Multiple sequence alignment - TraesCS3D01G327100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G327100 chr3D 100.000 3995 0 0 1 3995 439527723 439523729 0.000000e+00 7378
1 TraesCS3D01G327100 chr3B 90.467 3556 172 66 1 3485 576171807 576168348 0.000000e+00 4534
2 TraesCS3D01G327100 chr3B 85.506 1097 98 32 2217 3276 802681638 802680566 0.000000e+00 1088
3 TraesCS3D01G327100 chr3B 89.493 276 20 5 3638 3906 576161926 576161653 1.380000e-89 340
4 TraesCS3D01G327100 chr3A 90.649 1957 81 48 8 1932 578954583 578952697 0.000000e+00 2507
5 TraesCS3D01G327100 chr3A 90.340 1325 83 21 1975 3273 578952689 578951384 0.000000e+00 1696
6 TraesCS3D01G327100 chr3A 88.968 281 27 2 3512 3791 578950866 578950589 1.060000e-90 344
7 TraesCS3D01G327100 chr3A 93.467 199 12 1 3798 3995 578883122 578882924 1.090000e-75 294
8 TraesCS3D01G327100 chr3A 92.405 79 5 1 1392 1470 455035548 455035471 1.170000e-20 111
9 TraesCS3D01G327100 chr1A 85.077 1099 105 33 2217 3276 589577050 589575972 0.000000e+00 1066
10 TraesCS3D01G327100 chr6A 84.076 1099 112 38 2217 3276 437566191 437565117 0.000000e+00 1002
11 TraesCS3D01G327100 chr2A 83.880 1098 114 37 2217 3276 47574929 47573857 0.000000e+00 989
12 TraesCS3D01G327100 chr4A 88.112 286 29 4 2217 2501 526046491 526046210 6.400000e-88 335
13 TraesCS3D01G327100 chr5A 87.762 286 30 4 2217 2501 81742844 81743125 2.980000e-86 329
14 TraesCS3D01G327100 chr5A 87.324 284 29 6 2220 2501 8489789 8489511 6.440000e-83 318
15 TraesCS3D01G327100 chr7A 87.413 286 30 5 2217 2501 71387387 71387667 1.380000e-84 324
16 TraesCS3D01G327100 chr4D 94.048 84 5 0 1388 1471 29642009 29641926 1.170000e-25 128
17 TraesCS3D01G327100 chr5D 92.771 83 6 0 1388 1470 378050708 378050626 1.950000e-23 121
18 TraesCS3D01G327100 chr2D 92.771 83 6 0 1388 1470 570985748 570985830 1.950000e-23 121
19 TraesCS3D01G327100 chr5B 91.566 83 7 0 1388 1470 512196603 512196521 9.070000e-22 115
20 TraesCS3D01G327100 chr1B 90.361 83 8 0 1388 1470 217693699 217693781 4.220000e-20 110


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G327100 chr3D 439523729 439527723 3994 True 7378.000000 7378 100.000000 1 3995 1 chr3D.!!$R1 3994
1 TraesCS3D01G327100 chr3B 576168348 576171807 3459 True 4534.000000 4534 90.467000 1 3485 1 chr3B.!!$R2 3484
2 TraesCS3D01G327100 chr3B 802680566 802681638 1072 True 1088.000000 1088 85.506000 2217 3276 1 chr3B.!!$R3 1059
3 TraesCS3D01G327100 chr3A 578950589 578954583 3994 True 1515.666667 2507 89.985667 8 3791 3 chr3A.!!$R3 3783
4 TraesCS3D01G327100 chr1A 589575972 589577050 1078 True 1066.000000 1066 85.077000 2217 3276 1 chr1A.!!$R1 1059
5 TraesCS3D01G327100 chr6A 437565117 437566191 1074 True 1002.000000 1002 84.076000 2217 3276 1 chr6A.!!$R1 1059
6 TraesCS3D01G327100 chr2A 47573857 47574929 1072 True 989.000000 989 83.880000 2217 3276 1 chr2A.!!$R1 1059

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
90 92 0.108281 TTTGTTGGACGTGACGGTGA 60.108 50.0 10.66 0.0 0.00 4.02 F
667 696 0.783524 GTCGTCGTCGTCGTAGTGTG 60.784 60.0 11.41 0.0 38.33 3.82 F
1926 1989 0.172803 CGCCAGGTACTACCACTCAC 59.827 60.0 8.01 0.0 41.95 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1919 1982 0.034059 GAGTGGTGAGTGGTGAGTGG 59.966 60.0 0.00 0.0 0.00 4.00 R
1940 2010 0.249868 CGGCAGGTGAAGTTGAGTGA 60.250 55.0 0.00 0.0 0.00 3.41 R
3031 3190 0.108329 CTCCGCGACCACTGGTAAAT 60.108 55.0 8.23 0.0 35.25 1.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 66 0.322008 GAGGTCTGAGCAACCAAGGG 60.322 60.000 9.78 0.00 39.39 3.95
65 67 0.768221 AGGTCTGAGCAACCAAGGGA 60.768 55.000 9.78 0.00 39.39 4.20
66 68 0.322008 GGTCTGAGCAACCAAGGGAG 60.322 60.000 1.28 0.00 36.75 4.30
68 70 1.072331 GTCTGAGCAACCAAGGGAGAA 59.928 52.381 0.00 0.00 0.00 2.87
69 71 1.774254 TCTGAGCAACCAAGGGAGAAA 59.226 47.619 0.00 0.00 0.00 2.52
70 72 2.174639 TCTGAGCAACCAAGGGAGAAAA 59.825 45.455 0.00 0.00 0.00 2.29
72 74 3.575687 CTGAGCAACCAAGGGAGAAAATT 59.424 43.478 0.00 0.00 0.00 1.82
73 75 3.966665 TGAGCAACCAAGGGAGAAAATTT 59.033 39.130 0.00 0.00 0.00 1.82
75 77 3.711190 AGCAACCAAGGGAGAAAATTTGT 59.289 39.130 0.00 0.00 0.00 2.83
76 78 4.164030 AGCAACCAAGGGAGAAAATTTGTT 59.836 37.500 0.00 0.00 0.00 2.83
77 79 4.273235 GCAACCAAGGGAGAAAATTTGTTG 59.727 41.667 0.00 0.00 0.00 3.33
78 80 4.687901 ACCAAGGGAGAAAATTTGTTGG 57.312 40.909 0.00 1.89 39.13 3.77
79 81 4.294347 ACCAAGGGAGAAAATTTGTTGGA 58.706 39.130 14.60 0.00 37.10 3.53
85 87 4.287720 GGAGAAAATTTGTTGGACGTGAC 58.712 43.478 0.00 0.00 0.00 3.67
87 89 2.766970 AAATTTGTTGGACGTGACGG 57.233 45.000 10.66 0.00 0.00 4.79
88 90 1.670791 AATTTGTTGGACGTGACGGT 58.329 45.000 10.66 0.00 0.00 4.83
90 92 0.108281 TTTGTTGGACGTGACGGTGA 60.108 50.000 10.66 0.00 0.00 4.02
92 94 1.952635 GTTGGACGTGACGGTGACC 60.953 63.158 10.66 7.81 0.00 4.02
93 95 2.129146 TTGGACGTGACGGTGACCT 61.129 57.895 10.66 0.00 0.00 3.85
94 96 2.079020 TTGGACGTGACGGTGACCTC 62.079 60.000 10.66 0.00 0.00 3.85
95 97 2.126965 GACGTGACGGTGACCTCG 60.127 66.667 10.66 2.07 0.00 4.63
96 98 4.338539 ACGTGACGGTGACCTCGC 62.339 66.667 10.66 2.44 0.00 5.03
152 154 1.776034 GCACGGCTCGATCCAAATCC 61.776 60.000 6.06 0.00 0.00 3.01
182 184 1.263356 TGCTCGGCTTAACCACTAGT 58.737 50.000 0.00 0.00 39.03 2.57
240 242 3.761311 AACGCACGGTTGTTTTTCTAA 57.239 38.095 0.00 0.00 37.50 2.10
241 243 3.328237 ACGCACGGTTGTTTTTCTAAG 57.672 42.857 0.00 0.00 0.00 2.18
242 244 2.679336 ACGCACGGTTGTTTTTCTAAGT 59.321 40.909 0.00 0.00 0.00 2.24
243 245 3.033185 CGCACGGTTGTTTTTCTAAGTG 58.967 45.455 0.00 0.00 0.00 3.16
260 262 9.515020 TTTCTAAGTGTAATGTGCAAGAAAAAG 57.485 29.630 0.00 0.00 30.95 2.27
326 328 5.163794 CGGAAATGCTACGATAAAGTTTGGT 60.164 40.000 0.00 0.00 0.00 3.67
335 337 3.659786 GATAAAGTTTGGTGGTTTGGCC 58.340 45.455 0.00 0.00 37.90 5.36
442 450 1.878953 ACGTGCACTACAAAAGGAGG 58.121 50.000 16.19 0.00 0.00 4.30
527 553 2.089980 CAACCAAATCCTCCTCTGCAG 58.910 52.381 7.63 7.63 0.00 4.41
534 560 4.479786 AATCCTCCTCTGCAGAGTAAAC 57.520 45.455 35.47 0.00 40.48 2.01
537 563 3.904339 TCCTCCTCTGCAGAGTAAACTTT 59.096 43.478 35.47 0.00 40.48 2.66
538 564 5.084519 TCCTCCTCTGCAGAGTAAACTTTA 58.915 41.667 35.47 14.28 40.48 1.85
539 565 5.047235 TCCTCCTCTGCAGAGTAAACTTTAC 60.047 44.000 35.47 3.77 40.48 2.01
541 567 5.784177 TCCTCTGCAGAGTAAACTTTACAG 58.216 41.667 35.47 19.15 40.48 2.74
543 569 6.041637 TCCTCTGCAGAGTAAACTTTACAGAA 59.958 38.462 35.47 8.86 40.48 3.02
544 570 6.367422 CCTCTGCAGAGTAAACTTTACAGAAG 59.633 42.308 35.47 15.16 40.48 2.85
545 571 5.696724 TCTGCAGAGTAAACTTTACAGAAGC 59.303 40.000 13.74 11.07 30.58 3.86
546 572 5.364778 TGCAGAGTAAACTTTACAGAAGCA 58.635 37.500 13.08 12.96 0.00 3.91
547 573 5.466728 TGCAGAGTAAACTTTACAGAAGCAG 59.533 40.000 13.08 0.00 0.00 4.24
548 574 5.696724 GCAGAGTAAACTTTACAGAAGCAGA 59.303 40.000 13.08 0.00 0.00 4.26
549 575 6.128688 GCAGAGTAAACTTTACAGAAGCAGAG 60.129 42.308 13.08 0.00 0.00 3.35
550 576 7.148641 CAGAGTAAACTTTACAGAAGCAGAGA 58.851 38.462 13.08 0.00 0.00 3.10
551 577 7.115663 CAGAGTAAACTTTACAGAAGCAGAGAC 59.884 40.741 13.08 0.00 0.00 3.36
552 578 6.817184 AGTAAACTTTACAGAAGCAGAGACA 58.183 36.000 13.08 0.00 0.00 3.41
553 579 5.993106 AAACTTTACAGAAGCAGAGACAC 57.007 39.130 0.00 0.00 0.00 3.67
564 590 2.237751 AGAGACACGCACGCACAAC 61.238 57.895 0.00 0.00 0.00 3.32
651 680 3.545481 GCACCATGCTCGTCGTCG 61.545 66.667 0.00 0.00 40.96 5.12
667 696 0.783524 GTCGTCGTCGTCGTAGTGTG 60.784 60.000 11.41 0.00 38.33 3.82
668 697 2.136191 CGTCGTCGTCGTAGTGTGC 61.136 63.158 3.67 0.00 38.33 4.57
670 702 1.058590 GTCGTCGTCGTAGTGTGCTG 61.059 60.000 1.33 0.00 38.33 4.41
740 772 1.675641 CTTTCCGGTGGGGCAAGAG 60.676 63.158 0.00 0.00 34.94 2.85
961 999 2.981909 CACCAGCACCAGCACCAG 60.982 66.667 0.00 0.00 45.49 4.00
962 1000 4.962836 ACCAGCACCAGCACCAGC 62.963 66.667 0.00 0.00 45.49 4.85
963 1001 4.960866 CCAGCACCAGCACCAGCA 62.961 66.667 0.00 0.00 45.49 4.41
964 1002 3.667282 CAGCACCAGCACCAGCAC 61.667 66.667 0.00 0.00 45.49 4.40
965 1003 4.962836 AGCACCAGCACCAGCACC 62.963 66.667 0.00 0.00 45.49 5.01
967 1005 2.981909 CACCAGCACCAGCACCAG 60.982 66.667 0.00 0.00 45.49 4.00
968 1006 4.962836 ACCAGCACCAGCACCAGC 62.963 66.667 0.00 0.00 45.49 4.85
1008 1060 1.118838 CTTCTCGAGGGATGCTTCCT 58.881 55.000 17.48 5.73 42.20 3.36
1700 1761 5.005490 GCGAGGTAGTTAACAGCAGTTATTC 59.995 44.000 8.61 0.46 39.78 1.75
1744 1806 3.334583 TGATCCGCCATTAGATTAGGC 57.665 47.619 0.00 0.00 44.89 3.93
1788 1851 3.551485 CCGTTGTTTCTTTCCTGCAAAAG 59.449 43.478 4.75 4.75 37.55 2.27
1813 1876 3.859411 GTCATTGTTTAATGGCGGGAA 57.141 42.857 0.00 0.00 43.11 3.97
1923 1986 4.029472 CCGCCAGGTACTACCACT 57.971 61.111 8.01 0.00 41.95 4.00
1924 1987 1.814527 CCGCCAGGTACTACCACTC 59.185 63.158 8.01 0.00 41.95 3.51
1925 1988 0.968901 CCGCCAGGTACTACCACTCA 60.969 60.000 8.01 0.00 41.95 3.41
1926 1989 0.172803 CGCCAGGTACTACCACTCAC 59.827 60.000 8.01 0.00 41.95 3.51
1927 1990 0.535797 GCCAGGTACTACCACTCACC 59.464 60.000 8.01 0.00 41.95 4.02
1928 1991 1.933021 CCAGGTACTACCACTCACCA 58.067 55.000 8.01 0.00 41.95 4.17
1929 1992 1.549170 CCAGGTACTACCACTCACCAC 59.451 57.143 8.01 0.00 41.95 4.16
1930 1993 2.526432 CAGGTACTACCACTCACCACT 58.474 52.381 8.01 0.00 41.95 4.00
1931 1994 2.492484 CAGGTACTACCACTCACCACTC 59.508 54.545 8.01 0.00 41.95 3.51
1932 1995 2.109480 AGGTACTACCACTCACCACTCA 59.891 50.000 8.01 0.00 41.95 3.41
1933 1996 2.230750 GGTACTACCACTCACCACTCAC 59.769 54.545 0.00 0.00 38.42 3.51
1940 2010 1.345741 CACTCACCACTCACCACTCAT 59.654 52.381 0.00 0.00 0.00 2.90
1946 2016 1.620323 CCACTCACCACTCATCACTCA 59.380 52.381 0.00 0.00 0.00 3.41
2049 2125 4.638304 TCAGTGACCGATCGAGATATGTA 58.362 43.478 18.66 0.00 0.00 2.29
2052 2128 4.396478 AGTGACCGATCGAGATATGTATGG 59.604 45.833 18.66 0.00 0.00 2.74
2053 2129 4.156190 GTGACCGATCGAGATATGTATGGT 59.844 45.833 18.66 0.20 0.00 3.55
2074 2156 2.017138 TTAATGCGTGAAGGCGATCA 57.983 45.000 0.00 0.00 35.06 2.92
2094 2177 4.870636 TCAGAGCATGGGATATTTTGGTT 58.129 39.130 0.00 0.00 0.00 3.67
2095 2178 6.012337 TCAGAGCATGGGATATTTTGGTTA 57.988 37.500 0.00 0.00 0.00 2.85
2098 2181 5.776716 AGAGCATGGGATATTTTGGTTATGG 59.223 40.000 0.00 0.00 0.00 2.74
2102 2185 7.053498 GCATGGGATATTTTGGTTATGGTTTT 58.947 34.615 0.00 0.00 0.00 2.43
2107 2190 9.772973 GGGATATTTTGGTTATGGTTTTAATCC 57.227 33.333 0.00 0.00 0.00 3.01
2118 2201 4.269183 TGGTTTTAATCCGATGCTGATGT 58.731 39.130 0.00 0.00 0.00 3.06
2241 2324 2.266055 CAGGACCTCCACGCTTCC 59.734 66.667 0.00 0.00 38.89 3.46
2243 2326 4.452733 GGACCTCCACGCTTCCGG 62.453 72.222 0.00 0.00 39.22 5.14
2320 2403 1.697982 AGGATTTCCCCTACGGTATGC 59.302 52.381 0.00 0.00 34.07 3.14
2330 2417 3.748048 CCCTACGGTATGCATGATTCTTG 59.252 47.826 10.16 0.00 0.00 3.02
2347 2449 0.960364 TTGTTCCTGCAGAATCGGCC 60.960 55.000 17.39 0.00 36.69 6.13
2373 2476 3.291585 CAATGCGAAATTCTATCGGTGC 58.708 45.455 0.61 0.00 40.54 5.01
2396 2500 1.248101 GCCTGGCATTTGGTAACGGT 61.248 55.000 15.17 0.00 42.51 4.83
2397 2501 0.525761 CCTGGCATTTGGTAACGGTG 59.474 55.000 0.00 0.00 42.51 4.94
2398 2502 1.243902 CTGGCATTTGGTAACGGTGT 58.756 50.000 0.00 0.00 42.51 4.16
2405 2509 3.870633 TTTGGTAACGGTGTTGCTTTT 57.129 38.095 0.00 0.00 42.51 2.27
2588 2727 1.258982 CATAGTCGGATCAACTTGCGC 59.741 52.381 0.00 0.00 0.00 6.09
2620 2761 1.542108 GCTACAGTCTGATCATGGCCC 60.542 57.143 6.91 0.00 0.00 5.80
2621 2762 2.045524 CTACAGTCTGATCATGGCCCT 58.954 52.381 6.91 0.00 0.00 5.19
2663 2806 1.268948 GCCGTTCGTCCTATCCAGTAC 60.269 57.143 0.00 0.00 0.00 2.73
2677 2820 1.202200 CCAGTACGCACAGTCTAGAGC 60.202 57.143 0.00 0.00 0.00 4.09
2691 2837 8.247562 CACAGTCTAGAGCCTGTTAATATATCC 58.752 40.741 12.15 0.00 39.83 2.59
2733 2879 4.582869 TCTTATCCATATCCACAGCATGC 58.417 43.478 10.51 10.51 42.53 4.06
2762 2912 3.969117 TTCTTCTGTCATTGTGTGTGC 57.031 42.857 0.00 0.00 0.00 4.57
2767 2919 1.094650 TGTCATTGTGTGTGCGTGCT 61.095 50.000 0.00 0.00 0.00 4.40
2892 3048 0.036294 GGAAAGACCACCGGGAGAAG 60.036 60.000 6.32 0.00 38.79 2.85
2904 3060 2.059190 GGAGAAGGGGGACGAGACC 61.059 68.421 0.00 0.00 0.00 3.85
3007 3163 3.250280 GCTCAGCTGAACATGGACATATG 59.750 47.826 18.85 0.00 0.00 1.78
3021 3180 0.659427 CATATGGCCGCTCAGTTGTG 59.341 55.000 0.00 0.00 0.00 3.33
3028 3187 2.249535 CGCTCAGTTGTGCAGCTGT 61.250 57.895 16.64 0.00 40.07 4.40
3029 3188 1.779025 CGCTCAGTTGTGCAGCTGTT 61.779 55.000 16.64 0.00 40.07 3.16
3030 3189 0.383231 GCTCAGTTGTGCAGCTGTTT 59.617 50.000 16.64 0.00 40.07 2.83
3031 3190 1.603802 GCTCAGTTGTGCAGCTGTTTA 59.396 47.619 16.64 0.00 40.07 2.01
3032 3191 2.227388 GCTCAGTTGTGCAGCTGTTTAT 59.773 45.455 16.64 0.00 40.07 1.40
3047 3210 2.737783 TGTTTATTTACCAGTGGTCGCG 59.262 45.455 20.72 0.00 37.09 5.87
3166 3329 0.106149 GGGTACGCGGGATTTCAGAT 59.894 55.000 12.47 0.00 0.00 2.90
3267 3431 1.825281 GCTGCTGCCGGATCCTAGAT 61.825 60.000 5.05 0.00 0.00 1.98
3285 3449 9.790344 ATCCTAGATTTGTAGATTTCTGGAATG 57.210 33.333 0.00 0.00 0.00 2.67
3306 3541 7.360946 GGAATGTTACCTGGTATAAATCGATGC 60.361 40.741 7.50 0.00 0.00 3.91
3343 3581 2.766263 CCAGTCATTGTAGCCAGGTAGA 59.234 50.000 0.00 0.00 0.00 2.59
3344 3582 3.181471 CCAGTCATTGTAGCCAGGTAGAG 60.181 52.174 0.00 0.00 0.00 2.43
3345 3583 3.449018 CAGTCATTGTAGCCAGGTAGAGT 59.551 47.826 0.00 0.00 0.00 3.24
3346 3584 4.645136 CAGTCATTGTAGCCAGGTAGAGTA 59.355 45.833 0.00 0.00 0.00 2.59
3347 3585 4.890581 AGTCATTGTAGCCAGGTAGAGTAG 59.109 45.833 0.00 0.00 0.00 2.57
3359 3597 6.071840 GCCAGGTAGAGTAGTATATCCAGTTG 60.072 46.154 0.00 0.00 0.00 3.16
3464 3792 2.371841 TCTGGCCAATGAGTACAAGTGT 59.628 45.455 7.01 0.00 0.00 3.55
3466 3794 4.225042 TCTGGCCAATGAGTACAAGTGTAT 59.775 41.667 7.01 0.00 32.54 2.29
3489 3818 3.935818 TCTATCCGAGAGAGGAACAGT 57.064 47.619 0.00 0.00 44.50 3.55
3491 3820 5.369409 TCTATCCGAGAGAGGAACAGTAA 57.631 43.478 0.00 0.00 44.50 2.24
3492 3821 5.752650 TCTATCCGAGAGAGGAACAGTAAA 58.247 41.667 0.00 0.00 44.50 2.01
3493 3822 4.722361 ATCCGAGAGAGGAACAGTAAAC 57.278 45.455 0.00 0.00 44.50 2.01
3495 3824 4.087182 TCCGAGAGAGGAACAGTAAACAT 58.913 43.478 0.00 0.00 37.36 2.71
3497 3826 5.011738 TCCGAGAGAGGAACAGTAAACATTT 59.988 40.000 0.00 0.00 37.36 2.32
3498 3827 5.120830 CCGAGAGAGGAACAGTAAACATTTG 59.879 44.000 0.00 0.00 0.00 2.32
3499 3828 5.120830 CGAGAGAGGAACAGTAAACATTTGG 59.879 44.000 0.00 0.00 0.00 3.28
3500 3829 6.187727 AGAGAGGAACAGTAAACATTTGGA 57.812 37.500 0.00 0.00 0.00 3.53
3501 3830 5.998363 AGAGAGGAACAGTAAACATTTGGAC 59.002 40.000 0.00 0.00 0.00 4.02
3502 3831 5.690865 AGAGGAACAGTAAACATTTGGACA 58.309 37.500 0.00 0.00 0.00 4.02
3503 3832 6.306987 AGAGGAACAGTAAACATTTGGACAT 58.693 36.000 0.00 0.00 0.00 3.06
3506 3835 6.207417 AGGAACAGTAAACATTTGGACATGAG 59.793 38.462 0.00 0.00 0.00 2.90
3510 3958 8.044060 ACAGTAAACATTTGGACATGAGTATG 57.956 34.615 0.00 0.00 40.24 2.39
3522 3970 7.090082 TGGACATGAGTATGTACCTGACTGAT 61.090 42.308 0.00 0.00 45.85 2.90
3563 4011 3.693300 GCACATGCAAAGTCATTTTCG 57.307 42.857 0.00 0.00 41.59 3.46
3594 4042 1.755179 GCAAATGCTTCCTAGAGCCA 58.245 50.000 0.00 0.00 42.01 4.75
3606 4054 5.152623 TCCTAGAGCCAAATTGGATATCG 57.847 43.478 17.47 2.46 35.51 2.92
3619 4067 9.003658 CAAATTGGATATCGGCTTCTATAAGTT 57.996 33.333 0.00 0.00 34.99 2.66
3622 4070 7.962964 TGGATATCGGCTTCTATAAGTTTTG 57.037 36.000 0.00 0.00 34.99 2.44
3624 4072 6.935208 GGATATCGGCTTCTATAAGTTTTGGT 59.065 38.462 0.00 0.00 34.99 3.67
3638 4086 5.622770 AGTTTTGGTTTCTACAATAGCCG 57.377 39.130 0.00 0.00 0.00 5.52
3663 4111 6.980593 GGTACCCATATTATACACACGTACA 58.019 40.000 0.00 0.00 0.00 2.90
3680 4128 7.117812 CACACGTACATTTTGAGAATAAGTCCT 59.882 37.037 0.00 0.00 0.00 3.85
3682 4130 6.092259 ACGTACATTTTGAGAATAAGTCCTGC 59.908 38.462 0.00 0.00 0.00 4.85
3685 4133 5.416952 ACATTTTGAGAATAAGTCCTGCCAG 59.583 40.000 0.00 0.00 0.00 4.85
3704 4152 7.917505 CCTGCCAGAACAGTAAATAATCAAATC 59.082 37.037 0.00 0.00 35.83 2.17
3723 4171 0.877071 CAACTGTAGCAGCTGGTTGG 59.123 55.000 25.47 15.95 34.37 3.77
3763 4211 7.980099 GGTAGTGAAGTATACAGTTAATGCACT 59.020 37.037 5.50 6.08 36.85 4.40
3766 4214 9.587772 AGTGAAGTATACAGTTAATGCACTTAG 57.412 33.333 5.50 0.00 32.10 2.18
3767 4215 8.818057 GTGAAGTATACAGTTAATGCACTTAGG 58.182 37.037 5.50 0.00 32.10 2.69
3791 4239 8.537016 AGGTTTTGTATGTTGCACTAGTCTATA 58.463 33.333 0.00 0.00 0.00 1.31
3792 4240 9.326413 GGTTTTGTATGTTGCACTAGTCTATAT 57.674 33.333 0.00 0.00 0.00 0.86
3800 4248 9.935241 ATGTTGCACTAGTCTATATTTAGATGG 57.065 33.333 0.00 0.00 36.84 3.51
3801 4249 8.924303 TGTTGCACTAGTCTATATTTAGATGGT 58.076 33.333 0.00 0.00 36.84 3.55
3802 4250 9.197694 GTTGCACTAGTCTATATTTAGATGGTG 57.802 37.037 0.00 13.32 36.84 4.17
3803 4251 8.478775 TGCACTAGTCTATATTTAGATGGTGT 57.521 34.615 16.17 5.74 36.84 4.16
3804 4252 8.924303 TGCACTAGTCTATATTTAGATGGTGTT 58.076 33.333 16.17 0.00 36.84 3.32
3805 4253 9.413048 GCACTAGTCTATATTTAGATGGTGTTC 57.587 37.037 16.17 5.75 36.84 3.18
3806 4254 9.915629 CACTAGTCTATATTTAGATGGTGTTCC 57.084 37.037 0.00 0.00 36.84 3.62
3817 4265 2.461300 TGGTGTTCCATTCCCACAAA 57.539 45.000 0.00 0.00 39.03 2.83
3818 4266 2.035632 TGGTGTTCCATTCCCACAAAC 58.964 47.619 0.00 0.00 39.03 2.93
3819 4267 2.035632 GGTGTTCCATTCCCACAAACA 58.964 47.619 0.00 0.00 0.00 2.83
3820 4268 2.432510 GGTGTTCCATTCCCACAAACAA 59.567 45.455 0.00 0.00 32.17 2.83
3821 4269 3.118592 GGTGTTCCATTCCCACAAACAAA 60.119 43.478 0.00 0.00 32.17 2.83
3822 4270 4.444164 GGTGTTCCATTCCCACAAACAAAT 60.444 41.667 0.00 0.00 32.17 2.32
3823 4271 5.221541 GGTGTTCCATTCCCACAAACAAATA 60.222 40.000 0.00 0.00 32.17 1.40
3824 4272 5.925969 GTGTTCCATTCCCACAAACAAATAG 59.074 40.000 0.00 0.00 32.17 1.73
3825 4273 4.799564 TCCATTCCCACAAACAAATAGC 57.200 40.909 0.00 0.00 0.00 2.97
3826 4274 4.415596 TCCATTCCCACAAACAAATAGCT 58.584 39.130 0.00 0.00 0.00 3.32
3827 4275 5.575157 TCCATTCCCACAAACAAATAGCTA 58.425 37.500 0.00 0.00 0.00 3.32
3828 4276 5.652014 TCCATTCCCACAAACAAATAGCTAG 59.348 40.000 0.00 0.00 0.00 3.42
3829 4277 5.418840 CCATTCCCACAAACAAATAGCTAGT 59.581 40.000 0.00 0.00 0.00 2.57
3830 4278 6.071391 CCATTCCCACAAACAAATAGCTAGTT 60.071 38.462 0.00 0.00 0.00 2.24
3831 4279 6.969993 TTCCCACAAACAAATAGCTAGTTT 57.030 33.333 3.16 3.81 36.00 2.66
3832 4280 6.569179 TCCCACAAACAAATAGCTAGTTTC 57.431 37.500 3.16 0.00 33.54 2.78
3833 4281 6.303839 TCCCACAAACAAATAGCTAGTTTCT 58.696 36.000 3.16 0.00 33.54 2.52
3834 4282 6.430000 TCCCACAAACAAATAGCTAGTTTCTC 59.570 38.462 3.16 0.00 33.54 2.87
3835 4283 6.206634 CCCACAAACAAATAGCTAGTTTCTCA 59.793 38.462 3.16 0.00 33.54 3.27
3836 4284 7.078228 CCACAAACAAATAGCTAGTTTCTCAC 58.922 38.462 3.16 0.00 33.54 3.51
3837 4285 7.078228 CACAAACAAATAGCTAGTTTCTCACC 58.922 38.462 3.16 0.00 33.54 4.02
3838 4286 6.770785 ACAAACAAATAGCTAGTTTCTCACCA 59.229 34.615 3.16 0.00 33.54 4.17
3839 4287 7.448469 ACAAACAAATAGCTAGTTTCTCACCAT 59.552 33.333 3.16 0.00 33.54 3.55
3840 4288 6.992063 ACAAATAGCTAGTTTCTCACCATG 57.008 37.500 3.16 0.00 0.00 3.66
3841 4289 6.476378 ACAAATAGCTAGTTTCTCACCATGT 58.524 36.000 3.16 0.00 0.00 3.21
3842 4290 7.620880 ACAAATAGCTAGTTTCTCACCATGTA 58.379 34.615 3.16 0.00 0.00 2.29
3843 4291 8.100791 ACAAATAGCTAGTTTCTCACCATGTAA 58.899 33.333 3.16 0.00 0.00 2.41
3844 4292 9.113838 CAAATAGCTAGTTTCTCACCATGTAAT 57.886 33.333 3.16 0.00 0.00 1.89
3845 4293 8.668510 AATAGCTAGTTTCTCACCATGTAATG 57.331 34.615 0.00 0.00 46.21 1.90
3865 4313 9.442047 TGTAATGAAAATTGAAAACAACAACCT 57.558 25.926 0.00 0.00 0.00 3.50
3868 4316 9.665719 AATGAAAATTGAAAACAACAACCTAGT 57.334 25.926 0.00 0.00 0.00 2.57
3875 4323 7.995463 TGAAAACAACAACCTAGTAAATTGC 57.005 32.000 0.00 0.00 0.00 3.56
3876 4324 7.548097 TGAAAACAACAACCTAGTAAATTGCA 58.452 30.769 0.00 0.00 0.00 4.08
3877 4325 8.035394 TGAAAACAACAACCTAGTAAATTGCAA 58.965 29.630 0.00 0.00 0.00 4.08
3878 4326 8.419076 AAAACAACAACCTAGTAAATTGCAAG 57.581 30.769 4.94 0.00 0.00 4.01
3879 4327 6.952773 ACAACAACCTAGTAAATTGCAAGA 57.047 33.333 4.94 0.00 0.00 3.02
3880 4328 7.341445 ACAACAACCTAGTAAATTGCAAGAA 57.659 32.000 4.94 0.00 0.00 2.52
3881 4329 7.777095 ACAACAACCTAGTAAATTGCAAGAAA 58.223 30.769 4.94 0.00 0.00 2.52
3882 4330 8.254508 ACAACAACCTAGTAAATTGCAAGAAAA 58.745 29.630 4.94 0.00 0.00 2.29
3883 4331 9.092876 CAACAACCTAGTAAATTGCAAGAAAAA 57.907 29.630 4.94 0.00 0.00 1.94
3884 4332 8.871686 ACAACCTAGTAAATTGCAAGAAAAAG 57.128 30.769 4.94 0.00 0.00 2.27
3885 4333 8.691797 ACAACCTAGTAAATTGCAAGAAAAAGA 58.308 29.630 4.94 0.00 0.00 2.52
3886 4334 9.185192 CAACCTAGTAAATTGCAAGAAAAAGAG 57.815 33.333 4.94 0.00 0.00 2.85
3887 4335 8.465273 ACCTAGTAAATTGCAAGAAAAAGAGT 57.535 30.769 4.94 0.00 0.00 3.24
3888 4336 8.352942 ACCTAGTAAATTGCAAGAAAAAGAGTG 58.647 33.333 4.94 0.00 0.00 3.51
3889 4337 7.327032 CCTAGTAAATTGCAAGAAAAAGAGTGC 59.673 37.037 4.94 0.00 37.51 4.40
3890 4338 6.572519 AGTAAATTGCAAGAAAAAGAGTGCA 58.427 32.000 4.94 0.00 44.85 4.57
3894 4342 4.652421 TGCAAGAAAAAGAGTGCAATGA 57.348 36.364 0.00 0.00 43.65 2.57
3895 4343 4.613944 TGCAAGAAAAAGAGTGCAATGAG 58.386 39.130 0.00 0.00 43.65 2.90
3896 4344 3.985925 GCAAGAAAAAGAGTGCAATGAGG 59.014 43.478 0.00 0.00 36.97 3.86
3897 4345 4.553323 CAAGAAAAAGAGTGCAATGAGGG 58.447 43.478 0.00 0.00 0.00 4.30
3898 4346 3.837355 AGAAAAAGAGTGCAATGAGGGT 58.163 40.909 0.00 0.00 0.00 4.34
3899 4347 4.985538 AGAAAAAGAGTGCAATGAGGGTA 58.014 39.130 0.00 0.00 0.00 3.69
3900 4348 5.385198 AGAAAAAGAGTGCAATGAGGGTAA 58.615 37.500 0.00 0.00 0.00 2.85
3901 4349 5.833131 AGAAAAAGAGTGCAATGAGGGTAAA 59.167 36.000 0.00 0.00 0.00 2.01
3902 4350 5.712152 AAAAGAGTGCAATGAGGGTAAAG 57.288 39.130 0.00 0.00 0.00 1.85
3903 4351 4.640771 AAGAGTGCAATGAGGGTAAAGA 57.359 40.909 0.00 0.00 0.00 2.52
3904 4352 4.640771 AGAGTGCAATGAGGGTAAAGAA 57.359 40.909 0.00 0.00 0.00 2.52
3905 4353 4.583871 AGAGTGCAATGAGGGTAAAGAAG 58.416 43.478 0.00 0.00 0.00 2.85
3906 4354 4.287067 AGAGTGCAATGAGGGTAAAGAAGA 59.713 41.667 0.00 0.00 0.00 2.87
3907 4355 4.583871 AGTGCAATGAGGGTAAAGAAGAG 58.416 43.478 0.00 0.00 0.00 2.85
3908 4356 4.287067 AGTGCAATGAGGGTAAAGAAGAGA 59.713 41.667 0.00 0.00 0.00 3.10
3909 4357 5.003804 GTGCAATGAGGGTAAAGAAGAGAA 58.996 41.667 0.00 0.00 0.00 2.87
3910 4358 5.123027 GTGCAATGAGGGTAAAGAAGAGAAG 59.877 44.000 0.00 0.00 0.00 2.85
3911 4359 4.637977 GCAATGAGGGTAAAGAAGAGAAGG 59.362 45.833 0.00 0.00 0.00 3.46
3912 4360 5.189180 CAATGAGGGTAAAGAAGAGAAGGG 58.811 45.833 0.00 0.00 0.00 3.95
3913 4361 2.572104 TGAGGGTAAAGAAGAGAAGGGC 59.428 50.000 0.00 0.00 0.00 5.19
3914 4362 1.555533 AGGGTAAAGAAGAGAAGGGCG 59.444 52.381 0.00 0.00 0.00 6.13
3915 4363 1.553704 GGGTAAAGAAGAGAAGGGCGA 59.446 52.381 0.00 0.00 0.00 5.54
3916 4364 2.170817 GGGTAAAGAAGAGAAGGGCGAT 59.829 50.000 0.00 0.00 0.00 4.58
3917 4365 3.198872 GGTAAAGAAGAGAAGGGCGATG 58.801 50.000 0.00 0.00 0.00 3.84
3918 4366 3.369576 GGTAAAGAAGAGAAGGGCGATGT 60.370 47.826 0.00 0.00 0.00 3.06
3919 4367 2.393271 AAGAAGAGAAGGGCGATGTG 57.607 50.000 0.00 0.00 0.00 3.21
3920 4368 1.561643 AGAAGAGAAGGGCGATGTGA 58.438 50.000 0.00 0.00 0.00 3.58
3921 4369 2.114616 AGAAGAGAAGGGCGATGTGAT 58.885 47.619 0.00 0.00 0.00 3.06
3922 4370 2.102252 AGAAGAGAAGGGCGATGTGATC 59.898 50.000 0.00 0.00 0.00 2.92
3936 4384 5.126396 GATGTGATCGATGGTGACTATGA 57.874 43.478 0.54 0.00 0.00 2.15
3937 4385 5.532557 GATGTGATCGATGGTGACTATGAA 58.467 41.667 0.54 0.00 0.00 2.57
3938 4386 5.535753 TGTGATCGATGGTGACTATGAAT 57.464 39.130 0.54 0.00 0.00 2.57
3939 4387 5.291971 TGTGATCGATGGTGACTATGAATG 58.708 41.667 0.54 0.00 0.00 2.67
3940 4388 5.163416 TGTGATCGATGGTGACTATGAATGT 60.163 40.000 0.54 0.00 0.00 2.71
3941 4389 6.040391 TGTGATCGATGGTGACTATGAATGTA 59.960 38.462 0.54 0.00 0.00 2.29
3942 4390 6.923508 GTGATCGATGGTGACTATGAATGTAA 59.076 38.462 0.54 0.00 0.00 2.41
3943 4391 6.923508 TGATCGATGGTGACTATGAATGTAAC 59.076 38.462 0.54 0.00 0.00 2.50
3944 4392 5.278604 TCGATGGTGACTATGAATGTAACG 58.721 41.667 0.00 0.00 0.00 3.18
3945 4393 4.085055 CGATGGTGACTATGAATGTAACGC 60.085 45.833 0.00 0.00 0.00 4.84
3946 4394 4.195225 TGGTGACTATGAATGTAACGCA 57.805 40.909 0.00 0.00 0.00 5.24
3947 4395 4.765273 TGGTGACTATGAATGTAACGCAT 58.235 39.130 0.00 0.00 40.03 4.73
3948 4396 4.570369 TGGTGACTATGAATGTAACGCATG 59.430 41.667 0.00 0.00 37.96 4.06
3949 4397 4.024893 GGTGACTATGAATGTAACGCATGG 60.025 45.833 0.00 0.00 37.96 3.66
3950 4398 4.024893 GTGACTATGAATGTAACGCATGGG 60.025 45.833 8.44 8.44 37.96 4.00
3951 4399 3.476552 ACTATGAATGTAACGCATGGGG 58.523 45.455 14.94 0.00 37.96 4.96
3952 4400 2.727123 ATGAATGTAACGCATGGGGA 57.273 45.000 14.94 0.00 37.96 4.81
3953 4401 2.498644 TGAATGTAACGCATGGGGAA 57.501 45.000 14.94 0.00 37.96 3.97
3954 4402 3.011566 TGAATGTAACGCATGGGGAAT 57.988 42.857 14.94 2.67 37.96 3.01
3955 4403 3.360867 TGAATGTAACGCATGGGGAATT 58.639 40.909 14.94 7.77 37.96 2.17
3956 4404 3.766591 TGAATGTAACGCATGGGGAATTT 59.233 39.130 14.94 1.76 37.96 1.82
3957 4405 3.799281 ATGTAACGCATGGGGAATTTG 57.201 42.857 14.94 0.00 36.26 2.32
3958 4406 2.796557 TGTAACGCATGGGGAATTTGA 58.203 42.857 14.94 0.00 0.00 2.69
3959 4407 2.752354 TGTAACGCATGGGGAATTTGAG 59.248 45.455 14.94 0.00 0.00 3.02
3960 4408 2.214376 AACGCATGGGGAATTTGAGA 57.786 45.000 14.94 0.00 0.00 3.27
3961 4409 1.755179 ACGCATGGGGAATTTGAGAG 58.245 50.000 14.94 0.00 0.00 3.20
3962 4410 1.281867 ACGCATGGGGAATTTGAGAGA 59.718 47.619 14.94 0.00 0.00 3.10
3963 4411 1.672881 CGCATGGGGAATTTGAGAGAC 59.327 52.381 0.89 0.00 0.00 3.36
3964 4412 2.726821 GCATGGGGAATTTGAGAGACA 58.273 47.619 0.00 0.00 0.00 3.41
3965 4413 2.686915 GCATGGGGAATTTGAGAGACAG 59.313 50.000 0.00 0.00 0.00 3.51
3966 4414 3.623203 GCATGGGGAATTTGAGAGACAGA 60.623 47.826 0.00 0.00 0.00 3.41
3967 4415 3.988976 TGGGGAATTTGAGAGACAGAG 57.011 47.619 0.00 0.00 0.00 3.35
3968 4416 2.026822 TGGGGAATTTGAGAGACAGAGC 60.027 50.000 0.00 0.00 0.00 4.09
3969 4417 2.026822 GGGGAATTTGAGAGACAGAGCA 60.027 50.000 0.00 0.00 0.00 4.26
3970 4418 3.269178 GGGAATTTGAGAGACAGAGCAG 58.731 50.000 0.00 0.00 0.00 4.24
3971 4419 2.677337 GGAATTTGAGAGACAGAGCAGC 59.323 50.000 0.00 0.00 0.00 5.25
3972 4420 3.332919 GAATTTGAGAGACAGAGCAGCA 58.667 45.455 0.00 0.00 0.00 4.41
3973 4421 2.916702 TTTGAGAGACAGAGCAGCAA 57.083 45.000 0.00 0.00 0.00 3.91
3974 4422 3.413846 TTTGAGAGACAGAGCAGCAAT 57.586 42.857 0.00 0.00 0.00 3.56
3975 4423 2.381725 TGAGAGACAGAGCAGCAATG 57.618 50.000 0.00 0.00 0.00 2.82
3976 4424 1.008329 GAGAGACAGAGCAGCAATGC 58.992 55.000 0.00 0.00 0.00 3.56
3977 4425 0.323957 AGAGACAGAGCAGCAATGCA 59.676 50.000 8.35 0.00 37.25 3.96
3978 4426 0.727970 GAGACAGAGCAGCAATGCAG 59.272 55.000 8.35 0.00 37.25 4.41
3979 4427 0.677098 AGACAGAGCAGCAATGCAGG 60.677 55.000 8.35 0.00 37.25 4.85
3980 4428 2.267681 GACAGAGCAGCAATGCAGGC 62.268 60.000 8.35 11.01 37.25 4.85
3981 4429 2.035155 AGAGCAGCAATGCAGGCA 59.965 55.556 20.65 0.00 37.25 4.75
3982 4430 1.379977 AGAGCAGCAATGCAGGCAT 60.380 52.632 20.65 0.00 38.46 4.40
3983 4431 1.226974 GAGCAGCAATGCAGGCATG 60.227 57.895 20.65 5.93 36.68 4.06
3984 4432 1.663379 GAGCAGCAATGCAGGCATGA 61.663 55.000 20.65 0.00 36.68 3.07
3985 4433 1.043116 AGCAGCAATGCAGGCATGAT 61.043 50.000 20.65 0.73 36.68 2.45
3986 4434 0.597637 GCAGCAATGCAGGCATGATC 60.598 55.000 15.28 0.53 36.68 2.92
3987 4435 0.317854 CAGCAATGCAGGCATGATCG 60.318 55.000 8.35 0.00 36.68 3.69
3988 4436 0.750546 AGCAATGCAGGCATGATCGT 60.751 50.000 8.35 0.00 36.68 3.73
3989 4437 0.317603 GCAATGCAGGCATGATCGTC 60.318 55.000 7.64 0.00 36.68 4.20
3990 4438 0.041576 CAATGCAGGCATGATCGTCG 60.042 55.000 7.64 0.00 36.68 5.12
3991 4439 0.179076 AATGCAGGCATGATCGTCGA 60.179 50.000 7.64 0.00 36.68 4.20
3992 4440 0.877649 ATGCAGGCATGATCGTCGAC 60.878 55.000 0.62 5.18 35.03 4.20
3993 4441 1.227089 GCAGGCATGATCGTCGACT 60.227 57.895 14.70 0.00 0.00 4.18
3994 4442 0.807667 GCAGGCATGATCGTCGACTT 60.808 55.000 14.70 0.13 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 1.614903 CATCACTGGCCACAACAACAT 59.385 47.619 0.00 0.00 0.00 2.71
64 66 3.966218 CGTCACGTCCAACAAATTTTCTC 59.034 43.478 0.00 0.00 0.00 2.87
65 67 3.242936 CCGTCACGTCCAACAAATTTTCT 60.243 43.478 0.00 0.00 0.00 2.52
66 68 3.040099 CCGTCACGTCCAACAAATTTTC 58.960 45.455 0.00 0.00 0.00 2.29
68 70 2.018515 ACCGTCACGTCCAACAAATTT 58.981 42.857 0.00 0.00 0.00 1.82
69 71 1.332375 CACCGTCACGTCCAACAAATT 59.668 47.619 0.00 0.00 0.00 1.82
70 72 0.941542 CACCGTCACGTCCAACAAAT 59.058 50.000 0.00 0.00 0.00 2.32
72 74 0.806884 GTCACCGTCACGTCCAACAA 60.807 55.000 0.00 0.00 0.00 2.83
73 75 1.227031 GTCACCGTCACGTCCAACA 60.227 57.895 0.00 0.00 0.00 3.33
75 77 2.079020 GAGGTCACCGTCACGTCCAA 62.079 60.000 0.00 0.00 0.00 3.53
76 78 2.520020 AGGTCACCGTCACGTCCA 60.520 61.111 0.00 0.00 0.00 4.02
77 79 2.257676 GAGGTCACCGTCACGTCC 59.742 66.667 0.00 0.00 0.00 4.79
78 80 2.126965 CGAGGTCACCGTCACGTC 60.127 66.667 0.00 0.00 0.00 4.34
79 81 4.338539 GCGAGGTCACCGTCACGT 62.339 66.667 0.00 0.00 0.00 4.49
87 89 4.681978 ACAAGGCGGCGAGGTCAC 62.682 66.667 12.98 0.00 0.00 3.67
88 90 2.951475 AAAACAAGGCGGCGAGGTCA 62.951 55.000 12.98 0.00 0.00 4.02
90 92 2.203294 AAAACAAGGCGGCGAGGT 60.203 55.556 12.98 0.00 0.00 3.85
92 94 1.497722 GAGAAAACAAGGCGGCGAG 59.502 57.895 12.98 2.27 0.00 5.03
93 95 1.964373 GGAGAAAACAAGGCGGCGA 60.964 57.895 12.98 0.00 0.00 5.54
94 96 2.258013 TGGAGAAAACAAGGCGGCG 61.258 57.895 0.51 0.51 0.00 6.46
95 97 1.285950 GTGGAGAAAACAAGGCGGC 59.714 57.895 0.00 0.00 0.00 6.53
96 98 1.574428 CGTGGAGAAAACAAGGCGG 59.426 57.895 0.00 0.00 0.00 6.13
152 154 1.007387 GCCGAGCAACCAAACAAGG 60.007 57.895 0.00 0.00 0.00 3.61
182 184 3.028850 CAGGGAGGTCGATTAGTGGTTA 58.971 50.000 0.00 0.00 0.00 2.85
237 239 6.917477 TGCTTTTTCTTGCACATTACACTTAG 59.083 34.615 0.00 0.00 33.94 2.18
238 240 6.800543 TGCTTTTTCTTGCACATTACACTTA 58.199 32.000 0.00 0.00 33.94 2.24
240 242 5.067674 TCTGCTTTTTCTTGCACATTACACT 59.932 36.000 0.00 0.00 35.20 3.55
241 243 5.280945 TCTGCTTTTTCTTGCACATTACAC 58.719 37.500 0.00 0.00 35.20 2.90
242 244 5.512753 TCTGCTTTTTCTTGCACATTACA 57.487 34.783 0.00 0.00 35.20 2.41
243 245 6.826893 TTTCTGCTTTTTCTTGCACATTAC 57.173 33.333 0.00 0.00 35.20 1.89
326 328 4.904590 CACCACCCGGCCAAACCA 62.905 66.667 2.24 0.00 39.03 3.67
335 337 2.757980 CTAACCCCCAACACCACCCG 62.758 65.000 0.00 0.00 0.00 5.28
442 450 3.474806 CACAACGGTGGCGATCTC 58.525 61.111 4.97 0.00 41.45 2.75
527 553 6.924060 TGTCTCTGCTTCTGTAAAGTTTACTC 59.076 38.462 22.87 10.03 0.00 2.59
534 560 2.410053 GCGTGTCTCTGCTTCTGTAAAG 59.590 50.000 0.00 0.00 0.00 1.85
537 563 0.958822 TGCGTGTCTCTGCTTCTGTA 59.041 50.000 0.00 0.00 0.00 2.74
538 564 0.598680 GTGCGTGTCTCTGCTTCTGT 60.599 55.000 0.00 0.00 0.00 3.41
539 565 1.612469 CGTGCGTGTCTCTGCTTCTG 61.612 60.000 0.00 0.00 0.00 3.02
541 567 3.004734 GCGTGCGTGTCTCTGCTTC 62.005 63.158 0.00 0.00 0.00 3.86
543 569 4.284860 TGCGTGCGTGTCTCTGCT 62.285 61.111 0.00 0.00 0.00 4.24
544 570 4.064491 GTGCGTGCGTGTCTCTGC 62.064 66.667 0.00 0.00 0.00 4.26
545 571 2.237066 TTGTGCGTGCGTGTCTCTG 61.237 57.895 0.00 0.00 0.00 3.35
546 572 2.106131 TTGTGCGTGCGTGTCTCT 59.894 55.556 0.00 0.00 0.00 3.10
547 573 2.031044 TTGTTGTGCGTGCGTGTCTC 62.031 55.000 0.00 0.00 0.00 3.36
548 574 1.640210 TTTGTTGTGCGTGCGTGTCT 61.640 50.000 0.00 0.00 0.00 3.41
549 575 1.226156 TTTGTTGTGCGTGCGTGTC 60.226 52.632 0.00 0.00 0.00 3.67
550 576 1.513160 GTTTGTTGTGCGTGCGTGT 60.513 52.632 0.00 0.00 0.00 4.49
551 577 1.512947 TGTTTGTTGTGCGTGCGTG 60.513 52.632 0.00 0.00 0.00 5.34
552 578 1.513160 GTGTTTGTTGTGCGTGCGT 60.513 52.632 0.00 0.00 0.00 5.24
553 579 2.554947 CGTGTTTGTTGTGCGTGCG 61.555 57.895 0.00 0.00 0.00 5.34
564 590 2.728383 GCTGCTGCTGCGTGTTTG 60.728 61.111 15.65 0.00 43.34 2.93
651 680 1.058590 CAGCACACTACGACGACGAC 61.059 60.000 15.32 0.00 42.66 4.34
670 702 2.781300 GCTGTCGCTGCTAGTTGC 59.219 61.111 0.00 0.00 43.25 4.17
740 772 3.555168 CCCTCTAACTCGATGTATTGGCC 60.555 52.174 0.00 0.00 0.00 5.36
873 905 4.619227 AGACCCAACCACACGCGG 62.619 66.667 12.47 1.27 0.00 6.46
877 909 1.528309 CACCCAGACCCAACCACAC 60.528 63.158 0.00 0.00 0.00 3.82
879 911 1.528309 CACACCCAGACCCAACCAC 60.528 63.158 0.00 0.00 0.00 4.16
968 1006 3.694058 AAGATGGGAGCAGCCGCAG 62.694 63.158 0.00 0.00 42.27 5.18
1008 1060 3.422796 GAGCGTGGATATAAGGAGGAGA 58.577 50.000 0.00 0.00 0.00 3.71
1185 1237 2.047655 TTCGACGGCGGCATTCTT 60.048 55.556 15.54 0.00 38.28 2.52
1530 1588 2.356793 CGGCCGATCCATGAGAGC 60.357 66.667 24.07 0.00 34.01 4.09
1531 1589 2.356793 GCGGCCGATCCATGAGAG 60.357 66.667 33.48 0.00 34.01 3.20
1691 1752 4.143986 AGAGCTGGGTAAGAATAACTGC 57.856 45.455 0.00 0.00 0.00 4.40
1700 1761 9.010029 TCAAACTTTAATTTAGAGCTGGGTAAG 57.990 33.333 0.00 0.00 0.00 2.34
1788 1851 2.923020 CGCCATTAAACAATGACAAGCC 59.077 45.455 0.00 0.00 31.98 4.35
1813 1876 4.024048 CGTCCTGCTAAACACAACAGATTT 60.024 41.667 0.00 0.00 31.67 2.17
1917 1980 1.045407 GTGGTGAGTGGTGAGTGGTA 58.955 55.000 0.00 0.00 0.00 3.25
1918 1981 0.691078 AGTGGTGAGTGGTGAGTGGT 60.691 55.000 0.00 0.00 0.00 4.16
1919 1982 0.034059 GAGTGGTGAGTGGTGAGTGG 59.966 60.000 0.00 0.00 0.00 4.00
1920 1983 0.752658 TGAGTGGTGAGTGGTGAGTG 59.247 55.000 0.00 0.00 0.00 3.51
1921 1984 1.620819 GATGAGTGGTGAGTGGTGAGT 59.379 52.381 0.00 0.00 0.00 3.41
1922 1985 1.620323 TGATGAGTGGTGAGTGGTGAG 59.380 52.381 0.00 0.00 0.00 3.51
1923 1986 1.344438 GTGATGAGTGGTGAGTGGTGA 59.656 52.381 0.00 0.00 0.00 4.02
1924 1987 1.345741 AGTGATGAGTGGTGAGTGGTG 59.654 52.381 0.00 0.00 0.00 4.17
1925 1988 1.620819 GAGTGATGAGTGGTGAGTGGT 59.379 52.381 0.00 0.00 0.00 4.16
1926 1989 1.620323 TGAGTGATGAGTGGTGAGTGG 59.380 52.381 0.00 0.00 0.00 4.00
1927 1990 3.062763 GTTGAGTGATGAGTGGTGAGTG 58.937 50.000 0.00 0.00 0.00 3.51
1928 1991 2.968574 AGTTGAGTGATGAGTGGTGAGT 59.031 45.455 0.00 0.00 0.00 3.41
1929 1992 3.674528 AGTTGAGTGATGAGTGGTGAG 57.325 47.619 0.00 0.00 0.00 3.51
1930 1993 3.387699 TGAAGTTGAGTGATGAGTGGTGA 59.612 43.478 0.00 0.00 0.00 4.02
1931 1994 3.496130 GTGAAGTTGAGTGATGAGTGGTG 59.504 47.826 0.00 0.00 0.00 4.17
1932 1995 3.495100 GGTGAAGTTGAGTGATGAGTGGT 60.495 47.826 0.00 0.00 0.00 4.16
1933 1996 3.070018 GGTGAAGTTGAGTGATGAGTGG 58.930 50.000 0.00 0.00 0.00 4.00
1940 2010 0.249868 CGGCAGGTGAAGTTGAGTGA 60.250 55.000 0.00 0.00 0.00 3.41
1946 2016 0.763035 AGGTAACGGCAGGTGAAGTT 59.237 50.000 0.00 0.00 46.39 2.66
1992 2062 5.183713 CAGCTTATGAACCAGTCAATTCCAA 59.816 40.000 0.00 0.00 40.50 3.53
2049 2125 2.415357 CGCCTTCACGCATTAAAACCAT 60.415 45.455 0.00 0.00 0.00 3.55
2052 2128 2.604969 TCGCCTTCACGCATTAAAAC 57.395 45.000 0.00 0.00 0.00 2.43
2053 2129 2.744741 TGATCGCCTTCACGCATTAAAA 59.255 40.909 0.00 0.00 0.00 1.52
2074 2156 5.776716 CCATAACCAAAATATCCCATGCTCT 59.223 40.000 0.00 0.00 0.00 4.09
2094 2177 6.017192 CACATCAGCATCGGATTAAAACCATA 60.017 38.462 0.00 0.00 0.00 2.74
2095 2178 4.889409 ACATCAGCATCGGATTAAAACCAT 59.111 37.500 0.00 0.00 0.00 3.55
2098 2181 5.235305 ACACATCAGCATCGGATTAAAAC 57.765 39.130 0.00 0.00 0.00 2.43
2102 2185 3.622612 CACAACACATCAGCATCGGATTA 59.377 43.478 0.00 0.00 0.00 1.75
2106 2189 1.441738 TCACAACACATCAGCATCGG 58.558 50.000 0.00 0.00 0.00 4.18
2107 2190 3.752412 ATTCACAACACATCAGCATCG 57.248 42.857 0.00 0.00 0.00 3.84
2109 2192 4.763279 TCAGAATTCACAACACATCAGCAT 59.237 37.500 8.44 0.00 0.00 3.79
2118 2201 4.385825 GGTACCTGTCAGAATTCACAACA 58.614 43.478 8.44 7.68 0.00 3.33
2320 2403 5.578005 ATTCTGCAGGAACAAGAATCATG 57.422 39.130 15.13 0.00 36.70 3.07
2330 2417 2.464459 CGGCCGATTCTGCAGGAAC 61.464 63.158 24.07 2.29 36.70 3.62
2354 2457 2.545526 CTGCACCGATAGAATTTCGCAT 59.454 45.455 0.00 0.00 35.31 4.73
2373 2476 1.594194 TTACCAAATGCCAGGCGCTG 61.594 55.000 7.64 3.34 38.78 5.18
2620 2761 2.618241 CAAGATCACGGGAGAGAGAGAG 59.382 54.545 0.00 0.00 31.69 3.20
2621 2762 2.025793 ACAAGATCACGGGAGAGAGAGA 60.026 50.000 0.00 0.00 31.69 3.10
2663 2806 4.802424 CAGGCTCTAGACTGTGCG 57.198 61.111 4.56 0.00 45.99 5.34
2691 2837 2.522836 AGGCACGAGAATAGATGCTG 57.477 50.000 0.00 0.00 38.18 4.41
2733 2879 4.393062 ACAATGACAGAAGAATAAGTGGCG 59.607 41.667 0.00 0.00 0.00 5.69
2762 2912 6.414408 ACAAAATTCAGATAAGAGAGCACG 57.586 37.500 0.00 0.00 0.00 5.34
2767 2919 7.004086 ACACCCAACAAAATTCAGATAAGAGA 58.996 34.615 0.00 0.00 0.00 3.10
3007 3163 3.730761 CTGCACAACTGAGCGGCC 61.731 66.667 0.00 0.00 34.29 6.13
3015 3174 4.582656 TGGTAAATAAACAGCTGCACAACT 59.417 37.500 15.27 0.00 0.00 3.16
3021 3180 3.506067 ACCACTGGTAAATAAACAGCTGC 59.494 43.478 15.27 0.00 35.70 5.25
3028 3187 2.028294 TCCGCGACCACTGGTAAATAAA 60.028 45.455 8.23 0.00 35.25 1.40
3029 3188 1.549620 TCCGCGACCACTGGTAAATAA 59.450 47.619 8.23 0.00 35.25 1.40
3030 3189 1.135527 CTCCGCGACCACTGGTAAATA 59.864 52.381 8.23 0.00 35.25 1.40
3031 3190 0.108329 CTCCGCGACCACTGGTAAAT 60.108 55.000 8.23 0.00 35.25 1.40
3032 3191 1.290955 CTCCGCGACCACTGGTAAA 59.709 57.895 8.23 0.00 35.25 2.01
3166 3329 1.480137 GCCTCTCTCTGCTGCTAGAAA 59.520 52.381 0.00 0.00 0.00 2.52
3267 3431 7.393234 CCAGGTAACATTCCAGAAATCTACAAA 59.607 37.037 0.00 0.00 41.41 2.83
3285 3449 4.694037 GGGCATCGATTTATACCAGGTAAC 59.306 45.833 2.53 0.00 0.00 2.50
3306 3541 4.148838 TGACTGGGAAAAATACAACTGGG 58.851 43.478 0.00 0.00 0.00 4.45
3343 3581 2.030185 CCGCGCAACTGGATATACTACT 60.030 50.000 8.75 0.00 0.00 2.57
3344 3582 2.325761 CCGCGCAACTGGATATACTAC 58.674 52.381 8.75 0.00 0.00 2.73
3345 3583 1.336517 GCCGCGCAACTGGATATACTA 60.337 52.381 8.75 0.00 0.00 1.82
3346 3584 0.600255 GCCGCGCAACTGGATATACT 60.600 55.000 8.75 0.00 0.00 2.12
3347 3585 0.600255 AGCCGCGCAACTGGATATAC 60.600 55.000 8.75 0.00 0.00 1.47
3452 3775 5.763698 CGGATAGAGGATACACTTGTACTCA 59.236 44.000 8.80 0.00 38.87 3.41
3482 3811 6.016276 ACTCATGTCCAAATGTTTACTGTTCC 60.016 38.462 0.00 0.00 0.00 3.62
3485 3814 7.665559 ACATACTCATGTCCAAATGTTTACTGT 59.334 33.333 0.00 0.00 41.75 3.55
3487 3816 9.162764 GTACATACTCATGTCCAAATGTTTACT 57.837 33.333 0.00 0.00 44.42 2.24
3489 3818 8.325787 AGGTACATACTCATGTCCAAATGTTTA 58.674 33.333 0.00 0.00 44.42 2.01
3490 3819 7.121168 CAGGTACATACTCATGTCCAAATGTTT 59.879 37.037 0.00 0.00 44.42 2.83
3491 3820 6.599244 CAGGTACATACTCATGTCCAAATGTT 59.401 38.462 0.00 0.00 44.42 2.71
3492 3821 6.070251 TCAGGTACATACTCATGTCCAAATGT 60.070 38.462 0.00 0.49 44.42 2.71
3493 3822 6.258727 GTCAGGTACATACTCATGTCCAAATG 59.741 42.308 0.00 0.00 44.42 2.32
3495 3824 5.483937 AGTCAGGTACATACTCATGTCCAAA 59.516 40.000 0.00 0.00 44.42 3.28
3497 3826 4.402474 CAGTCAGGTACATACTCATGTCCA 59.598 45.833 0.00 0.00 44.42 4.02
3498 3827 4.645136 TCAGTCAGGTACATACTCATGTCC 59.355 45.833 0.00 0.00 44.42 4.02
3499 3828 5.836821 TCAGTCAGGTACATACTCATGTC 57.163 43.478 0.00 0.00 44.42 3.06
3501 3830 8.498054 AAAAATCAGTCAGGTACATACTCATG 57.502 34.615 0.00 0.00 38.21 3.07
3543 3991 2.409378 CCGAAAATGACTTTGCATGTGC 59.591 45.455 0.00 0.00 42.50 4.57
3546 3994 1.994779 GCCCGAAAATGACTTTGCATG 59.005 47.619 0.00 0.00 0.00 4.06
3554 4002 2.042520 TATGCGCGCCCGAAAATGAC 62.043 55.000 30.77 0.00 36.29 3.06
3563 4011 1.945662 CATTTGCTTATGCGCGCCC 60.946 57.895 30.77 12.03 43.34 6.13
3584 4032 4.020218 CCGATATCCAATTTGGCTCTAGGA 60.020 45.833 10.76 0.00 37.47 2.94
3594 4042 9.574516 AAACTTATAGAAGCCGATATCCAATTT 57.425 29.630 0.00 0.00 35.97 1.82
3606 4054 8.331730 TGTAGAAACCAAAACTTATAGAAGCC 57.668 34.615 0.00 0.00 35.97 4.35
3619 4067 3.244981 ACCCGGCTATTGTAGAAACCAAA 60.245 43.478 0.00 0.00 0.00 3.28
3622 4070 2.704464 ACCCGGCTATTGTAGAAACC 57.296 50.000 0.00 0.00 0.00 3.27
3624 4072 3.825143 GGTACCCGGCTATTGTAGAAA 57.175 47.619 0.00 0.00 0.00 2.52
3636 4084 9.644119 GTACGTGTGTATAATATGGGTACCCGG 62.644 48.148 26.07 0.00 39.80 5.73
3638 4086 6.015519 TGTACGTGTGTATAATATGGGTACCC 60.016 42.308 25.27 25.27 39.80 3.69
3658 4106 6.456988 GGCAGGACTTATTCTCAAAATGTACG 60.457 42.308 0.00 0.00 0.00 3.67
3663 4111 5.819991 TCTGGCAGGACTTATTCTCAAAAT 58.180 37.500 15.73 0.00 0.00 1.82
3675 4123 5.499004 TTATTTACTGTTCTGGCAGGACT 57.501 39.130 25.63 10.05 40.59 3.85
3680 4128 8.347004 TGATTTGATTATTTACTGTTCTGGCA 57.653 30.769 0.00 0.00 0.00 4.92
3704 4152 0.877071 CCAACCAGCTGCTACAGTTG 59.123 55.000 22.48 22.48 41.29 3.16
3708 4156 0.472044 TTCACCAACCAGCTGCTACA 59.528 50.000 8.66 0.00 0.00 2.74
3712 4160 1.181098 ACCATTCACCAACCAGCTGC 61.181 55.000 8.66 0.00 0.00 5.25
3723 4171 3.937814 TCACTACCACATCACCATTCAC 58.062 45.455 0.00 0.00 0.00 3.18
3763 4211 7.221450 AGACTAGTGCAACATACAAAACCTAA 58.779 34.615 0.00 0.00 41.43 2.69
3766 4214 5.941948 AGACTAGTGCAACATACAAAACC 57.058 39.130 0.00 0.00 41.43 3.27
3802 4250 4.929211 GCTATTTGTTTGTGGGAATGGAAC 59.071 41.667 0.00 0.00 0.00 3.62
3803 4251 4.837860 AGCTATTTGTTTGTGGGAATGGAA 59.162 37.500 0.00 0.00 0.00 3.53
3804 4252 4.415596 AGCTATTTGTTTGTGGGAATGGA 58.584 39.130 0.00 0.00 0.00 3.41
3805 4253 4.806640 AGCTATTTGTTTGTGGGAATGG 57.193 40.909 0.00 0.00 0.00 3.16
3806 4254 6.515272 ACTAGCTATTTGTTTGTGGGAATG 57.485 37.500 0.00 0.00 0.00 2.67
3807 4255 7.451566 AGAAACTAGCTATTTGTTTGTGGGAAT 59.548 33.333 12.76 0.00 35.37 3.01
3808 4256 6.775629 AGAAACTAGCTATTTGTTTGTGGGAA 59.224 34.615 12.76 0.00 35.37 3.97
3809 4257 6.303839 AGAAACTAGCTATTTGTTTGTGGGA 58.696 36.000 12.76 0.00 35.37 4.37
3810 4258 6.206634 TGAGAAACTAGCTATTTGTTTGTGGG 59.793 38.462 12.76 0.00 35.37 4.61
3811 4259 7.078228 GTGAGAAACTAGCTATTTGTTTGTGG 58.922 38.462 12.76 0.00 35.37 4.17
3812 4260 7.078228 GGTGAGAAACTAGCTATTTGTTTGTG 58.922 38.462 12.76 0.00 35.37 3.33
3813 4261 6.770785 TGGTGAGAAACTAGCTATTTGTTTGT 59.229 34.615 12.76 9.59 35.37 2.83
3814 4262 7.202016 TGGTGAGAAACTAGCTATTTGTTTG 57.798 36.000 12.76 0.00 35.37 2.93
3815 4263 7.448469 ACATGGTGAGAAACTAGCTATTTGTTT 59.552 33.333 8.81 8.81 37.42 2.83
3816 4264 6.942576 ACATGGTGAGAAACTAGCTATTTGTT 59.057 34.615 0.00 0.00 0.00 2.83
3817 4265 6.476378 ACATGGTGAGAAACTAGCTATTTGT 58.524 36.000 0.00 0.00 0.00 2.83
3818 4266 6.992063 ACATGGTGAGAAACTAGCTATTTG 57.008 37.500 0.00 0.00 0.00 2.32
3819 4267 9.113838 CATTACATGGTGAGAAACTAGCTATTT 57.886 33.333 0.00 0.00 0.00 1.40
3820 4268 8.486210 TCATTACATGGTGAGAAACTAGCTATT 58.514 33.333 0.00 0.00 0.00 1.73
3821 4269 8.023021 TCATTACATGGTGAGAAACTAGCTAT 57.977 34.615 0.00 0.00 0.00 2.97
3822 4270 7.418337 TCATTACATGGTGAGAAACTAGCTA 57.582 36.000 0.00 0.00 0.00 3.32
3823 4271 6.299805 TCATTACATGGTGAGAAACTAGCT 57.700 37.500 0.00 0.00 0.00 3.32
3824 4272 6.985188 TTCATTACATGGTGAGAAACTAGC 57.015 37.500 0.00 0.00 0.00 3.42
3827 4275 8.859090 TCAATTTTCATTACATGGTGAGAAACT 58.141 29.630 0.00 0.00 0.00 2.66
3828 4276 9.474920 TTCAATTTTCATTACATGGTGAGAAAC 57.525 29.630 0.00 0.00 0.00 2.78
3831 4279 9.474920 GTTTTCAATTTTCATTACATGGTGAGA 57.525 29.630 0.00 0.00 0.00 3.27
3832 4280 9.258826 TGTTTTCAATTTTCATTACATGGTGAG 57.741 29.630 0.00 0.00 0.00 3.51
3833 4281 9.605275 TTGTTTTCAATTTTCATTACATGGTGA 57.395 25.926 0.00 0.00 34.60 4.02
3834 4282 9.649024 GTTGTTTTCAATTTTCATTACATGGTG 57.351 29.630 0.00 0.00 42.08 4.17
3835 4283 9.388506 TGTTGTTTTCAATTTTCATTACATGGT 57.611 25.926 0.00 0.00 42.08 3.55
3839 4287 9.442047 AGGTTGTTGTTTTCAATTTTCATTACA 57.558 25.926 0.00 0.00 42.08 2.41
3842 4290 9.665719 ACTAGGTTGTTGTTTTCAATTTTCATT 57.334 25.926 0.00 0.00 42.08 2.57
3849 4297 9.040939 GCAATTTACTAGGTTGTTGTTTTCAAT 57.959 29.630 0.00 0.00 42.08 2.57
3850 4298 8.035394 TGCAATTTACTAGGTTGTTGTTTTCAA 58.965 29.630 0.00 0.00 37.48 2.69
3851 4299 7.548097 TGCAATTTACTAGGTTGTTGTTTTCA 58.452 30.769 0.00 0.00 0.00 2.69
3852 4300 7.995463 TGCAATTTACTAGGTTGTTGTTTTC 57.005 32.000 0.00 0.00 0.00 2.29
3853 4301 8.254508 TCTTGCAATTTACTAGGTTGTTGTTTT 58.745 29.630 0.00 0.00 0.00 2.43
3854 4302 7.777095 TCTTGCAATTTACTAGGTTGTTGTTT 58.223 30.769 0.00 0.00 0.00 2.83
3855 4303 7.341445 TCTTGCAATTTACTAGGTTGTTGTT 57.659 32.000 0.00 0.00 0.00 2.83
3856 4304 6.952773 TCTTGCAATTTACTAGGTTGTTGT 57.047 33.333 0.00 0.00 0.00 3.32
3857 4305 8.641499 TTTTCTTGCAATTTACTAGGTTGTTG 57.359 30.769 0.00 0.00 0.00 3.33
3858 4306 9.313118 CTTTTTCTTGCAATTTACTAGGTTGTT 57.687 29.630 0.00 0.00 0.00 2.83
3859 4307 8.691797 TCTTTTTCTTGCAATTTACTAGGTTGT 58.308 29.630 0.00 0.00 0.00 3.32
3860 4308 9.185192 CTCTTTTTCTTGCAATTTACTAGGTTG 57.815 33.333 0.00 0.00 0.00 3.77
3861 4309 8.914011 ACTCTTTTTCTTGCAATTTACTAGGTT 58.086 29.630 0.00 0.00 0.00 3.50
3862 4310 8.352942 CACTCTTTTTCTTGCAATTTACTAGGT 58.647 33.333 0.00 0.00 0.00 3.08
3863 4311 7.327032 GCACTCTTTTTCTTGCAATTTACTAGG 59.673 37.037 0.00 0.00 34.97 3.02
3864 4312 7.862372 TGCACTCTTTTTCTTGCAATTTACTAG 59.138 33.333 0.00 0.00 41.90 2.57
3865 4313 7.711846 TGCACTCTTTTTCTTGCAATTTACTA 58.288 30.769 0.00 0.00 41.90 1.82
3866 4314 6.572519 TGCACTCTTTTTCTTGCAATTTACT 58.427 32.000 0.00 0.00 41.90 2.24
3867 4315 6.826893 TGCACTCTTTTTCTTGCAATTTAC 57.173 33.333 0.00 0.00 41.90 2.01
3873 4321 4.500205 CCTCATTGCACTCTTTTTCTTGCA 60.500 41.667 0.00 0.00 43.11 4.08
3874 4322 3.985925 CCTCATTGCACTCTTTTTCTTGC 59.014 43.478 0.00 0.00 35.45 4.01
3875 4323 4.038402 ACCCTCATTGCACTCTTTTTCTTG 59.962 41.667 0.00 0.00 0.00 3.02
3876 4324 4.218312 ACCCTCATTGCACTCTTTTTCTT 58.782 39.130 0.00 0.00 0.00 2.52
3877 4325 3.837355 ACCCTCATTGCACTCTTTTTCT 58.163 40.909 0.00 0.00 0.00 2.52
3878 4326 5.705609 TTACCCTCATTGCACTCTTTTTC 57.294 39.130 0.00 0.00 0.00 2.29
3879 4327 5.833131 TCTTTACCCTCATTGCACTCTTTTT 59.167 36.000 0.00 0.00 0.00 1.94
3880 4328 5.385198 TCTTTACCCTCATTGCACTCTTTT 58.615 37.500 0.00 0.00 0.00 2.27
3881 4329 4.985538 TCTTTACCCTCATTGCACTCTTT 58.014 39.130 0.00 0.00 0.00 2.52
3882 4330 4.640771 TCTTTACCCTCATTGCACTCTT 57.359 40.909 0.00 0.00 0.00 2.85
3883 4331 4.287067 TCTTCTTTACCCTCATTGCACTCT 59.713 41.667 0.00 0.00 0.00 3.24
3884 4332 4.579869 TCTTCTTTACCCTCATTGCACTC 58.420 43.478 0.00 0.00 0.00 3.51
3885 4333 4.287067 TCTCTTCTTTACCCTCATTGCACT 59.713 41.667 0.00 0.00 0.00 4.40
3886 4334 4.579869 TCTCTTCTTTACCCTCATTGCAC 58.420 43.478 0.00 0.00 0.00 4.57
3887 4335 4.908601 TCTCTTCTTTACCCTCATTGCA 57.091 40.909 0.00 0.00 0.00 4.08
3888 4336 4.637977 CCTTCTCTTCTTTACCCTCATTGC 59.362 45.833 0.00 0.00 0.00 3.56
3889 4337 5.189180 CCCTTCTCTTCTTTACCCTCATTG 58.811 45.833 0.00 0.00 0.00 2.82
3890 4338 4.324641 GCCCTTCTCTTCTTTACCCTCATT 60.325 45.833 0.00 0.00 0.00 2.57
3891 4339 3.201045 GCCCTTCTCTTCTTTACCCTCAT 59.799 47.826 0.00 0.00 0.00 2.90
3892 4340 2.572104 GCCCTTCTCTTCTTTACCCTCA 59.428 50.000 0.00 0.00 0.00 3.86
3893 4341 2.418884 CGCCCTTCTCTTCTTTACCCTC 60.419 54.545 0.00 0.00 0.00 4.30
3894 4342 1.555533 CGCCCTTCTCTTCTTTACCCT 59.444 52.381 0.00 0.00 0.00 4.34
3895 4343 1.553704 TCGCCCTTCTCTTCTTTACCC 59.446 52.381 0.00 0.00 0.00 3.69
3896 4344 3.198872 CATCGCCCTTCTCTTCTTTACC 58.801 50.000 0.00 0.00 0.00 2.85
3897 4345 3.619038 CACATCGCCCTTCTCTTCTTTAC 59.381 47.826 0.00 0.00 0.00 2.01
3898 4346 3.513912 TCACATCGCCCTTCTCTTCTTTA 59.486 43.478 0.00 0.00 0.00 1.85
3899 4347 2.303022 TCACATCGCCCTTCTCTTCTTT 59.697 45.455 0.00 0.00 0.00 2.52
3900 4348 1.902508 TCACATCGCCCTTCTCTTCTT 59.097 47.619 0.00 0.00 0.00 2.52
3901 4349 1.561643 TCACATCGCCCTTCTCTTCT 58.438 50.000 0.00 0.00 0.00 2.85
3902 4350 2.478831 GATCACATCGCCCTTCTCTTC 58.521 52.381 0.00 0.00 0.00 2.87
3903 4351 1.202463 CGATCACATCGCCCTTCTCTT 60.202 52.381 0.00 0.00 46.55 2.85
3904 4352 0.387202 CGATCACATCGCCCTTCTCT 59.613 55.000 0.00 0.00 46.55 3.10
3905 4353 2.892305 CGATCACATCGCCCTTCTC 58.108 57.895 0.00 0.00 46.55 2.87
3914 4362 5.126396 TCATAGTCACCATCGATCACATC 57.874 43.478 0.00 0.00 0.00 3.06
3915 4363 5.535753 TTCATAGTCACCATCGATCACAT 57.464 39.130 0.00 0.00 0.00 3.21
3916 4364 5.163416 ACATTCATAGTCACCATCGATCACA 60.163 40.000 0.00 0.00 0.00 3.58
3917 4365 5.292765 ACATTCATAGTCACCATCGATCAC 58.707 41.667 0.00 0.00 0.00 3.06
3918 4366 5.535753 ACATTCATAGTCACCATCGATCA 57.464 39.130 0.00 0.00 0.00 2.92
3919 4367 6.088217 CGTTACATTCATAGTCACCATCGATC 59.912 42.308 0.00 0.00 0.00 3.69
3920 4368 5.920840 CGTTACATTCATAGTCACCATCGAT 59.079 40.000 0.00 0.00 0.00 3.59
3921 4369 5.278604 CGTTACATTCATAGTCACCATCGA 58.721 41.667 0.00 0.00 0.00 3.59
3922 4370 4.085055 GCGTTACATTCATAGTCACCATCG 60.085 45.833 0.00 0.00 0.00 3.84
3923 4371 4.808895 TGCGTTACATTCATAGTCACCATC 59.191 41.667 0.00 0.00 0.00 3.51
3924 4372 4.765273 TGCGTTACATTCATAGTCACCAT 58.235 39.130 0.00 0.00 0.00 3.55
3925 4373 4.195225 TGCGTTACATTCATAGTCACCA 57.805 40.909 0.00 0.00 0.00 4.17
3926 4374 4.024893 CCATGCGTTACATTCATAGTCACC 60.025 45.833 0.00 0.00 36.64 4.02
3927 4375 4.024893 CCCATGCGTTACATTCATAGTCAC 60.025 45.833 0.00 0.00 36.64 3.67
3928 4376 4.126437 CCCATGCGTTACATTCATAGTCA 58.874 43.478 0.00 0.00 36.64 3.41
3929 4377 3.498397 CCCCATGCGTTACATTCATAGTC 59.502 47.826 0.00 0.00 36.64 2.59
3930 4378 3.135712 TCCCCATGCGTTACATTCATAGT 59.864 43.478 0.00 0.00 36.64 2.12
3931 4379 3.738982 TCCCCATGCGTTACATTCATAG 58.261 45.455 0.00 0.00 36.64 2.23
3932 4380 3.847671 TCCCCATGCGTTACATTCATA 57.152 42.857 0.00 0.00 36.64 2.15
3933 4381 2.727123 TCCCCATGCGTTACATTCAT 57.273 45.000 0.00 0.00 36.64 2.57
3934 4382 2.498644 TTCCCCATGCGTTACATTCA 57.501 45.000 0.00 0.00 36.64 2.57
3935 4383 4.111916 CAAATTCCCCATGCGTTACATTC 58.888 43.478 0.00 0.00 36.64 2.67
3936 4384 3.766591 TCAAATTCCCCATGCGTTACATT 59.233 39.130 0.00 0.00 36.64 2.71
3937 4385 3.360867 TCAAATTCCCCATGCGTTACAT 58.639 40.909 0.00 0.00 40.66 2.29
3938 4386 2.752354 CTCAAATTCCCCATGCGTTACA 59.248 45.455 0.00 0.00 0.00 2.41
3939 4387 3.013921 TCTCAAATTCCCCATGCGTTAC 58.986 45.455 0.00 0.00 0.00 2.50
3940 4388 3.054728 TCTCTCAAATTCCCCATGCGTTA 60.055 43.478 0.00 0.00 0.00 3.18
3941 4389 2.094675 CTCTCAAATTCCCCATGCGTT 58.905 47.619 0.00 0.00 0.00 4.84
3942 4390 1.281867 TCTCTCAAATTCCCCATGCGT 59.718 47.619 0.00 0.00 0.00 5.24
3943 4391 1.672881 GTCTCTCAAATTCCCCATGCG 59.327 52.381 0.00 0.00 0.00 4.73
3944 4392 2.686915 CTGTCTCTCAAATTCCCCATGC 59.313 50.000 0.00 0.00 0.00 4.06
3945 4393 4.197750 CTCTGTCTCTCAAATTCCCCATG 58.802 47.826 0.00 0.00 0.00 3.66
3946 4394 3.371380 GCTCTGTCTCTCAAATTCCCCAT 60.371 47.826 0.00 0.00 0.00 4.00
3947 4395 2.026822 GCTCTGTCTCTCAAATTCCCCA 60.027 50.000 0.00 0.00 0.00 4.96
3948 4396 2.026822 TGCTCTGTCTCTCAAATTCCCC 60.027 50.000 0.00 0.00 0.00 4.81
3949 4397 3.269178 CTGCTCTGTCTCTCAAATTCCC 58.731 50.000 0.00 0.00 0.00 3.97
3950 4398 2.677337 GCTGCTCTGTCTCTCAAATTCC 59.323 50.000 0.00 0.00 0.00 3.01
3951 4399 3.332919 TGCTGCTCTGTCTCTCAAATTC 58.667 45.455 0.00 0.00 0.00 2.17
3952 4400 3.413846 TGCTGCTCTGTCTCTCAAATT 57.586 42.857 0.00 0.00 0.00 1.82
3953 4401 3.413846 TTGCTGCTCTGTCTCTCAAAT 57.586 42.857 0.00 0.00 0.00 2.32
3954 4402 2.916702 TTGCTGCTCTGTCTCTCAAA 57.083 45.000 0.00 0.00 0.00 2.69
3955 4403 2.696506 CATTGCTGCTCTGTCTCTCAA 58.303 47.619 0.00 0.00 0.00 3.02
3956 4404 1.675116 GCATTGCTGCTCTGTCTCTCA 60.675 52.381 0.16 0.00 45.32 3.27
3957 4405 1.008329 GCATTGCTGCTCTGTCTCTC 58.992 55.000 0.16 0.00 45.32 3.20
3958 4406 3.156157 GCATTGCTGCTCTGTCTCT 57.844 52.632 0.16 0.00 45.32 3.10
3968 4416 0.317854 CGATCATGCCTGCATTGCTG 60.318 55.000 10.49 9.39 33.90 4.41
3969 4417 0.750546 ACGATCATGCCTGCATTGCT 60.751 50.000 10.49 0.00 33.90 3.91
3970 4418 0.317603 GACGATCATGCCTGCATTGC 60.318 55.000 0.97 0.46 33.90 3.56
3971 4419 0.041576 CGACGATCATGCCTGCATTG 60.042 55.000 0.97 0.00 33.90 2.82
3972 4420 0.179076 TCGACGATCATGCCTGCATT 60.179 50.000 0.97 0.00 33.90 3.56
3973 4421 0.877649 GTCGACGATCATGCCTGCAT 60.878 55.000 0.00 0.00 37.08 3.96
3974 4422 1.519234 GTCGACGATCATGCCTGCA 60.519 57.895 0.00 0.00 0.00 4.41
3975 4423 0.807667 AAGTCGACGATCATGCCTGC 60.808 55.000 10.46 0.00 0.00 4.85
3976 4424 3.352447 AAGTCGACGATCATGCCTG 57.648 52.632 10.46 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.