8.612619 AGTGTCAAAAACGCTCTTATATTATGG 58.387 33.333 0.00 0.00 45.69 2.74
2600 2951 7.855904 GTGTCAAAAACGCTCTTATATTATGGG 59.144 37.037 0.00 0.00 35.42 4.00
2601 2952 7.771361 TGTCAAAAACGCTCTTATATTATGGGA 59.229 33.333 0.00 0.00 0.00 4.37
2602 2953 8.068380 GTCAAAAACGCTCTTATATTATGGGAC 58.932 37.037 0.00 0.00 0.00 4.46
2603 2954 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
2604 2955 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
2605 2956 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
2606 2957 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
2607 2958 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
2608 2959 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
2609 2960 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
2610 2961 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
2611 2962 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
2612 2963 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
2617 2968 0.817229 GGGACGGAGGGAGTAGTACG 60.817 65.000 0.00 0.00 0.00 3.67
2646 3757 9.388506 CCTGGGATGTTTATTATAGCTATCTTG 57.611 37.037 10.16 0.00 0.00 3.02
2650 3767 9.384764 GGATGTTTATTATAGCTATCTTGACCC 57.615 37.037 10.16 0.00 0.00 4.46
2656 3773 6.763715 TTATAGCTATCTTGACCCATGGTT 57.236 37.500 10.16 0.00 35.25 3.67
2736 3854 9.339850 CCAGATGAGTTCTATTTCAAGATGATT 57.660 33.333 0.00 0.00 31.77 2.57
2779 3897 1.208535 TCCATAGGCCCAAGTACGTTG 59.791 52.381 0.00 0.00 35.71 4.10
2790 3909 5.159209 CCCAAGTACGTTGTAGAGTAGTTG 58.841 45.833 13.29 13.29 46.12 3.16
3022 4141 8.691661 TTTTTGTGGCTAGATCCTATATTTCC 57.308 34.615 0.00 0.00 0.00 3.13
3353 4475 7.141758 TCCCTTCTCGTATAAAGAGGTAGTA 57.858 40.000 6.63 0.00 36.45 1.82
3355 4477 8.884323 TCCCTTCTCGTATAAAGAGGTAGTATA 58.116 37.037 6.63 0.00 36.45 1.47
3396 4519 5.960113 TGATTTTGTGTTGTATATGTGGCC 58.040 37.500 0.00 0.00 0.00 5.36
3419 4546 6.912591 GCCACTGTGATTAATGTTATACTTGC 59.087 38.462 9.86 0.00 0.00 4.01
3471 4599 6.250344 AGTGAATGAATGTCACATCTGTTG 57.750 37.500 7.26 0.00 46.44 3.33
3478 4606 5.821995 TGAATGTCACATCTGTTGTCTTTGA 59.178 36.000 0.00 0.00 36.00 2.69
3490 4620 6.984474 TCTGTTGTCTTTGATCTTTACTCGTT 59.016 34.615 0.00 0.00 0.00 3.85
3547 4677 7.238710 AGAGTTAGGGTGTTTTGGTGATTTAT 58.761 34.615 0.00 0.00 0.00 1.40
3634 4764 0.033208 GCTTGGATGTGGGATGGGAA 60.033 55.000 0.00 0.00 0.00 3.97
3677 4807 6.710597 AGCATTATCTTGATTCTTGTGCAT 57.289 33.333 0.00 0.00 32.82 3.96
3744 4874 9.912634 CAAATTCTTTATAGGAAAACAGCTTCA 57.087 29.630 0.00 0.00 0.00 3.02
3835 4965 3.163630 TGCAAAAAGAACTGAAGGTGC 57.836 42.857 0.00 0.00 0.00 5.01
3837 4967 2.119457 CAAAAAGAACTGAAGGTGCGC 58.881 47.619 0.00 0.00 0.00 6.09
3843 4973 2.037251 AGAACTGAAGGTGCGCTTTCTA 59.963 45.455 20.95 8.43 32.65 2.10
3928 5246 2.752354 CAGGTTTTGCCATCAACCGATA 59.248 45.455 1.68 0.00 46.25 2.92
3994 5312 5.058149 TGAAATTTTGATGGTCATGTCGG 57.942 39.130 0.00 0.00 0.00 4.79
4027 5345 8.448615 AGTAGTACTGTTTTTGTTGTCAAGTTC 58.551 33.333 5.39 0.00 34.88 3.01
4229 5548 2.063266 TGTCAATTTACTCACCGTCGC 58.937 47.619 0.00 0.00 0.00 5.19
4262 5581 4.380531 TCAGATGATAGGAATGGCGAAAC 58.619 43.478 0.00 0.00 0.00 2.78
4304 5623 0.312102 GCTGGCGCTTGAAGAGTTTT 59.688 50.000 7.64 0.00 0.00 2.43
4354 5675 3.023832 CCACAACCCCATCCATTACTTC 58.976 50.000 0.00 0.00 0.00 3.01
4426 5747 5.533482 GGAGACCATGTACTGCTATTAGTG 58.467 45.833 0.00 0.00 32.19 2.74
4515 5845 9.669353 GATATAGTTGAAATTATGCCTGTGTTG 57.331 33.333 0.00 0.00 0.00 3.33
4516 5846 5.789643 AGTTGAAATTATGCCTGTGTTGT 57.210 34.783 0.00 0.00 0.00 3.32
4517 5847 5.531634 AGTTGAAATTATGCCTGTGTTGTG 58.468 37.500 0.00 0.00 0.00 3.33
4518 5848 5.068987 AGTTGAAATTATGCCTGTGTTGTGT 59.931 36.000 0.00 0.00 0.00 3.72
4525 5855 3.207265 TGCCTGTGTTGTGTATCAAGT 57.793 42.857 0.00 0.00 36.66 3.16
4553 5883 5.759059 TGTGATAGAATTTCATTCCTGGCT 58.241 37.500 0.00 0.00 40.13 4.75
4555 5885 5.824624 GTGATAGAATTTCATTCCTGGCTGA 59.175 40.000 0.00 0.00 40.13 4.26
4558 5888 3.958798 AGAATTTCATTCCTGGCTGATGG 59.041 43.478 0.00 0.00 40.13 3.51
4583 5913 5.551760 AACTTGCATTCCACGATTAGAAG 57.448 39.130 0.00 0.00 0.00 2.85
4585 5915 3.627395 TGCATTCCACGATTAGAAGGT 57.373 42.857 0.00 0.00 0.00 3.50
4598 5928 5.237344 CGATTAGAAGGTAGAGCCAAATTGG 59.763 44.000 7.84 7.84 41.55 3.16
4608 5938 3.512978 CCAAATTGGCGGAGTTTGG 57.487 52.632 0.00 6.89 43.95 3.28
4616 5946 3.423154 CGGAGTTTGGCGGTGCTC 61.423 66.667 0.00 0.00 0.00 4.26
4618 5948 2.665185 GAGTTTGGCGGTGCTCGT 60.665 61.111 2.43 0.00 41.72 4.18
4622 5952 4.680237 TTGGCGGTGCTCGTGAGG 62.680 66.667 0.00 0.00 41.72 3.86
4641 5971 3.019003 GCTAGGAAGAGCCGGTGCA 62.019 63.158 1.90 0.00 43.43 4.57
4649 5979 0.978146 AGAGCCGGTGCACTAGGATT 60.978 55.000 27.75 17.77 36.60 3.01
4651 5981 2.472909 GCCGGTGCACTAGGATTGC 61.473 63.158 27.75 13.45 40.63 3.56
4663 5993 6.127647 TGCACTAGGATTGCAAATTTAAGAGG 60.128 38.462 1.71 0.00 46.90 3.69
4692 6022 3.130633 GCAAACACCAAATTCTTCCACC 58.869 45.455 0.00 0.00 0.00 4.61
4694 6024 1.616159 ACACCAAATTCTTCCACCGG 58.384 50.000 0.00 0.00 0.00 5.28
4695 6025 1.133606 ACACCAAATTCTTCCACCGGT 60.134 47.619 0.00 0.00 0.00 5.28
4707 6037 2.038269 CACCGGTGCATTAACGCCT 61.038 57.895 24.02 0.00 38.11 5.52
4708 6038 2.038269 ACCGGTGCATTAACGCCTG 61.038 57.895 6.12 0.00 38.11 4.85
4709 6039 2.100216 CGGTGCATTAACGCCTGC 59.900 61.111 0.00 0.00 38.11 4.85
4715 6045 0.744414 GCATTAACGCCTGCAGGAGA 60.744 55.000 38.87 20.17 38.45 3.71
4741 6071 3.959293 ACCACATTCATCAGATCAAGCA 58.041 40.909 0.00 0.00 0.00 3.91
4759 6089 1.539827 GCACGAGCTTGGTTTGGTAAT 59.460 47.619 5.79 0.00 37.91 1.89
4760 6090 2.414161 GCACGAGCTTGGTTTGGTAATC 60.414 50.000 5.79 0.00 37.91 1.75
4769 6099 3.417101 TGGTTTGGTAATCGAGCACAAT 58.583 40.909 0.00 0.00 34.56 2.71
4787 6117 8.571461 AGCACAATGAAAAAGAGAAGATCATA 57.429 30.769 0.00 0.00 30.90 2.15
4795 6125 8.102676 TGAAAAAGAGAAGATCATACATGACCA 58.897 33.333 0.00 0.00 40.03 4.02
4796 6126 7.856145 AAAAGAGAAGATCATACATGACCAC 57.144 36.000 0.00 0.00 40.03 4.16
4799 6129 7.192852 AGAGAAGATCATACATGACCACTTT 57.807 36.000 0.00 0.00 40.03 2.66
4801 6131 8.762645 AGAGAAGATCATACATGACCACTTTTA 58.237 33.333 0.00 0.00 40.03 1.52
4809 6139 4.985538 ACATGACCACTTTTATGAGGTGT 58.014 39.130 0.00 0.00 33.77 4.16
4811 6141 6.539173 ACATGACCACTTTTATGAGGTGTTA 58.461 36.000 0.00 0.00 33.77 2.41
4812 6142 6.655003 ACATGACCACTTTTATGAGGTGTTAG 59.345 38.462 0.00 0.00 33.77 2.34
4813 6143 5.556915 TGACCACTTTTATGAGGTGTTAGG 58.443 41.667 0.00 0.00 33.77 2.69
4814 6144 5.308497 TGACCACTTTTATGAGGTGTTAGGA 59.692 40.000 0.00 0.00 33.77 2.94
4815 6145 6.183361 TGACCACTTTTATGAGGTGTTAGGAA 60.183 38.462 0.00 0.00 33.77 3.36
4816 6146 6.238648 ACCACTTTTATGAGGTGTTAGGAAG 58.761 40.000 0.00 0.00 32.04 3.46
4817 6147 5.648092 CCACTTTTATGAGGTGTTAGGAAGG 59.352 44.000 0.00 0.00 0.00 3.46
4818 6148 5.648092 CACTTTTATGAGGTGTTAGGAAGGG 59.352 44.000 0.00 0.00 0.00 3.95
4819 6149 4.855298 TTTATGAGGTGTTAGGAAGGGG 57.145 45.455 0.00 0.00 0.00 4.79
4820 6150 1.596496 ATGAGGTGTTAGGAAGGGGG 58.404 55.000 0.00 0.00 0.00 5.40
4840 6170 0.549413 GGAGGTGTTAGGAAGGGGGT 60.549 60.000 0.00 0.00 0.00 4.95
4865 6195 3.254166 ACGAGCAACGAGGACTTTAACTA 59.746 43.478 10.05 0.00 45.77 2.24
4869 6199 4.282703 AGCAACGAGGACTTTAACTAGGAA 59.717 41.667 0.00 0.00 0.00 3.36
4872 6202 5.900865 ACGAGGACTTTAACTAGGAAGAG 57.099 43.478 9.03 0.00 0.00 2.85
4874 6204 4.440387 CGAGGACTTTAACTAGGAAGAGCC 60.440 50.000 9.03 9.17 0.00 4.70
4875 6205 4.426704 AGGACTTTAACTAGGAAGAGCCA 58.573 43.478 9.03 0.00 40.02 4.75
4891 6221 1.389609 GCCAGGCATTGAGTCCCATG 61.390 60.000 6.55 0.00 0.00 3.66
4892 6222 1.389609 CCAGGCATTGAGTCCCATGC 61.390 60.000 13.63 13.63 39.15 4.06
4894 6224 0.395311 AGGCATTGAGTCCCATGCTG 60.395 55.000 18.91 0.00 39.74 4.41
4909 6239 1.141019 GCTGTGCATGGCCTTGATG 59.859 57.895 22.21 9.96 0.00 3.07
4910 6240 1.141019 CTGTGCATGGCCTTGATGC 59.859 57.895 22.21 19.67 45.45 3.91
4912 6242 1.317431 TGTGCATGGCCTTGATGCTC 61.317 55.000 22.85 19.99 45.45 4.26
4913 6243 1.755395 TGCATGGCCTTGATGCTCC 60.755 57.895 22.85 6.44 45.45 4.70
4920 6250 1.544314 GGCCTTGATGCTCCTATCACC 60.544 57.143 0.00 0.00 36.84 4.02
4928 6258 1.102222 GCTCCTATCACCGAGGACGT 61.102 60.000 0.00 0.00 38.22 4.34
4930 6260 0.253894 TCCTATCACCGAGGACGTGA 59.746 55.000 0.00 0.00 38.22 4.35
4932 6262 1.681793 CCTATCACCGAGGACGTGATT 59.318 52.381 8.59 0.00 39.21 2.57
4975 6346 3.816480 GCCAGGTAATAAAGTGTTGGGGT 60.816 47.826 0.00 0.00 0.00 4.95
4990 6361 0.381801 GGGGTGTTATCAAGCATGCG 59.618 55.000 13.01 0.00 0.00 4.73
5005 6376 0.107456 ATGCGGTCATGAGGGTCATC 59.893 55.000 0.00 0.00 34.28 2.92
5016 6387 0.400213 AGGGTCATCCAACGCTTTGA 59.600 50.000 4.19 0.00 39.16 2.69
5017 6388 0.521735 GGGTCATCCAACGCTTTGAC 59.478 55.000 4.19 0.00 38.17 3.18
5020 6391 1.464997 GTCATCCAACGCTTTGACTCC 59.535 52.381 4.19 0.00 36.43 3.85
5024 6395 0.955919 CCAACGCTTTGACTCCCTCC 60.956 60.000 4.19 0.00 34.24 4.30
5031 6402 2.257207 CTTTGACTCCCTCCACACCTA 58.743 52.381 0.00 0.00 0.00 3.08
5032 6403 2.642171 TTGACTCCCTCCACACCTAT 57.358 50.000 0.00 0.00 0.00 2.57
5033 6404 3.769189 TTGACTCCCTCCACACCTATA 57.231 47.619 0.00 0.00 0.00 1.31
5038 6409 3.246387 ACTCCCTCCACACCTATAACCTT 60.246 47.826 0.00 0.00 0.00 3.50
5041 6412 3.521937 CCCTCCACACCTATAACCTTCAA 59.478 47.826 0.00 0.00 0.00 2.69
5047 6418 4.949856 CACACCTATAACCTTCAATGGCTT 59.050 41.667 0.00 0.00 0.00 4.35
5056 6427 2.083774 CTTCAATGGCTTAACTCCGCA 58.916 47.619 0.00 0.00 0.00 5.69
5062 6433 2.235016 TGGCTTAACTCCGCAAATGTT 58.765 42.857 0.00 0.00 0.00 2.71
5065 6436 3.234386 GCTTAACTCCGCAAATGTTGTC 58.766 45.455 0.00 0.00 0.00 3.18
5074 6445 1.615392 GCAAATGTTGTCCTCTTGCCT 59.385 47.619 0.00 0.00 37.10 4.75
5086 6457 3.397955 TCCTCTTGCCTAAAAAGGAAGGT 59.602 43.478 0.00 0.00 33.27 3.50
5134 6505 0.106708 TTAGCCTCATCCACGCCATC 59.893 55.000 0.00 0.00 0.00 3.51
5149 6520 1.331756 GCCATCGTCAAAATCATCGCT 59.668 47.619 0.00 0.00 0.00 4.93
5155 6526 3.863424 TCGTCAAAATCATCGCTAAGGTC 59.137 43.478 0.00 0.00 0.00 3.85
5156 6527 3.001330 CGTCAAAATCATCGCTAAGGTCC 59.999 47.826 0.00 0.00 0.00 4.46
5157 6528 4.192317 GTCAAAATCATCGCTAAGGTCCT 58.808 43.478 0.00 0.00 0.00 3.85
5158 6529 4.271291 GTCAAAATCATCGCTAAGGTCCTC 59.729 45.833 0.00 0.00 0.00 3.71
5159 6530 4.162320 TCAAAATCATCGCTAAGGTCCTCT 59.838 41.667 0.00 0.00 0.00 3.69
5160 6531 4.329462 AAATCATCGCTAAGGTCCTCTC 57.671 45.455 0.00 0.00 0.00 3.20
5161 6532 1.309950 TCATCGCTAAGGTCCTCTCG 58.690 55.000 0.00 0.00 0.00 4.04
5162 6533 0.318275 CATCGCTAAGGTCCTCTCGC 60.318 60.000 0.00 0.00 0.00 5.03
5163 6534 0.466555 ATCGCTAAGGTCCTCTCGCT 60.467 55.000 0.00 0.00 0.00 4.93
5164 6535 0.680280 TCGCTAAGGTCCTCTCGCTT 60.680 55.000 0.00 0.00 0.00 4.68
5165 6536 0.248702 CGCTAAGGTCCTCTCGCTTC 60.249 60.000 0.00 0.00 0.00 3.86
5166 6537 0.248702 GCTAAGGTCCTCTCGCTTCG 60.249 60.000 0.00 0.00 0.00 3.79
5167 6538 1.380524 CTAAGGTCCTCTCGCTTCGA 58.619 55.000 0.00 0.00 0.00 3.71
5168 6539 1.064357 CTAAGGTCCTCTCGCTTCGAC 59.936 57.143 0.00 0.00 0.00 4.20
5169 6540 0.609681 AAGGTCCTCTCGCTTCGACT 60.610 55.000 0.00 0.00 0.00 4.18
5170 6541 0.252479 AGGTCCTCTCGCTTCGACTA 59.748 55.000 0.00 0.00 0.00 2.59
5171 6542 0.658897 GGTCCTCTCGCTTCGACTAG 59.341 60.000 0.00 0.00 0.00 2.57
5172 6543 1.371595 GTCCTCTCGCTTCGACTAGT 58.628 55.000 0.00 0.00 0.00 2.57
5173 6544 1.328374 GTCCTCTCGCTTCGACTAGTC 59.672 57.143 13.18 13.18 0.00 2.59
5174 6545 0.658897 CCTCTCGCTTCGACTAGTCC 59.341 60.000 17.23 2.14 0.00 3.85
5175 6546 0.658897 CTCTCGCTTCGACTAGTCCC 59.341 60.000 17.23 2.79 0.00 4.46
5176 6547 0.747283 TCTCGCTTCGACTAGTCCCC 60.747 60.000 17.23 2.45 0.00 4.81
5177 6548 1.726533 CTCGCTTCGACTAGTCCCCC 61.727 65.000 17.23 2.78 0.00 5.40
5178 6549 2.050350 CGCTTCGACTAGTCCCCCA 61.050 63.158 17.23 0.00 0.00 4.96
5179 6550 1.516423 GCTTCGACTAGTCCCCCAC 59.484 63.158 17.23 0.00 0.00 4.61
5180 6551 1.255667 GCTTCGACTAGTCCCCCACA 61.256 60.000 17.23 0.00 0.00 4.17
5181 6552 1.486211 CTTCGACTAGTCCCCCACAT 58.514 55.000 17.23 0.00 0.00 3.21
5182 6553 1.137086 CTTCGACTAGTCCCCCACATG 59.863 57.143 17.23 0.71 0.00 3.21
5183 6554 0.686441 TCGACTAGTCCCCCACATGG 60.686 60.000 17.23 0.00 0.00 3.66
5184 6555 0.686441 CGACTAGTCCCCCACATGGA 60.686 60.000 17.23 0.00 37.39 3.41
5188 6559 4.796495 GTCCCCCACATGGACGGC 62.796 72.222 0.00 0.00 42.63 5.68
5191 6562 3.087253 CCCCACATGGACGGCCTA 61.087 66.667 9.82 0.00 37.39 3.93
5192 6563 2.505982 CCCACATGGACGGCCTAG 59.494 66.667 9.82 2.74 37.39 3.02
5193 6564 2.367202 CCCACATGGACGGCCTAGT 61.367 63.158 9.82 3.56 37.39 2.57
5194 6565 1.144057 CCACATGGACGGCCTAGTC 59.856 63.158 9.82 0.88 40.25 2.59
5195 6566 1.330655 CCACATGGACGGCCTAGTCT 61.331 60.000 9.82 0.00 40.76 3.24
5196 6567 0.103208 CACATGGACGGCCTAGTCTC 59.897 60.000 9.82 2.52 40.76 3.36
5197 6568 1.043673 ACATGGACGGCCTAGTCTCC 61.044 60.000 9.82 0.00 40.76 3.71
5203 6574 2.829458 GGCCTAGTCTCCGACGCT 60.829 66.667 0.00 0.00 37.67 5.07
5204 6575 2.716864 GCCTAGTCTCCGACGCTC 59.283 66.667 0.00 0.00 37.67 5.03
5205 6576 2.113433 GCCTAGTCTCCGACGCTCA 61.113 63.158 0.00 0.00 37.67 4.26
5206 6577 1.654954 GCCTAGTCTCCGACGCTCAA 61.655 60.000 0.00 0.00 37.67 3.02
5207 6578 0.809385 CCTAGTCTCCGACGCTCAAA 59.191 55.000 0.00 0.00 37.67 2.69
5208 6579 1.202200 CCTAGTCTCCGACGCTCAAAG 60.202 57.143 0.00 0.00 37.67 2.77
5209 6580 1.469308 CTAGTCTCCGACGCTCAAAGT 59.531 52.381 0.00 0.00 37.67 2.66
5210 6581 0.039074 AGTCTCCGACGCTCAAAGTG 60.039 55.000 0.00 0.00 37.67 3.16
5211 6582 1.372997 TCTCCGACGCTCAAAGTGC 60.373 57.895 0.00 0.00 0.00 4.40
5212 6583 1.664649 CTCCGACGCTCAAAGTGCA 60.665 57.895 0.00 0.00 0.00 4.57
5213 6584 1.005037 TCCGACGCTCAAAGTGCAT 60.005 52.632 0.00 0.00 0.00 3.96
5214 6585 0.602638 TCCGACGCTCAAAGTGCATT 60.603 50.000 0.00 0.00 0.00 3.56
5215 6586 0.179215 CCGACGCTCAAAGTGCATTC 60.179 55.000 0.00 0.00 0.00 2.67
5216 6587 0.512518 CGACGCTCAAAGTGCATTCA 59.487 50.000 0.00 0.00 0.00 2.57
5217 6588 1.129251 CGACGCTCAAAGTGCATTCAT 59.871 47.619 0.00 0.00 0.00 2.57
5218 6589 2.413239 CGACGCTCAAAGTGCATTCATT 60.413 45.455 0.00 0.00 0.00 2.57
5219 6590 3.181521 CGACGCTCAAAGTGCATTCATTA 60.182 43.478 0.00 0.00 0.00 1.90
5220 6591 4.668941 CGACGCTCAAAGTGCATTCATTAA 60.669 41.667 0.00 0.00 0.00 1.40
5221 6592 4.726416 ACGCTCAAAGTGCATTCATTAAG 58.274 39.130 0.00 0.00 0.00 1.85
5222 6593 4.455533 ACGCTCAAAGTGCATTCATTAAGA 59.544 37.500 0.00 0.00 0.00 2.10
5223 6594 5.026462 CGCTCAAAGTGCATTCATTAAGAG 58.974 41.667 0.00 0.00 0.00 2.85
5224 6595 5.338365 GCTCAAAGTGCATTCATTAAGAGG 58.662 41.667 0.00 0.00 0.00 3.69
5225 6596 5.314923 TCAAAGTGCATTCATTAAGAGGC 57.685 39.130 0.00 0.00 0.00 4.70
5226 6597 4.100529 CAAAGTGCATTCATTAAGAGGCG 58.899 43.478 0.00 0.00 32.80 5.52
5227 6598 2.991250 AGTGCATTCATTAAGAGGCGT 58.009 42.857 0.00 0.00 32.80 5.68
5228 6599 4.137116 AGTGCATTCATTAAGAGGCGTA 57.863 40.909 0.00 0.00 32.80 4.42
5229 6600 4.122776 AGTGCATTCATTAAGAGGCGTAG 58.877 43.478 0.00 0.00 32.80 3.51
5245 6616 3.933155 CGTAGCATCCATGACAACTTC 57.067 47.619 0.00 0.00 0.00 3.01
5246 6617 3.261580 CGTAGCATCCATGACAACTTCA 58.738 45.455 0.00 0.00 39.11 3.02
5247 6618 3.873361 CGTAGCATCCATGACAACTTCAT 59.127 43.478 0.00 0.00 46.75 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 1.406539 AGCAGCAAACAAGTTCCACAG 59.593 47.619 0.00 0.00 0.00 3.66
125 126 1.152902 GCATATGCACCCCAGAGCA 60.153 57.895 22.84 0.00 43.97 4.26
236 254 2.033299 CGAAGCACTGTCACCATGTTTT 59.967 45.455 0.00 0.00 0.00 2.43
241 259 0.392706 TGACGAAGCACTGTCACCAT 59.607 50.000 0.00 0.00 40.02 3.55
248 266 3.673746 TTTTTCACTGACGAAGCACTG 57.326 42.857 0.00 0.00 0.00 3.66
307 345 4.035675 GGGAGGAAAGTATTTTGATCTGCG 59.964 45.833 0.00 0.00 39.27 5.18
401 450 2.220313 CCTGCCCACCAAAAATGTTTG 58.780 47.619 0.93 0.93 43.26 2.93
422 471 1.528129 GGCTCTTGGTAGCATATGCC 58.472 55.000 23.96 9.68 44.64 4.40
423 472 1.151668 CGGCTCTTGGTAGCATATGC 58.848 55.000 20.36 20.36 44.64 3.14
432 481 0.625849 AATCCAATCCGGCTCTTGGT 59.374 50.000 22.03 11.93 42.13 3.67
523 572 3.435186 GCCCAGAAGAACCAGCGC 61.435 66.667 0.00 0.00 0.00 5.92
528 577 2.496899 TCATCTTGCCCAGAAGAACC 57.503 50.000 0.00 0.00 35.60 3.62
628 682 8.945057 GCATCAGCAATTTAAAATCCCTAAAAA 58.055 29.630 0.00 0.00 41.58 1.94
629 683 7.552330 GGCATCAGCAATTTAAAATCCCTAAAA 59.448 33.333 0.00 0.00 44.61 1.52
630 684 7.047271 GGCATCAGCAATTTAAAATCCCTAAA 58.953 34.615 0.00 0.00 44.61 1.85
631 685 6.155910 TGGCATCAGCAATTTAAAATCCCTAA 59.844 34.615 0.00 0.00 44.61 2.69
632 686 5.660417 TGGCATCAGCAATTTAAAATCCCTA 59.340 36.000 0.00 0.00 44.61 3.53
633 687 4.470664 TGGCATCAGCAATTTAAAATCCCT 59.529 37.500 0.00 0.00 44.61 4.20
634 688 4.768583 TGGCATCAGCAATTTAAAATCCC 58.231 39.130 0.00 0.00 44.61 3.85
635 689 5.277634 GCATGGCATCAGCAATTTAAAATCC 60.278 40.000 0.00 0.00 44.61 3.01
636 690 5.526111 AGCATGGCATCAGCAATTTAAAATC 59.474 36.000 11.77 0.00 44.61 2.17
637 691 5.433526 AGCATGGCATCAGCAATTTAAAAT 58.566 33.333 11.77 0.00 44.61 1.82
642 696 2.737359 CGAAGCATGGCATCAGCAATTT 60.737 45.455 11.77 0.00 44.61 1.82
645 699 1.804598 CGAAGCATGGCATCAGCAA 59.195 52.632 11.77 0.00 44.61 3.91
711 765 4.058124 GGGAGGCTGAACAATTGTTTTTC 58.942 43.478 24.02 12.88 38.56 2.29
751 805 7.476540 TCGTATTGGGCTGTAGTGATATTAT 57.523 36.000 0.00 0.00 0.00 1.28
752 806 6.904463 TCGTATTGGGCTGTAGTGATATTA 57.096 37.500 0.00 0.00 0.00 0.98
753 807 5.801531 TCGTATTGGGCTGTAGTGATATT 57.198 39.130 0.00 0.00 0.00 1.28
890 958 1.265454 GGGAGGCCGGAAAGAGAAGA 61.265 60.000 5.05 0.00 0.00 2.87
891 959 1.222113 GGGAGGCCGGAAAGAGAAG 59.778 63.158 5.05 0.00 0.00 2.85
892 960 2.298661 GGGGAGGCCGGAAAGAGAA 61.299 63.158 5.05 0.00 0.00 2.87
893 961 2.687566 GGGGAGGCCGGAAAGAGA 60.688 66.667 5.05 0.00 0.00 3.10
897 965 2.687566 GAGAGGGGAGGCCGGAAA 60.688 66.667 5.05 0.00 0.00 3.13
898 966 4.798682 GGAGAGGGGAGGCCGGAA 62.799 72.222 5.05 0.00 0.00 4.30
901 969 4.806339 AAGGGAGAGGGGAGGCCG 62.806 72.222 0.00 0.00 0.00 6.13
902 970 2.770475 GAAGGGAGAGGGGAGGCC 60.770 72.222 0.00 0.00 0.00 5.19
903 971 1.764454 GAGAAGGGAGAGGGGAGGC 60.764 68.421 0.00 0.00 0.00 4.70
904 972 1.074850 GGAGAAGGGAGAGGGGAGG 60.075 68.421 0.00 0.00 0.00 4.30
905 973 0.105709 GAGGAGAAGGGAGAGGGGAG 60.106 65.000 0.00 0.00 0.00 4.30
906 974 1.939082 CGAGGAGAAGGGAGAGGGGA 61.939 65.000 0.00 0.00 0.00 4.81
907 975 1.456705 CGAGGAGAAGGGAGAGGGG 60.457 68.421 0.00 0.00 0.00 4.79
908 976 2.131067 GCGAGGAGAAGGGAGAGGG 61.131 68.421 0.00 0.00 0.00 4.30
909 977 2.131067 GGCGAGGAGAAGGGAGAGG 61.131 68.421 0.00 0.00 0.00 3.69
917 985 4.189188 GCTACGCGGCGAGGAGAA 62.189 66.667 30.94 2.06 0.00 2.87
962 1030 3.701604 CTCCCGGAAGAACGAGCGG 62.702 68.421 0.73 0.00 35.47 5.52
1173 1252 2.671963 GAAGGTCCAACACGGGGC 60.672 66.667 0.00 0.00 34.36 5.80
1175 1254 1.003718 GAGGAAGGTCCAACACGGG 60.004 63.158 0.00 0.00 39.61 5.28
1205 1284 3.194755 TCCAGAATCAGTCCGAAAATCGA 59.805 43.478 0.58 0.00 43.74 3.59
1212 1291 2.159099 CCGAATTCCAGAATCAGTCCGA 60.159 50.000 0.00 0.00 0.00 4.55
1235 1504 1.669115 CGACTCCCTGCAACACCAG 60.669 63.158 0.00 0.00 0.00 4.00
1362 1631 5.317733 AGAAAGATACACAAGAGTCCGAG 57.682 43.478 0.00 0.00 0.00 4.63
1364 1633 6.787085 AAAAGAAAGATACACAAGAGTCCG 57.213 37.500 0.00 0.00 0.00 4.79
1377 1646 2.500229 TCGGCGTCCAAAAAGAAAGAT 58.500 42.857 6.85 0.00 0.00 2.40
1380 1649 3.816523 ACTTATCGGCGTCCAAAAAGAAA 59.183 39.130 6.85 0.00 0.00 2.52
1473 1744 1.944024 CTTGTTTTGCCCACACGTAGA 59.056 47.619 0.00 0.00 0.00 2.59
1546 1823 1.529865 GCGTTATCTATTTCGCCCACC 59.470 52.381 0.00 0.00 42.33 4.61
1582 1859 0.683504 AACGAGGTACGAGGCCTGAT 60.684 55.000 12.00 0.00 45.77 2.90
1652 1930 0.037326 TGAACATGACGAGGGTCTGC 60.037 55.000 0.00 0.00 43.79 4.26
1671 1951 3.366273 CGACATGGCAACTGCAGTTAAAT 60.366 43.478 30.67 20.35 44.36 1.40
1782 2062 0.887933 CAGCCGTAGTTGCCCAAAAT 59.112 50.000 0.00 0.00 0.00 1.82
2216 2506 1.153066 TTCAGCAGTTCGCCCACAA 60.153 52.632 0.00 0.00 44.04 3.33
2257 2547 2.112297 ACGGCCGTTTCACCACAT 59.888 55.556 28.70 0.00 0.00 3.21
2312 2602 3.845178 CATGTTTCTAGTGCCACGTAGA 58.155 45.455 0.00 0.00 0.00 2.59
2449 2741 3.440173 TGGGTTGAGCTCAATTCGATTTC 59.560 43.478 30.65 15.45 38.24 2.17
2489 2840 2.223803 TGTCCCTCTGAACTCTCCTC 57.776 55.000 0.00 0.00 0.00 3.71
2506 2857 8.706322 AGTACCAAATAAACAGAGGAAAATGT 57.294 30.769 0.00 0.00 0.00 2.71
2514 2865 7.612677 ACAGAGGTAGTACCAAATAAACAGAG 58.387 38.462 21.49 0.89 41.95 3.35
2565 2916 4.690122 AGCGTTTTTGACACTACACTAGT 58.310 39.130 0.00 0.00 40.28 2.57
2566 2917 4.982916 AGAGCGTTTTTGACACTACACTAG 59.017 41.667 0.00 0.00 0.00 2.57
2567 2918 4.940463 AGAGCGTTTTTGACACTACACTA 58.060 39.130 0.00 0.00 0.00 2.74
2568 2919 3.793559 AGAGCGTTTTTGACACTACACT 58.206 40.909 0.00 0.00 0.00 3.55
2569 2920 4.531659 AAGAGCGTTTTTGACACTACAC 57.468 40.909 0.00 0.00 0.00 2.90
2570 2921 8.542497 AATATAAGAGCGTTTTTGACACTACA 57.458 30.769 0.00 0.00 0.00 2.74
2573 2924 8.612619 CCATAATATAAGAGCGTTTTTGACACT 58.387 33.333 0.00 0.00 0.00 3.55
2574 2925 7.855904 CCCATAATATAAGAGCGTTTTTGACAC 59.144 37.037 0.00 0.00 0.00 3.67
2575 2926 7.771361 TCCCATAATATAAGAGCGTTTTTGACA 59.229 33.333 0.00 0.00 0.00 3.58
2576 2927 8.068380 GTCCCATAATATAAGAGCGTTTTTGAC 58.932 37.037 0.00 0.00 0.00 3.18
2577 2928 7.042321 CGTCCCATAATATAAGAGCGTTTTTGA 60.042 37.037 0.00 0.00 0.00 2.69
2578 2929 7.069569 CGTCCCATAATATAAGAGCGTTTTTG 58.930 38.462 0.00 0.00 0.00 2.44
2579 2930 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
2580 2931 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
2581 2932 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
2582 2933 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
2583 2934 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
2584 2935 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
2585 2936 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
2586 2937 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
2587 2938 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
2588 2939 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
2589 2940 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
2590 2941 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
2591 2942 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
2592 2943 3.400322 ACTACTCCCTCCGTCCCATAATA 59.600 47.826 0.00 0.00 0.00 0.98
2593 2944 2.179424 ACTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
2594 2945 1.572415 ACTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
2595 2946 1.229131 ACTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
2596 2947 1.133544 GTACTACTCCCTCCGTCCCAT 60.134 57.143 0.00 0.00 0.00 4.00
2597 2948 0.257039 GTACTACTCCCTCCGTCCCA 59.743 60.000 0.00 0.00 0.00 4.37
2598 2949 0.817229 CGTACTACTCCCTCCGTCCC 60.817 65.000 0.00 0.00 0.00 4.46
2599 2950 0.107459 ACGTACTACTCCCTCCGTCC 60.107 60.000 0.00 0.00 0.00 4.79
2600 2951 1.668237 GAACGTACTACTCCCTCCGTC 59.332 57.143 0.00 0.00 0.00 4.79
2601 2952 1.680249 GGAACGTACTACTCCCTCCGT 60.680 57.143 0.00 0.00 0.00 4.69
2602 2953 1.020437 GGAACGTACTACTCCCTCCG 58.980 60.000 0.00 0.00 0.00 4.63
2603 2954 2.022934 CAGGAACGTACTACTCCCTCC 58.977 57.143 0.00 0.00 0.00 4.30
2604 2955 2.022934 CCAGGAACGTACTACTCCCTC 58.977 57.143 0.00 0.00 0.00 4.30
2605 2956 1.341778 CCCAGGAACGTACTACTCCCT 60.342 57.143 0.00 0.00 0.00 4.20
2606 2957 1.109609 CCCAGGAACGTACTACTCCC 58.890 60.000 0.00 0.00 0.00 4.30
2607 2958 2.134789 TCCCAGGAACGTACTACTCC 57.865 55.000 0.00 0.00 0.00 3.85
2608 2959 3.022406 ACATCCCAGGAACGTACTACTC 58.978 50.000 0.00 0.00 0.00 2.59
2609 2960 3.097342 ACATCCCAGGAACGTACTACT 57.903 47.619 0.00 0.00 0.00 2.57
2610 2961 3.881937 AACATCCCAGGAACGTACTAC 57.118 47.619 0.00 0.00 0.00 2.73
2611 2962 6.549433 AATAAACATCCCAGGAACGTACTA 57.451 37.500 0.00 0.00 0.00 1.82
2612 2963 5.431179 AATAAACATCCCAGGAACGTACT 57.569 39.130 0.00 0.00 0.00 2.73
2617 2968 9.384764 GATAGCTATAATAAACATCCCAGGAAC 57.615 37.037 6.13 0.00 0.00 3.62
2646 3757 5.469479 CAATAACAACAAGAACCATGGGTC 58.531 41.667 23.07 23.07 33.12 4.46
2736 3854 4.620589 TCCATCCACGGTTTTACTGTTA 57.379 40.909 0.00 0.00 35.04 2.41
2790 3909 0.603975 AAGGTTCGAACTGCCAGAGC 60.604 55.000 26.32 8.38 40.48 4.09
3009 4128 8.391075 TCAAATTGGAACGGAAATATAGGATC 57.609 34.615 0.00 0.00 0.00 3.36
3022 4141 3.574614 GGGTGACATTCAAATTGGAACG 58.425 45.455 0.00 0.00 0.00 3.95
3355 4477 8.650490 ACAAAATCATATTCCCAAAAGAACAGT 58.350 29.630 0.00 0.00 0.00 3.55
3396 4519 7.905126 TCGCAAGTATAACATTAATCACAGTG 58.095 34.615 0.00 0.00 39.48 3.66
3419 4546 5.230942 ACCGATAATGAAAGCTATCCTTCG 58.769 41.667 0.00 0.00 31.99 3.79
3461 4589 8.092521 AGTAAAGATCAAAGACAACAGATGTG 57.907 34.615 0.00 0.00 44.12 3.21
3478 4606 7.783042 AGCAGGTATTTCTAACGAGTAAAGAT 58.217 34.615 0.00 0.00 0.00 2.40
3490 4620 9.770097 CTCAATAATGAAGAGCAGGTATTTCTA 57.230 33.333 0.00 0.00 34.49 2.10
3528 4658 6.739331 TGAAATAAATCACCAAAACACCCT 57.261 33.333 0.00 0.00 0.00 4.34
3744 4874 5.104735 CCTGCTTTCTAACTCCTTGTAGGAT 60.105 44.000 0.00 0.00 44.81 3.24
3835 4965 6.662414 TTTATGGTTCAGTCATAGAAAGCG 57.338 37.500 0.00 0.00 0.00 4.68
3928 5246 3.988976 TGACTTTAGGCTGCTTGAGAT 57.011 42.857 0.00 0.00 0.00 2.75
4196 5515 4.574599 AAATTGACAGGTCAGCAAGAAC 57.425 40.909 2.01 0.00 41.13 3.01
4229 5548 6.078202 TCCTATCATCTGAAGTTTAGCGAG 57.922 41.667 0.00 0.00 0.00 5.03
4262 5581 2.162681 GTCTGTTCCCAATTGTCCAGG 58.837 52.381 4.43 0.00 0.00 4.45
4304 5623 1.004277 GGGCAATGTCACAGGGAAGTA 59.996 52.381 0.00 0.00 0.00 2.24
4354 5675 6.263168 CAGGCAAAGGTTATAAAGGTATCTGG 59.737 42.308 0.00 0.00 0.00 3.86
4503 5830 4.905429 ACTTGATACACAACACAGGCATA 58.095 39.130 0.00 0.00 34.56 3.14
4545 5875 3.420893 CAAGTTAACCATCAGCCAGGAA 58.579 45.455 0.88 0.00 0.00 3.36
4553 5883 3.190327 CGTGGAATGCAAGTTAACCATCA 59.810 43.478 0.88 0.00 0.00 3.07
4555 5885 3.417101 TCGTGGAATGCAAGTTAACCAT 58.583 40.909 0.88 0.00 0.00 3.55
4558 5888 6.417191 TCTAATCGTGGAATGCAAGTTAAC 57.583 37.500 0.00 0.00 0.00 2.01
4600 5930 3.423154 CGAGCACCGCCAAACTCC 61.423 66.667 0.00 0.00 0.00 3.85
4616 5946 1.439644 GCTCTTCCTAGCCCTCACG 59.560 63.158 0.00 0.00 36.45 4.35
4628 5958 1.153549 CCTAGTGCACCGGCTCTTC 60.154 63.158 14.63 0.00 40.78 2.87
4641 5971 5.066505 CGCCTCTTAAATTTGCAATCCTAGT 59.933 40.000 0.00 0.00 0.00 2.57
4649 5979 2.509569 TCACCGCCTCTTAAATTTGCA 58.490 42.857 0.00 0.00 0.00 4.08
4651 5981 3.119531 TGCATCACCGCCTCTTAAATTTG 60.120 43.478 0.00 0.00 0.00 2.32
4656 5986 1.810151 GTTTGCATCACCGCCTCTTAA 59.190 47.619 0.00 0.00 0.00 1.85
4692 6022 2.100216 GCAGGCGTTAATGCACCG 59.900 61.111 20.80 9.48 42.11 4.94
4694 6024 1.137404 CCTGCAGGCGTTAATGCAC 59.863 57.895 22.33 10.43 46.97 4.57
4727 6057 1.931906 GCTCGTGCTTGATCTGATGA 58.068 50.000 1.41 0.00 36.03 2.92
4741 6071 2.073816 CGATTACCAAACCAAGCTCGT 58.926 47.619 0.00 0.00 0.00 4.18
4747 6077 2.852449 TGTGCTCGATTACCAAACCAA 58.148 42.857 0.00 0.00 0.00 3.67
4751 6081 5.697473 TTTCATTGTGCTCGATTACCAAA 57.303 34.783 0.00 0.00 0.00 3.28
4753 6083 5.471797 TCTTTTTCATTGTGCTCGATTACCA 59.528 36.000 0.00 0.00 0.00 3.25
4759 6089 5.056480 TCTTCTCTTTTTCATTGTGCTCGA 58.944 37.500 0.00 0.00 0.00 4.04
4760 6090 5.348418 TCTTCTCTTTTTCATTGTGCTCG 57.652 39.130 0.00 0.00 0.00 5.03
4769 6099 8.102676 TGGTCATGTATGATCTTCTCTTTTTCA 58.897 33.333 6.67 0.00 38.71 2.69
4787 6117 4.985538 ACACCTCATAAAAGTGGTCATGT 58.014 39.130 0.00 0.00 35.79 3.21
4793 6123 5.648092 CCTTCCTAACACCTCATAAAAGTGG 59.352 44.000 0.00 0.00 35.79 4.00
4795 6125 5.281037 CCCCTTCCTAACACCTCATAAAAGT 60.281 44.000 0.00 0.00 0.00 2.66
4796 6126 5.193679 CCCCTTCCTAACACCTCATAAAAG 58.806 45.833 0.00 0.00 0.00 2.27
4799 6129 3.120108 CCCCCTTCCTAACACCTCATAA 58.880 50.000 0.00 0.00 0.00 1.90
4801 6131 1.596496 CCCCCTTCCTAACACCTCAT 58.404 55.000 0.00 0.00 0.00 2.90
4818 6148 1.279749 CCCTTCCTAACACCTCCCCC 61.280 65.000 0.00 0.00 0.00 5.40
4819 6149 1.279749 CCCCTTCCTAACACCTCCCC 61.280 65.000 0.00 0.00 0.00 4.81
4820 6150 1.279749 CCCCCTTCCTAACACCTCCC 61.280 65.000 0.00 0.00 0.00 4.30
4821 6151 0.549413 ACCCCCTTCCTAACACCTCC 60.549 60.000 0.00 0.00 0.00 4.30
4822 6152 0.618981 CACCCCCTTCCTAACACCTC 59.381 60.000 0.00 0.00 0.00 3.85
4823 6153 1.498176 GCACCCCCTTCCTAACACCT 61.498 60.000 0.00 0.00 0.00 4.00
4824 6154 1.001269 GCACCCCCTTCCTAACACC 60.001 63.158 0.00 0.00 0.00 4.16
4825 6155 0.608308 GTGCACCCCCTTCCTAACAC 60.608 60.000 5.22 0.00 0.00 3.32
4826 6156 1.765074 GTGCACCCCCTTCCTAACA 59.235 57.895 5.22 0.00 0.00 2.41
4827 6157 1.376812 CGTGCACCCCCTTCCTAAC 60.377 63.158 12.15 0.00 0.00 2.34
4828 6158 1.536907 TCGTGCACCCCCTTCCTAA 60.537 57.895 12.15 0.00 0.00 2.69
4829 6159 1.987855 CTCGTGCACCCCCTTCCTA 60.988 63.158 12.15 0.00 0.00 2.94
4830 6160 3.322466 CTCGTGCACCCCCTTCCT 61.322 66.667 12.15 0.00 0.00 3.36
4850 6180 4.158209 GCTCTTCCTAGTTAAAGTCCTCGT 59.842 45.833 0.00 0.00 0.00 4.18
4851 6181 4.440387 GGCTCTTCCTAGTTAAAGTCCTCG 60.440 50.000 0.00 0.00 0.00 4.63
4852 6182 4.466726 TGGCTCTTCCTAGTTAAAGTCCTC 59.533 45.833 0.00 0.00 35.26 3.71
4865 6195 0.255318 CTCAATGCCTGGCTCTTCCT 59.745 55.000 21.03 0.00 35.26 3.36
4869 6199 1.606531 GGACTCAATGCCTGGCTCT 59.393 57.895 21.03 4.24 0.00 4.09
4872 6202 1.076485 ATGGGACTCAATGCCTGGC 60.076 57.895 12.87 12.87 40.26 4.85
4874 6204 0.395311 AGCATGGGACTCAATGCCTG 60.395 55.000 10.75 0.00 40.26 4.85
4875 6205 0.395311 CAGCATGGGACTCAATGCCT 60.395 55.000 10.75 0.00 40.26 4.75
4891 6221 1.141019 CATCAAGGCCATGCACAGC 59.859 57.895 5.01 1.09 0.00 4.40
4892 6222 1.141019 GCATCAAGGCCATGCACAG 59.859 57.895 18.96 3.59 45.19 3.66
4909 6239 1.102222 ACGTCCTCGGTGATAGGAGC 61.102 60.000 0.00 0.00 43.81 4.70
4910 6240 0.663688 CACGTCCTCGGTGATAGGAG 59.336 60.000 0.00 0.00 43.81 3.69
4912 6242 1.319541 ATCACGTCCTCGGTGATAGG 58.680 55.000 5.68 0.00 41.85 2.57
4913 6243 3.116300 CAAATCACGTCCTCGGTGATAG 58.884 50.000 7.74 1.50 41.85 2.08
4920 6250 1.359848 CTTCCCAAATCACGTCCTCG 58.640 55.000 0.00 0.00 43.34 4.63
4928 6258 2.042842 TCCTTGATGGCTTCCCAAATCA 59.957 45.455 0.00 0.00 46.14 2.57
4930 6260 2.312741 TCTCCTTGATGGCTTCCCAAAT 59.687 45.455 0.00 0.00 46.14 2.32
4932 6262 1.371467 TCTCCTTGATGGCTTCCCAA 58.629 50.000 0.00 0.00 46.14 4.12
4956 6286 4.734843 ACACCCCAACACTTTATTACCT 57.265 40.909 0.00 0.00 0.00 3.08
4957 6287 6.660094 TGATAACACCCCAACACTTTATTACC 59.340 38.462 0.00 0.00 0.00 2.85
4958 6288 7.690952 TGATAACACCCCAACACTTTATTAC 57.309 36.000 0.00 0.00 0.00 1.89
4960 6290 6.295067 GCTTGATAACACCCCAACACTTTATT 60.295 38.462 0.00 0.00 0.00 1.40
4975 6346 2.106477 TGACCGCATGCTTGATAACA 57.894 45.000 17.13 3.57 0.00 2.41
4990 6361 1.743772 CGTTGGATGACCCTCATGACC 60.744 57.143 0.00 0.00 37.20 4.02
5005 6376 0.955919 GGAGGGAGTCAAAGCGTTGG 60.956 60.000 12.54 0.00 35.29 3.77
5016 6387 2.318207 AGGTTATAGGTGTGGAGGGAGT 59.682 50.000 0.00 0.00 0.00 3.85
5017 6388 3.047695 AGGTTATAGGTGTGGAGGGAG 57.952 52.381 0.00 0.00 0.00 4.30
5020 6391 4.837093 TTGAAGGTTATAGGTGTGGAGG 57.163 45.455 0.00 0.00 0.00 4.30
5024 6395 4.526970 AGCCATTGAAGGTTATAGGTGTG 58.473 43.478 0.00 0.00 0.00 3.82
5031 6402 4.881850 CGGAGTTAAGCCATTGAAGGTTAT 59.118 41.667 0.00 0.00 0.00 1.89
5032 6403 4.258543 CGGAGTTAAGCCATTGAAGGTTA 58.741 43.478 0.00 0.00 0.00 2.85
5033 6404 3.081804 CGGAGTTAAGCCATTGAAGGTT 58.918 45.455 0.00 0.00 0.00 3.50
5038 6409 2.192664 TTGCGGAGTTAAGCCATTGA 57.807 45.000 0.00 0.00 0.00 2.57
5041 6412 2.446435 ACATTTGCGGAGTTAAGCCAT 58.554 42.857 0.00 0.00 0.00 4.40
5047 6418 3.071479 GAGGACAACATTTGCGGAGTTA 58.929 45.455 0.00 0.00 0.00 2.24
5056 6427 6.462909 CCTTTTTAGGCAAGAGGACAACATTT 60.463 38.462 0.00 0.00 0.00 2.32
5062 6433 4.398319 CTTCCTTTTTAGGCAAGAGGACA 58.602 43.478 0.00 0.00 36.31 4.02
5065 6436 3.507622 CACCTTCCTTTTTAGGCAAGAGG 59.492 47.826 0.00 0.00 34.79 3.69
5074 6445 2.510613 CCTTCCGCACCTTCCTTTTTA 58.489 47.619 0.00 0.00 0.00 1.52
5099 6470 3.562567 GCTAATAGGCCTGTAGTCGAG 57.437 52.381 17.99 3.93 0.00 4.04
5134 6505 3.001330 GGACCTTAGCGATGATTTTGACG 59.999 47.826 0.00 0.00 0.00 4.35
5136 6507 4.162320 AGAGGACCTTAGCGATGATTTTGA 59.838 41.667 0.00 0.00 0.00 2.69
5137 6508 4.446371 AGAGGACCTTAGCGATGATTTTG 58.554 43.478 0.00 0.00 0.00 2.44
5149 6520 1.093159 GTCGAAGCGAGAGGACCTTA 58.907 55.000 0.00 0.00 36.23 2.69
5155 6526 0.658897 GGACTAGTCGAAGCGAGAGG 59.341 60.000 16.56 0.00 36.23 3.69
5156 6527 0.658897 GGGACTAGTCGAAGCGAGAG 59.341 60.000 16.56 0.00 36.23 3.20
5157 6528 0.747283 GGGGACTAGTCGAAGCGAGA 60.747 60.000 16.56 0.00 36.23 4.04
5158 6529 1.726533 GGGGGACTAGTCGAAGCGAG 61.727 65.000 16.56 0.00 36.23 5.03
5159 6530 1.751927 GGGGGACTAGTCGAAGCGA 60.752 63.158 16.56 0.00 0.00 4.93
5160 6531 2.050350 TGGGGGACTAGTCGAAGCG 61.050 63.158 16.56 0.00 0.00 4.68
5161 6532 1.255667 TGTGGGGGACTAGTCGAAGC 61.256 60.000 16.56 2.66 0.00 3.86
5162 6533 1.137086 CATGTGGGGGACTAGTCGAAG 59.863 57.143 16.56 0.00 0.00 3.79
5163 6534 1.191535 CATGTGGGGGACTAGTCGAA 58.808 55.000 16.56 0.00 0.00 3.71
5164 6535 0.686441 CCATGTGGGGGACTAGTCGA 60.686 60.000 16.56 0.00 0.00 4.20
5165 6536 0.686441 TCCATGTGGGGGACTAGTCG 60.686 60.000 16.56 0.25 37.22 4.18
5166 6537 3.317280 TCCATGTGGGGGACTAGTC 57.683 57.895 14.87 14.87 37.22 2.59
5174 6545 3.087253 TAGGCCGTCCATGTGGGG 61.087 66.667 0.00 0.00 37.22 4.96
5175 6546 2.311688 GACTAGGCCGTCCATGTGGG 62.312 65.000 0.00 0.00 35.41 4.61
5176 6547 1.144057 GACTAGGCCGTCCATGTGG 59.856 63.158 0.00 0.00 33.74 4.17
5177 6548 0.103208 GAGACTAGGCCGTCCATGTG 59.897 60.000 7.12 0.00 34.46 3.21
5178 6549 1.043673 GGAGACTAGGCCGTCCATGT 61.044 60.000 7.12 0.00 34.46 3.21
5179 6550 1.742768 GGAGACTAGGCCGTCCATG 59.257 63.158 7.12 0.00 34.46 3.66
5180 6551 1.828660 CGGAGACTAGGCCGTCCAT 60.829 63.158 7.12 0.00 42.49 3.41
5181 6552 2.439701 CGGAGACTAGGCCGTCCA 60.440 66.667 7.12 0.00 42.49 4.02
5193 6564 1.372997 GCACTTTGAGCGTCGGAGA 60.373 57.895 0.00 0.00 0.00 3.71
5194 6565 1.016130 ATGCACTTTGAGCGTCGGAG 61.016 55.000 0.00 0.00 33.85 4.63
5195 6566 0.602638 AATGCACTTTGAGCGTCGGA 60.603 50.000 0.00 0.00 33.85 4.55
5196 6567 0.179215 GAATGCACTTTGAGCGTCGG 60.179 55.000 0.00 0.00 33.85 4.79
5197 6568 0.512518 TGAATGCACTTTGAGCGTCG 59.487 50.000 0.00 0.00 33.85 5.12
5198 6569 2.907910 ATGAATGCACTTTGAGCGTC 57.092 45.000 0.00 0.00 33.85 5.19
5199 6570 4.455533 TCTTAATGAATGCACTTTGAGCGT 59.544 37.500 0.00 0.00 33.85 5.07
5200 6571 4.973396 TCTTAATGAATGCACTTTGAGCG 58.027 39.130 0.00 0.00 33.85 5.03
5201 6572 5.338365 CCTCTTAATGAATGCACTTTGAGC 58.662 41.667 0.00 0.00 0.00 4.26
5202 6573 5.338365 GCCTCTTAATGAATGCACTTTGAG 58.662 41.667 0.00 0.00 0.00 3.02
5203 6574 4.142622 CGCCTCTTAATGAATGCACTTTGA 60.143 41.667 0.00 0.00 0.00 2.69
5204 6575 4.100529 CGCCTCTTAATGAATGCACTTTG 58.899 43.478 0.00 0.00 0.00 2.77
5205 6576 3.758554 ACGCCTCTTAATGAATGCACTTT 59.241 39.130 0.00 0.00 0.00 2.66
5206 6577 3.347216 ACGCCTCTTAATGAATGCACTT 58.653 40.909 0.00 0.00 0.00 3.16
5207 6578 2.991250 ACGCCTCTTAATGAATGCACT 58.009 42.857 0.00 0.00 0.00 4.40
5208 6579 3.303395 GCTACGCCTCTTAATGAATGCAC 60.303 47.826 0.00 0.00 0.00 4.57
5209 6580 2.872245 GCTACGCCTCTTAATGAATGCA 59.128 45.455 0.00 0.00 0.00 3.96
5210 6581 2.872245 TGCTACGCCTCTTAATGAATGC 59.128 45.455 0.00 0.00 0.00 3.56
5211 6582 4.153117 GGATGCTACGCCTCTTAATGAATG 59.847 45.833 0.00 0.00 0.00 2.67
5212 6583 4.202357 TGGATGCTACGCCTCTTAATGAAT 60.202 41.667 0.00 0.00 0.00 2.57
5213 6584 3.133901 TGGATGCTACGCCTCTTAATGAA 59.866 43.478 0.00 0.00 0.00 2.57
5214 6585 2.698274 TGGATGCTACGCCTCTTAATGA 59.302 45.455 0.00 0.00 0.00 2.57
5215 6586 3.111853 TGGATGCTACGCCTCTTAATG 57.888 47.619 0.00 0.00 0.00 1.90
5216 6587 3.324846 TCATGGATGCTACGCCTCTTAAT 59.675 43.478 0.00 0.00 0.00 1.40
5217 6588 2.698274 TCATGGATGCTACGCCTCTTAA 59.302 45.455 0.00 0.00 0.00 1.85
5218 6589 2.035961 GTCATGGATGCTACGCCTCTTA 59.964 50.000 0.00 0.00 0.00 2.10
5219 6590 1.123077 TCATGGATGCTACGCCTCTT 58.877 50.000 0.00 0.00 0.00 2.85
5220 6591 0.390860 GTCATGGATGCTACGCCTCT 59.609 55.000 0.00 0.00 0.00 3.69
5221 6592 0.104855 TGTCATGGATGCTACGCCTC 59.895 55.000 0.00 0.00 0.00 4.70
5222 6593 0.541392 TTGTCATGGATGCTACGCCT 59.459 50.000 0.00 0.00 0.00 5.52
5223 6594 0.657840 GTTGTCATGGATGCTACGCC 59.342 55.000 0.00 0.00 0.00 5.68
5224 6595 1.656652 AGTTGTCATGGATGCTACGC 58.343 50.000 0.00 0.00 0.00 4.42
5225 6596 3.261580 TGAAGTTGTCATGGATGCTACG 58.738 45.455 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.