Multiple sequence alignment - TraesCS3D01G327900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G327900 chr3D 100.000 4458 0 0 1 4458 441127460 441131917 0.000000e+00 8233.0
1 TraesCS3D01G327900 chr3D 87.069 116 14 1 2559 2674 388748272 388748386 3.620000e-26 130.0
2 TraesCS3D01G327900 chr3A 92.667 2973 130 37 687 3613 581256623 581259553 0.000000e+00 4202.0
3 TraesCS3D01G327900 chr3A 94.669 619 13 7 1 600 581254366 581254983 0.000000e+00 942.0
4 TraesCS3D01G327900 chr3A 88.406 345 33 5 3876 4215 534540441 534540099 4.150000e-110 409.0
5 TraesCS3D01G327900 chr3A 84.751 341 44 5 3876 4212 502911975 502912311 7.150000e-88 335.0
6 TraesCS3D01G327900 chr3A 81.915 188 32 2 4270 4456 308678454 308678640 1.660000e-34 158.0
7 TraesCS3D01G327900 chr3A 89.655 58 5 1 589 646 581256555 581256611 6.190000e-09 73.1
8 TraesCS3D01G327900 chr3B 93.472 2696 109 30 928 3596 578279800 578282455 0.000000e+00 3941.0
9 TraesCS3D01G327900 chr3B 89.172 942 53 21 1 934 578278485 578279385 0.000000e+00 1129.0
10 TraesCS3D01G327900 chr3B 87.246 345 37 5 3873 4212 542127035 542127377 1.940000e-103 387.0
11 TraesCS3D01G327900 chr3B 90.152 132 11 2 3614 3743 578282572 578282703 2.130000e-38 171.0
12 TraesCS3D01G327900 chr3B 80.905 199 38 0 4258 4456 342864290 342864488 1.660000e-34 158.0
13 TraesCS3D01G327900 chr3B 73.656 186 46 3 4272 4456 366138139 366137956 8.000000e-08 69.4
14 TraesCS3D01G327900 chr2A 86.919 344 39 5 3877 4215 755932814 755932472 9.050000e-102 381.0
15 TraesCS3D01G327900 chr2A 87.395 119 13 2 2559 2676 256208692 256208809 7.780000e-28 135.0
16 TraesCS3D01G327900 chr6D 85.632 348 45 4 3872 4215 289023460 289023114 1.180000e-95 361.0
17 TraesCS3D01G327900 chr6D 99.099 111 0 1 2641 2750 7513387 7513277 9.780000e-47 198.0
18 TraesCS3D01G327900 chr2D 86.446 332 41 4 3873 4200 449559423 449559754 1.180000e-95 361.0
19 TraesCS3D01G327900 chr7D 85.143 350 38 7 3875 4215 579253389 579253045 3.300000e-91 346.0
20 TraesCS3D01G327900 chr7D 88.793 116 12 1 2559 2674 602278526 602278412 1.670000e-29 141.0
21 TraesCS3D01G327900 chr2B 84.241 349 50 3 3871 4215 400368486 400368139 7.150000e-88 335.0
22 TraesCS3D01G327900 chr2B 83.600 250 39 1 4211 4458 400366714 400366465 2.680000e-57 233.0
23 TraesCS3D01G327900 chr2B 74.850 167 37 4 4272 4436 359136607 359136770 2.220000e-08 71.3
24 TraesCS3D01G327900 chr1B 85.538 325 36 6 3874 4194 623885675 623885992 3.320000e-86 329.0
25 TraesCS3D01G327900 chr7A 81.818 198 36 0 4248 4445 493449518 493449321 2.760000e-37 167.0
26 TraesCS3D01G327900 chr7A 75.540 139 31 3 4272 4409 475199907 475199771 1.040000e-06 65.8
27 TraesCS3D01G327900 chr5D 89.189 111 11 1 2559 2668 322773296 322773186 2.160000e-28 137.0
28 TraesCS3D01G327900 chr5B 88.288 111 12 1 2559 2668 374391300 374391190 1.010000e-26 132.0
29 TraesCS3D01G327900 chr5B 74.603 189 42 5 4272 4458 45946489 45946673 1.330000e-10 78.7
30 TraesCS3D01G327900 chr1A 86.207 116 15 1 2559 2674 4372558 4372672 1.680000e-24 124.0
31 TraesCS3D01G327900 chr1A 86.207 116 15 1 2559 2674 293637832 293637946 1.680000e-24 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G327900 chr3D 441127460 441131917 4457 False 8233.000000 8233 100.000000 1 4458 1 chr3D.!!$F2 4457
1 TraesCS3D01G327900 chr3A 581254366 581259553 5187 False 1739.033333 4202 92.330333 1 3613 3 chr3A.!!$F3 3612
2 TraesCS3D01G327900 chr3B 578278485 578282703 4218 False 1747.000000 3941 90.932000 1 3743 3 chr3B.!!$F3 3742
3 TraesCS3D01G327900 chr2B 400366465 400368486 2021 True 284.000000 335 83.920500 3871 4458 2 chr2B.!!$R1 587

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
656 2266 0.036294 GTACTGCCCCTGTCAGTTCC 60.036 60.0 0.77 0.00 41.61 3.62 F
894 2537 0.179111 TCAGACACGATCGGGCATTC 60.179 55.0 19.30 7.92 0.00 2.67 F
2323 4413 0.469144 TGTTTGGAAGGTTCAGGCCC 60.469 55.0 0.00 0.00 0.00 5.80 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2591 4681 0.614979 GTGGGAGTACAGGAGAGCCA 60.615 60.000 0.00 0.00 36.29 4.75 R
2882 4972 4.952262 ATTCAGGAAACATGACATGTCG 57.048 40.909 21.05 10.04 44.07 4.35 R
3761 5975 0.032130 TCCGACAGGCGATCTAATGC 59.968 55.000 0.00 0.00 44.57 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 1.153745 CAGCTTCGAGAGGAACCCG 60.154 63.158 0.00 0.00 0.00 5.28
194 196 3.316588 CGGAGATCGGGGTGATATAGATG 59.683 52.174 0.00 0.00 37.47 2.90
199 201 6.444704 AGATCGGGGTGATATAGATGGTTAT 58.555 40.000 0.00 0.00 37.47 1.89
255 257 1.512996 ATAGCGCTGTCATGCCATGC 61.513 55.000 22.90 0.00 0.00 4.06
397 413 8.694540 GTCATCTACTCATCTCTATTATGGCAT 58.305 37.037 4.88 4.88 0.00 4.40
456 473 4.704965 TCTACGAGTAGCATTCTAGCTGA 58.295 43.478 0.00 0.00 46.11 4.26
483 500 4.630644 AACTGATGTAGGGCTGATATGG 57.369 45.455 0.00 0.00 0.00 2.74
583 606 2.032680 TTCTTATAGCGGTGCCAACC 57.967 50.000 0.00 0.00 43.76 3.77
585 608 1.138266 TCTTATAGCGGTGCCAACCTC 59.862 52.381 0.00 0.00 45.17 3.85
587 610 0.906066 TATAGCGGTGCCAACCTCAA 59.094 50.000 0.00 0.00 45.17 3.02
620 2230 6.920758 CCAAAACAATTGAAGTAAACGGATGA 59.079 34.615 13.59 0.00 0.00 2.92
625 2235 6.932400 ACAATTGAAGTAAACGGATGACTGTA 59.068 34.615 13.59 0.00 34.90 2.74
630 2240 3.762288 AGTAAACGGATGACTGTAGCTGA 59.238 43.478 0.00 0.00 34.90 4.26
631 2241 3.895232 AAACGGATGACTGTAGCTGAT 57.105 42.857 0.00 0.00 34.90 2.90
637 2247 5.755375 ACGGATGACTGTAGCTGATATTTTG 59.245 40.000 0.00 0.00 33.41 2.44
643 2253 6.535150 TGACTGTAGCTGATATTTTGTACTGC 59.465 38.462 0.00 0.00 0.00 4.40
644 2254 5.817816 ACTGTAGCTGATATTTTGTACTGCC 59.182 40.000 0.00 0.00 0.00 4.85
645 2255 5.123227 TGTAGCTGATATTTTGTACTGCCC 58.877 41.667 0.00 0.00 0.00 5.36
646 2256 3.555966 AGCTGATATTTTGTACTGCCCC 58.444 45.455 0.00 0.00 0.00 5.80
647 2257 3.203040 AGCTGATATTTTGTACTGCCCCT 59.797 43.478 0.00 0.00 0.00 4.79
648 2258 3.316308 GCTGATATTTTGTACTGCCCCTG 59.684 47.826 0.00 0.00 0.00 4.45
649 2259 4.526970 CTGATATTTTGTACTGCCCCTGT 58.473 43.478 0.00 0.00 0.00 4.00
650 2260 4.523083 TGATATTTTGTACTGCCCCTGTC 58.477 43.478 0.00 0.00 0.00 3.51
651 2261 2.969821 ATTTTGTACTGCCCCTGTCA 57.030 45.000 0.00 0.00 0.00 3.58
652 2262 2.270352 TTTTGTACTGCCCCTGTCAG 57.730 50.000 0.00 0.00 37.56 3.51
653 2263 1.136828 TTTGTACTGCCCCTGTCAGT 58.863 50.000 0.00 1.18 45.71 3.41
654 2264 1.136828 TTGTACTGCCCCTGTCAGTT 58.863 50.000 0.77 0.00 41.61 3.16
655 2265 0.685097 TGTACTGCCCCTGTCAGTTC 59.315 55.000 0.77 0.00 41.61 3.01
656 2266 0.036294 GTACTGCCCCTGTCAGTTCC 60.036 60.000 0.77 0.00 41.61 3.62
657 2267 0.472925 TACTGCCCCTGTCAGTTCCA 60.473 55.000 0.77 0.00 41.61 3.53
658 2268 1.136329 ACTGCCCCTGTCAGTTCCAT 61.136 55.000 0.00 0.00 41.61 3.41
659 2269 0.393537 CTGCCCCTGTCAGTTCCATC 60.394 60.000 0.00 0.00 0.00 3.51
660 2270 1.133181 TGCCCCTGTCAGTTCCATCA 61.133 55.000 0.00 0.00 0.00 3.07
661 2271 0.257039 GCCCCTGTCAGTTCCATCAT 59.743 55.000 0.00 0.00 0.00 2.45
662 2272 1.490490 GCCCCTGTCAGTTCCATCATA 59.510 52.381 0.00 0.00 0.00 2.15
773 2383 4.883585 TGTCTCAAAAGCATCTTCACAACT 59.116 37.500 0.00 0.00 0.00 3.16
779 2389 6.094742 TCAAAAGCATCTTCACAACTTGTACA 59.905 34.615 0.00 0.00 0.00 2.90
830 2441 7.404671 AAAAGTTACCAGTGACAGTGATTTT 57.595 32.000 12.04 7.72 0.00 1.82
839 2450 6.206243 CCAGTGACAGTGATTTTCTTCAGAAT 59.794 38.462 12.04 0.00 33.54 2.40
861 2500 8.695456 AGAATAAGTTAGTGGGGCAATTATTTG 58.305 33.333 0.00 0.00 35.85 2.32
864 2503 4.956075 AGTTAGTGGGGCAATTATTTGGAG 59.044 41.667 0.00 0.00 33.22 3.86
869 2508 3.960102 TGGGGCAATTATTTGGAGATGAC 59.040 43.478 0.00 0.00 33.22 3.06
891 2534 2.212900 CTGTCAGACACGATCGGGCA 62.213 60.000 19.30 6.34 34.49 5.36
892 2535 1.141881 GTCAGACACGATCGGGCAT 59.858 57.895 19.30 2.56 0.00 4.40
893 2536 0.460284 GTCAGACACGATCGGGCATT 60.460 55.000 19.30 0.00 0.00 3.56
894 2537 0.179111 TCAGACACGATCGGGCATTC 60.179 55.000 19.30 7.92 0.00 2.67
895 2538 1.226974 AGACACGATCGGGCATTCG 60.227 57.895 19.30 0.00 41.04 3.34
896 2539 2.202878 ACACGATCGGGCATTCGG 60.203 61.111 19.30 0.00 39.61 4.30
897 2540 2.967076 CACGATCGGGCATTCGGG 60.967 66.667 20.98 0.16 39.61 5.14
898 2541 4.910585 ACGATCGGGCATTCGGGC 62.911 66.667 20.98 0.00 39.61 6.13
899 2542 4.609018 CGATCGGGCATTCGGGCT 62.609 66.667 7.38 0.00 42.84 5.19
916 2560 1.729881 CTTAGGCTTGGGCGATTGC 59.270 57.895 0.00 0.00 39.81 3.56
1314 3382 3.034635 AGTTCGTGCAGAGGGATTCTAT 58.965 45.455 0.00 0.00 33.83 1.98
1343 3414 8.078596 GCTTTCTGTGATATTTCAGTTCAGTTT 58.921 33.333 7.59 0.00 33.89 2.66
1346 3417 9.778741 TTCTGTGATATTTCAGTTCAGTTTAGT 57.221 29.630 7.59 0.00 33.89 2.24
1347 3418 9.778741 TCTGTGATATTTCAGTTCAGTTTAGTT 57.221 29.630 7.59 0.00 33.89 2.24
1419 3498 4.573900 AGCATTTCAGTCTCTTAGGTGTG 58.426 43.478 0.00 0.00 0.00 3.82
1429 3508 4.280174 GTCTCTTAGGTGTGTGTGTCCTTA 59.720 45.833 0.00 0.00 33.34 2.69
1451 3530 9.319143 CCTTAAGAGTTTGAGATTGGTATACAG 57.681 37.037 3.36 0.00 0.00 2.74
1500 3579 7.066284 ACAGATATAATTCATCGGGCAAATAGC 59.934 37.037 5.51 0.00 44.65 2.97
1528 3607 5.705609 TCTTCCCTGCTTTGTGTTATTTC 57.294 39.130 0.00 0.00 0.00 2.17
1699 3788 9.103861 CCTTTCTTCTGTCCTATTCTATTTGAC 57.896 37.037 0.00 0.00 0.00 3.18
1743 3832 5.904941 TGCCATGCTGAAATTAATTACAGG 58.095 37.500 0.01 0.45 0.00 4.00
2323 4413 0.469144 TGTTTGGAAGGTTCAGGCCC 60.469 55.000 0.00 0.00 0.00 5.80
2372 4462 6.198591 GCGTCTTTCCTGTACACAGTTATATC 59.801 42.308 8.48 0.00 42.27 1.63
2483 4573 1.552578 TGCAGGCTGATGCTGAAAAT 58.447 45.000 20.86 0.00 46.63 1.82
2525 4615 1.051008 ACACAGCAGTCATCAGTGGA 58.949 50.000 0.00 0.00 34.65 4.02
2591 4681 5.707066 AAGAGCTGGAGAACCATTCTATT 57.293 39.130 0.00 0.00 45.87 1.73
2692 4782 2.611224 CCAAAAGACTTGATGGCCTTGC 60.611 50.000 3.32 0.00 0.00 4.01
2882 4972 7.639113 TGAATGGTTAGATGGTAAAATGGAC 57.361 36.000 0.00 0.00 0.00 4.02
3233 5328 8.753133 GGAAGTATTTTCCAAATCTCAAGGATT 58.247 33.333 1.18 0.00 45.61 3.01
3265 5360 1.072331 CCTGGTTATTCTGGGATCCGG 59.928 57.143 5.45 0.00 0.00 5.14
3431 5544 0.399233 GACTACTGCAGGGGGAGGAT 60.399 60.000 19.93 0.00 36.68 3.24
3488 5601 3.560636 ATAGAATCCCCTGGTTTGACG 57.439 47.619 0.00 0.00 0.00 4.35
3505 5618 0.314935 ACGTCAAGCTTGGCAATTGG 59.685 50.000 29.13 15.52 31.86 3.16
3515 5628 3.193267 GCTTGGCAATTGGAGAACACATA 59.807 43.478 7.72 0.00 0.00 2.29
3532 5645 9.787435 AGAACACATAGTTTCAAGGTATAACAA 57.213 29.630 0.00 0.00 41.51 2.83
3553 5666 6.201517 ACAACACTTGATTCTCAAACAATCG 58.798 36.000 0.00 0.00 35.73 3.34
3581 5734 3.004419 CGATGAATTGCAGCTGGATGAAT 59.996 43.478 17.12 0.00 0.00 2.57
3600 5753 4.154347 CAGGACGGCTGGAGGCTC 62.154 72.222 5.78 5.78 41.46 4.70
3624 5836 4.156556 TCATGTGAATCAGCTTGTAAAGGC 59.843 41.667 0.00 0.00 46.35 4.35
3627 5839 2.483877 TGAATCAGCTTGTAAAGGCGTG 59.516 45.455 0.00 0.00 46.35 5.34
3633 5845 1.727335 GCTTGTAAAGGCGTGACTCTC 59.273 52.381 0.00 0.00 46.35 3.20
3678 5890 9.645059 ACAGAATATATCGATTGTAGGTTGATG 57.355 33.333 1.71 0.00 0.00 3.07
3679 5891 9.645059 CAGAATATATCGATTGTAGGTTGATGT 57.355 33.333 1.71 0.00 0.00 3.06
3697 5911 7.307989 GGTTGATGTATAAAATGTGGATCCTCG 60.308 40.741 14.23 0.00 0.00 4.63
3703 5917 3.845781 AAATGTGGATCCTCGCATAGT 57.154 42.857 14.23 4.51 36.93 2.12
3743 5957 2.417933 CTCTGCATTACCAGCTTGTGTC 59.582 50.000 0.00 0.00 32.87 3.67
3744 5958 2.038952 TCTGCATTACCAGCTTGTGTCT 59.961 45.455 0.00 0.00 32.87 3.41
3745 5959 2.417933 CTGCATTACCAGCTTGTGTCTC 59.582 50.000 0.00 0.00 0.00 3.36
3746 5960 2.038952 TGCATTACCAGCTTGTGTCTCT 59.961 45.455 0.00 0.00 0.00 3.10
3747 5961 3.260632 TGCATTACCAGCTTGTGTCTCTA 59.739 43.478 0.00 0.00 0.00 2.43
3748 5962 4.253685 GCATTACCAGCTTGTGTCTCTAA 58.746 43.478 0.00 0.00 0.00 2.10
3749 5963 4.331168 GCATTACCAGCTTGTGTCTCTAAG 59.669 45.833 0.00 0.00 0.00 2.18
3756 5970 4.856115 GCTTGTGTCTCTAAGCAGAATC 57.144 45.455 0.00 0.00 46.43 2.52
3757 5971 4.248859 GCTTGTGTCTCTAAGCAGAATCA 58.751 43.478 0.00 0.00 46.43 2.57
3758 5972 4.874966 GCTTGTGTCTCTAAGCAGAATCAT 59.125 41.667 0.00 0.00 46.43 2.45
3759 5973 6.045318 GCTTGTGTCTCTAAGCAGAATCATA 58.955 40.000 0.00 0.00 46.43 2.15
3760 5974 6.705381 GCTTGTGTCTCTAAGCAGAATCATAT 59.295 38.462 0.00 0.00 46.43 1.78
3761 5975 7.307278 GCTTGTGTCTCTAAGCAGAATCATATG 60.307 40.741 0.00 0.00 46.43 1.78
3762 5976 5.987953 TGTGTCTCTAAGCAGAATCATATGC 59.012 40.000 0.00 0.00 44.12 3.14
3763 5977 5.987953 GTGTCTCTAAGCAGAATCATATGCA 59.012 40.000 0.00 0.00 46.20 3.96
3764 5978 6.649973 GTGTCTCTAAGCAGAATCATATGCAT 59.350 38.462 3.79 3.79 46.20 3.96
3765 5979 7.172875 GTGTCTCTAAGCAGAATCATATGCATT 59.827 37.037 3.54 0.00 46.20 3.56
3766 5980 8.370182 TGTCTCTAAGCAGAATCATATGCATTA 58.630 33.333 3.54 0.00 46.20 1.90
3767 5981 8.871862 GTCTCTAAGCAGAATCATATGCATTAG 58.128 37.037 3.54 0.00 46.20 1.73
3768 5982 8.810041 TCTCTAAGCAGAATCATATGCATTAGA 58.190 33.333 3.54 3.59 46.20 2.10
3769 5983 9.602568 CTCTAAGCAGAATCATATGCATTAGAT 57.397 33.333 3.54 6.11 46.20 1.98
3770 5984 9.597170 TCTAAGCAGAATCATATGCATTAGATC 57.403 33.333 3.54 3.95 46.20 2.75
3771 5985 6.905544 AGCAGAATCATATGCATTAGATCG 57.094 37.500 3.54 3.19 46.20 3.69
3772 5986 5.293814 AGCAGAATCATATGCATTAGATCGC 59.706 40.000 3.54 11.89 46.20 4.58
3773 5987 5.503683 GCAGAATCATATGCATTAGATCGCC 60.504 44.000 3.54 2.91 43.27 5.54
3774 5988 5.816258 CAGAATCATATGCATTAGATCGCCT 59.184 40.000 3.54 4.97 0.00 5.52
3775 5989 5.816258 AGAATCATATGCATTAGATCGCCTG 59.184 40.000 3.54 0.00 0.00 4.85
3776 5990 4.541973 TCATATGCATTAGATCGCCTGT 57.458 40.909 3.54 0.00 0.00 4.00
3777 5991 4.498241 TCATATGCATTAGATCGCCTGTC 58.502 43.478 3.54 0.00 0.00 3.51
3778 5992 1.788258 ATGCATTAGATCGCCTGTCG 58.212 50.000 0.00 0.00 40.15 4.35
3779 5993 0.249447 TGCATTAGATCGCCTGTCGG 60.249 55.000 0.00 0.00 39.05 4.79
3780 5994 0.032130 GCATTAGATCGCCTGTCGGA 59.968 55.000 0.00 0.00 39.05 4.55
3781 5995 1.538204 GCATTAGATCGCCTGTCGGAA 60.538 52.381 0.00 0.00 39.05 4.30
3782 5996 2.128035 CATTAGATCGCCTGTCGGAAC 58.872 52.381 0.00 0.00 39.05 3.62
3783 5997 1.179152 TTAGATCGCCTGTCGGAACA 58.821 50.000 0.00 0.00 39.05 3.18
3784 5998 1.399714 TAGATCGCCTGTCGGAACAT 58.600 50.000 0.00 0.00 39.05 2.71
3785 5999 0.537188 AGATCGCCTGTCGGAACATT 59.463 50.000 0.00 0.00 39.05 2.71
3786 6000 1.066143 AGATCGCCTGTCGGAACATTT 60.066 47.619 0.00 0.00 39.05 2.32
3787 6001 1.062587 GATCGCCTGTCGGAACATTTG 59.937 52.381 0.00 0.00 39.05 2.32
3788 6002 0.034198 TCGCCTGTCGGAACATTTGA 59.966 50.000 0.00 0.00 39.05 2.69
3789 6003 1.086696 CGCCTGTCGGAACATTTGAT 58.913 50.000 0.00 0.00 34.13 2.57
3790 6004 1.202065 CGCCTGTCGGAACATTTGATG 60.202 52.381 0.00 0.00 34.13 3.07
3791 6005 2.083774 GCCTGTCGGAACATTTGATGA 58.916 47.619 0.00 0.00 34.13 2.92
3792 6006 2.487762 GCCTGTCGGAACATTTGATGAA 59.512 45.455 0.00 0.00 34.13 2.57
3793 6007 3.426695 GCCTGTCGGAACATTTGATGAAG 60.427 47.826 0.00 0.00 34.13 3.02
3794 6008 4.002982 CCTGTCGGAACATTTGATGAAGA 58.997 43.478 0.00 0.00 34.13 2.87
3795 6009 4.637534 CCTGTCGGAACATTTGATGAAGAT 59.362 41.667 0.00 0.00 34.13 2.40
3796 6010 5.124457 CCTGTCGGAACATTTGATGAAGATT 59.876 40.000 0.00 0.00 34.13 2.40
3797 6011 5.941733 TGTCGGAACATTTGATGAAGATTG 58.058 37.500 0.00 0.00 0.00 2.67
3798 6012 5.106197 TGTCGGAACATTTGATGAAGATTGG 60.106 40.000 0.00 0.00 0.00 3.16
3799 6013 5.123820 GTCGGAACATTTGATGAAGATTGGA 59.876 40.000 0.00 0.00 0.00 3.53
3800 6014 5.887598 TCGGAACATTTGATGAAGATTGGAT 59.112 36.000 0.00 0.00 0.00 3.41
3801 6015 5.975344 CGGAACATTTGATGAAGATTGGATG 59.025 40.000 0.00 0.00 0.00 3.51
3802 6016 6.278363 GGAACATTTGATGAAGATTGGATGG 58.722 40.000 0.00 0.00 0.00 3.51
3803 6017 5.272283 ACATTTGATGAAGATTGGATGGC 57.728 39.130 0.00 0.00 0.00 4.40
3804 6018 4.100498 ACATTTGATGAAGATTGGATGGCC 59.900 41.667 0.00 0.00 0.00 5.36
3805 6019 3.385314 TTGATGAAGATTGGATGGCCA 57.615 42.857 8.56 8.56 44.17 5.36
3806 6020 2.940158 TGATGAAGATTGGATGGCCAG 58.060 47.619 13.05 0.00 46.91 4.85
3807 6021 2.236766 GATGAAGATTGGATGGCCAGG 58.763 52.381 13.05 0.00 46.91 4.45
3808 6022 1.297968 TGAAGATTGGATGGCCAGGA 58.702 50.000 13.05 0.00 46.91 3.86
3809 6023 1.854939 TGAAGATTGGATGGCCAGGAT 59.145 47.619 13.05 1.71 46.91 3.24
3810 6024 2.245546 TGAAGATTGGATGGCCAGGATT 59.754 45.455 13.05 0.00 46.91 3.01
3811 6025 2.376695 AGATTGGATGGCCAGGATTG 57.623 50.000 13.05 0.00 46.91 2.67
3812 6026 1.854939 AGATTGGATGGCCAGGATTGA 59.145 47.619 13.05 0.00 46.91 2.57
3813 6027 2.245546 AGATTGGATGGCCAGGATTGAA 59.754 45.455 13.05 0.00 46.91 2.69
3814 6028 2.852714 TTGGATGGCCAGGATTGAAT 57.147 45.000 13.05 0.00 46.91 2.57
3815 6029 2.076207 TGGATGGCCAGGATTGAATG 57.924 50.000 13.05 0.00 39.92 2.67
3816 6030 1.335145 GGATGGCCAGGATTGAATGG 58.665 55.000 13.05 0.00 39.73 3.16
3817 6031 1.133388 GGATGGCCAGGATTGAATGGA 60.133 52.381 13.05 0.00 39.02 3.41
3818 6032 2.669781 GATGGCCAGGATTGAATGGAA 58.330 47.619 13.05 0.00 39.02 3.53
3819 6033 2.619697 TGGCCAGGATTGAATGGAAA 57.380 45.000 0.00 0.00 39.02 3.13
3820 6034 2.899975 TGGCCAGGATTGAATGGAAAA 58.100 42.857 0.00 0.00 39.02 2.29
3821 6035 2.566724 TGGCCAGGATTGAATGGAAAAC 59.433 45.455 0.00 0.00 39.02 2.43
3822 6036 2.566724 GGCCAGGATTGAATGGAAAACA 59.433 45.455 0.00 0.00 39.02 2.83
3823 6037 3.588955 GCCAGGATTGAATGGAAAACAC 58.411 45.455 0.00 0.00 39.02 3.32
3824 6038 3.836949 CCAGGATTGAATGGAAAACACG 58.163 45.455 0.00 0.00 39.02 4.49
3825 6039 3.505680 CCAGGATTGAATGGAAAACACGA 59.494 43.478 0.00 0.00 39.02 4.35
3826 6040 4.158394 CCAGGATTGAATGGAAAACACGAT 59.842 41.667 0.00 0.00 39.02 3.73
3827 6041 5.097529 CAGGATTGAATGGAAAACACGATG 58.902 41.667 0.00 0.00 0.00 3.84
3828 6042 4.158394 AGGATTGAATGGAAAACACGATGG 59.842 41.667 0.00 0.00 0.00 3.51
3829 6043 4.082245 GGATTGAATGGAAAACACGATGGT 60.082 41.667 0.00 0.00 0.00 3.55
3830 6044 5.124776 GGATTGAATGGAAAACACGATGGTA 59.875 40.000 0.00 0.00 0.00 3.25
3831 6045 5.621197 TTGAATGGAAAACACGATGGTAG 57.379 39.130 0.00 0.00 0.00 3.18
3832 6046 3.438781 TGAATGGAAAACACGATGGTAGC 59.561 43.478 0.00 0.00 0.00 3.58
3833 6047 1.434555 TGGAAAACACGATGGTAGCG 58.565 50.000 0.00 0.00 0.00 4.26
3834 6048 1.270412 TGGAAAACACGATGGTAGCGT 60.270 47.619 0.00 0.00 43.67 5.07
3835 6049 2.029200 TGGAAAACACGATGGTAGCGTA 60.029 45.455 0.00 0.00 40.44 4.42
3836 6050 2.346545 GGAAAACACGATGGTAGCGTAC 59.653 50.000 0.00 0.00 40.44 3.67
3837 6051 2.728690 AAACACGATGGTAGCGTACA 57.271 45.000 0.00 0.00 40.44 2.90
3838 6052 2.953466 AACACGATGGTAGCGTACAT 57.047 45.000 0.00 0.00 40.44 2.29
3839 6053 2.953466 ACACGATGGTAGCGTACATT 57.047 45.000 0.00 0.00 40.44 2.71
3840 6054 3.241067 ACACGATGGTAGCGTACATTT 57.759 42.857 0.00 0.00 40.44 2.32
3841 6055 3.592059 ACACGATGGTAGCGTACATTTT 58.408 40.909 0.00 0.00 40.44 1.82
3842 6056 3.615496 ACACGATGGTAGCGTACATTTTC 59.385 43.478 0.00 0.00 40.44 2.29
3843 6057 3.863424 CACGATGGTAGCGTACATTTTCT 59.137 43.478 0.00 0.00 40.44 2.52
3844 6058 4.328983 CACGATGGTAGCGTACATTTTCTT 59.671 41.667 0.00 0.00 40.44 2.52
3845 6059 4.328983 ACGATGGTAGCGTACATTTTCTTG 59.671 41.667 0.00 0.00 40.65 3.02
3846 6060 4.588278 GATGGTAGCGTACATTTTCTTGC 58.412 43.478 0.00 0.00 0.00 4.01
3847 6061 3.403968 TGGTAGCGTACATTTTCTTGCA 58.596 40.909 0.00 0.00 0.00 4.08
3848 6062 3.435327 TGGTAGCGTACATTTTCTTGCAG 59.565 43.478 0.00 0.00 0.00 4.41
3849 6063 2.619013 AGCGTACATTTTCTTGCAGC 57.381 45.000 0.00 0.00 0.00 5.25
3850 6064 1.879380 AGCGTACATTTTCTTGCAGCA 59.121 42.857 0.00 0.00 0.00 4.41
3851 6065 2.293122 AGCGTACATTTTCTTGCAGCAA 59.707 40.909 7.81 7.81 0.00 3.91
3852 6066 3.049206 GCGTACATTTTCTTGCAGCAAA 58.951 40.909 9.65 0.00 0.00 3.68
3853 6067 3.489047 GCGTACATTTTCTTGCAGCAAAA 59.511 39.130 9.65 0.88 0.00 2.44
3854 6068 4.026145 GCGTACATTTTCTTGCAGCAAAAA 60.026 37.500 9.65 8.32 0.00 1.94
3855 6069 5.333263 GCGTACATTTTCTTGCAGCAAAAAT 60.333 36.000 9.65 10.30 33.94 1.82
3856 6070 6.128956 GCGTACATTTTCTTGCAGCAAAAATA 60.129 34.615 14.68 2.67 32.76 1.40
3857 6071 7.219922 CGTACATTTTCTTGCAGCAAAAATAC 58.780 34.615 14.68 10.78 32.76 1.89
3858 6072 6.214205 ACATTTTCTTGCAGCAAAAATACG 57.786 33.333 14.68 8.46 32.76 3.06
3859 6073 5.982516 ACATTTTCTTGCAGCAAAAATACGA 59.017 32.000 14.68 3.48 32.76 3.43
3860 6074 6.646240 ACATTTTCTTGCAGCAAAAATACGAT 59.354 30.769 14.68 5.30 32.76 3.73
3861 6075 6.450845 TTTTCTTGCAGCAAAAATACGATG 57.549 33.333 9.65 0.00 0.00 3.84
3862 6076 3.500982 TCTTGCAGCAAAAATACGATGC 58.499 40.909 9.65 0.00 44.58 3.91
3865 6079 3.623066 GCAGCAAAAATACGATGCAAC 57.377 42.857 0.00 0.00 43.80 4.17
3866 6080 3.244976 GCAGCAAAAATACGATGCAACT 58.755 40.909 0.00 0.00 43.80 3.16
3867 6081 3.301642 GCAGCAAAAATACGATGCAACTC 59.698 43.478 0.00 0.00 43.80 3.01
3868 6082 4.726416 CAGCAAAAATACGATGCAACTCT 58.274 39.130 0.00 0.00 42.45 3.24
3869 6083 4.556135 CAGCAAAAATACGATGCAACTCTG 59.444 41.667 0.00 0.00 42.45 3.35
3873 6087 6.317088 CAAAAATACGATGCAACTCTGTCAT 58.683 36.000 0.00 0.00 0.00 3.06
3925 6139 8.632906 ATTTGCCTCATCTATTCAATAAGAGG 57.367 34.615 12.71 12.71 43.04 3.69
3927 6141 5.846164 TGCCTCATCTATTCAATAAGAGGGA 59.154 40.000 16.39 12.97 41.06 4.20
3928 6142 6.013898 TGCCTCATCTATTCAATAAGAGGGAG 60.014 42.308 16.39 9.68 41.06 4.30
3929 6143 6.405538 CCTCATCTATTCAATAAGAGGGAGC 58.594 44.000 10.44 0.00 37.97 4.70
3934 6149 6.139671 TCTATTCAATAAGAGGGAGCAGAGT 58.860 40.000 0.00 0.00 0.00 3.24
3949 6164 6.147985 GGGAGCAGAGTTTAGAGTTTTACAAG 59.852 42.308 0.00 0.00 0.00 3.16
3951 6166 7.117092 GGAGCAGAGTTTAGAGTTTTACAAGAG 59.883 40.741 0.00 0.00 0.00 2.85
3971 6186 1.077787 ACCCACATACACGGCATGG 60.078 57.895 0.00 0.00 0.00 3.66
3982 6197 0.106708 ACGGCATGGCGATTACTCAT 59.893 50.000 43.12 19.23 0.00 2.90
3987 6202 3.696281 CATGGCGATTACTCATGCAAA 57.304 42.857 0.00 0.00 33.06 3.68
3989 6204 4.422840 CATGGCGATTACTCATGCAAAAA 58.577 39.130 0.00 0.00 33.06 1.94
3990 6205 4.717233 TGGCGATTACTCATGCAAAAAT 57.283 36.364 0.00 0.00 0.00 1.82
3995 6210 7.023575 GGCGATTACTCATGCAAAAATATAGG 58.976 38.462 0.00 0.00 0.00 2.57
4014 6229 1.560146 GGCCCTAGTCTTTTAGCACCT 59.440 52.381 0.00 0.00 0.00 4.00
4038 6253 2.166459 GGTTATCCAAAGCTTTGCCTCC 59.834 50.000 29.93 21.49 36.86 4.30
4039 6254 2.825532 GTTATCCAAAGCTTTGCCTCCA 59.174 45.455 29.93 13.04 36.86 3.86
4040 6255 2.014010 ATCCAAAGCTTTGCCTCCAA 57.986 45.000 29.93 12.72 36.86 3.53
4067 6285 1.068127 GTTAAGAAGGATAGGCGGCGA 59.932 52.381 12.98 0.00 0.00 5.54
4082 6300 4.394941 CGACGCGCACTTGTGACG 62.395 66.667 5.73 9.54 0.00 4.35
4085 6303 3.112075 CGCGCACTTGTGACGGAT 61.112 61.111 8.75 0.00 0.00 4.18
4095 6313 2.606213 TGACGGATCACCCTGGCA 60.606 61.111 0.00 0.00 0.00 4.92
4098 6316 0.394352 GACGGATCACCCTGGCATTT 60.394 55.000 0.00 0.00 0.00 2.32
4104 6322 1.675310 CACCCTGGCATTTCGCTCA 60.675 57.895 0.00 0.00 41.91 4.26
4110 6328 1.065102 CTGGCATTTCGCTCATTCCAG 59.935 52.381 0.00 0.00 41.91 3.86
4122 6340 3.623203 GCTCATTCCAGATGGTCCAAGAA 60.623 47.826 0.00 0.00 36.34 2.52
4124 6342 5.197224 TCATTCCAGATGGTCCAAGAAAT 57.803 39.130 0.00 0.00 36.34 2.17
4142 6360 1.898863 ATAAGCATGGTGAGGGAGGT 58.101 50.000 0.00 0.00 0.00 3.85
4144 6362 0.842030 AAGCATGGTGAGGGAGGTCA 60.842 55.000 0.00 0.00 0.00 4.02
4145 6363 0.622738 AGCATGGTGAGGGAGGTCAT 60.623 55.000 0.00 0.00 0.00 3.06
4146 6364 1.131638 GCATGGTGAGGGAGGTCATA 58.868 55.000 0.00 0.00 0.00 2.15
4152 6370 1.109920 TGAGGGAGGTCATAGCGCTC 61.110 60.000 16.34 0.00 40.68 5.03
4153 6371 1.811645 GAGGGAGGTCATAGCGCTCC 61.812 65.000 16.34 9.46 36.10 4.70
4156 6374 2.442272 AGGTCATAGCGCTCCGGT 60.442 61.111 16.34 0.00 41.50 5.28
4171 6389 3.292159 GGTTGGGGACGTGGTTGC 61.292 66.667 0.00 0.00 0.00 4.17
4172 6390 3.292159 GTTGGGGACGTGGTTGCC 61.292 66.667 0.00 0.00 0.00 4.52
4173 6391 4.939368 TTGGGGACGTGGTTGCCG 62.939 66.667 0.00 0.00 0.00 5.69
4177 6395 3.351416 GGACGTGGTTGCCGGTTC 61.351 66.667 1.90 0.00 0.00 3.62
4178 6396 2.280592 GACGTGGTTGCCGGTTCT 60.281 61.111 1.90 0.00 0.00 3.01
4203 6421 4.685447 CACCATTCGTGGACGGAA 57.315 55.556 0.73 0.00 38.96 4.30
4206 6424 0.459585 ACCATTCGTGGACGGAATCG 60.460 55.000 0.73 0.00 40.29 3.34
4225 7872 4.434713 TCGTCAAGATGAAGATGTCGAA 57.565 40.909 0.00 0.00 33.15 3.71
4230 7877 6.529696 GTCAAGATGAAGATGTCGAAAGAAC 58.470 40.000 0.00 0.00 45.01 3.01
4231 7878 6.146184 GTCAAGATGAAGATGTCGAAAGAACA 59.854 38.462 0.00 0.00 45.01 3.18
4234 7881 3.727726 TGAAGATGTCGAAAGAACAGCA 58.272 40.909 0.00 0.00 45.01 4.41
4239 7886 2.013400 TGTCGAAAGAACAGCAGCAAA 58.987 42.857 0.00 0.00 45.01 3.68
4241 7890 3.119673 TGTCGAAAGAACAGCAGCAAAAA 60.120 39.130 0.00 0.00 45.01 1.94
4245 7894 7.838523 TCGAAAGAACAGCAGCAAAAAGCAA 62.839 40.000 0.00 0.00 41.76 3.91
4256 7905 4.290104 GCAAAAAGCAAGAAATTTGGCA 57.710 36.364 0.00 0.00 44.79 4.92
4260 7909 0.322648 AGCAAGAAATTTGGCAGGGC 59.677 50.000 0.00 0.00 0.00 5.19
4262 7911 1.799544 CAAGAAATTTGGCAGGGCAC 58.200 50.000 0.00 0.00 0.00 5.01
4280 7929 1.600636 CCCCAAGCGTTGCAGAAGA 60.601 57.895 0.00 0.00 0.00 2.87
4287 7936 0.391661 GCGTTGCAGAAGATCCAGGA 60.392 55.000 0.00 0.00 0.00 3.86
4288 7937 1.363744 CGTTGCAGAAGATCCAGGAC 58.636 55.000 0.00 0.00 0.00 3.85
4293 7942 2.766263 TGCAGAAGATCCAGGACGTAAT 59.234 45.455 0.00 0.00 0.00 1.89
4294 7943 3.181475 TGCAGAAGATCCAGGACGTAATC 60.181 47.826 0.00 0.00 0.00 1.75
4305 7954 0.108520 GACGTAATCCCGCTTGACCA 60.109 55.000 0.00 0.00 0.00 4.02
4307 7956 1.270947 ACGTAATCCCGCTTGACCAAA 60.271 47.619 0.00 0.00 0.00 3.28
4313 7962 1.611491 TCCCGCTTGACCAAATCAAAC 59.389 47.619 0.00 0.00 46.80 2.93
4349 7998 3.644861 CTTGAAAAGTAGGGCGGGT 57.355 52.632 0.00 0.00 39.70 5.28
4350 7999 2.773993 CTTGAAAAGTAGGGCGGGTA 57.226 50.000 0.00 0.00 39.70 3.69
4379 8028 1.225376 TGTGTAACCTCCGCGCAAAG 61.225 55.000 8.75 3.22 34.36 2.77
4383 8032 1.002142 GTAACCTCCGCGCAAAGTTTT 60.002 47.619 8.75 2.10 0.00 2.43
4384 8033 0.248866 AACCTCCGCGCAAAGTTTTG 60.249 50.000 8.75 0.28 41.03 2.44
4388 8037 0.590230 TCCGCGCAAAGTTTTGAACG 60.590 50.000 8.75 9.88 40.55 3.95
4414 8063 3.261580 TGAAGTTGTCATGGATGCTACG 58.738 45.455 0.00 0.00 0.00 3.51
4417 8066 0.541392 TTGTCATGGATGCTACGCCT 59.459 50.000 0.00 0.00 0.00 5.52
4424 8073 3.111853 TGGATGCTACGCCTCTTAATG 57.888 47.619 0.00 0.00 0.00 1.90
4441 8090 2.907910 ATGAATGCACTTTGAGCGTC 57.092 45.000 0.00 0.00 33.85 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 1.860676 TAAAACAGAACGCTCGCACT 58.139 45.000 0.00 0.00 0.00 4.40
23 24 2.096417 ACATAAAACAGAACGCTCGCAC 60.096 45.455 0.00 0.00 0.00 5.34
24 25 2.096466 CACATAAAACAGAACGCTCGCA 60.096 45.455 0.00 0.00 0.00 5.10
25 26 2.495939 CACATAAAACAGAACGCTCGC 58.504 47.619 0.00 0.00 0.00 5.03
26 27 2.096466 TGCACATAAAACAGAACGCTCG 60.096 45.455 0.00 0.00 0.00 5.03
28 29 2.350772 GCTGCACATAAAACAGAACGCT 60.351 45.455 0.00 0.00 33.10 5.07
64 65 4.722700 TCTGGGCCTTCCAAGCGC 62.723 66.667 4.53 0.00 46.51 5.92
194 196 0.170339 GGCAAACTGCGGACATAACC 59.830 55.000 0.00 0.00 46.21 2.85
199 201 1.034838 AAAGTGGCAAACTGCGGACA 61.035 50.000 0.00 0.00 46.21 4.02
456 473 4.234550 TCAGCCCTACATCAGTTATCCAT 58.765 43.478 0.00 0.00 0.00 3.41
483 500 1.825090 TGGACATCTCACACCAATGC 58.175 50.000 0.00 0.00 0.00 3.56
583 606 5.296283 TCAATTGTTTTGGTTGGCATTTGAG 59.704 36.000 5.13 0.00 31.74 3.02
585 608 5.496133 TCAATTGTTTTGGTTGGCATTTG 57.504 34.783 5.13 0.00 0.00 2.32
587 610 5.192176 ACTTCAATTGTTTTGGTTGGCATT 58.808 33.333 5.13 0.00 0.00 3.56
620 2230 5.817816 GGCAGTACAAAATATCAGCTACAGT 59.182 40.000 0.00 0.00 0.00 3.55
625 2235 3.203040 AGGGGCAGTACAAAATATCAGCT 59.797 43.478 0.00 0.00 0.00 4.24
630 2240 4.018415 ACTGACAGGGGCAGTACAAAATAT 60.018 41.667 2.21 0.00 44.27 1.28
631 2241 3.329520 ACTGACAGGGGCAGTACAAAATA 59.670 43.478 2.21 0.00 44.27 1.40
637 2247 0.036294 GGAACTGACAGGGGCAGTAC 60.036 60.000 4.96 0.00 45.27 2.73
643 2253 2.158755 GGTATGATGGAACTGACAGGGG 60.159 54.545 7.51 0.00 0.00 4.79
644 2254 2.774234 AGGTATGATGGAACTGACAGGG 59.226 50.000 7.51 0.00 0.00 4.45
645 2255 3.198635 ACAGGTATGATGGAACTGACAGG 59.801 47.826 7.51 0.00 33.57 4.00
646 2256 4.437239 GACAGGTATGATGGAACTGACAG 58.563 47.826 0.00 0.00 33.57 3.51
647 2257 3.197766 GGACAGGTATGATGGAACTGACA 59.802 47.826 0.00 0.00 33.57 3.58
648 2258 3.452627 AGGACAGGTATGATGGAACTGAC 59.547 47.826 0.00 0.00 33.57 3.51
649 2259 3.724478 AGGACAGGTATGATGGAACTGA 58.276 45.455 0.00 0.00 33.57 3.41
650 2260 4.494091 AAGGACAGGTATGATGGAACTG 57.506 45.455 0.00 0.00 35.40 3.16
651 2261 5.256474 CAAAAGGACAGGTATGATGGAACT 58.744 41.667 0.00 0.00 0.00 3.01
652 2262 4.399303 CCAAAAGGACAGGTATGATGGAAC 59.601 45.833 0.00 0.00 0.00 3.62
653 2263 4.290985 TCCAAAAGGACAGGTATGATGGAA 59.709 41.667 0.00 0.00 31.87 3.53
654 2264 3.849574 TCCAAAAGGACAGGTATGATGGA 59.150 43.478 0.00 0.00 32.33 3.41
655 2265 4.080356 TCTCCAAAAGGACAGGTATGATGG 60.080 45.833 0.00 0.00 0.00 3.51
656 2266 5.102953 TCTCCAAAAGGACAGGTATGATG 57.897 43.478 0.00 0.00 0.00 3.07
657 2267 5.398353 CCATCTCCAAAAGGACAGGTATGAT 60.398 44.000 0.00 0.00 0.00 2.45
658 2268 4.080356 CCATCTCCAAAAGGACAGGTATGA 60.080 45.833 0.00 0.00 0.00 2.15
659 2269 4.202441 CCATCTCCAAAAGGACAGGTATG 58.798 47.826 0.00 0.00 0.00 2.39
660 2270 3.203040 CCCATCTCCAAAAGGACAGGTAT 59.797 47.826 0.00 0.00 0.00 2.73
661 2271 2.576191 CCCATCTCCAAAAGGACAGGTA 59.424 50.000 0.00 0.00 0.00 3.08
662 2272 1.355720 CCCATCTCCAAAAGGACAGGT 59.644 52.381 0.00 0.00 0.00 4.00
807 2417 6.828785 AGAAAATCACTGTCACTGGTAACTTT 59.171 34.615 0.00 0.00 37.61 2.66
811 2421 6.353323 TGAAGAAAATCACTGTCACTGGTAA 58.647 36.000 0.00 0.00 0.00 2.85
830 2441 4.534500 TGCCCCACTAACTTATTCTGAAGA 59.466 41.667 0.00 0.00 0.00 2.87
839 2450 6.494952 TCCAAATAATTGCCCCACTAACTTA 58.505 36.000 0.00 0.00 35.10 2.24
846 2457 3.960102 TCATCTCCAAATAATTGCCCCAC 59.040 43.478 0.00 0.00 35.10 4.61
869 2508 1.534805 CCCGATCGTGTCTGACAGATG 60.535 57.143 20.06 11.15 0.00 2.90
891 2534 1.227383 CCCAAGCCTAAGCCCGAAT 59.773 57.895 0.00 0.00 41.25 3.34
892 2535 2.674754 CCCAAGCCTAAGCCCGAA 59.325 61.111 0.00 0.00 41.25 4.30
893 2536 4.109675 GCCCAAGCCTAAGCCCGA 62.110 66.667 0.00 0.00 41.25 5.14
895 2538 2.911221 AATCGCCCAAGCCTAAGCCC 62.911 60.000 0.00 0.00 41.25 5.19
896 2539 1.453928 AATCGCCCAAGCCTAAGCC 60.454 57.895 0.00 0.00 41.25 4.35
897 2540 1.729881 CAATCGCCCAAGCCTAAGC 59.270 57.895 0.00 0.00 40.32 3.09
898 2541 1.031571 TGCAATCGCCCAAGCCTAAG 61.032 55.000 0.00 0.00 37.32 2.18
899 2542 1.001517 TGCAATCGCCCAAGCCTAA 60.002 52.632 0.00 0.00 37.32 2.69
926 2570 1.815613 CACCAGTCGATCACTCTCAGT 59.184 52.381 0.00 0.00 30.26 3.41
1155 3220 2.509336 GCCTCGACCATCACCACG 60.509 66.667 0.00 0.00 0.00 4.94
1272 3340 1.007336 GTGGATTATACGGCTCGGCG 61.007 60.000 11.46 11.46 0.00 6.46
1305 3373 9.732130 AATATCACAGAAAGCTAATAGAATCCC 57.268 33.333 0.00 0.00 0.00 3.85
1314 3382 8.846943 TGAACTGAAATATCACAGAAAGCTAA 57.153 30.769 13.58 0.00 37.54 3.09
1343 3414 4.215908 ACTGGTGAGAACTGACTGAACTA 58.784 43.478 0.00 0.00 0.00 2.24
1344 3415 3.034635 ACTGGTGAGAACTGACTGAACT 58.965 45.455 0.00 0.00 0.00 3.01
1345 3416 3.181475 TGACTGGTGAGAACTGACTGAAC 60.181 47.826 0.00 0.00 0.00 3.18
1346 3417 3.031013 TGACTGGTGAGAACTGACTGAA 58.969 45.455 0.00 0.00 0.00 3.02
1347 3418 2.362397 GTGACTGGTGAGAACTGACTGA 59.638 50.000 0.00 0.00 0.00 3.41
1419 3498 6.073003 CCAATCTCAAACTCTTAAGGACACAC 60.073 42.308 1.85 0.00 0.00 3.82
1477 3556 7.320443 TGCTATTTGCCCGATGAATTATATC 57.680 36.000 0.00 0.00 42.00 1.63
1500 3579 3.571401 ACACAAAGCAGGGAAGAAGATTG 59.429 43.478 0.00 0.00 0.00 2.67
1699 3788 4.382754 GCAAGAAAGCACTTTGGTAATTCG 59.617 41.667 0.00 0.00 32.11 3.34
2146 4236 3.403968 GAGAGTGTGAAAAGGGACCTTC 58.596 50.000 3.71 0.00 34.84 3.46
2185 4275 6.802348 ACGTAGCGCTATTTCAGTTATCTATG 59.198 38.462 21.96 2.41 0.00 2.23
2273 4363 3.503748 AGCTCATTTGAGAAGGAAAACGG 59.496 43.478 11.70 0.00 44.74 4.44
2323 4413 7.062138 CGCATGGGAAATATTTTTGGATTATCG 59.938 37.037 3.11 0.00 0.00 2.92
2372 4462 9.559958 GAAGTGGACTAACATAAAATGAACATG 57.440 33.333 0.00 0.00 0.00 3.21
2423 4513 7.838771 TCACATGACAGTATGAGAAGATTTG 57.161 36.000 0.00 0.00 39.69 2.32
2483 4573 6.071051 TGTTATATGATATGGTTGCGCCTAGA 60.071 38.462 4.18 0.00 38.35 2.43
2525 4615 1.348064 TCCCTTCATCTCCAACACGT 58.652 50.000 0.00 0.00 0.00 4.49
2591 4681 0.614979 GTGGGAGTACAGGAGAGCCA 60.615 60.000 0.00 0.00 36.29 4.75
2882 4972 4.952262 ATTCAGGAAACATGACATGTCG 57.048 40.909 21.05 10.04 44.07 4.35
3100 5195 8.131731 ACAACATCTTAGCTTTTTCAAGAAGAC 58.868 33.333 5.63 0.00 29.85 3.01
3233 5328 3.806949 ATAACCAGGCTCCAAAGAACA 57.193 42.857 0.00 0.00 0.00 3.18
3380 5493 2.070783 GCTTCACGGGTTTGTCGATTA 58.929 47.619 0.00 0.00 0.00 1.75
3382 5495 0.034896 AGCTTCACGGGTTTGTCGAT 59.965 50.000 0.00 0.00 0.00 3.59
3383 5496 0.878523 CAGCTTCACGGGTTTGTCGA 60.879 55.000 0.00 0.00 0.00 4.20
3384 5497 0.878523 TCAGCTTCACGGGTTTGTCG 60.879 55.000 0.00 0.00 0.00 4.35
3385 5498 1.002792 GTTCAGCTTCACGGGTTTGTC 60.003 52.381 0.00 0.00 0.00 3.18
3431 5544 0.618458 GCCCAGGAATACTGTGGACA 59.382 55.000 4.46 0.00 46.06 4.02
3438 5551 3.190439 AGTTAACCAGCCCAGGAATACT 58.810 45.455 0.88 0.00 0.00 2.12
3488 5601 1.888512 TCTCCAATTGCCAAGCTTGAC 59.111 47.619 28.05 17.51 0.00 3.18
3505 5618 9.431887 TGTTATACCTTGAAACTATGTGTTCTC 57.568 33.333 0.00 0.00 38.03 2.87
3515 5628 8.691661 ATCAAGTGTTGTTATACCTTGAAACT 57.308 30.769 4.70 0.00 33.88 2.66
3553 5666 1.066605 AGCTGCAATTCATCGATTGGC 59.933 47.619 1.02 0.00 37.47 4.52
3600 5753 5.675575 GCCTTTACAAGCTGATTCACATGAG 60.676 44.000 0.00 0.00 0.00 2.90
3624 5836 4.096532 TCAACTATAAGCTGGAGAGTCACG 59.903 45.833 0.00 0.00 0.00 4.35
3627 5839 9.036671 GTTTATTCAACTATAAGCTGGAGAGTC 57.963 37.037 0.00 0.00 31.92 3.36
3664 5876 9.950680 CCACATTTTATACATCAACCTACAATC 57.049 33.333 0.00 0.00 0.00 2.67
3669 5881 8.723365 AGGATCCACATTTTATACATCAACCTA 58.277 33.333 15.82 0.00 0.00 3.08
3670 5882 7.586349 AGGATCCACATTTTATACATCAACCT 58.414 34.615 15.82 0.00 0.00 3.50
3675 5887 5.700832 TGCGAGGATCCACATTTTATACATC 59.299 40.000 15.82 0.00 0.00 3.06
3676 5888 5.620206 TGCGAGGATCCACATTTTATACAT 58.380 37.500 15.82 0.00 0.00 2.29
3677 5889 5.029807 TGCGAGGATCCACATTTTATACA 57.970 39.130 15.82 0.00 0.00 2.29
3678 5890 6.874134 ACTATGCGAGGATCCACATTTTATAC 59.126 38.462 15.82 0.00 31.66 1.47
3679 5891 7.004555 ACTATGCGAGGATCCACATTTTATA 57.995 36.000 15.82 2.70 31.66 0.98
3680 5892 5.869579 ACTATGCGAGGATCCACATTTTAT 58.130 37.500 15.82 1.62 31.66 1.40
3681 5893 5.290493 ACTATGCGAGGATCCACATTTTA 57.710 39.130 15.82 0.00 31.66 1.52
3682 5894 4.156455 ACTATGCGAGGATCCACATTTT 57.844 40.909 15.82 2.63 31.66 1.82
3686 5900 3.627395 AAAACTATGCGAGGATCCACA 57.373 42.857 15.82 9.61 0.00 4.17
3697 5911 4.079253 TCCTCTTCCCACAAAAACTATGC 58.921 43.478 0.00 0.00 0.00 3.14
3703 5917 4.034285 GAGGATCCTCTTCCCACAAAAA 57.966 45.455 31.11 0.00 39.80 1.94
3733 5947 3.309961 TCTGCTTAGAGACACAAGCTG 57.690 47.619 7.71 7.24 45.89 4.24
3743 5957 8.999220 TCTAATGCATATGATTCTGCTTAGAG 57.001 34.615 6.97 0.00 39.16 2.43
3744 5958 9.597170 GATCTAATGCATATGATTCTGCTTAGA 57.403 33.333 6.97 15.23 39.51 2.10
3745 5959 8.541312 CGATCTAATGCATATGATTCTGCTTAG 58.459 37.037 6.97 3.23 39.16 2.18
3746 5960 7.010830 GCGATCTAATGCATATGATTCTGCTTA 59.989 37.037 6.97 0.00 39.16 3.09
3747 5961 6.183360 GCGATCTAATGCATATGATTCTGCTT 60.183 38.462 6.97 0.00 39.16 3.91
3748 5962 5.293814 GCGATCTAATGCATATGATTCTGCT 59.706 40.000 6.97 0.00 39.16 4.24
3749 5963 5.499935 GCGATCTAATGCATATGATTCTGC 58.500 41.667 6.97 13.36 38.87 4.26
3750 5964 5.816258 AGGCGATCTAATGCATATGATTCTG 59.184 40.000 6.97 9.17 0.00 3.02
3751 5965 5.816258 CAGGCGATCTAATGCATATGATTCT 59.184 40.000 6.97 9.80 0.00 2.40
3752 5966 5.583854 ACAGGCGATCTAATGCATATGATTC 59.416 40.000 6.97 9.56 0.00 2.52
3753 5967 5.494724 ACAGGCGATCTAATGCATATGATT 58.505 37.500 6.97 6.30 0.00 2.57
3754 5968 5.095145 ACAGGCGATCTAATGCATATGAT 57.905 39.130 6.97 12.39 0.00 2.45
3755 5969 4.498241 GACAGGCGATCTAATGCATATGA 58.502 43.478 6.97 1.33 0.00 2.15
3756 5970 3.305361 CGACAGGCGATCTAATGCATATG 59.695 47.826 0.00 0.00 44.57 1.78
3757 5971 3.515630 CGACAGGCGATCTAATGCATAT 58.484 45.455 0.00 0.00 44.57 1.78
3758 5972 2.352715 CCGACAGGCGATCTAATGCATA 60.353 50.000 0.00 0.00 44.57 3.14
3759 5973 1.606480 CCGACAGGCGATCTAATGCAT 60.606 52.381 0.00 0.00 44.57 3.96
3760 5974 0.249447 CCGACAGGCGATCTAATGCA 60.249 55.000 0.00 0.00 44.57 3.96
3761 5975 0.032130 TCCGACAGGCGATCTAATGC 59.968 55.000 0.00 0.00 44.57 3.56
3762 5976 2.128035 GTTCCGACAGGCGATCTAATG 58.872 52.381 0.00 0.00 44.57 1.90
3763 5977 1.754803 TGTTCCGACAGGCGATCTAAT 59.245 47.619 0.00 0.00 44.57 1.73
3764 5978 1.179152 TGTTCCGACAGGCGATCTAA 58.821 50.000 0.00 0.00 44.57 2.10
3765 5979 1.399714 ATGTTCCGACAGGCGATCTA 58.600 50.000 0.00 0.00 44.57 1.98
3766 5980 0.537188 AATGTTCCGACAGGCGATCT 59.463 50.000 0.00 0.00 44.57 2.75
3767 5981 1.062587 CAAATGTTCCGACAGGCGATC 59.937 52.381 0.00 0.00 44.57 3.69
3768 5982 1.086696 CAAATGTTCCGACAGGCGAT 58.913 50.000 0.00 0.00 44.57 4.58
3769 5983 0.034198 TCAAATGTTCCGACAGGCGA 59.966 50.000 0.00 0.00 44.57 5.54
3770 5984 1.086696 ATCAAATGTTCCGACAGGCG 58.913 50.000 0.00 0.00 39.58 5.52
3771 5985 2.083774 TCATCAAATGTTCCGACAGGC 58.916 47.619 0.00 0.00 39.58 4.85
3772 5986 4.002982 TCTTCATCAAATGTTCCGACAGG 58.997 43.478 0.00 0.00 39.58 4.00
3773 5987 5.808042 ATCTTCATCAAATGTTCCGACAG 57.192 39.130 0.00 0.00 39.58 3.51
3774 5988 5.106197 CCAATCTTCATCAAATGTTCCGACA 60.106 40.000 0.00 0.00 40.71 4.35
3775 5989 5.123820 TCCAATCTTCATCAAATGTTCCGAC 59.876 40.000 0.00 0.00 0.00 4.79
3776 5990 5.252547 TCCAATCTTCATCAAATGTTCCGA 58.747 37.500 0.00 0.00 0.00 4.55
3777 5991 5.565592 TCCAATCTTCATCAAATGTTCCG 57.434 39.130 0.00 0.00 0.00 4.30
3778 5992 6.278363 CCATCCAATCTTCATCAAATGTTCC 58.722 40.000 0.00 0.00 0.00 3.62
3779 5993 5.751990 GCCATCCAATCTTCATCAAATGTTC 59.248 40.000 0.00 0.00 0.00 3.18
3780 5994 5.395990 GGCCATCCAATCTTCATCAAATGTT 60.396 40.000 0.00 0.00 0.00 2.71
3781 5995 4.100498 GGCCATCCAATCTTCATCAAATGT 59.900 41.667 0.00 0.00 0.00 2.71
3782 5996 4.100344 TGGCCATCCAATCTTCATCAAATG 59.900 41.667 0.00 0.00 39.99 2.32
3783 5997 4.291792 TGGCCATCCAATCTTCATCAAAT 58.708 39.130 0.00 0.00 39.99 2.32
3784 5998 3.702548 CTGGCCATCCAATCTTCATCAAA 59.297 43.478 5.51 0.00 42.91 2.69
3785 5999 3.293337 CTGGCCATCCAATCTTCATCAA 58.707 45.455 5.51 0.00 42.91 2.57
3786 6000 2.423803 CCTGGCCATCCAATCTTCATCA 60.424 50.000 5.51 0.00 42.91 3.07
3787 6001 2.158564 TCCTGGCCATCCAATCTTCATC 60.159 50.000 5.51 0.00 42.91 2.92
3788 6002 1.854939 TCCTGGCCATCCAATCTTCAT 59.145 47.619 5.51 0.00 42.91 2.57
3789 6003 1.297968 TCCTGGCCATCCAATCTTCA 58.702 50.000 5.51 0.00 42.91 3.02
3790 6004 2.626743 CAATCCTGGCCATCCAATCTTC 59.373 50.000 5.51 0.00 42.91 2.87
3791 6005 2.245546 TCAATCCTGGCCATCCAATCTT 59.754 45.455 5.51 0.00 42.91 2.40
3792 6006 1.854939 TCAATCCTGGCCATCCAATCT 59.145 47.619 5.51 0.00 42.91 2.40
3793 6007 2.369983 TCAATCCTGGCCATCCAATC 57.630 50.000 5.51 0.00 42.91 2.67
3794 6008 2.852714 TTCAATCCTGGCCATCCAAT 57.147 45.000 5.51 0.00 42.91 3.16
3795 6009 2.390696 CATTCAATCCTGGCCATCCAA 58.609 47.619 5.51 0.00 42.91 3.53
3796 6010 1.411930 CCATTCAATCCTGGCCATCCA 60.412 52.381 5.51 0.00 40.85 3.41
3797 6011 1.133388 TCCATTCAATCCTGGCCATCC 60.133 52.381 5.51 0.00 32.30 3.51
3798 6012 2.369983 TCCATTCAATCCTGGCCATC 57.630 50.000 5.51 0.00 32.30 3.51
3799 6013 2.852714 TTCCATTCAATCCTGGCCAT 57.147 45.000 5.51 0.00 32.30 4.40
3800 6014 2.566724 GTTTTCCATTCAATCCTGGCCA 59.433 45.455 4.71 4.71 32.30 5.36
3801 6015 2.566724 TGTTTTCCATTCAATCCTGGCC 59.433 45.455 0.00 0.00 32.30 5.36
3802 6016 3.588955 GTGTTTTCCATTCAATCCTGGC 58.411 45.455 0.00 0.00 32.30 4.85
3803 6017 3.505680 TCGTGTTTTCCATTCAATCCTGG 59.494 43.478 0.00 0.00 0.00 4.45
3804 6018 4.764679 TCGTGTTTTCCATTCAATCCTG 57.235 40.909 0.00 0.00 0.00 3.86
3805 6019 4.158394 CCATCGTGTTTTCCATTCAATCCT 59.842 41.667 0.00 0.00 0.00 3.24
3806 6020 4.082245 ACCATCGTGTTTTCCATTCAATCC 60.082 41.667 0.00 0.00 0.00 3.01
3807 6021 5.059404 ACCATCGTGTTTTCCATTCAATC 57.941 39.130 0.00 0.00 0.00 2.67
3808 6022 5.393027 GCTACCATCGTGTTTTCCATTCAAT 60.393 40.000 0.00 0.00 0.00 2.57
3809 6023 4.083003 GCTACCATCGTGTTTTCCATTCAA 60.083 41.667 0.00 0.00 0.00 2.69
3810 6024 3.438781 GCTACCATCGTGTTTTCCATTCA 59.561 43.478 0.00 0.00 0.00 2.57
3811 6025 3.485216 CGCTACCATCGTGTTTTCCATTC 60.485 47.826 0.00 0.00 0.00 2.67
3812 6026 2.418628 CGCTACCATCGTGTTTTCCATT 59.581 45.455 0.00 0.00 0.00 3.16
3813 6027 2.006888 CGCTACCATCGTGTTTTCCAT 58.993 47.619 0.00 0.00 0.00 3.41
3814 6028 1.270412 ACGCTACCATCGTGTTTTCCA 60.270 47.619 0.00 0.00 38.88 3.53
3815 6029 1.435577 ACGCTACCATCGTGTTTTCC 58.564 50.000 0.00 0.00 38.88 3.13
3816 6030 2.988493 TGTACGCTACCATCGTGTTTTC 59.012 45.455 0.00 0.00 40.69 2.29
3817 6031 3.029320 TGTACGCTACCATCGTGTTTT 57.971 42.857 0.00 0.00 40.69 2.43
3818 6032 2.728690 TGTACGCTACCATCGTGTTT 57.271 45.000 0.00 0.00 40.69 2.83
3819 6033 2.953466 ATGTACGCTACCATCGTGTT 57.047 45.000 0.00 0.00 40.69 3.32
3820 6034 2.953466 AATGTACGCTACCATCGTGT 57.047 45.000 0.00 0.00 40.69 4.49
3821 6035 3.863424 AGAAAATGTACGCTACCATCGTG 59.137 43.478 0.00 0.00 40.69 4.35
3822 6036 4.119442 AGAAAATGTACGCTACCATCGT 57.881 40.909 0.00 0.00 43.20 3.73
3823 6037 4.782195 GCAAGAAAATGTACGCTACCATCG 60.782 45.833 0.00 0.00 0.00 3.84
3824 6038 4.094294 TGCAAGAAAATGTACGCTACCATC 59.906 41.667 0.00 0.00 0.00 3.51
3825 6039 4.006989 TGCAAGAAAATGTACGCTACCAT 58.993 39.130 0.00 0.00 0.00 3.55
3826 6040 3.403968 TGCAAGAAAATGTACGCTACCA 58.596 40.909 0.00 0.00 0.00 3.25
3827 6041 3.727970 GCTGCAAGAAAATGTACGCTACC 60.728 47.826 0.00 0.00 34.07 3.18
3828 6042 3.120338 TGCTGCAAGAAAATGTACGCTAC 60.120 43.478 0.00 0.00 34.07 3.58
3829 6043 3.070748 TGCTGCAAGAAAATGTACGCTA 58.929 40.909 0.00 0.00 34.07 4.26
3830 6044 1.879380 TGCTGCAAGAAAATGTACGCT 59.121 42.857 0.00 0.00 34.07 5.07
3831 6045 2.330231 TGCTGCAAGAAAATGTACGC 57.670 45.000 0.00 0.00 34.07 4.42
3832 6046 5.633996 TTTTTGCTGCAAGAAAATGTACG 57.366 34.783 14.99 0.00 42.19 3.67
3833 6047 7.114247 TCGTATTTTTGCTGCAAGAAAATGTAC 59.886 33.333 24.61 18.81 42.19 2.90
3834 6048 7.142021 TCGTATTTTTGCTGCAAGAAAATGTA 58.858 30.769 24.61 11.75 42.19 2.29
3835 6049 5.982516 TCGTATTTTTGCTGCAAGAAAATGT 59.017 32.000 24.61 12.53 42.19 2.71
3836 6050 6.450845 TCGTATTTTTGCTGCAAGAAAATG 57.549 33.333 24.61 16.29 42.19 2.32
3837 6051 6.401367 GCATCGTATTTTTGCTGCAAGAAAAT 60.401 34.615 20.13 21.05 42.19 1.82
3838 6052 5.107530 GCATCGTATTTTTGCTGCAAGAAAA 60.108 36.000 20.13 16.37 40.53 2.29
3839 6053 4.385447 GCATCGTATTTTTGCTGCAAGAAA 59.615 37.500 20.13 18.96 34.07 2.52
3840 6054 3.919804 GCATCGTATTTTTGCTGCAAGAA 59.080 39.130 18.84 18.84 34.07 2.52
3841 6055 3.057666 TGCATCGTATTTTTGCTGCAAGA 60.058 39.130 15.39 8.45 36.75 3.02
3842 6056 3.244156 TGCATCGTATTTTTGCTGCAAG 58.756 40.909 15.39 2.99 36.75 4.01
3843 6057 3.294816 TGCATCGTATTTTTGCTGCAA 57.705 38.095 11.69 11.69 36.75 4.08
3844 6058 2.985809 GTTGCATCGTATTTTTGCTGCA 59.014 40.909 0.00 0.00 37.80 4.41
3845 6059 3.244976 AGTTGCATCGTATTTTTGCTGC 58.755 40.909 0.00 0.00 37.28 5.25
3846 6060 4.556135 CAGAGTTGCATCGTATTTTTGCTG 59.444 41.667 0.00 0.00 37.28 4.41
3847 6061 4.216257 ACAGAGTTGCATCGTATTTTTGCT 59.784 37.500 0.00 0.00 37.28 3.91
3848 6062 4.475944 ACAGAGTTGCATCGTATTTTTGC 58.524 39.130 0.00 0.00 36.91 3.68
3849 6063 5.688823 TGACAGAGTTGCATCGTATTTTTG 58.311 37.500 0.00 0.00 0.00 2.44
3850 6064 5.940192 TGACAGAGTTGCATCGTATTTTT 57.060 34.783 0.00 0.00 0.00 1.94
3851 6065 6.500684 AATGACAGAGTTGCATCGTATTTT 57.499 33.333 0.00 0.00 0.00 1.82
3852 6066 6.500684 AAATGACAGAGTTGCATCGTATTT 57.499 33.333 0.00 0.00 0.00 1.40
3853 6067 6.500684 AAAATGACAGAGTTGCATCGTATT 57.499 33.333 0.00 0.00 0.00 1.89
3854 6068 6.500684 AAAAATGACAGAGTTGCATCGTAT 57.499 33.333 0.00 0.00 0.00 3.06
3855 6069 5.940192 AAAAATGACAGAGTTGCATCGTA 57.060 34.783 0.00 0.00 0.00 3.43
3856 6070 4.836125 AAAAATGACAGAGTTGCATCGT 57.164 36.364 0.00 0.00 0.00 3.73
3883 6097 3.059665 GCAAATCTTTTGCCTCCGTTTTG 60.060 43.478 12.74 0.00 39.38 2.44
3884 6098 3.130633 GCAAATCTTTTGCCTCCGTTTT 58.869 40.909 12.74 0.00 39.38 2.43
3916 6130 6.127196 ACTCTAAACTCTGCTCCCTCTTATTG 60.127 42.308 0.00 0.00 0.00 1.90
3925 6139 6.929606 TCTTGTAAAACTCTAAACTCTGCTCC 59.070 38.462 0.00 0.00 0.00 4.70
3927 6141 6.425417 GCTCTTGTAAAACTCTAAACTCTGCT 59.575 38.462 0.00 0.00 0.00 4.24
3928 6142 6.202954 TGCTCTTGTAAAACTCTAAACTCTGC 59.797 38.462 0.00 0.00 0.00 4.26
3929 6143 7.307455 GGTGCTCTTGTAAAACTCTAAACTCTG 60.307 40.741 0.00 0.00 0.00 3.35
3934 6149 5.529800 GTGGGTGCTCTTGTAAAACTCTAAA 59.470 40.000 0.00 0.00 0.00 1.85
3949 6164 2.106683 GCCGTGTATGTGGGTGCTC 61.107 63.158 0.00 0.00 0.00 4.26
3951 6166 1.748879 ATGCCGTGTATGTGGGTGC 60.749 57.895 0.00 0.00 0.00 5.01
3971 6186 6.524586 GCCTATATTTTTGCATGAGTAATCGC 59.475 38.462 0.00 0.00 0.00 4.58
3982 6197 5.646692 AGACTAGGGCCTATATTTTTGCA 57.353 39.130 14.95 0.00 0.00 4.08
3987 6202 7.225011 GTGCTAAAAGACTAGGGCCTATATTT 58.775 38.462 14.95 14.20 0.00 1.40
3989 6204 5.248705 GGTGCTAAAAGACTAGGGCCTATAT 59.751 44.000 14.95 5.36 0.00 0.86
3990 6205 4.591924 GGTGCTAAAAGACTAGGGCCTATA 59.408 45.833 14.95 1.25 0.00 1.31
3995 6210 2.633488 CAGGTGCTAAAAGACTAGGGC 58.367 52.381 0.00 0.00 0.00 5.19
4014 6229 1.067915 GCAAAGCTTTGGATAACCGCA 60.068 47.619 34.02 0.00 38.57 5.69
4017 6232 2.166459 GGAGGCAAAGCTTTGGATAACC 59.834 50.000 34.02 26.35 38.57 2.85
4020 6235 2.897271 TGGAGGCAAAGCTTTGGATA 57.103 45.000 34.02 4.66 38.57 2.59
4022 6237 1.133513 TCTTGGAGGCAAAGCTTTGGA 60.134 47.619 34.02 20.69 38.57 3.53
4038 6253 6.146837 CGCCTATCCTTCTTAACATCATCTTG 59.853 42.308 0.00 0.00 0.00 3.02
4039 6254 6.226787 CGCCTATCCTTCTTAACATCATCTT 58.773 40.000 0.00 0.00 0.00 2.40
4040 6255 5.279708 CCGCCTATCCTTCTTAACATCATCT 60.280 44.000 0.00 0.00 0.00 2.90
4067 6285 3.858868 ATCCGTCACAAGTGCGCGT 62.859 57.895 8.43 0.00 0.00 6.01
4069 6287 2.027073 TGATCCGTCACAAGTGCGC 61.027 57.895 0.00 0.00 0.00 6.09
4080 6298 0.394352 GAAATGCCAGGGTGATCCGT 60.394 55.000 0.00 0.00 41.52 4.69
4082 6300 1.728490 GCGAAATGCCAGGGTGATCC 61.728 60.000 0.00 0.00 37.76 3.36
4095 6313 3.209410 GACCATCTGGAATGAGCGAAAT 58.791 45.455 2.55 0.00 38.94 2.17
4098 6316 0.465705 GGACCATCTGGAATGAGCGA 59.534 55.000 2.55 0.00 38.94 4.93
4104 6322 5.595952 GCTTATTTCTTGGACCATCTGGAAT 59.404 40.000 2.55 0.00 38.94 3.01
4110 6328 4.646492 ACCATGCTTATTTCTTGGACCATC 59.354 41.667 0.00 0.00 34.13 3.51
4122 6340 2.173569 GACCTCCCTCACCATGCTTATT 59.826 50.000 0.00 0.00 0.00 1.40
4124 6342 1.204146 GACCTCCCTCACCATGCTTA 58.796 55.000 0.00 0.00 0.00 3.09
4142 6360 2.499205 CCAACCGGAGCGCTATGA 59.501 61.111 11.50 0.00 0.00 2.15
4144 6362 3.861797 CCCCAACCGGAGCGCTAT 61.862 66.667 11.50 0.00 0.00 2.97
4152 6370 4.259131 AACCACGTCCCCAACCGG 62.259 66.667 0.00 0.00 0.00 5.28
4153 6371 2.975799 CAACCACGTCCCCAACCG 60.976 66.667 0.00 0.00 0.00 4.44
4156 6374 4.939368 CGGCAACCACGTCCCCAA 62.939 66.667 0.00 0.00 0.00 4.12
4164 6382 0.818040 ACAAGAGAACCGGCAACCAC 60.818 55.000 0.00 0.00 0.00 4.16
4165 6383 0.534203 GACAAGAGAACCGGCAACCA 60.534 55.000 0.00 0.00 0.00 3.67
4171 6389 1.003718 GGTGGGACAAGAGAACCGG 60.004 63.158 0.00 0.00 44.16 5.28
4172 6390 0.324943 ATGGTGGGACAAGAGAACCG 59.675 55.000 0.00 0.00 44.16 4.44
4173 6391 2.437413 GAATGGTGGGACAAGAGAACC 58.563 52.381 0.00 0.00 44.16 3.62
4177 6395 1.442769 CACGAATGGTGGGACAAGAG 58.557 55.000 0.00 0.00 44.16 2.85
4178 6396 3.623848 CACGAATGGTGGGACAAGA 57.376 52.632 0.00 0.00 44.16 3.02
4200 6418 4.208047 CGACATCTTCATCTTGACGATTCC 59.792 45.833 0.00 0.00 33.75 3.01
4203 6421 4.639135 TCGACATCTTCATCTTGACGAT 57.361 40.909 0.00 0.00 36.02 3.73
4206 6424 6.146184 TGTTCTTTCGACATCTTCATCTTGAC 59.854 38.462 0.00 0.00 0.00 3.18
4207 6425 6.223120 TGTTCTTTCGACATCTTCATCTTGA 58.777 36.000 0.00 0.00 0.00 3.02
4225 7872 2.965572 TGCTTTTTGCTGCTGTTCTT 57.034 40.000 0.00 0.00 43.37 2.52
4230 7877 4.806342 AATTTCTTGCTTTTTGCTGCTG 57.194 36.364 0.00 0.00 43.37 4.41
4231 7878 4.035909 CCAAATTTCTTGCTTTTTGCTGCT 59.964 37.500 0.00 0.00 43.37 4.24
4234 7881 3.946558 TGCCAAATTTCTTGCTTTTTGCT 59.053 34.783 0.00 0.00 43.37 3.91
4239 7886 2.811504 GCCCTGCCAAATTTCTTGCTTT 60.812 45.455 0.00 0.00 0.00 3.51
4241 7890 0.322648 GCCCTGCCAAATTTCTTGCT 59.677 50.000 0.00 0.00 0.00 3.91
4245 7894 1.194121 GGGTGCCCTGCCAAATTTCT 61.194 55.000 0.00 0.00 0.00 2.52
4250 7899 4.163463 TTGGGGTGCCCTGCCAAA 62.163 61.111 7.26 0.00 45.70 3.28
4256 7905 4.974721 CAACGCTTGGGGTGCCCT 62.975 66.667 7.26 0.00 45.70 5.19
4260 7909 2.133742 CTTCTGCAACGCTTGGGGTG 62.134 60.000 0.00 0.00 0.00 4.61
4262 7911 0.962356 ATCTTCTGCAACGCTTGGGG 60.962 55.000 0.00 0.00 0.00 4.96
4267 7916 0.392193 CCTGGATCTTCTGCAACGCT 60.392 55.000 0.00 0.00 0.00 5.07
4268 7917 0.391661 TCCTGGATCTTCTGCAACGC 60.392 55.000 0.00 0.00 0.00 4.84
4274 7923 3.243907 GGGATTACGTCCTGGATCTTCTG 60.244 52.174 0.00 0.00 46.91 3.02
4287 7936 0.322322 TTGGTCAAGCGGGATTACGT 59.678 50.000 0.00 0.00 35.98 3.57
4288 7937 1.444836 TTTGGTCAAGCGGGATTACG 58.555 50.000 0.00 0.00 0.00 3.18
4293 7942 1.611491 GTTTGATTTGGTCAAGCGGGA 59.389 47.619 0.00 0.00 46.85 5.14
4294 7943 2.064573 GTTTGATTTGGTCAAGCGGG 57.935 50.000 0.00 0.00 46.85 6.13
4297 7946 1.000274 AGGCGTTTGATTTGGTCAAGC 60.000 47.619 0.00 0.00 46.85 4.01
4305 7954 4.278170 TGACATCAAGAAGGCGTTTGATTT 59.722 37.500 10.16 5.96 40.93 2.17
4307 7956 3.411446 TGACATCAAGAAGGCGTTTGAT 58.589 40.909 7.89 7.89 42.98 2.57
4340 7989 0.621609 AGTGCAAAATACCCGCCCTA 59.378 50.000 0.00 0.00 0.00 3.53
4346 7995 4.279922 AGGTTACACAAGTGCAAAATACCC 59.720 41.667 0.00 0.00 0.00 3.69
4349 7998 4.214545 CGGAGGTTACACAAGTGCAAAATA 59.785 41.667 0.00 0.00 0.00 1.40
4350 7999 3.004315 CGGAGGTTACACAAGTGCAAAAT 59.996 43.478 0.00 0.00 0.00 1.82
4379 8028 6.252281 TGACAACTTCATGTACGTTCAAAAC 58.748 36.000 0.00 0.00 32.57 2.43
4413 8062 4.100529 CAAAGTGCATTCATTAAGAGGCG 58.899 43.478 0.00 0.00 32.80 5.52
4414 8063 5.314923 TCAAAGTGCATTCATTAAGAGGC 57.685 39.130 0.00 0.00 0.00 4.70
4417 8066 4.455533 ACGCTCAAAGTGCATTCATTAAGA 59.544 37.500 0.00 0.00 0.00 2.10
4424 8073 0.179215 CCGACGCTCAAAGTGCATTC 60.179 55.000 0.00 0.00 0.00 2.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.