Multiple sequence alignment - TraesCS3D01G326900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G326900 chr3D 100.000 4880 0 0 1 4880 438940214 438945093 0.000000e+00 9012.0
1 TraesCS3D01G326900 chr3A 92.086 2363 116 34 1901 4241 578873596 578875909 0.000000e+00 3262.0
2 TraesCS3D01G326900 chr3A 88.532 1587 115 31 225 1781 578872021 578873570 0.000000e+00 1860.0
3 TraesCS3D01G326900 chr3A 86.731 618 60 12 4275 4880 578876113 578876720 0.000000e+00 667.0
4 TraesCS3D01G326900 chr3B 94.885 1525 52 12 2576 4082 575256850 575258366 0.000000e+00 2361.0
5 TraesCS3D01G326900 chr3B 91.121 1588 100 22 137 1701 575254480 575256049 0.000000e+00 2113.0
6 TraesCS3D01G326900 chr3B 94.858 564 21 2 1901 2464 575256193 575256748 0.000000e+00 874.0
7 TraesCS3D01G326900 chr3B 85.714 364 28 8 4525 4880 576143056 576143403 3.590000e-96 363.0
8 TraesCS3D01G326900 chr3B 95.238 147 7 0 1 147 575253186 575253332 2.940000e-57 233.0
9 TraesCS3D01G326900 chr3B 90.385 52 1 1 2526 2573 575256772 575256823 1.130000e-06 65.8
10 TraesCS3D01G326900 chr1A 87.776 679 78 5 3180 3855 452020202 452020878 0.000000e+00 789.0
11 TraesCS3D01G326900 chr1A 87.106 667 83 1 3192 3855 500563597 500562931 0.000000e+00 752.0
12 TraesCS3D01G326900 chr1A 89.904 416 40 2 1946 2360 500565289 500564875 7.190000e-148 534.0
13 TraesCS3D01G326900 chr1A 92.014 288 23 0 2824 3111 500564360 500564073 5.880000e-109 405.0
14 TraesCS3D01G326900 chr1A 83.416 404 67 0 1953 2356 452018570 452018973 4.610000e-100 375.0
15 TraesCS3D01G326900 chr1B 87.704 675 78 5 3184 3855 473824087 473824759 0.000000e+00 782.0
16 TraesCS3D01G326900 chr1B 87.425 668 81 1 3191 3855 544997398 544996731 0.000000e+00 765.0
17 TraesCS3D01G326900 chr1B 90.024 411 40 1 1946 2356 544999073 544998664 9.300000e-147 531.0
18 TraesCS3D01G326900 chr1B 91.667 288 24 0 2824 3111 544998179 544997892 2.740000e-107 399.0
19 TraesCS3D01G326900 chr1B 83.168 404 68 0 1953 2356 473822301 473822704 2.150000e-98 370.0
20 TraesCS3D01G326900 chr4A 80.702 1026 175 15 2834 3853 596625633 596624625 0.000000e+00 776.0
21 TraesCS3D01G326900 chr1D 87.706 667 78 4 3192 3855 351247226 351247891 0.000000e+00 774.0
22 TraesCS3D01G326900 chr1D 86.784 681 86 2 3178 3855 405111124 405110445 0.000000e+00 756.0
23 TraesCS3D01G326900 chr1D 90.361 415 39 1 1947 2360 405112807 405112393 1.190000e-150 544.0
24 TraesCS3D01G326900 chr1D 91.667 288 24 0 2824 3111 405111873 405111586 2.740000e-107 399.0
25 TraesCS3D01G326900 chr5D 87.443 661 78 3 3196 3855 483698688 483699344 0.000000e+00 756.0
26 TraesCS3D01G326900 chrUn 81.796 401 71 2 1956 2355 126673962 126674361 7.830000e-88 335.0
27 TraesCS3D01G326900 chr5A 81.297 401 73 2 1956 2355 691671083 691670684 1.690000e-84 324.0
28 TraesCS3D01G326900 chr2B 84.375 288 45 0 2824 3111 59179999 59180286 2.880000e-72 283.0
29 TraesCS3D01G326900 chr7D 83.094 278 47 0 2834 3111 573692842 573693119 2.250000e-63 254.0
30 TraesCS3D01G326900 chr7D 100.000 28 0 0 4499 4526 512209068 512209041 9.000000e-03 52.8
31 TraesCS3D01G326900 chr4D 80.000 280 56 0 2834 3113 6898537 6898816 1.780000e-49 207.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G326900 chr3D 438940214 438945093 4879 False 9012.000000 9012 100.000000 1 4880 1 chr3D.!!$F1 4879
1 TraesCS3D01G326900 chr3A 578872021 578876720 4699 False 1929.666667 3262 89.116333 225 4880 3 chr3A.!!$F1 4655
2 TraesCS3D01G326900 chr3B 575253186 575258366 5180 False 1129.360000 2361 93.297400 1 4082 5 chr3B.!!$F2 4081
3 TraesCS3D01G326900 chr1A 452018570 452020878 2308 False 582.000000 789 85.596000 1953 3855 2 chr1A.!!$F1 1902
4 TraesCS3D01G326900 chr1A 500562931 500565289 2358 True 563.666667 752 89.674667 1946 3855 3 chr1A.!!$R1 1909
5 TraesCS3D01G326900 chr1B 473822301 473824759 2458 False 576.000000 782 85.436000 1953 3855 2 chr1B.!!$F1 1902
6 TraesCS3D01G326900 chr1B 544996731 544999073 2342 True 565.000000 765 89.705333 1946 3855 3 chr1B.!!$R1 1909
7 TraesCS3D01G326900 chr4A 596624625 596625633 1008 True 776.000000 776 80.702000 2834 3853 1 chr4A.!!$R1 1019
8 TraesCS3D01G326900 chr1D 351247226 351247891 665 False 774.000000 774 87.706000 3192 3855 1 chr1D.!!$F1 663
9 TraesCS3D01G326900 chr1D 405110445 405112807 2362 True 566.333333 756 89.604000 1947 3855 3 chr1D.!!$R1 1908
10 TraesCS3D01G326900 chr5D 483698688 483699344 656 False 756.000000 756 87.443000 3196 3855 1 chr5D.!!$F1 659

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
430 1597 0.477204 TACGATCCGATCCCCTCACT 59.523 55.000 2.69 0.0 0.0 3.41 F
1466 2652 0.321830 GCCCGGCCTTGTTTACTGTA 60.322 55.000 0.00 0.0 0.0 2.74 F
1556 2748 0.461961 GGGGATCCACTCGACAGAAG 59.538 60.000 15.23 0.0 0.0 2.85 F
1819 3046 0.612744 TCCAGTTGTGCATGATCCGA 59.387 50.000 0.00 0.0 0.0 4.55 F
1820 3047 1.012086 CCAGTTGTGCATGATCCGAG 58.988 55.000 0.00 0.0 0.0 4.63 F
1821 3048 1.676916 CCAGTTGTGCATGATCCGAGT 60.677 52.381 0.00 0.0 0.0 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1589 2781 0.247736 AACGTGAGGCACCAGATCTC 59.752 55.000 0.00 0.0 0.00 2.75 R
2516 3745 0.181587 TTCCAAAGGTTCGACTGGCA 59.818 50.000 0.00 0.0 0.00 4.92 R
2568 3804 0.468226 GGTGGGCCGACAATCTGATA 59.532 55.000 20.36 0.0 0.00 2.15 R
3453 6242 1.600107 GGTGAGGTAACGGCCATGA 59.400 57.895 2.24 0.0 46.39 3.07 R
3825 6614 1.748122 GTACTCGCCCTCCTCGTCA 60.748 63.158 0.00 0.0 0.00 4.35 R
3887 6679 0.534877 AGCAAAGCACGACATGGACA 60.535 50.000 0.00 0.0 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 6.594788 ATCTCATGCTGTTTTTACCATTGT 57.405 33.333 0.00 0.00 0.00 2.71
170 1329 9.225201 CATAGATGTCCACATAATTCAAAAACG 57.775 33.333 0.00 0.00 36.57 3.60
174 1333 5.048364 TGTCCACATAATTCAAAAACGGGAG 60.048 40.000 0.00 0.00 0.00 4.30
201 1368 2.353307 GGGGCGGTTACAAAATTCCTTG 60.353 50.000 0.00 0.00 0.00 3.61
227 1394 7.283354 GGATAAAATCTCTGGTAACCTGGAAAG 59.717 40.741 0.00 0.00 0.00 2.62
232 1399 2.026262 TCTGGTAACCTGGAAAGGCATC 60.026 50.000 0.00 0.00 0.00 3.91
235 1402 2.026262 GGTAACCTGGAAAGGCATCTGA 60.026 50.000 0.00 0.00 0.00 3.27
265 1432 6.932356 TTGCTAATCCATTCTTCATGACTC 57.068 37.500 0.00 0.00 34.31 3.36
268 1435 2.315925 TCCATTCTTCATGACTCGCC 57.684 50.000 0.00 0.00 34.31 5.54
326 1493 3.873952 CCCGATCTGATCTCACCTTTTTC 59.126 47.826 15.16 0.00 0.00 2.29
392 1559 4.219507 TGCAAAACAAAAGAGGACACTTGA 59.780 37.500 0.00 0.00 0.00 3.02
397 1564 6.530019 AACAAAAGAGGACACTTGAAATGT 57.470 33.333 0.00 0.00 0.00 2.71
430 1597 0.477204 TACGATCCGATCCCCTCACT 59.523 55.000 2.69 0.00 0.00 3.41
431 1598 0.824182 ACGATCCGATCCCCTCACTC 60.824 60.000 2.69 0.00 0.00 3.51
432 1599 0.823769 CGATCCGATCCCCTCACTCA 60.824 60.000 2.69 0.00 0.00 3.41
479 1646 1.752833 GTGGAACTGGAACGGAGGT 59.247 57.895 0.00 0.00 38.67 3.85
790 1958 3.675619 GACATGCGGGCCCGTAAGT 62.676 63.158 42.53 39.98 38.49 2.24
795 1963 2.540228 GCGGGCCCGTAAGTAATGC 61.540 63.158 42.53 20.97 42.09 3.56
810 1978 2.370459 AATGCCCCAACCTGTCAGCA 62.370 55.000 0.00 0.00 34.28 4.41
811 1979 2.674380 GCCCCAACCTGTCAGCAG 60.674 66.667 0.00 0.00 42.22 4.24
820 1988 3.677284 CTGTCAGCAGGCGAGGCAT 62.677 63.158 0.00 0.00 39.01 4.40
859 2027 3.699894 CAGCTCTGGCCGGTGACT 61.700 66.667 17.90 10.71 39.73 3.41
1042 2221 2.786777 CCCACGGCTATTTAATACCCC 58.213 52.381 0.00 0.00 0.00 4.95
1044 2223 2.419667 CACGGCTATTTAATACCCCCG 58.580 52.381 10.43 10.43 40.01 5.73
1181 2362 4.033358 GTCATTCTTTACCAGTCTCATGCG 59.967 45.833 0.00 0.00 0.00 4.73
1213 2394 6.992063 ATCCTTAGTACTTTTGATGCTGTG 57.008 37.500 0.00 0.00 0.00 3.66
1316 2497 1.355916 GCGCTAGGATCTTCGTCGT 59.644 57.895 0.00 0.00 0.00 4.34
1329 2510 3.428870 TCTTCGTCGTCTTTGCTGATTTC 59.571 43.478 0.00 0.00 0.00 2.17
1345 2526 4.002982 TGATTTCTGTAGAGCAATGCGTT 58.997 39.130 0.00 0.00 0.00 4.84
1380 2563 8.282455 TGTAGTTCTCTCTATTCTAGGTTGTG 57.718 38.462 0.00 0.00 0.00 3.33
1384 2570 6.859112 TCTCTCTATTCTAGGTTGTGCTTT 57.141 37.500 0.00 0.00 0.00 3.51
1398 2584 4.902443 TGTGCTTTGATTTGTTCCGTTA 57.098 36.364 0.00 0.00 0.00 3.18
1400 2586 5.277825 TGTGCTTTGATTTGTTCCGTTAAG 58.722 37.500 0.00 0.00 0.00 1.85
1448 2634 2.509569 TCGACAGATCTGGATCTAGGC 58.490 52.381 26.08 8.63 45.78 3.93
1463 2649 2.035155 GGCCCGGCCTTGTTTACT 59.965 61.111 22.31 0.00 46.69 2.24
1464 2650 2.340328 GGCCCGGCCTTGTTTACTG 61.340 63.158 22.31 0.00 46.69 2.74
1465 2651 1.602605 GCCCGGCCTTGTTTACTGT 60.603 57.895 0.00 0.00 0.00 3.55
1466 2652 0.321830 GCCCGGCCTTGTTTACTGTA 60.322 55.000 0.00 0.00 0.00 2.74
1489 2677 8.638873 TGTATAGTGTGGTATATTCTGGAGTTG 58.361 37.037 0.00 0.00 0.00 3.16
1496 2684 8.983789 TGTGGTATATTCTGGAGTTGTGTTATA 58.016 33.333 0.00 0.00 0.00 0.98
1556 2748 0.461961 GGGGATCCACTCGACAGAAG 59.538 60.000 15.23 0.00 0.00 2.85
1557 2749 1.475403 GGGATCCACTCGACAGAAGA 58.525 55.000 15.23 0.00 0.00 2.87
1558 2750 1.407258 GGGATCCACTCGACAGAAGAG 59.593 57.143 15.23 0.00 41.27 2.85
1587 2779 2.169832 AGTTCACGGGTCATTGTCTG 57.830 50.000 0.00 0.00 0.00 3.51
1588 2780 1.416401 AGTTCACGGGTCATTGTCTGT 59.584 47.619 0.00 0.00 0.00 3.41
1589 2781 1.531149 GTTCACGGGTCATTGTCTGTG 59.469 52.381 12.30 12.30 40.55 3.66
1600 2792 2.462456 TTGTCTGTGAGATCTGGTGC 57.538 50.000 0.00 0.00 0.00 5.01
1602 2794 0.901124 GTCTGTGAGATCTGGTGCCT 59.099 55.000 0.00 0.00 0.00 4.75
1607 2799 0.900182 TGAGATCTGGTGCCTCACGT 60.900 55.000 0.00 0.00 34.83 4.49
1610 2802 0.798776 GATCTGGTGCCTCACGTTTG 59.201 55.000 0.00 0.00 34.83 2.93
1615 2807 1.279840 GTGCCTCACGTTTGTGCTC 59.720 57.895 0.00 0.00 46.01 4.26
1621 2813 2.223377 CCTCACGTTTGTGCTCTTTACC 59.777 50.000 0.00 0.00 46.01 2.85
1626 2818 3.311596 ACGTTTGTGCTCTTTACCAGTTC 59.688 43.478 0.00 0.00 0.00 3.01
1629 2821 5.452777 GTTTGTGCTCTTTACCAGTTCATC 58.547 41.667 0.00 0.00 0.00 2.92
1637 2829 6.174720 TCTTTACCAGTTCATCTGTCAGTT 57.825 37.500 0.00 0.00 42.19 3.16
1640 2832 8.375506 TCTTTACCAGTTCATCTGTCAGTTTAT 58.624 33.333 0.00 0.00 42.19 1.40
1641 2833 9.653287 CTTTACCAGTTCATCTGTCAGTTTATA 57.347 33.333 0.00 0.00 42.19 0.98
1642 2834 9.653287 TTTACCAGTTCATCTGTCAGTTTATAG 57.347 33.333 0.00 0.00 42.19 1.31
1643 2835 7.246171 ACCAGTTCATCTGTCAGTTTATAGT 57.754 36.000 0.00 0.00 42.19 2.12
1644 2836 7.099764 ACCAGTTCATCTGTCAGTTTATAGTG 58.900 38.462 0.00 0.00 42.19 2.74
1645 2837 7.099764 CCAGTTCATCTGTCAGTTTATAGTGT 58.900 38.462 0.00 0.00 42.19 3.55
1646 2838 8.251026 CCAGTTCATCTGTCAGTTTATAGTGTA 58.749 37.037 0.00 0.00 42.19 2.90
1647 2839 9.295214 CAGTTCATCTGTCAGTTTATAGTGTAG 57.705 37.037 0.00 0.00 39.17 2.74
1648 2840 9.244292 AGTTCATCTGTCAGTTTATAGTGTAGA 57.756 33.333 0.00 0.00 0.00 2.59
1649 2841 9.509855 GTTCATCTGTCAGTTTATAGTGTAGAG 57.490 37.037 0.00 0.00 0.00 2.43
1650 2842 8.226819 TCATCTGTCAGTTTATAGTGTAGAGG 57.773 38.462 0.00 0.00 0.00 3.69
1651 2843 7.834681 TCATCTGTCAGTTTATAGTGTAGAGGT 59.165 37.037 0.00 0.00 30.47 3.85
1656 2848 7.870954 TGTCAGTTTATAGTGTAGAGGTTTGTG 59.129 37.037 0.00 0.00 0.00 3.33
1657 2849 7.871463 GTCAGTTTATAGTGTAGAGGTTTGTGT 59.129 37.037 0.00 0.00 0.00 3.72
1659 2851 7.870954 CAGTTTATAGTGTAGAGGTTTGTGTCA 59.129 37.037 0.00 0.00 0.00 3.58
1677 2873 6.397272 TGTGTCATTTTTGCTTGAAAACTCT 58.603 32.000 0.00 0.00 33.09 3.24
1689 2885 5.526846 GCTTGAAAACTCTGGATCTAGATGG 59.473 44.000 10.74 1.56 0.00 3.51
1701 2919 5.370584 TGGATCTAGATGGGTTCAATGACAT 59.629 40.000 10.74 0.00 0.00 3.06
1702 2920 6.558394 TGGATCTAGATGGGTTCAATGACATA 59.442 38.462 10.74 0.00 0.00 2.29
1703 2921 6.876257 GGATCTAGATGGGTTCAATGACATAC 59.124 42.308 10.74 0.00 0.00 2.39
1704 2922 5.842907 TCTAGATGGGTTCAATGACATACG 58.157 41.667 0.00 0.00 0.00 3.06
1705 2923 3.206150 AGATGGGTTCAATGACATACGC 58.794 45.455 0.00 0.00 0.00 4.42
1706 2924 2.481289 TGGGTTCAATGACATACGCA 57.519 45.000 3.22 3.22 0.00 5.24
1707 2925 2.997980 TGGGTTCAATGACATACGCAT 58.002 42.857 3.22 0.00 0.00 4.73
1708 2926 4.143986 TGGGTTCAATGACATACGCATA 57.856 40.909 3.22 0.00 0.00 3.14
1709 2927 4.126437 TGGGTTCAATGACATACGCATAG 58.874 43.478 3.22 0.00 0.00 2.23
1710 2928 4.141824 TGGGTTCAATGACATACGCATAGA 60.142 41.667 3.22 0.00 0.00 1.98
1711 2929 4.814234 GGGTTCAATGACATACGCATAGAA 59.186 41.667 0.00 0.00 0.00 2.10
1712 2930 5.050091 GGGTTCAATGACATACGCATAGAAG 60.050 44.000 0.00 0.00 0.00 2.85
1713 2931 5.523916 GGTTCAATGACATACGCATAGAAGT 59.476 40.000 0.00 0.00 0.00 3.01
1714 2932 6.037172 GGTTCAATGACATACGCATAGAAGTT 59.963 38.462 0.00 0.00 0.00 2.66
1715 2933 6.828502 TCAATGACATACGCATAGAAGTTC 57.171 37.500 0.00 0.00 0.00 3.01
1716 2934 6.337356 TCAATGACATACGCATAGAAGTTCA 58.663 36.000 5.50 0.00 0.00 3.18
1717 2935 6.476706 TCAATGACATACGCATAGAAGTTCAG 59.523 38.462 5.50 0.00 0.00 3.02
1718 2936 5.324784 TGACATACGCATAGAAGTTCAGT 57.675 39.130 5.50 0.10 0.00 3.41
1719 2937 5.102313 TGACATACGCATAGAAGTTCAGTG 58.898 41.667 5.50 4.51 0.00 3.66
1720 2938 3.865745 ACATACGCATAGAAGTTCAGTGC 59.134 43.478 17.64 17.64 0.00 4.40
1721 2939 1.726853 ACGCATAGAAGTTCAGTGCC 58.273 50.000 20.18 8.44 32.39 5.01
1722 2940 1.001974 ACGCATAGAAGTTCAGTGCCA 59.998 47.619 20.18 0.00 32.39 4.92
1723 2941 1.662629 CGCATAGAAGTTCAGTGCCAG 59.337 52.381 20.18 8.91 32.39 4.85
1724 2942 2.704572 GCATAGAAGTTCAGTGCCAGT 58.295 47.619 17.09 0.00 0.00 4.00
1736 2954 1.425066 AGTGCCAGTTGGGATCTGAAA 59.575 47.619 0.00 0.00 40.01 2.69
1738 2956 1.144708 TGCCAGTTGGGATCTGAAACA 59.855 47.619 0.00 0.00 40.01 2.83
1739 2957 1.815003 GCCAGTTGGGATCTGAAACAG 59.185 52.381 0.00 0.00 40.01 3.16
1744 2962 3.084039 GTTGGGATCTGAAACAGCATGA 58.916 45.455 0.00 0.00 39.69 3.07
1746 2964 1.674962 GGGATCTGAAACAGCATGAGC 59.325 52.381 0.00 0.00 39.69 4.26
1769 2987 5.390356 GCTGTTTCTGTAGATCTGTGCTTTC 60.390 44.000 5.18 0.00 0.00 2.62
1776 2994 5.907207 TGTAGATCTGTGCTTTCCTGATAC 58.093 41.667 5.18 0.00 0.00 2.24
1782 3009 2.158957 TGTGCTTTCCTGATACGATCCC 60.159 50.000 0.00 0.00 0.00 3.85
1789 3016 5.483685 TTCCTGATACGATCCCCATTAAG 57.516 43.478 0.00 0.00 0.00 1.85
1791 3018 4.283467 TCCTGATACGATCCCCATTAAGTG 59.717 45.833 0.00 0.00 0.00 3.16
1817 3044 1.098050 GGTCCAGTTGTGCATGATCC 58.902 55.000 0.00 0.00 0.00 3.36
1818 3045 0.729116 GTCCAGTTGTGCATGATCCG 59.271 55.000 0.00 0.00 0.00 4.18
1819 3046 0.612744 TCCAGTTGTGCATGATCCGA 59.387 50.000 0.00 0.00 0.00 4.55
1820 3047 1.012086 CCAGTTGTGCATGATCCGAG 58.988 55.000 0.00 0.00 0.00 4.63
1821 3048 1.676916 CCAGTTGTGCATGATCCGAGT 60.677 52.381 0.00 0.00 0.00 4.18
1822 3049 2.079158 CAGTTGTGCATGATCCGAGTT 58.921 47.619 0.00 0.00 0.00 3.01
1823 3050 3.261580 CAGTTGTGCATGATCCGAGTTA 58.738 45.455 0.00 0.00 0.00 2.24
1824 3051 3.684305 CAGTTGTGCATGATCCGAGTTAA 59.316 43.478 0.00 0.00 0.00 2.01
1825 3052 4.333649 CAGTTGTGCATGATCCGAGTTAAT 59.666 41.667 0.00 0.00 0.00 1.40
1826 3053 4.943705 AGTTGTGCATGATCCGAGTTAATT 59.056 37.500 0.00 0.00 0.00 1.40
1827 3054 5.065218 AGTTGTGCATGATCCGAGTTAATTC 59.935 40.000 0.00 0.00 0.00 2.17
1828 3055 4.769688 TGTGCATGATCCGAGTTAATTCT 58.230 39.130 0.00 0.00 0.00 2.40
1829 3056 4.571984 TGTGCATGATCCGAGTTAATTCTG 59.428 41.667 0.00 0.00 0.00 3.02
1830 3057 4.811024 GTGCATGATCCGAGTTAATTCTGA 59.189 41.667 0.00 0.00 0.00 3.27
1831 3058 5.468072 GTGCATGATCCGAGTTAATTCTGAT 59.532 40.000 4.86 4.86 0.00 2.90
1832 3059 6.646653 GTGCATGATCCGAGTTAATTCTGATA 59.353 38.462 0.00 0.00 0.00 2.15
1833 3060 6.870439 TGCATGATCCGAGTTAATTCTGATAG 59.130 38.462 0.00 1.59 0.00 2.08
1834 3061 6.183360 GCATGATCCGAGTTAATTCTGATAGC 60.183 42.308 0.00 6.55 0.00 2.97
1835 3062 6.405278 TGATCCGAGTTAATTCTGATAGCA 57.595 37.500 5.13 0.00 0.00 3.49
1836 3063 6.816136 TGATCCGAGTTAATTCTGATAGCAA 58.184 36.000 5.13 0.00 0.00 3.91
1837 3064 6.925718 TGATCCGAGTTAATTCTGATAGCAAG 59.074 38.462 5.13 0.00 0.00 4.01
1838 3065 6.222038 TCCGAGTTAATTCTGATAGCAAGT 57.778 37.500 0.00 0.00 0.00 3.16
1839 3066 6.640518 TCCGAGTTAATTCTGATAGCAAGTT 58.359 36.000 0.00 0.00 0.00 2.66
1840 3067 7.778083 TCCGAGTTAATTCTGATAGCAAGTTA 58.222 34.615 0.00 0.00 0.00 2.24
1841 3068 7.921214 TCCGAGTTAATTCTGATAGCAAGTTAG 59.079 37.037 0.00 0.00 0.00 2.34
1842 3069 7.306866 CCGAGTTAATTCTGATAGCAAGTTAGC 60.307 40.741 0.00 0.00 0.00 3.09
1848 3075 7.778470 ATTCTGATAGCAAGTTAGCAACTAC 57.222 36.000 2.60 0.00 41.91 2.73
1850 3077 4.430007 TGATAGCAAGTTAGCAACTACCG 58.570 43.478 2.60 0.00 41.91 4.02
1851 3078 4.158949 TGATAGCAAGTTAGCAACTACCGA 59.841 41.667 2.60 0.00 41.91 4.69
1857 3084 5.121142 GCAAGTTAGCAACTACCGATTGTTA 59.879 40.000 2.60 0.00 41.91 2.41
1858 3085 6.531439 CAAGTTAGCAACTACCGATTGTTAC 58.469 40.000 2.60 0.00 41.91 2.50
1875 3102 8.054236 CGATTGTTACATCGGTTACTTATGTTC 58.946 37.037 8.01 4.56 35.54 3.18
1877 3104 6.938507 TGTTACATCGGTTACTTATGTTCCT 58.061 36.000 8.01 0.00 35.54 3.36
1880 3107 9.189723 GTTACATCGGTTACTTATGTTCCTATC 57.810 37.037 8.01 0.00 35.54 2.08
1882 3109 6.325545 ACATCGGTTACTTATGTTCCTATCCA 59.674 38.462 0.00 0.00 29.68 3.41
1883 3110 6.989155 TCGGTTACTTATGTTCCTATCCAT 57.011 37.500 0.00 0.00 0.00 3.41
1884 3111 6.755206 TCGGTTACTTATGTTCCTATCCATG 58.245 40.000 0.00 0.00 0.00 3.66
1885 3112 5.408604 CGGTTACTTATGTTCCTATCCATGC 59.591 44.000 0.00 0.00 0.00 4.06
1886 3113 6.534634 GGTTACTTATGTTCCTATCCATGCT 58.465 40.000 0.00 0.00 0.00 3.79
1887 3114 6.651225 GGTTACTTATGTTCCTATCCATGCTC 59.349 42.308 0.00 0.00 0.00 4.26
1888 3115 5.234466 ACTTATGTTCCTATCCATGCTCC 57.766 43.478 0.00 0.00 0.00 4.70
1889 3116 4.660303 ACTTATGTTCCTATCCATGCTCCA 59.340 41.667 0.00 0.00 0.00 3.86
1890 3117 5.132648 ACTTATGTTCCTATCCATGCTCCAA 59.867 40.000 0.00 0.00 0.00 3.53
1891 3118 4.736611 ATGTTCCTATCCATGCTCCAAT 57.263 40.909 0.00 0.00 0.00 3.16
1892 3119 5.848286 ATGTTCCTATCCATGCTCCAATA 57.152 39.130 0.00 0.00 0.00 1.90
1893 3120 5.848286 TGTTCCTATCCATGCTCCAATAT 57.152 39.130 0.00 0.00 0.00 1.28
1894 3121 5.809001 TGTTCCTATCCATGCTCCAATATC 58.191 41.667 0.00 0.00 0.00 1.63
1895 3122 5.549228 TGTTCCTATCCATGCTCCAATATCT 59.451 40.000 0.00 0.00 0.00 1.98
1896 3123 5.688814 TCCTATCCATGCTCCAATATCTG 57.311 43.478 0.00 0.00 0.00 2.90
1897 3124 5.344566 TCCTATCCATGCTCCAATATCTGA 58.655 41.667 0.00 0.00 0.00 3.27
1898 3125 5.968784 TCCTATCCATGCTCCAATATCTGAT 59.031 40.000 0.00 0.00 0.00 2.90
1899 3126 7.134842 TCCTATCCATGCTCCAATATCTGATA 58.865 38.462 0.00 0.00 0.00 2.15
1910 3137 7.754027 GCTCCAATATCTGATATTGTTGCAATC 59.246 37.037 31.93 19.68 46.71 2.67
1915 3142 6.879276 ATCTGATATTGTTGCAATCTCTGG 57.121 37.500 0.59 0.00 0.00 3.86
1917 3144 5.587443 TCTGATATTGTTGCAATCTCTGGTG 59.413 40.000 0.59 0.00 0.00 4.17
1928 3155 4.082026 GCAATCTCTGGTGTTAATTTGGCT 60.082 41.667 0.00 0.00 0.00 4.75
1937 3164 4.495844 GGTGTTAATTTGGCTATGCGTCTC 60.496 45.833 0.00 0.00 0.00 3.36
2361 3588 3.324846 TGACTGTCTGCAAGGTAATGAGT 59.675 43.478 9.51 0.00 0.00 3.41
2422 3649 8.511604 AATCCTGTTTATTCCATTAGAGTGTG 57.488 34.615 0.00 0.00 0.00 3.82
2423 3650 5.880332 TCCTGTTTATTCCATTAGAGTGTGC 59.120 40.000 0.00 0.00 0.00 4.57
2424 3651 5.647658 CCTGTTTATTCCATTAGAGTGTGCA 59.352 40.000 0.00 0.00 0.00 4.57
2425 3652 6.319658 CCTGTTTATTCCATTAGAGTGTGCAT 59.680 38.462 0.00 0.00 0.00 3.96
2510 3739 4.761739 GTGATGGTTGTGAATTCTGGAAGA 59.238 41.667 7.05 0.00 44.68 2.87
2519 3748 3.011517 TCTGGAAGAGGGCCTGCC 61.012 66.667 12.95 10.54 38.67 4.85
2521 3750 3.333219 TGGAAGAGGGCCTGCCAG 61.333 66.667 12.95 0.00 45.96 4.85
2522 3751 3.334054 GGAAGAGGGCCTGCCAGT 61.334 66.667 12.95 0.00 40.65 4.00
2523 3752 2.270527 GAAGAGGGCCTGCCAGTC 59.729 66.667 12.95 6.10 37.98 3.51
2524 3753 3.672295 GAAGAGGGCCTGCCAGTCG 62.672 68.421 12.95 0.00 37.98 4.18
2525 3754 4.704103 AGAGGGCCTGCCAGTCGA 62.704 66.667 12.95 0.00 37.98 4.20
2557 3786 2.552599 TTTACATGTCCGGCACTCAA 57.447 45.000 0.00 0.00 0.00 3.02
2561 3797 3.281727 ACATGTCCGGCACTCAATTAT 57.718 42.857 0.00 0.00 0.00 1.28
2562 3798 4.415881 ACATGTCCGGCACTCAATTATA 57.584 40.909 0.00 0.00 0.00 0.98
2563 3799 4.127171 ACATGTCCGGCACTCAATTATAC 58.873 43.478 0.00 0.00 0.00 1.47
2567 3803 5.919755 TGTCCGGCACTCAATTATACATAA 58.080 37.500 0.00 0.00 0.00 1.90
2568 3804 6.530120 TGTCCGGCACTCAATTATACATAAT 58.470 36.000 0.00 0.00 34.59 1.28
2569 3805 7.672240 TGTCCGGCACTCAATTATACATAATA 58.328 34.615 0.00 0.00 32.91 0.98
2637 3901 8.791327 TTATCAGTGCAAATATTCTTGTGAGA 57.209 30.769 0.00 0.00 0.00 3.27
2762 4165 7.118390 AGTGTACTCAATTGCTGTATTGTTCTC 59.882 37.037 0.00 0.00 36.95 2.87
2767 4170 8.887717 ACTCAATTGCTGTATTGTTCTCTATTC 58.112 33.333 0.00 0.00 36.95 1.75
3062 4611 1.795286 GTTCTTGACAACGAGGCTCTG 59.205 52.381 13.50 7.59 0.00 3.35
3131 4681 2.095718 GCCACTTCAACTTTCATCGTCC 60.096 50.000 0.00 0.00 0.00 4.79
3171 5252 6.431234 GTCTTCTTTGGAGAACACCATGTAAT 59.569 38.462 0.00 0.00 39.82 1.89
3173 5254 7.505585 TCTTCTTTGGAGAACACCATGTAATTT 59.494 33.333 0.00 0.00 39.82 1.82
3174 5255 7.595819 TCTTTGGAGAACACCATGTAATTTT 57.404 32.000 0.00 0.00 39.82 1.82
3825 6614 0.911525 AGTACCAGGATGCCACTGCT 60.912 55.000 0.00 0.00 38.71 4.24
3887 6679 2.127708 GGAGGACATGTAAGGTGGGAT 58.872 52.381 0.00 0.00 0.00 3.85
4020 6814 2.237392 TCTTCCTGCCTTTCCTAAGCTC 59.763 50.000 0.00 0.00 0.00 4.09
4072 6879 4.024893 GGTATTGTATCACTTGATGCCGTG 60.025 45.833 1.77 0.00 36.50 4.94
4100 6907 3.279434 GTTCTGTGTTGAGGTTTCTGGT 58.721 45.455 0.00 0.00 0.00 4.00
4101 6908 3.644966 TCTGTGTTGAGGTTTCTGGTT 57.355 42.857 0.00 0.00 0.00 3.67
4112 6919 2.147150 GTTTCTGGTTCTCTCTGGTGC 58.853 52.381 0.00 0.00 0.00 5.01
4118 6925 2.373169 TGGTTCTCTCTGGTGCTGAATT 59.627 45.455 0.00 0.00 0.00 2.17
4119 6926 3.006247 GGTTCTCTCTGGTGCTGAATTC 58.994 50.000 0.00 0.00 0.00 2.17
4120 6927 3.557898 GGTTCTCTCTGGTGCTGAATTCA 60.558 47.826 8.12 8.12 0.00 2.57
4121 6928 3.606595 TCTCTCTGGTGCTGAATTCAG 57.393 47.619 27.82 27.82 46.40 3.02
4122 6929 2.235650 TCTCTCTGGTGCTGAATTCAGG 59.764 50.000 31.41 17.40 43.94 3.86
4123 6930 1.093159 CTCTGGTGCTGAATTCAGGC 58.907 55.000 31.41 23.98 43.94 4.85
4124 6931 0.694771 TCTGGTGCTGAATTCAGGCT 59.305 50.000 31.41 0.00 43.94 4.58
4143 6950 5.006386 AGGCTTTCTGAGTTGGTATTTCTG 58.994 41.667 0.00 0.00 0.00 3.02
4144 6951 4.379918 GGCTTTCTGAGTTGGTATTTCTGC 60.380 45.833 0.00 0.00 0.00 4.26
4145 6952 4.670221 GCTTTCTGAGTTGGTATTTCTGCG 60.670 45.833 0.00 0.00 0.00 5.18
4146 6953 2.972625 TCTGAGTTGGTATTTCTGCGG 58.027 47.619 0.00 0.00 0.00 5.69
4147 6954 2.301870 TCTGAGTTGGTATTTCTGCGGT 59.698 45.455 0.00 0.00 0.00 5.68
4149 6956 4.020928 TCTGAGTTGGTATTTCTGCGGTAA 60.021 41.667 0.00 0.00 0.00 2.85
4151 6958 5.250200 TGAGTTGGTATTTCTGCGGTAATT 58.750 37.500 2.46 0.00 0.00 1.40
4152 6959 6.408035 TGAGTTGGTATTTCTGCGGTAATTA 58.592 36.000 2.46 0.00 0.00 1.40
4155 6962 8.288689 AGTTGGTATTTCTGCGGTAATTATTT 57.711 30.769 2.46 0.00 0.00 1.40
4156 6963 8.745590 AGTTGGTATTTCTGCGGTAATTATTTT 58.254 29.630 2.46 0.00 0.00 1.82
4157 6964 8.803799 GTTGGTATTTCTGCGGTAATTATTTTG 58.196 33.333 2.46 0.00 0.00 2.44
4158 6965 8.057536 TGGTATTTCTGCGGTAATTATTTTGT 57.942 30.769 2.46 0.00 0.00 2.83
4159 6966 8.185505 TGGTATTTCTGCGGTAATTATTTTGTC 58.814 33.333 2.46 0.00 0.00 3.18
4162 6969 6.483385 TTCTGCGGTAATTATTTTGTCGAA 57.517 33.333 0.00 0.00 0.00 3.71
4164 6971 7.079182 TCTGCGGTAATTATTTTGTCGAATT 57.921 32.000 0.00 0.00 0.00 2.17
4165 6972 7.184106 TCTGCGGTAATTATTTTGTCGAATTC 58.816 34.615 0.00 0.00 0.00 2.17
4166 6973 7.065324 TCTGCGGTAATTATTTTGTCGAATTCT 59.935 33.333 3.52 0.00 0.00 2.40
4167 6974 6.964370 TGCGGTAATTATTTTGTCGAATTCTG 59.036 34.615 3.52 0.00 0.00 3.02
4169 6976 6.910433 CGGTAATTATTTTGTCGAATTCTGGG 59.090 38.462 3.52 0.00 0.00 4.45
4170 6977 7.414762 CGGTAATTATTTTGTCGAATTCTGGGT 60.415 37.037 3.52 0.00 0.00 4.51
4172 6979 3.575965 ATTTTGTCGAATTCTGGGTGC 57.424 42.857 3.52 0.00 0.00 5.01
4175 6984 1.737838 TGTCGAATTCTGGGTGCATC 58.262 50.000 3.52 0.00 0.00 3.91
4210 7030 1.734465 GTGAATTCTCAAGTGGCCTCG 59.266 52.381 3.32 0.00 31.88 4.63
4251 7168 1.079612 CGTGCTGTGATGCCTCTCA 60.080 57.895 0.00 0.00 0.00 3.27
4261 7178 0.251354 ATGCCTCTCACGCTCATTGT 59.749 50.000 0.00 0.00 0.00 2.71
4276 7193 5.114780 GCTCATTGTTTCTGCTCTGAGATA 58.885 41.667 9.28 0.00 33.59 1.98
4290 7278 9.195411 CTGCTCTGAGATATATGAGTTTTCTTC 57.805 37.037 9.28 0.00 0.00 2.87
4312 7300 1.904287 TGAAACGGTCATGGGGAAAG 58.096 50.000 0.00 0.00 0.00 2.62
4333 7321 4.200092 AGCTCCCGACCTGAAAATATTTC 58.800 43.478 0.10 0.00 0.00 2.17
4340 7328 5.353123 CCGACCTGAAAATATTTCGAAAGGA 59.647 40.000 16.80 7.22 0.00 3.36
4359 7347 8.552034 CGAAAGGAAATTGATGGATAGTAACTC 58.448 37.037 0.00 0.00 0.00 3.01
4360 7348 8.753497 AAAGGAAATTGATGGATAGTAACTCC 57.247 34.615 0.00 0.00 0.00 3.85
4361 7349 7.698163 AGGAAATTGATGGATAGTAACTCCT 57.302 36.000 0.00 0.00 33.69 3.69
4363 7351 7.348274 AGGAAATTGATGGATAGTAACTCCTGA 59.652 37.037 0.00 0.00 33.69 3.86
4377 7365 4.713792 ACTCCTGACCTCATGAGTTTTT 57.286 40.909 21.11 2.68 45.33 1.94
4403 7391 9.624697 TTTATTTCAAACACTCATGCTCATTAC 57.375 29.630 0.00 0.00 0.00 1.89
4415 7403 4.846779 TGCTCATTACAGGAAAACCAAC 57.153 40.909 0.00 0.00 0.00 3.77
4428 7416 5.946377 AGGAAAACCAACTATTCATGAGGTC 59.054 40.000 2.80 0.00 0.00 3.85
4438 7426 7.423844 ACTATTCATGAGGTCTGATGTACAA 57.576 36.000 0.00 0.00 0.00 2.41
4447 7435 4.896482 AGGTCTGATGTACAATACTCCCTC 59.104 45.833 0.00 0.00 0.00 4.30
4449 7437 4.039366 GTCTGATGTACAATACTCCCTCCC 59.961 50.000 0.00 0.00 0.00 4.30
4452 7440 4.593206 TGATGTACAATACTCCCTCCCATC 59.407 45.833 0.00 0.00 0.00 3.51
4460 7448 6.215636 ACAATACTCCCTCCCATCCATATTAC 59.784 42.308 0.00 0.00 0.00 1.89
4465 7453 4.981647 TCCCTCCCATCCATATTACTTGTT 59.018 41.667 0.00 0.00 0.00 2.83
4467 7455 6.068498 TCCCTCCCATCCATATTACTTGTTTT 60.068 38.462 0.00 0.00 0.00 2.43
4469 7457 6.607198 CCTCCCATCCATATTACTTGTTTTGT 59.393 38.462 0.00 0.00 0.00 2.83
4470 7458 7.201821 CCTCCCATCCATATTACTTGTTTTGTC 60.202 40.741 0.00 0.00 0.00 3.18
4471 7459 7.410174 TCCCATCCATATTACTTGTTTTGTCT 58.590 34.615 0.00 0.00 0.00 3.41
4472 7460 8.553153 TCCCATCCATATTACTTGTTTTGTCTA 58.447 33.333 0.00 0.00 0.00 2.59
4473 7461 8.840321 CCCATCCATATTACTTGTTTTGTCTAG 58.160 37.037 0.00 0.00 0.00 2.43
4474 7462 9.613428 CCATCCATATTACTTGTTTTGTCTAGA 57.387 33.333 0.00 0.00 0.00 2.43
4488 7476 9.987272 TGTTTTGTCTAGATATGGATGTATCTG 57.013 33.333 0.00 0.00 40.64 2.90
4489 7477 9.988815 GTTTTGTCTAGATATGGATGTATCTGT 57.011 33.333 0.00 0.00 40.64 3.41
4492 7480 9.987272 TTGTCTAGATATGGATGTATCTGTTTG 57.013 33.333 0.00 0.00 40.64 2.93
4511 7499 8.471609 TCTGTTTGATACGGACAAGTAATATGA 58.528 33.333 0.00 0.00 37.22 2.15
4515 7503 8.515473 TTGATACGGACAAGTAATATGAATCG 57.485 34.615 0.00 0.00 0.00 3.34
4520 7508 5.278808 CGGACAAGTAATATGAATCGGAGGA 60.279 44.000 0.00 0.00 0.00 3.71
4528 7516 9.756571 AGTAATATGAATCGGAGGAAGTACTAT 57.243 33.333 0.00 0.00 0.00 2.12
4555 7543 3.966665 ACCATGAACAAATGTGAAAGGGT 59.033 39.130 0.00 0.00 0.00 4.34
4556 7544 4.039124 ACCATGAACAAATGTGAAAGGGTC 59.961 41.667 0.00 0.00 0.00 4.46
4557 7545 4.039004 CCATGAACAAATGTGAAAGGGTCA 59.961 41.667 0.00 0.00 0.00 4.02
4558 7546 4.916983 TGAACAAATGTGAAAGGGTCAG 57.083 40.909 0.00 0.00 36.74 3.51
4559 7547 4.531854 TGAACAAATGTGAAAGGGTCAGA 58.468 39.130 0.00 0.00 36.74 3.27
4560 7548 5.139727 TGAACAAATGTGAAAGGGTCAGAT 58.860 37.500 0.00 0.00 41.89 2.90
4615 7611 4.496895 GCATAACTCATTTGCAGTTTAGCG 59.503 41.667 0.00 0.00 35.63 4.26
4644 7640 9.561069 GTTCCCAAACAGAGATATATTACACAT 57.439 33.333 0.00 0.00 35.36 3.21
4647 7643 9.996554 CCCAAACAGAGATATATTACACATACA 57.003 33.333 0.00 0.00 0.00 2.29
4658 7655 2.568696 ACACATACAGCAGTCTAGCG 57.431 50.000 0.00 0.00 40.15 4.26
4668 7665 0.970937 CAGTCTAGCGGGGAGTTCCA 60.971 60.000 0.00 0.00 37.91 3.53
4676 7673 1.241315 CGGGGAGTTCCAATGCGTTT 61.241 55.000 0.00 0.00 37.91 3.60
4707 7704 7.339212 TCCATGTTTCTAACTTATGTGGAATGG 59.661 37.037 0.00 0.00 0.00 3.16
4709 7706 8.739039 CATGTTTCTAACTTATGTGGAATGGAA 58.261 33.333 0.00 0.00 0.00 3.53
4754 7751 7.106239 TGAAAATAGTCTGGACCAGAAGAATC 58.894 38.462 25.93 17.82 42.46 2.52
4764 7761 5.246656 TGGACCAGAAGAATCCGTTAACTAA 59.753 40.000 3.71 0.00 35.06 2.24
4771 7768 8.879759 CAGAAGAATCCGTTAACTAAATGCTTA 58.120 33.333 3.71 0.00 0.00 3.09
4805 7802 1.048724 CCGGTCTTCAGCCTGGGATA 61.049 60.000 0.00 0.00 0.00 2.59
4815 7812 5.036117 TCAGCCTGGGATATTGTTTCTAC 57.964 43.478 0.00 0.00 0.00 2.59
4818 7815 3.560068 GCCTGGGATATTGTTTCTACGTG 59.440 47.826 0.00 0.00 0.00 4.49
4857 7854 5.584649 CAGGATGTTCGAGGCTAAATTTACA 59.415 40.000 0.00 0.00 0.00 2.41
4875 7872 8.619146 AATTTACATCATTATTTGTCAGTGCG 57.381 30.769 0.00 0.00 0.00 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 4.637276 TCACGATAATATGTCCCGCAAAT 58.363 39.130 0.00 0.00 0.00 2.32
81 82 7.201444 GCTAGAAAATCACGATAATATGTCCCG 60.201 40.741 0.00 0.00 0.00 5.14
201 1368 6.248569 TCCAGGTTACCAGAGATTTTATCC 57.751 41.667 3.51 0.00 0.00 2.59
227 1394 4.970662 TTAGCAAATTGACTCAGATGCC 57.029 40.909 0.00 0.00 34.44 4.40
232 1399 7.330900 AGAATGGATTAGCAAATTGACTCAG 57.669 36.000 0.00 0.00 0.00 3.35
235 1402 7.707624 TGAAGAATGGATTAGCAAATTGACT 57.292 32.000 0.00 0.00 0.00 3.41
397 1564 3.558829 CGGATCGTAGTACTGCTTGAGTA 59.441 47.826 5.39 0.00 35.96 2.59
430 1597 3.967332 TCTGTCTGTGCTGATTGATGA 57.033 42.857 0.00 0.00 0.00 2.92
431 1598 4.251268 TCTTCTGTCTGTGCTGATTGATG 58.749 43.478 0.00 0.00 0.00 3.07
432 1599 4.505808 CTCTTCTGTCTGTGCTGATTGAT 58.494 43.478 0.00 0.00 0.00 2.57
479 1646 4.063967 CCCGCCGTCTGTGCACTA 62.064 66.667 19.41 3.10 0.00 2.74
582 1750 2.992114 ACGGAGAACAGCTCGGCT 60.992 61.111 0.00 0.00 45.09 5.52
786 1954 2.645297 TGACAGGTTGGGGCATTACTTA 59.355 45.455 0.00 0.00 0.00 2.24
790 1958 0.323360 GCTGACAGGTTGGGGCATTA 60.323 55.000 4.26 0.00 0.00 1.90
820 1988 4.007644 CAGACCAGCCTCCACGCA 62.008 66.667 0.00 0.00 0.00 5.24
859 2027 3.443045 GGCCCTCGTTCGTCGGTA 61.443 66.667 0.00 0.00 40.32 4.02
1181 2362 6.091713 TCAAAAGTACTAAGGATAAAGTGCGC 59.908 38.462 0.00 0.00 34.03 6.09
1213 2394 3.372206 CGTGACATTCCAAATCCAGACTC 59.628 47.826 0.00 0.00 0.00 3.36
1316 2497 4.898320 TGCTCTACAGAAATCAGCAAAGA 58.102 39.130 0.00 0.00 37.16 2.52
1329 2510 2.286294 GGATCAACGCATTGCTCTACAG 59.714 50.000 7.12 0.00 35.63 2.74
1345 2526 3.054287 AGAGAGAACTACAGACCGGATCA 60.054 47.826 9.46 0.00 0.00 2.92
1380 2563 4.611366 CGACTTAACGGAACAAATCAAAGC 59.389 41.667 0.00 0.00 0.00 3.51
1384 2570 5.524646 AGAAACGACTTAACGGAACAAATCA 59.475 36.000 0.00 0.00 37.61 2.57
1398 2584 5.723672 TCCACAGATCTAAGAAACGACTT 57.276 39.130 0.00 0.00 0.00 3.01
1400 2586 6.590292 TGAAATCCACAGATCTAAGAAACGAC 59.410 38.462 0.00 0.00 0.00 4.34
1448 2634 2.413310 ATACAGTAAACAAGGCCGGG 57.587 50.000 2.18 0.00 0.00 5.73
1459 2645 9.871175 TCCAGAATATACCACACTATACAGTAA 57.129 33.333 0.00 0.00 32.21 2.24
1461 2647 8.005388 ACTCCAGAATATACCACACTATACAGT 58.995 37.037 0.00 0.00 34.42 3.55
1462 2648 8.410673 ACTCCAGAATATACCACACTATACAG 57.589 38.462 0.00 0.00 0.00 2.74
1463 2649 8.638873 CAACTCCAGAATATACCACACTATACA 58.361 37.037 0.00 0.00 0.00 2.29
1464 2650 8.639761 ACAACTCCAGAATATACCACACTATAC 58.360 37.037 0.00 0.00 0.00 1.47
1465 2651 8.638873 CACAACTCCAGAATATACCACACTATA 58.361 37.037 0.00 0.00 0.00 1.31
1466 2652 7.125811 ACACAACTCCAGAATATACCACACTAT 59.874 37.037 0.00 0.00 0.00 2.12
1513 2705 8.208224 CCCAACAATATACCACACTACTGATAA 58.792 37.037 0.00 0.00 0.00 1.75
1516 2708 5.104693 CCCCAACAATATACCACACTACTGA 60.105 44.000 0.00 0.00 0.00 3.41
1517 2709 5.104693 TCCCCAACAATATACCACACTACTG 60.105 44.000 0.00 0.00 0.00 2.74
1518 2710 5.034200 TCCCCAACAATATACCACACTACT 58.966 41.667 0.00 0.00 0.00 2.57
1519 2711 5.362105 TCCCCAACAATATACCACACTAC 57.638 43.478 0.00 0.00 0.00 2.73
1520 2712 5.072600 GGATCCCCAACAATATACCACACTA 59.927 44.000 0.00 0.00 0.00 2.74
1521 2713 4.141251 GGATCCCCAACAATATACCACACT 60.141 45.833 0.00 0.00 0.00 3.55
1522 2714 4.142038 GGATCCCCAACAATATACCACAC 58.858 47.826 0.00 0.00 0.00 3.82
1523 2715 3.788708 TGGATCCCCAACAATATACCACA 59.211 43.478 9.90 0.00 40.09 4.17
1526 2718 4.652822 GAGTGGATCCCCAACAATATACC 58.347 47.826 9.90 0.00 45.59 2.73
1537 2729 0.461961 CTTCTGTCGAGTGGATCCCC 59.538 60.000 9.90 0.00 0.00 4.81
1556 2748 6.051717 TGACCCGTGAACTATACTAGTACTC 58.948 44.000 4.31 0.92 38.26 2.59
1557 2749 5.994250 TGACCCGTGAACTATACTAGTACT 58.006 41.667 4.31 0.00 38.26 2.73
1558 2750 6.874288 ATGACCCGTGAACTATACTAGTAC 57.126 41.667 4.31 0.00 38.26 2.73
1573 2765 1.338107 TCTCACAGACAATGACCCGT 58.662 50.000 0.00 0.00 0.00 5.28
1576 2768 3.055530 ACCAGATCTCACAGACAATGACC 60.056 47.826 0.00 0.00 0.00 4.02
1587 2779 3.450028 GTGAGGCACCAGATCTCAC 57.550 57.895 6.90 6.90 46.66 3.51
1588 2780 0.900182 ACGTGAGGCACCAGATCTCA 60.900 55.000 0.00 0.00 35.45 3.27
1589 2781 0.247736 AACGTGAGGCACCAGATCTC 59.752 55.000 0.00 0.00 0.00 2.75
1600 2792 2.223377 GGTAAAGAGCACAAACGTGAGG 59.777 50.000 0.00 0.00 36.43 3.86
1602 2794 2.869801 CTGGTAAAGAGCACAAACGTGA 59.130 45.455 0.00 0.00 36.43 4.35
1607 2799 5.239306 CAGATGAACTGGTAAAGAGCACAAA 59.761 40.000 0.00 0.00 42.39 2.83
1610 2802 4.935885 CAGATGAACTGGTAAAGAGCAC 57.064 45.455 0.00 0.00 42.39 4.40
1626 2818 8.001881 ACCTCTACACTATAAACTGACAGATG 57.998 38.462 10.08 0.00 0.00 2.90
1629 2821 8.088981 ACAAACCTCTACACTATAAACTGACAG 58.911 37.037 0.00 0.00 0.00 3.51
1637 2829 9.787435 AAAATGACACAAACCTCTACACTATAA 57.213 29.630 0.00 0.00 0.00 0.98
1640 2832 7.468084 GCAAAAATGACACAAACCTCTACACTA 60.468 37.037 0.00 0.00 0.00 2.74
1641 2833 6.680378 GCAAAAATGACACAAACCTCTACACT 60.680 38.462 0.00 0.00 0.00 3.55
1642 2834 5.458779 GCAAAAATGACACAAACCTCTACAC 59.541 40.000 0.00 0.00 0.00 2.90
1643 2835 5.359576 AGCAAAAATGACACAAACCTCTACA 59.640 36.000 0.00 0.00 0.00 2.74
1644 2836 5.831997 AGCAAAAATGACACAAACCTCTAC 58.168 37.500 0.00 0.00 0.00 2.59
1645 2837 6.096141 TCAAGCAAAAATGACACAAACCTCTA 59.904 34.615 0.00 0.00 0.00 2.43
1646 2838 5.105392 TCAAGCAAAAATGACACAAACCTCT 60.105 36.000 0.00 0.00 0.00 3.69
1647 2839 5.108517 TCAAGCAAAAATGACACAAACCTC 58.891 37.500 0.00 0.00 0.00 3.85
1648 2840 5.083533 TCAAGCAAAAATGACACAAACCT 57.916 34.783 0.00 0.00 0.00 3.50
1649 2841 5.793026 TTCAAGCAAAAATGACACAAACC 57.207 34.783 0.00 0.00 0.00 3.27
1650 2842 7.297391 AGTTTTCAAGCAAAAATGACACAAAC 58.703 30.769 0.00 0.00 35.68 2.93
1651 2843 7.387397 AGAGTTTTCAAGCAAAAATGACACAAA 59.613 29.630 0.00 0.00 35.68 2.83
1656 2848 6.042143 TCCAGAGTTTTCAAGCAAAAATGAC 58.958 36.000 0.00 0.00 35.68 3.06
1657 2849 6.219417 TCCAGAGTTTTCAAGCAAAAATGA 57.781 33.333 0.00 0.00 35.68 2.57
1659 2851 7.059202 AGATCCAGAGTTTTCAAGCAAAAAT 57.941 32.000 0.00 0.00 35.68 1.82
1677 2873 4.721274 TGTCATTGAACCCATCTAGATCCA 59.279 41.667 1.03 0.00 0.00 3.41
1689 2885 5.523916 ACTTCTATGCGTATGTCATTGAACC 59.476 40.000 0.00 0.00 34.07 3.62
1701 2919 2.232696 TGGCACTGAACTTCTATGCGTA 59.767 45.455 10.09 0.00 37.15 4.42
1702 2920 1.001974 TGGCACTGAACTTCTATGCGT 59.998 47.619 10.09 0.00 37.15 5.24
1703 2921 1.662629 CTGGCACTGAACTTCTATGCG 59.337 52.381 10.09 0.00 37.15 4.73
1704 2922 2.704572 ACTGGCACTGAACTTCTATGC 58.295 47.619 8.54 8.54 35.51 3.14
1705 2923 3.438087 CCAACTGGCACTGAACTTCTATG 59.562 47.826 0.00 0.00 0.00 2.23
1706 2924 3.560025 CCCAACTGGCACTGAACTTCTAT 60.560 47.826 0.00 0.00 0.00 1.98
1707 2925 2.224523 CCCAACTGGCACTGAACTTCTA 60.225 50.000 0.00 0.00 0.00 2.10
1708 2926 1.477558 CCCAACTGGCACTGAACTTCT 60.478 52.381 0.00 0.00 0.00 2.85
1709 2927 0.954452 CCCAACTGGCACTGAACTTC 59.046 55.000 0.00 0.00 0.00 3.01
1710 2928 0.550914 TCCCAACTGGCACTGAACTT 59.449 50.000 0.00 0.00 0.00 2.66
1711 2929 0.773644 ATCCCAACTGGCACTGAACT 59.226 50.000 0.00 0.00 0.00 3.01
1712 2930 1.168714 GATCCCAACTGGCACTGAAC 58.831 55.000 0.00 0.00 0.00 3.18
1713 2931 1.067295 AGATCCCAACTGGCACTGAA 58.933 50.000 0.00 0.00 0.00 3.02
1714 2932 0.325933 CAGATCCCAACTGGCACTGA 59.674 55.000 8.40 0.00 38.43 3.41
1715 2933 0.325933 TCAGATCCCAACTGGCACTG 59.674 55.000 0.00 0.00 37.91 3.66
1716 2934 1.067295 TTCAGATCCCAACTGGCACT 58.933 50.000 0.00 0.00 36.22 4.40
1717 2935 1.541588 GTTTCAGATCCCAACTGGCAC 59.458 52.381 0.00 0.00 36.22 5.01
1718 2936 1.144708 TGTTTCAGATCCCAACTGGCA 59.855 47.619 0.00 0.00 36.22 4.92
1719 2937 1.815003 CTGTTTCAGATCCCAACTGGC 59.185 52.381 0.00 0.00 36.22 4.85
1720 2938 1.815003 GCTGTTTCAGATCCCAACTGG 59.185 52.381 0.66 0.00 36.22 4.00
1721 2939 2.507484 TGCTGTTTCAGATCCCAACTG 58.493 47.619 0.66 0.00 32.44 3.16
1722 2940 2.957402 TGCTGTTTCAGATCCCAACT 57.043 45.000 0.66 0.00 32.44 3.16
1723 2941 3.084039 TCATGCTGTTTCAGATCCCAAC 58.916 45.455 0.66 0.00 32.44 3.77
1724 2942 3.349927 CTCATGCTGTTTCAGATCCCAA 58.650 45.455 0.66 0.00 32.44 4.12
1739 2957 4.270566 CAGATCTACAGAAACAGCTCATGC 59.729 45.833 0.00 0.00 40.05 4.06
1744 2962 3.260380 AGCACAGATCTACAGAAACAGCT 59.740 43.478 0.00 0.00 0.00 4.24
1746 2964 5.121454 GGAAAGCACAGATCTACAGAAACAG 59.879 44.000 0.00 0.00 0.00 3.16
1749 2967 5.012046 TCAGGAAAGCACAGATCTACAGAAA 59.988 40.000 0.00 0.00 0.00 2.52
1752 2970 4.462508 TCAGGAAAGCACAGATCTACAG 57.537 45.455 0.00 0.00 0.00 2.74
1769 2987 4.563580 CCACTTAATGGGGATCGTATCAGG 60.564 50.000 0.00 0.00 45.95 3.86
1789 3016 2.030274 GCACAACTGGACCATTTACCAC 60.030 50.000 0.00 0.00 32.44 4.16
1791 3018 2.235016 TGCACAACTGGACCATTTACC 58.765 47.619 0.00 0.00 0.00 2.85
1799 3026 0.729116 CGGATCATGCACAACTGGAC 59.271 55.000 0.00 0.00 0.00 4.02
1817 3044 7.222805 TGCTAACTTGCTATCAGAATTAACTCG 59.777 37.037 0.00 0.00 0.00 4.18
1818 3045 8.425577 TGCTAACTTGCTATCAGAATTAACTC 57.574 34.615 0.00 0.00 0.00 3.01
1819 3046 8.669243 GTTGCTAACTTGCTATCAGAATTAACT 58.331 33.333 0.00 0.00 0.00 2.24
1820 3047 8.669243 AGTTGCTAACTTGCTATCAGAATTAAC 58.331 33.333 0.00 0.00 39.04 2.01
1821 3048 8.792830 AGTTGCTAACTTGCTATCAGAATTAA 57.207 30.769 0.00 0.00 39.04 1.40
1822 3049 9.314321 GTAGTTGCTAACTTGCTATCAGAATTA 57.686 33.333 6.82 0.00 42.81 1.40
1823 3050 7.281100 GGTAGTTGCTAACTTGCTATCAGAATT 59.719 37.037 6.82 0.00 42.81 2.17
1824 3051 6.763610 GGTAGTTGCTAACTTGCTATCAGAAT 59.236 38.462 6.82 0.00 42.81 2.40
1825 3052 6.106673 GGTAGTTGCTAACTTGCTATCAGAA 58.893 40.000 6.82 0.00 42.81 3.02
1826 3053 5.661458 GGTAGTTGCTAACTTGCTATCAGA 58.339 41.667 6.82 0.00 42.81 3.27
1827 3054 4.504461 CGGTAGTTGCTAACTTGCTATCAG 59.496 45.833 6.82 0.00 42.81 2.90
1828 3055 4.158949 TCGGTAGTTGCTAACTTGCTATCA 59.841 41.667 6.82 0.00 42.81 2.15
1829 3056 4.679662 TCGGTAGTTGCTAACTTGCTATC 58.320 43.478 6.82 0.00 42.81 2.08
1830 3057 4.730949 TCGGTAGTTGCTAACTTGCTAT 57.269 40.909 6.82 0.00 42.81 2.97
1831 3058 4.730949 ATCGGTAGTTGCTAACTTGCTA 57.269 40.909 6.82 0.00 42.81 3.49
1832 3059 3.611766 ATCGGTAGTTGCTAACTTGCT 57.388 42.857 6.82 0.00 42.81 3.91
1833 3060 3.435671 ACAATCGGTAGTTGCTAACTTGC 59.564 43.478 6.82 0.00 42.81 4.01
1834 3061 5.607119 AACAATCGGTAGTTGCTAACTTG 57.393 39.130 6.82 2.21 42.81 3.16
1835 3062 6.225318 TGTAACAATCGGTAGTTGCTAACTT 58.775 36.000 6.82 0.00 42.81 2.66
1836 3063 5.786311 TGTAACAATCGGTAGTTGCTAACT 58.214 37.500 6.74 6.74 45.40 2.24
1837 3064 6.507456 CGATGTAACAATCGGTAGTTGCTAAC 60.507 42.308 0.00 0.00 44.49 2.34
1838 3065 5.517411 CGATGTAACAATCGGTAGTTGCTAA 59.483 40.000 0.00 0.00 44.49 3.09
1839 3066 5.038683 CGATGTAACAATCGGTAGTTGCTA 58.961 41.667 0.00 0.00 44.49 3.49
1840 3067 3.863424 CGATGTAACAATCGGTAGTTGCT 59.137 43.478 0.00 0.00 44.49 3.91
1841 3068 4.178156 CGATGTAACAATCGGTAGTTGC 57.822 45.455 0.00 0.00 44.49 4.17
1850 3077 8.333186 GGAACATAAGTAACCGATGTAACAATC 58.667 37.037 0.00 0.00 33.48 2.67
1851 3078 8.044908 AGGAACATAAGTAACCGATGTAACAAT 58.955 33.333 0.00 0.00 33.48 2.71
1857 3084 6.325545 TGGATAGGAACATAAGTAACCGATGT 59.674 38.462 0.00 0.00 35.32 3.06
1858 3085 6.755206 TGGATAGGAACATAAGTAACCGATG 58.245 40.000 0.00 0.00 32.13 3.84
1863 3090 6.651225 GGAGCATGGATAGGAACATAAGTAAC 59.349 42.308 0.00 0.00 0.00 2.50
1866 3093 4.660303 TGGAGCATGGATAGGAACATAAGT 59.340 41.667 0.00 0.00 0.00 2.24
1871 3098 5.549228 AGATATTGGAGCATGGATAGGAACA 59.451 40.000 0.00 0.00 0.00 3.18
1872 3099 5.879223 CAGATATTGGAGCATGGATAGGAAC 59.121 44.000 0.00 0.00 0.00 3.62
1875 3102 5.688814 TCAGATATTGGAGCATGGATAGG 57.311 43.478 0.00 0.00 0.00 2.57
1889 3116 9.011095 CCAGAGATTGCAACAATATCAGATATT 57.989 33.333 15.10 9.58 35.92 1.28
1890 3117 8.162085 ACCAGAGATTGCAACAATATCAGATAT 58.838 33.333 15.10 0.00 0.00 1.63
1891 3118 7.443272 CACCAGAGATTGCAACAATATCAGATA 59.557 37.037 15.10 0.00 0.00 1.98
1892 3119 6.262496 CACCAGAGATTGCAACAATATCAGAT 59.738 38.462 15.10 0.00 0.00 2.90
1893 3120 5.587443 CACCAGAGATTGCAACAATATCAGA 59.413 40.000 15.10 0.00 0.00 3.27
1894 3121 5.356190 ACACCAGAGATTGCAACAATATCAG 59.644 40.000 15.10 8.49 0.00 2.90
1895 3122 5.255687 ACACCAGAGATTGCAACAATATCA 58.744 37.500 15.10 0.00 0.00 2.15
1896 3123 5.824904 ACACCAGAGATTGCAACAATATC 57.175 39.130 0.00 6.80 0.00 1.63
1897 3124 7.701539 TTAACACCAGAGATTGCAACAATAT 57.298 32.000 0.00 0.00 0.00 1.28
1898 3125 7.701539 ATTAACACCAGAGATTGCAACAATA 57.298 32.000 0.00 0.00 0.00 1.90
1899 3126 6.594788 ATTAACACCAGAGATTGCAACAAT 57.405 33.333 0.00 0.00 0.00 2.71
1910 3137 4.496341 CGCATAGCCAAATTAACACCAGAG 60.496 45.833 0.00 0.00 0.00 3.35
1915 3142 4.495844 GGAGACGCATAGCCAAATTAACAC 60.496 45.833 0.00 0.00 0.00 3.32
1917 3144 3.003378 GGGAGACGCATAGCCAAATTAAC 59.997 47.826 0.00 0.00 0.00 2.01
1928 3155 2.093658 GGAAACAGAAGGGAGACGCATA 60.094 50.000 0.00 0.00 0.00 3.14
2361 3588 7.907389 ACCATAAGAGTTCAGTAAGTGATGAA 58.093 34.615 0.00 0.00 34.17 2.57
2396 3623 9.613428 CACACTCTAATGGAATAAACAGGATTA 57.387 33.333 0.00 0.00 0.00 1.75
2422 3649 2.264813 CCACATAAGCTTGCACAATGC 58.735 47.619 9.86 0.00 45.29 3.56
2423 3650 3.247442 CACCACATAAGCTTGCACAATG 58.753 45.455 9.86 6.92 0.00 2.82
2424 3651 2.892852 ACACCACATAAGCTTGCACAAT 59.107 40.909 9.86 0.00 0.00 2.71
2425 3652 2.293122 GACACCACATAAGCTTGCACAA 59.707 45.455 9.86 0.00 0.00 3.33
2472 3701 3.876914 ACCATCACAACACTATTATGGCG 59.123 43.478 0.00 0.00 37.91 5.69
2510 3739 4.021925 GTTCGACTGGCAGGCCCT 62.022 66.667 20.34 0.00 34.56 5.19
2515 3744 0.250295 TCCAAAGGTTCGACTGGCAG 60.250 55.000 14.16 14.16 0.00 4.85
2516 3745 0.181587 TTCCAAAGGTTCGACTGGCA 59.818 50.000 0.00 0.00 0.00 4.92
2517 3746 1.534729 ATTCCAAAGGTTCGACTGGC 58.465 50.000 0.00 0.00 0.00 4.85
2518 3747 5.897377 AAATATTCCAAAGGTTCGACTGG 57.103 39.130 0.00 0.00 0.00 4.00
2519 3748 7.372451 TGTAAATATTCCAAAGGTTCGACTG 57.628 36.000 0.00 0.00 0.00 3.51
2520 3749 7.610305 ACATGTAAATATTCCAAAGGTTCGACT 59.390 33.333 0.00 0.00 0.00 4.18
2521 3750 7.758495 ACATGTAAATATTCCAAAGGTTCGAC 58.242 34.615 0.00 0.00 0.00 4.20
2522 3751 7.066525 GGACATGTAAATATTCCAAAGGTTCGA 59.933 37.037 0.00 0.00 0.00 3.71
2523 3752 7.193595 GGACATGTAAATATTCCAAAGGTTCG 58.806 38.462 0.00 0.00 0.00 3.95
2524 3753 7.193595 CGGACATGTAAATATTCCAAAGGTTC 58.806 38.462 0.00 0.00 0.00 3.62
2525 3754 6.096282 CCGGACATGTAAATATTCCAAAGGTT 59.904 38.462 0.00 0.00 0.00 3.50
2557 3786 9.547753 GGCCGACAATCTGATATTATGTATAAT 57.452 33.333 0.00 2.96 36.89 1.28
2561 3797 5.247337 TGGGCCGACAATCTGATATTATGTA 59.753 40.000 0.00 0.00 0.00 2.29
2562 3798 4.041567 TGGGCCGACAATCTGATATTATGT 59.958 41.667 0.00 0.00 0.00 2.29
2563 3799 4.393062 GTGGGCCGACAATCTGATATTATG 59.607 45.833 13.75 0.00 0.00 1.90
2567 3803 1.072331 GGTGGGCCGACAATCTGATAT 59.928 52.381 20.36 0.00 0.00 1.63
2568 3804 0.468226 GGTGGGCCGACAATCTGATA 59.532 55.000 20.36 0.00 0.00 2.15
2569 3805 1.224592 GGTGGGCCGACAATCTGAT 59.775 57.895 20.36 0.00 0.00 2.90
2637 3901 8.008513 ACAATTATTGTCGACCACTAGACTAT 57.991 34.615 14.12 0.00 40.56 2.12
2708 3974 4.389374 ACTTGCTAAGCACTTAAGCAGAA 58.611 39.130 1.29 2.69 38.71 3.02
2710 3976 3.999663 AGACTTGCTAAGCACTTAAGCAG 59.000 43.478 1.29 0.00 38.71 4.24
2712 3978 3.425492 GCAGACTTGCTAAGCACTTAAGC 60.425 47.826 1.29 0.00 46.95 3.09
2762 4165 5.100259 CAGCACAGGCATGAAAAAGAATAG 58.900 41.667 4.84 0.00 44.61 1.73
2767 4170 2.806608 ACAGCACAGGCATGAAAAAG 57.193 45.000 4.84 0.00 44.61 2.27
3062 4611 5.971763 AGAGTCCTGAAACAGATGTCATAC 58.028 41.667 0.00 0.00 32.44 2.39
3131 4681 8.267894 TCCAAAGAAGACAGGAGAAATAATAGG 58.732 37.037 0.00 0.00 0.00 2.57
3173 5254 5.618640 GCACAAAACAAGCAAACATGGAAAA 60.619 36.000 0.00 0.00 0.00 2.29
3174 5255 4.142730 GCACAAAACAAGCAAACATGGAAA 60.143 37.500 0.00 0.00 0.00 3.13
3453 6242 1.600107 GGTGAGGTAACGGCCATGA 59.400 57.895 2.24 0.00 46.39 3.07
3825 6614 1.748122 GTACTCGCCCTCCTCGTCA 60.748 63.158 0.00 0.00 0.00 4.35
3887 6679 0.534877 AGCAAAGCACGACATGGACA 60.535 50.000 0.00 0.00 0.00 4.02
3896 6688 3.673484 CCCACCCAGCAAAGCACG 61.673 66.667 0.00 0.00 0.00 5.34
4020 6814 6.299141 AGGTGCCATAACATAGGAAATACAG 58.701 40.000 0.00 0.00 0.00 2.74
4072 6879 1.732259 CCTCAACACAGAACATACCGC 59.268 52.381 0.00 0.00 0.00 5.68
4100 6907 3.307269 CCTGAATTCAGCACCAGAGAGAA 60.307 47.826 27.01 0.00 42.47 2.87
4101 6908 2.235650 CCTGAATTCAGCACCAGAGAGA 59.764 50.000 27.01 0.00 42.47 3.10
4119 6926 5.006386 AGAAATACCAACTCAGAAAGCCTG 58.994 41.667 0.00 0.00 44.27 4.85
4120 6927 5.006386 CAGAAATACCAACTCAGAAAGCCT 58.994 41.667 0.00 0.00 0.00 4.58
4121 6928 4.379918 GCAGAAATACCAACTCAGAAAGCC 60.380 45.833 0.00 0.00 0.00 4.35
4122 6929 4.670221 CGCAGAAATACCAACTCAGAAAGC 60.670 45.833 0.00 0.00 0.00 3.51
4123 6930 4.142816 CCGCAGAAATACCAACTCAGAAAG 60.143 45.833 0.00 0.00 0.00 2.62
4124 6931 3.751175 CCGCAGAAATACCAACTCAGAAA 59.249 43.478 0.00 0.00 0.00 2.52
4143 6950 6.413818 CCAGAATTCGACAAAATAATTACCGC 59.586 38.462 0.00 0.00 0.00 5.68
4144 6951 6.910433 CCCAGAATTCGACAAAATAATTACCG 59.090 38.462 0.00 0.00 0.00 4.02
4145 6952 7.700656 CACCCAGAATTCGACAAAATAATTACC 59.299 37.037 0.00 0.00 0.00 2.85
4146 6953 7.220108 GCACCCAGAATTCGACAAAATAATTAC 59.780 37.037 0.00 0.00 0.00 1.89
4147 6954 7.094162 TGCACCCAGAATTCGACAAAATAATTA 60.094 33.333 0.00 0.00 0.00 1.40
4149 6956 5.184864 TGCACCCAGAATTCGACAAAATAAT 59.815 36.000 0.00 0.00 0.00 1.28
4151 6958 4.075682 TGCACCCAGAATTCGACAAAATA 58.924 39.130 0.00 0.00 0.00 1.40
4152 6959 2.890311 TGCACCCAGAATTCGACAAAAT 59.110 40.909 0.00 0.00 0.00 1.82
4155 6962 2.083774 GATGCACCCAGAATTCGACAA 58.916 47.619 0.00 0.00 0.00 3.18
4156 6963 1.003003 TGATGCACCCAGAATTCGACA 59.997 47.619 0.00 0.00 0.00 4.35
4157 6964 1.737838 TGATGCACCCAGAATTCGAC 58.262 50.000 0.00 0.00 0.00 4.20
4158 6965 2.291365 CATGATGCACCCAGAATTCGA 58.709 47.619 0.00 0.00 0.00 3.71
4159 6966 1.335810 CCATGATGCACCCAGAATTCG 59.664 52.381 0.00 0.00 0.00 3.34
4162 6969 2.381911 GAACCATGATGCACCCAGAAT 58.618 47.619 0.00 0.00 0.00 2.40
4164 6971 0.034186 GGAACCATGATGCACCCAGA 60.034 55.000 0.00 0.00 0.00 3.86
4165 6972 0.323633 TGGAACCATGATGCACCCAG 60.324 55.000 0.00 0.00 0.00 4.45
4166 6973 0.113972 TTGGAACCATGATGCACCCA 59.886 50.000 0.00 0.00 0.00 4.51
4167 6974 0.532115 GTTGGAACCATGATGCACCC 59.468 55.000 0.00 0.00 0.00 4.61
4175 6984 8.443533 TTGAGAATTCACTAGGTTGGAACCATG 61.444 40.741 8.44 6.29 41.51 3.66
4187 6996 4.187694 GAGGCCACTTGAGAATTCACTAG 58.812 47.826 5.01 10.26 31.71 2.57
4190 6999 1.734465 CGAGGCCACTTGAGAATTCAC 59.266 52.381 5.01 1.50 31.71 3.18
4191 7000 1.339055 CCGAGGCCACTTGAGAATTCA 60.339 52.381 5.01 0.00 0.00 2.57
4224 7044 2.521958 ATCACAGCACGCCAGGGTAC 62.522 60.000 0.00 0.00 0.00 3.34
4225 7045 2.290287 ATCACAGCACGCCAGGGTA 61.290 57.895 0.00 0.00 0.00 3.69
4226 7046 3.640407 ATCACAGCACGCCAGGGT 61.640 61.111 0.00 0.00 0.00 4.34
4228 7048 3.807538 GCATCACAGCACGCCAGG 61.808 66.667 0.00 0.00 0.00 4.45
4229 7049 3.807538 GGCATCACAGCACGCCAG 61.808 66.667 0.00 0.00 44.25 4.85
4231 7051 3.503363 GAGGCATCACAGCACGCC 61.503 66.667 0.00 0.00 45.23 5.68
4233 7053 1.079612 TGAGAGGCATCACAGCACG 60.080 57.895 0.00 0.00 35.83 5.34
4251 7168 1.802960 CAGAGCAGAAACAATGAGCGT 59.197 47.619 0.00 0.00 0.00 5.07
4261 7178 9.539825 GAAAACTCATATATCTCAGAGCAGAAA 57.460 33.333 0.00 0.00 0.00 2.52
4276 7193 8.166422 ACCGTTTCAAAGAAGAAAACTCATAT 57.834 30.769 0.00 0.00 39.05 1.78
4290 7278 1.904287 TCCCCATGACCGTTTCAAAG 58.096 50.000 0.00 0.00 37.92 2.77
4299 7287 1.076705 GGGAGCTTTCCCCATGACC 60.077 63.158 4.06 0.00 44.18 4.02
4312 7300 3.002348 CGAAATATTTTCAGGTCGGGAGC 59.998 47.826 1.43 0.00 0.00 4.70
4333 7321 8.438676 AGTTACTATCCATCAATTTCCTTTCG 57.561 34.615 0.00 0.00 0.00 3.46
4340 7328 7.127955 AGGTCAGGAGTTACTATCCATCAATTT 59.872 37.037 0.00 0.00 39.47 1.82
4349 7337 6.325919 CTCATGAGGTCAGGAGTTACTATC 57.674 45.833 15.38 0.00 46.27 2.08
4377 7365 9.624697 GTAATGAGCATGAGTGTTTGAAATAAA 57.375 29.630 0.00 0.00 0.00 1.40
4384 7372 4.696877 TCCTGTAATGAGCATGAGTGTTTG 59.303 41.667 0.00 0.00 0.00 2.93
4393 7381 5.079643 AGTTGGTTTTCCTGTAATGAGCAT 58.920 37.500 0.00 0.00 41.38 3.79
4394 7382 4.469657 AGTTGGTTTTCCTGTAATGAGCA 58.530 39.130 0.00 0.00 41.38 4.26
4395 7383 6.759497 ATAGTTGGTTTTCCTGTAATGAGC 57.241 37.500 0.00 0.00 41.38 4.26
4403 7391 5.711976 ACCTCATGAATAGTTGGTTTTCCTG 59.288 40.000 0.00 0.00 41.38 3.86
4415 7403 9.416794 GTATTGTACATCAGACCTCATGAATAG 57.583 37.037 0.00 0.00 0.00 1.73
4428 7416 3.967326 TGGGAGGGAGTATTGTACATCAG 59.033 47.826 0.00 0.00 0.00 2.90
4438 7426 6.185677 AGTAATATGGATGGGAGGGAGTAT 57.814 41.667 0.00 0.00 0.00 2.12
4447 7435 7.645058 AGACAAAACAAGTAATATGGATGGG 57.355 36.000 0.00 0.00 0.00 4.00
4467 7455 9.367160 TCAAACAGATACATCCATATCTAGACA 57.633 33.333 0.00 0.00 39.44 3.41
4484 7472 9.261180 CATATTACTTGTCCGTATCAAACAGAT 57.739 33.333 0.00 0.00 40.86 2.90
4485 7473 8.471609 TCATATTACTTGTCCGTATCAAACAGA 58.528 33.333 0.00 0.00 0.00 3.41
4487 7475 9.607988 ATTCATATTACTTGTCCGTATCAAACA 57.392 29.630 0.00 0.00 0.00 2.83
4489 7477 8.974408 CGATTCATATTACTTGTCCGTATCAAA 58.026 33.333 0.00 0.00 0.00 2.69
4491 7479 7.040271 TCCGATTCATATTACTTGTCCGTATCA 60.040 37.037 0.00 0.00 0.00 2.15
4492 7480 7.310664 TCCGATTCATATTACTTGTCCGTATC 58.689 38.462 0.00 0.00 0.00 2.24
4494 7482 6.294342 CCTCCGATTCATATTACTTGTCCGTA 60.294 42.308 0.00 0.00 0.00 4.02
4495 7483 5.509163 CCTCCGATTCATATTACTTGTCCGT 60.509 44.000 0.00 0.00 0.00 4.69
4496 7484 4.923871 CCTCCGATTCATATTACTTGTCCG 59.076 45.833 0.00 0.00 0.00 4.79
4497 7485 6.097915 TCCTCCGATTCATATTACTTGTCC 57.902 41.667 0.00 0.00 0.00 4.02
4500 7488 8.361139 AGTACTTCCTCCGATTCATATTACTTG 58.639 37.037 0.00 0.00 0.00 3.16
4511 7499 7.293073 TGGTAAGTATAGTACTTCCTCCGATT 58.707 38.462 0.00 0.00 45.38 3.34
4515 7503 8.358895 GTTCATGGTAAGTATAGTACTTCCTCC 58.641 40.741 0.00 8.09 45.38 4.30
4528 7516 7.040062 CCCTTTCACATTTGTTCATGGTAAGTA 60.040 37.037 0.00 0.00 0.00 2.24
4533 7521 3.966665 ACCCTTTCACATTTGTTCATGGT 59.033 39.130 0.00 0.00 0.00 3.55
4555 7543 3.581101 CATCCTCCTACCCAGAATCTGA 58.419 50.000 12.53 0.00 32.44 3.27
4556 7544 2.038295 GCATCCTCCTACCCAGAATCTG 59.962 54.545 2.68 2.68 0.00 2.90
4557 7545 2.334023 GCATCCTCCTACCCAGAATCT 58.666 52.381 0.00 0.00 0.00 2.40
4558 7546 2.050144 TGCATCCTCCTACCCAGAATC 58.950 52.381 0.00 0.00 0.00 2.52
4559 7547 2.196742 TGCATCCTCCTACCCAGAAT 57.803 50.000 0.00 0.00 0.00 2.40
4560 7548 2.196742 ATGCATCCTCCTACCCAGAA 57.803 50.000 0.00 0.00 0.00 3.02
4610 7606 1.695242 TCTGTTTGGGAACTCCGCTAA 59.305 47.619 0.00 0.00 38.76 3.09
4615 7611 8.429641 TGTAATATATCTCTGTTTGGGAACTCC 58.570 37.037 0.00 0.00 36.70 3.85
4644 7640 0.752009 CTCCCCGCTAGACTGCTGTA 60.752 60.000 0.00 0.00 0.00 2.74
4645 7641 2.037367 TCCCCGCTAGACTGCTGT 59.963 61.111 0.00 0.00 0.00 4.40
4646 7642 1.608717 AACTCCCCGCTAGACTGCTG 61.609 60.000 0.00 0.00 0.00 4.41
4647 7643 1.305381 AACTCCCCGCTAGACTGCT 60.305 57.895 0.00 0.00 0.00 4.24
4648 7644 1.142097 GAACTCCCCGCTAGACTGC 59.858 63.158 0.00 0.00 0.00 4.40
4658 7655 0.966179 AAAACGCATTGGAACTCCCC 59.034 50.000 0.00 0.00 34.29 4.81
4689 7686 9.527157 TGAAAATTCCATTCCACATAAGTTAGA 57.473 29.630 0.00 0.00 0.00 2.10
4698 7695 9.618890 TTGTTAATTTGAAAATTCCATTCCACA 57.381 25.926 4.34 0.00 39.24 4.17
4742 7739 7.676572 GCATTTAGTTAACGGATTCTTCTGGTC 60.677 40.741 0.00 0.00 32.05 4.02
4771 7768 6.056884 TGAAGACCGGTACTTTGTAAATGTT 58.943 36.000 7.34 0.00 35.64 2.71
4786 7783 1.048724 TATCCCAGGCTGAAGACCGG 61.049 60.000 17.94 7.53 0.00 5.28
4805 7802 4.072131 AGCACAATCCACGTAGAAACAAT 58.928 39.130 0.00 0.00 0.00 2.71
4815 7812 3.389741 GCTTGAAGCACAATCCACG 57.610 52.632 13.09 0.00 41.89 4.94
4857 7854 5.980698 CTCTCGCACTGACAAATAATGAT 57.019 39.130 0.00 0.00 0.00 2.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.