Multiple sequence alignment - TraesCS3D01G326500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G326500 chr3D 100.000 2518 0 0 1 2518 438605264 438602747 0.000000e+00 4650.0
1 TraesCS3D01G326500 chr3D 96.815 157 4 1 786 941 213390541 213390697 6.910000e-66 261.0
2 TraesCS3D01G326500 chr3D 86.538 104 12 2 70 171 438569302 438569199 2.050000e-21 113.0
3 TraesCS3D01G326500 chr3D 100.000 60 0 0 934 993 154772549 154772490 7.360000e-21 111.0
4 TraesCS3D01G326500 chr3D 100.000 60 0 0 934 993 238069246 238069187 7.360000e-21 111.0
5 TraesCS3D01G326500 chr3D 98.276 58 1 0 2461 2518 438598758 438598815 4.430000e-18 102.0
6 TraesCS3D01G326500 chr5B 88.014 876 77 15 991 1845 612015087 612014219 0.000000e+00 1011.0
7 TraesCS3D01G326500 chr5B 83.893 745 68 20 35 755 612015841 612015125 0.000000e+00 664.0
8 TraesCS3D01G326500 chr5B 81.852 270 32 10 2199 2460 612013828 612013568 7.060000e-51 211.0
9 TraesCS3D01G326500 chr5B 100.000 37 0 0 1 37 612015906 612015870 4.490000e-08 69.4
10 TraesCS3D01G326500 chr5D 88.625 800 78 9 1024 1816 495373539 495372746 0.000000e+00 961.0
11 TraesCS3D01G326500 chr5D 84.806 283 24 8 275 549 495380717 495380446 1.480000e-67 267.0
12 TraesCS3D01G326500 chr5D 89.634 164 12 4 589 749 495380447 495380286 1.180000e-48 204.0
13 TraesCS3D01G326500 chr5D 89.634 164 11 2 31 189 495380891 495380729 1.180000e-48 204.0
14 TraesCS3D01G326500 chr5D 100.000 60 0 0 934 993 48415726 48415667 7.360000e-21 111.0
15 TraesCS3D01G326500 chr5D 97.619 42 1 0 1870 1911 495369284 495369243 3.470000e-09 73.1
16 TraesCS3D01G326500 chr5D 100.000 34 0 0 4 37 495380948 495380915 2.090000e-06 63.9
17 TraesCS3D01G326500 chr5A 86.147 693 61 15 991 1676 619476650 619475986 0.000000e+00 715.0
18 TraesCS3D01G326500 chr5A 82.956 751 82 32 31 755 619477412 619476682 9.820000e-179 636.0
19 TraesCS3D01G326500 chr5A 90.049 412 34 4 1730 2139 619475992 619475586 6.170000e-146 527.0
20 TraesCS3D01G326500 chr5A 85.990 207 27 2 1941 2145 619470582 619470376 1.170000e-53 220.0
21 TraesCS3D01G326500 chr5A 89.308 159 8 3 2302 2460 619475413 619475264 9.190000e-45 191.0
22 TraesCS3D01G326500 chr1D 85.185 594 84 2 1001 1590 17193966 17193373 7.700000e-170 606.0
23 TraesCS3D01G326500 chr1A 86.034 537 65 7 1001 1527 18487023 18486487 3.640000e-158 568.0
24 TraesCS3D01G326500 chr1A 96.875 64 1 1 2455 2518 557114088 557114026 3.430000e-19 106.0
25 TraesCS3D01G326500 chr1A 98.276 58 1 0 2461 2518 97274295 97274238 4.430000e-18 102.0
26 TraesCS3D01G326500 chr1A 96.552 58 2 0 2461 2518 557108407 557108464 2.060000e-16 97.1
27 TraesCS3D01G326500 chr1B 84.091 572 74 11 1001 1556 24989051 24988481 1.030000e-148 536.0
28 TraesCS3D01G326500 chr1B 98.089 157 2 1 786 941 619193507 619193663 3.190000e-69 272.0
29 TraesCS3D01G326500 chr3A 98.089 157 2 1 786 941 482776294 482776450 3.190000e-69 272.0
30 TraesCS3D01G326500 chr3A 91.525 59 5 0 2460 2518 61213854 61213796 5.770000e-12 82.4
31 TraesCS3D01G326500 chr2B 98.089 157 2 1 786 941 234539336 234539492 3.190000e-69 272.0
32 TraesCS3D01G326500 chrUn 97.452 157 3 1 786 941 217909491 217909335 1.480000e-67 267.0
33 TraesCS3D01G326500 chr6A 97.452 157 3 1 786 941 597251172 597251328 1.480000e-67 267.0
34 TraesCS3D01G326500 chr4D 97.452 157 3 1 786 941 123447156 123447312 1.480000e-67 267.0
35 TraesCS3D01G326500 chr4D 100.000 60 0 0 934 993 123304820 123304761 7.360000e-21 111.0
36 TraesCS3D01G326500 chr4D 100.000 60 0 0 934 993 123648392 123648333 7.360000e-21 111.0
37 TraesCS3D01G326500 chr4A 97.452 157 3 1 786 941 67521322 67521166 1.480000e-67 267.0
38 TraesCS3D01G326500 chr3B 97.452 157 3 1 786 941 6008943 6009099 1.480000e-67 267.0
39 TraesCS3D01G326500 chr3B 97.452 157 3 1 786 941 92294909 92295065 1.480000e-67 267.0
40 TraesCS3D01G326500 chr7D 100.000 60 0 0 934 993 381988905 381988846 7.360000e-21 111.0
41 TraesCS3D01G326500 chr7D 100.000 60 0 0 934 993 626669102 626669043 7.360000e-21 111.0
42 TraesCS3D01G326500 chr2D 100.000 60 0 0 934 993 200899702 200899643 7.360000e-21 111.0
43 TraesCS3D01G326500 chr7A 96.970 66 1 1 928 993 571660288 571660224 2.650000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G326500 chr3D 438602747 438605264 2517 True 4650.00 4650 100.00000 1 2518 1 chr3D.!!$R4 2517
1 TraesCS3D01G326500 chr5B 612013568 612015906 2338 True 488.85 1011 88.43975 1 2460 4 chr5B.!!$R1 2459
2 TraesCS3D01G326500 chr5D 495369243 495373539 4296 True 517.05 961 93.12200 1024 1911 2 chr5D.!!$R2 887
3 TraesCS3D01G326500 chr5A 619475264 619477412 2148 True 517.25 715 87.11500 31 2460 4 chr5A.!!$R2 2429
4 TraesCS3D01G326500 chr1D 17193373 17193966 593 True 606.00 606 85.18500 1001 1590 1 chr1D.!!$R1 589
5 TraesCS3D01G326500 chr1A 18486487 18487023 536 True 568.00 568 86.03400 1001 1527 1 chr1A.!!$R1 526
6 TraesCS3D01G326500 chr1B 24988481 24989051 570 True 536.00 536 84.09100 1001 1556 1 chr1B.!!$R1 555

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
829 913 0.035739 CGAGGGGACGGGAAAAGAAA 59.964 55.0 0.0 0.0 0.0 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2201 6028 0.178975 TGTGACCAAACATGACCCCC 60.179 55.0 0.0 0.0 0.0 5.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
85 117 2.041244 GTGCGTGTTTCAAATTCCGAC 58.959 47.619 0.00 0.00 0.00 4.79
94 126 2.778299 TCAAATTCCGACCCTTCACAG 58.222 47.619 0.00 0.00 0.00 3.66
129 187 4.384208 CCCGGTTGAGAACAGAGGATAATT 60.384 45.833 0.00 0.00 0.00 1.40
167 228 2.483583 TTTACTGTTGGCTGTTTGCG 57.516 45.000 0.00 0.00 44.05 4.85
183 244 0.386352 TGCGTTCGTCTACTGGTTCG 60.386 55.000 0.00 0.00 0.00 3.95
190 251 4.566545 TCGTCTACTGGTTCGTTTTGTA 57.433 40.909 0.00 0.00 0.00 2.41
210 271 4.897076 TGTAGTGTTGAGACTTGGGTAGAA 59.103 41.667 0.00 0.00 0.00 2.10
249 310 5.936956 GCAAAAGAAGAGGATCAAGAGAAGA 59.063 40.000 0.00 0.00 37.82 2.87
277 338 8.284693 GTGTTGAATTTTATGCATTTCAGCTTT 58.715 29.630 19.77 2.73 32.56 3.51
336 401 8.902540 TCATGTCTTGTATTACTGTGAACTTT 57.097 30.769 0.00 0.00 0.00 2.66
355 420 9.076781 TGAACTTTCATTTCTCATATTGTTCCA 57.923 29.630 0.00 0.00 31.97 3.53
375 440 4.955450 TCCAACCATAACCTGATTGAATGG 59.045 41.667 0.00 0.00 42.32 3.16
380 445 4.441913 CCATAACCTGATTGAATGGTTGCC 60.442 45.833 9.46 0.00 43.12 4.52
412 477 4.261322 GCTGAAGATGAGCAAAACAGACAA 60.261 41.667 0.00 0.00 36.40 3.18
413 478 5.173774 TGAAGATGAGCAAAACAGACAAC 57.826 39.130 0.00 0.00 0.00 3.32
420 485 1.065551 GCAAAACAGACAACGGCTTCT 59.934 47.619 0.00 0.00 0.00 2.85
455 520 1.134907 GCCCAGCCAATCATCAACTTG 60.135 52.381 0.00 0.00 0.00 3.16
459 524 3.379372 CCAGCCAATCATCAACTTGGTAG 59.621 47.826 3.51 0.00 43.18 3.18
467 540 3.691118 TCATCAACTTGGTAGCAATGCTC 59.309 43.478 12.53 3.42 40.44 4.26
471 544 0.376152 CTTGGTAGCAATGCTCGCTG 59.624 55.000 12.53 0.00 40.73 5.18
478 551 2.842457 AGCAATGCTCGCTGAATATGA 58.158 42.857 0.00 0.00 38.60 2.15
503 576 5.676079 GCAAAACACTCTGTTACTTGCTTGA 60.676 40.000 13.57 0.00 44.41 3.02
504 577 6.321717 CAAAACACTCTGTTACTTGCTTGAA 58.678 36.000 0.00 0.00 40.14 2.69
506 579 5.679734 ACACTCTGTTACTTGCTTGAATG 57.320 39.130 0.00 0.00 0.00 2.67
507 580 5.126067 ACACTCTGTTACTTGCTTGAATGT 58.874 37.500 0.00 0.00 0.00 2.71
508 581 5.590259 ACACTCTGTTACTTGCTTGAATGTT 59.410 36.000 0.00 0.00 0.00 2.71
509 582 6.138761 CACTCTGTTACTTGCTTGAATGTTC 58.861 40.000 0.00 0.00 0.00 3.18
510 583 5.822519 ACTCTGTTACTTGCTTGAATGTTCA 59.177 36.000 0.00 0.00 34.92 3.18
511 584 6.488006 ACTCTGTTACTTGCTTGAATGTTCAT 59.512 34.615 0.00 0.00 37.00 2.57
512 585 6.902341 TCTGTTACTTGCTTGAATGTTCATC 58.098 36.000 0.00 0.00 37.00 2.92
513 586 6.712095 TCTGTTACTTGCTTGAATGTTCATCT 59.288 34.615 0.00 0.00 37.00 2.90
514 587 6.671190 TGTTACTTGCTTGAATGTTCATCTG 58.329 36.000 0.00 0.00 37.00 2.90
520 593 4.937620 TGCTTGAATGTTCATCTGAGTACC 59.062 41.667 0.00 0.00 37.00 3.34
524 597 6.275494 TGAATGTTCATCTGAGTACCGTAA 57.725 37.500 0.00 0.00 31.01 3.18
526 599 7.327975 TGAATGTTCATCTGAGTACCGTAAAT 58.672 34.615 0.00 0.00 31.01 1.40
528 601 7.772332 ATGTTCATCTGAGTACCGTAAATTC 57.228 36.000 0.00 0.00 0.00 2.17
550 623 1.102154 TGTGCAGACAAGGTGTTTGG 58.898 50.000 0.00 0.00 41.25 3.28
558 631 5.681179 GCAGACAAGGTGTTTGGTTAAATGT 60.681 40.000 1.67 0.00 41.25 2.71
559 632 6.337356 CAGACAAGGTGTTTGGTTAAATGTT 58.663 36.000 0.00 0.00 41.25 2.71
563 636 7.039270 ACAAGGTGTTTGGTTAAATGTTTCTC 58.961 34.615 0.00 0.00 41.25 2.87
577 650 5.814764 ATGTTTCTCAGATGAACATCAGC 57.185 39.130 15.63 0.00 40.22 4.26
578 651 4.005650 TGTTTCTCAGATGAACATCAGCC 58.994 43.478 15.63 0.00 40.22 4.85
581 654 1.489649 CTCAGATGAACATCAGCCCCT 59.510 52.381 15.63 0.00 40.22 4.79
585 658 3.882822 AGATGAACATCAGCCCCTAGGC 61.883 54.545 15.63 0.00 46.52 3.93
594 667 2.674754 CCCCTAGGCGCTTTTGGA 59.325 61.111 7.64 0.00 0.00 3.53
608 681 4.911610 CGCTTTTGGAGTTTGTAGATTGTG 59.088 41.667 0.00 0.00 0.00 3.33
609 682 5.505654 CGCTTTTGGAGTTTGTAGATTGTGT 60.506 40.000 0.00 0.00 0.00 3.72
611 684 6.417930 GCTTTTGGAGTTTGTAGATTGTGTTC 59.582 38.462 0.00 0.00 0.00 3.18
613 686 6.618287 TTGGAGTTTGTAGATTGTGTTCTG 57.382 37.500 0.00 0.00 0.00 3.02
616 689 7.276658 TGGAGTTTGTAGATTGTGTTCTGTTA 58.723 34.615 0.00 0.00 0.00 2.41
659 732 7.332213 TCAGAAATGATTTGTTCTTGTCACA 57.668 32.000 0.00 0.00 31.66 3.58
671 744 5.523552 TGTTCTTGTCACACTCACAATACAG 59.476 40.000 0.00 0.00 33.30 2.74
675 748 2.996621 GTCACACTCACAATACAGGCTC 59.003 50.000 0.00 0.00 0.00 4.70
676 749 1.995484 CACACTCACAATACAGGCTCG 59.005 52.381 0.00 0.00 0.00 5.03
679 752 1.134965 ACTCACAATACAGGCTCGAGC 60.135 52.381 29.38 29.38 41.14 5.03
684 757 3.307242 CACAATACAGGCTCGAGCTAAAC 59.693 47.826 34.46 19.27 41.70 2.01
687 760 5.163447 ACAATACAGGCTCGAGCTAAACATA 60.163 40.000 34.46 18.82 41.70 2.29
691 764 4.081642 ACAGGCTCGAGCTAAACATAAGAA 60.082 41.667 34.46 0.00 41.70 2.52
694 767 6.037610 CAGGCTCGAGCTAAACATAAGAATTT 59.962 38.462 34.46 0.00 41.70 1.82
765 849 4.398319 CAGGTTGAACCACATAAAGAGGT 58.602 43.478 17.83 0.00 43.60 3.85
774 858 3.820467 CCACATAAAGAGGTTGTTGCAGA 59.180 43.478 0.00 0.00 0.00 4.26
775 859 4.320494 CCACATAAAGAGGTTGTTGCAGAC 60.320 45.833 0.00 0.00 0.00 3.51
776 860 4.516698 CACATAAAGAGGTTGTTGCAGACT 59.483 41.667 0.00 0.00 0.00 3.24
777 861 5.009010 CACATAAAGAGGTTGTTGCAGACTT 59.991 40.000 0.00 0.00 0.00 3.01
788 872 4.192000 CAGACTTGCAGTAGCCGG 57.808 61.111 0.00 0.00 41.13 6.13
789 873 1.591703 CAGACTTGCAGTAGCCGGA 59.408 57.895 5.05 0.00 41.13 5.14
790 874 0.037326 CAGACTTGCAGTAGCCGGAA 60.037 55.000 5.05 0.00 41.13 4.30
791 875 0.247736 AGACTTGCAGTAGCCGGAAG 59.752 55.000 5.05 0.00 41.13 3.46
792 876 1.362406 GACTTGCAGTAGCCGGAAGC 61.362 60.000 5.05 0.64 41.13 3.86
825 909 4.024545 GGCGAGGGGACGGGAAAA 62.025 66.667 0.00 0.00 0.00 2.29
826 910 2.436115 GCGAGGGGACGGGAAAAG 60.436 66.667 0.00 0.00 0.00 2.27
827 911 2.951101 GCGAGGGGACGGGAAAAGA 61.951 63.158 0.00 0.00 0.00 2.52
828 912 1.675219 CGAGGGGACGGGAAAAGAA 59.325 57.895 0.00 0.00 0.00 2.52
829 913 0.035739 CGAGGGGACGGGAAAAGAAA 59.964 55.000 0.00 0.00 0.00 2.52
830 914 1.531423 GAGGGGACGGGAAAAGAAAC 58.469 55.000 0.00 0.00 0.00 2.78
831 915 1.073444 GAGGGGACGGGAAAAGAAACT 59.927 52.381 0.00 0.00 0.00 2.66
832 916 1.202891 AGGGGACGGGAAAAGAAACTG 60.203 52.381 0.00 0.00 0.00 3.16
833 917 0.596577 GGGACGGGAAAAGAAACTGC 59.403 55.000 0.00 0.00 0.00 4.40
834 918 1.605753 GGACGGGAAAAGAAACTGCT 58.394 50.000 0.00 0.00 0.00 4.24
835 919 1.535896 GGACGGGAAAAGAAACTGCTC 59.464 52.381 0.00 0.00 0.00 4.26
836 920 1.535896 GACGGGAAAAGAAACTGCTCC 59.464 52.381 0.00 0.00 0.00 4.70
837 921 0.517316 CGGGAAAAGAAACTGCTCCG 59.483 55.000 0.00 0.00 0.00 4.63
838 922 1.876416 CGGGAAAAGAAACTGCTCCGA 60.876 52.381 0.00 0.00 38.64 4.55
839 923 2.227194 GGGAAAAGAAACTGCTCCGAA 58.773 47.619 0.00 0.00 0.00 4.30
840 924 2.226674 GGGAAAAGAAACTGCTCCGAAG 59.773 50.000 0.00 0.00 0.00 3.79
857 941 3.477530 CGAAGGAAGATATTGGGGTTCC 58.522 50.000 0.00 0.00 39.08 3.62
858 942 3.747708 CGAAGGAAGATATTGGGGTTCCC 60.748 52.174 0.00 0.00 45.71 3.97
868 952 2.887790 GGGGTTCCCAATGCTTCTC 58.112 57.895 10.25 0.00 44.65 2.87
869 953 0.684479 GGGGTTCCCAATGCTTCTCC 60.684 60.000 10.25 0.00 44.65 3.71
870 954 0.039618 GGGTTCCCAATGCTTCTCCA 59.960 55.000 2.59 0.00 0.00 3.86
871 955 1.177401 GGTTCCCAATGCTTCTCCAC 58.823 55.000 0.00 0.00 0.00 4.02
872 956 0.804989 GTTCCCAATGCTTCTCCACG 59.195 55.000 0.00 0.00 0.00 4.94
873 957 0.960364 TTCCCAATGCTTCTCCACGC 60.960 55.000 0.00 0.00 0.00 5.34
874 958 2.409870 CCCAATGCTTCTCCACGCC 61.410 63.158 0.00 0.00 0.00 5.68
875 959 2.409870 CCAATGCTTCTCCACGCCC 61.410 63.158 0.00 0.00 0.00 6.13
876 960 1.675310 CAATGCTTCTCCACGCCCA 60.675 57.895 0.00 0.00 0.00 5.36
877 961 1.074775 AATGCTTCTCCACGCCCAA 59.925 52.632 0.00 0.00 0.00 4.12
878 962 1.244019 AATGCTTCTCCACGCCCAAC 61.244 55.000 0.00 0.00 0.00 3.77
890 974 2.745884 CCCAACGAGATGCGCCAA 60.746 61.111 4.18 0.00 46.04 4.52
891 975 2.480555 CCAACGAGATGCGCCAAC 59.519 61.111 4.18 0.00 46.04 3.77
892 976 2.480555 CAACGAGATGCGCCAACC 59.519 61.111 4.18 0.00 46.04 3.77
893 977 2.034879 CAACGAGATGCGCCAACCT 61.035 57.895 4.18 0.00 46.04 3.50
894 978 1.741770 AACGAGATGCGCCAACCTC 60.742 57.895 4.18 5.16 46.04 3.85
895 979 3.257561 CGAGATGCGCCAACCTCG 61.258 66.667 18.24 18.24 41.71 4.63
896 980 2.892425 GAGATGCGCCAACCTCGG 60.892 66.667 4.18 0.00 0.00 4.63
897 981 4.473520 AGATGCGCCAACCTCGGG 62.474 66.667 4.18 0.00 0.00 5.14
898 982 4.467084 GATGCGCCAACCTCGGGA 62.467 66.667 4.18 0.00 0.00 5.14
899 983 3.757248 GATGCGCCAACCTCGGGAT 62.757 63.158 4.18 0.00 0.00 3.85
900 984 4.776322 TGCGCCAACCTCGGGATG 62.776 66.667 4.18 0.00 0.00 3.51
902 986 4.473520 CGCCAACCTCGGGATGCT 62.474 66.667 0.00 0.00 0.00 3.79
903 987 2.044946 GCCAACCTCGGGATGCTT 60.045 61.111 0.00 0.00 0.00 3.91
904 988 1.678970 GCCAACCTCGGGATGCTTT 60.679 57.895 0.00 0.00 0.00 3.51
905 989 0.393808 GCCAACCTCGGGATGCTTTA 60.394 55.000 0.00 0.00 0.00 1.85
906 990 1.379527 CCAACCTCGGGATGCTTTAC 58.620 55.000 0.00 0.00 0.00 2.01
907 991 1.065418 CCAACCTCGGGATGCTTTACT 60.065 52.381 0.00 0.00 0.00 2.24
908 992 2.280628 CAACCTCGGGATGCTTTACTC 58.719 52.381 0.00 0.00 0.00 2.59
909 993 0.831307 ACCTCGGGATGCTTTACTCC 59.169 55.000 0.00 0.00 0.00 3.85
910 994 1.123928 CCTCGGGATGCTTTACTCCT 58.876 55.000 0.00 0.00 0.00 3.69
911 995 2.317040 CCTCGGGATGCTTTACTCCTA 58.683 52.381 0.00 0.00 0.00 2.94
912 996 2.698797 CCTCGGGATGCTTTACTCCTAA 59.301 50.000 0.00 0.00 0.00 2.69
913 997 3.492829 CCTCGGGATGCTTTACTCCTAAC 60.493 52.174 0.00 0.00 0.00 2.34
914 998 2.433239 TCGGGATGCTTTACTCCTAACC 59.567 50.000 0.00 0.00 0.00 2.85
915 999 2.484947 CGGGATGCTTTACTCCTAACCC 60.485 54.545 0.00 0.00 0.00 4.11
916 1000 2.158652 GGGATGCTTTACTCCTAACCCC 60.159 54.545 0.00 0.00 0.00 4.95
917 1001 2.508300 GGATGCTTTACTCCTAACCCCA 59.492 50.000 0.00 0.00 0.00 4.96
918 1002 3.542648 GATGCTTTACTCCTAACCCCAC 58.457 50.000 0.00 0.00 0.00 4.61
919 1003 1.276989 TGCTTTACTCCTAACCCCACG 59.723 52.381 0.00 0.00 0.00 4.94
920 1004 1.406477 GCTTTACTCCTAACCCCACGG 60.406 57.143 0.00 0.00 0.00 4.94
921 1005 0.614812 TTTACTCCTAACCCCACGGC 59.385 55.000 0.00 0.00 0.00 5.68
922 1006 1.606885 TTACTCCTAACCCCACGGCG 61.607 60.000 4.80 4.80 0.00 6.46
923 1007 4.157120 CTCCTAACCCCACGGCGG 62.157 72.222 13.24 0.00 0.00 6.13
925 1009 4.024545 CCTAACCCCACGGCGGTT 62.025 66.667 13.24 8.22 45.59 4.44
926 1010 2.435410 CTAACCCCACGGCGGTTC 60.435 66.667 13.24 0.00 42.69 3.62
927 1011 3.963687 CTAACCCCACGGCGGTTCC 62.964 68.421 13.24 0.00 42.69 3.62
945 1029 0.859232 CCGAGACGGGCATAAAATCG 59.141 55.000 2.00 0.00 44.15 3.34
946 1030 0.232303 CGAGACGGGCATAAAATCGC 59.768 55.000 0.00 0.00 0.00 4.58
947 1031 1.583054 GAGACGGGCATAAAATCGCT 58.417 50.000 0.00 0.00 0.00 4.93
948 1032 1.940613 GAGACGGGCATAAAATCGCTT 59.059 47.619 0.00 0.00 0.00 4.68
949 1033 2.354821 GAGACGGGCATAAAATCGCTTT 59.645 45.455 0.00 0.00 0.00 3.51
950 1034 2.354821 AGACGGGCATAAAATCGCTTTC 59.645 45.455 0.00 0.00 0.00 2.62
951 1035 2.354821 GACGGGCATAAAATCGCTTTCT 59.645 45.455 0.00 0.00 0.00 2.52
952 1036 2.752903 ACGGGCATAAAATCGCTTTCTT 59.247 40.909 0.00 0.00 0.00 2.52
953 1037 3.192633 ACGGGCATAAAATCGCTTTCTTT 59.807 39.130 0.00 0.00 0.00 2.52
954 1038 3.791353 CGGGCATAAAATCGCTTTCTTTC 59.209 43.478 0.00 0.00 0.00 2.62
955 1039 4.438744 CGGGCATAAAATCGCTTTCTTTCT 60.439 41.667 0.00 0.00 0.00 2.52
956 1040 4.800471 GGGCATAAAATCGCTTTCTTTCTG 59.200 41.667 0.00 0.00 0.00 3.02
957 1041 5.402398 GGCATAAAATCGCTTTCTTTCTGT 58.598 37.500 0.00 0.00 0.00 3.41
958 1042 6.404293 GGGCATAAAATCGCTTTCTTTCTGTA 60.404 38.462 0.00 0.00 0.00 2.74
959 1043 6.688813 GGCATAAAATCGCTTTCTTTCTGTAG 59.311 38.462 0.00 0.00 0.00 2.74
960 1044 6.688813 GCATAAAATCGCTTTCTTTCTGTAGG 59.311 38.462 0.00 0.00 0.00 3.18
961 1045 5.629079 AAAATCGCTTTCTTTCTGTAGGG 57.371 39.130 0.00 0.00 0.00 3.53
962 1046 4.553330 AATCGCTTTCTTTCTGTAGGGA 57.447 40.909 0.00 0.00 34.66 4.20
963 1047 3.594603 TCGCTTTCTTTCTGTAGGGAG 57.405 47.619 0.00 0.00 0.00 4.30
964 1048 2.233922 TCGCTTTCTTTCTGTAGGGAGG 59.766 50.000 0.00 0.00 0.00 4.30
965 1049 2.233922 CGCTTTCTTTCTGTAGGGAGGA 59.766 50.000 0.00 0.00 0.00 3.71
966 1050 3.601435 GCTTTCTTTCTGTAGGGAGGAC 58.399 50.000 0.00 0.00 0.00 3.85
967 1051 3.851098 CTTTCTTTCTGTAGGGAGGACG 58.149 50.000 0.00 0.00 0.00 4.79
968 1052 1.848652 TCTTTCTGTAGGGAGGACGG 58.151 55.000 0.00 0.00 0.00 4.79
969 1053 1.356738 TCTTTCTGTAGGGAGGACGGA 59.643 52.381 0.00 0.00 0.00 4.69
970 1054 2.024273 TCTTTCTGTAGGGAGGACGGAT 60.024 50.000 0.00 0.00 32.30 4.18
971 1055 1.776662 TTCTGTAGGGAGGACGGATG 58.223 55.000 0.00 0.00 32.30 3.51
972 1056 0.924090 TCTGTAGGGAGGACGGATGA 59.076 55.000 0.00 0.00 0.00 2.92
973 1057 1.499438 TCTGTAGGGAGGACGGATGAT 59.501 52.381 0.00 0.00 0.00 2.45
974 1058 2.091278 TCTGTAGGGAGGACGGATGATT 60.091 50.000 0.00 0.00 0.00 2.57
975 1059 2.297597 CTGTAGGGAGGACGGATGATTC 59.702 54.545 0.00 0.00 0.00 2.52
976 1060 2.317040 GTAGGGAGGACGGATGATTCA 58.683 52.381 0.00 0.00 0.00 2.57
977 1061 1.879575 AGGGAGGACGGATGATTCAA 58.120 50.000 0.00 0.00 0.00 2.69
978 1062 1.765314 AGGGAGGACGGATGATTCAAG 59.235 52.381 0.00 0.00 0.00 3.02
979 1063 1.486726 GGGAGGACGGATGATTCAAGT 59.513 52.381 0.00 0.00 0.00 3.16
980 1064 2.698797 GGGAGGACGGATGATTCAAGTA 59.301 50.000 0.00 0.00 0.00 2.24
981 1065 3.134081 GGGAGGACGGATGATTCAAGTAA 59.866 47.826 0.00 0.00 0.00 2.24
982 1066 4.372656 GGAGGACGGATGATTCAAGTAAG 58.627 47.826 0.00 0.00 0.00 2.34
983 1067 4.372656 GAGGACGGATGATTCAAGTAAGG 58.627 47.826 0.00 0.00 0.00 2.69
984 1068 3.134804 AGGACGGATGATTCAAGTAAGGG 59.865 47.826 0.00 0.00 0.00 3.95
985 1069 2.872858 GACGGATGATTCAAGTAAGGGC 59.127 50.000 0.00 0.00 0.00 5.19
986 1070 2.505819 ACGGATGATTCAAGTAAGGGCT 59.494 45.455 0.00 0.00 0.00 5.19
987 1071 2.874701 CGGATGATTCAAGTAAGGGCTG 59.125 50.000 0.00 0.00 0.00 4.85
988 1072 3.432186 CGGATGATTCAAGTAAGGGCTGA 60.432 47.826 0.00 0.00 0.00 4.26
989 1073 4.133078 GGATGATTCAAGTAAGGGCTGAG 58.867 47.826 0.00 0.00 0.00 3.35
1122 1206 2.193536 GCGCCCCAAACTCACACTT 61.194 57.895 0.00 0.00 0.00 3.16
1144 1229 8.960591 CACTTAAAGAAAATGGTGTATCCTCAT 58.039 33.333 0.00 0.00 37.07 2.90
1148 1233 6.078456 AGAAAATGGTGTATCCTCATGGAA 57.922 37.500 0.00 0.00 46.80 3.53
1234 1319 4.657814 ACAAGAAGGCCAAAGAGGAATA 57.342 40.909 5.01 0.00 41.22 1.75
1238 1323 5.456921 AGAAGGCCAAAGAGGAATATGAA 57.543 39.130 5.01 0.00 41.22 2.57
1248 1333 4.848357 AGAGGAATATGAACCCAACAGTG 58.152 43.478 0.00 0.00 0.00 3.66
1257 1354 4.722700 CCAACAGTGCCGAGGGGG 62.723 72.222 0.00 0.00 39.58 5.40
1270 1367 2.433436 CGAGGGGGAAACTAAAAGTGG 58.567 52.381 0.00 0.00 0.00 4.00
1300 1397 4.988716 TGAGGACCTCGCGGTGGT 62.989 66.667 21.16 21.16 45.73 4.16
1301 1398 4.436998 GAGGACCTCGCGGTGGTG 62.437 72.222 24.82 4.82 45.73 4.17
1333 1430 2.344203 CCGAGACTCTGAAGCCCGT 61.344 63.158 0.03 0.00 0.00 5.28
1335 1432 1.867919 CGAGACTCTGAAGCCCGTGT 61.868 60.000 0.03 0.00 0.00 4.49
1338 1435 0.249911 GACTCTGAAGCCCGTGTTGT 60.250 55.000 0.00 0.00 0.00 3.32
1385 1482 1.134340 ACCTACACAAGTGCGGTGAAA 60.134 47.619 12.25 0.00 39.53 2.69
1489 1586 2.799371 GAGGAGATCGTCGGCGTT 59.201 61.111 10.18 0.00 39.49 4.84
1502 1605 4.947147 GCGTTGCCTCCACACCCA 62.947 66.667 0.00 0.00 0.00 4.51
1543 1647 0.316841 TTCAGTTTGCGGGGAAATGC 59.683 50.000 0.00 0.00 0.00 3.56
1558 1662 4.464008 GGAAATGCCATCATTAGGACTCA 58.536 43.478 0.00 0.00 41.77 3.41
1559 1663 5.075493 GGAAATGCCATCATTAGGACTCAT 58.925 41.667 0.00 0.00 41.77 2.90
1567 1671 8.271458 TGCCATCATTAGGACTCATAGTTTAAA 58.729 33.333 0.00 0.00 0.00 1.52
1678 1787 3.728845 TGTGTAGGTCTCTGTTCTTTGC 58.271 45.455 0.00 0.00 0.00 3.68
1680 1789 2.038557 TGTAGGTCTCTGTTCTTTGCCC 59.961 50.000 0.00 0.00 0.00 5.36
1687 1796 0.169672 CTGTTCTTTGCCCGCTGATG 59.830 55.000 0.00 0.00 0.00 3.07
1713 1822 8.911918 AAGGTTATGTGAACTGTATTGTACAA 57.088 30.769 11.41 11.41 38.38 2.41
1722 1831 7.744715 GTGAACTGTATTGTACAATGTTGCTAC 59.255 37.037 27.62 17.81 38.38 3.58
1723 1832 7.442666 TGAACTGTATTGTACAATGTTGCTACA 59.557 33.333 27.62 20.83 38.38 2.74
1770 1879 4.037923 AGTTGATGCTCGGACAAACAAAAT 59.962 37.500 0.00 0.00 0.00 1.82
1783 1892 6.922957 GGACAAACAAAATGTGATGCTTAGAA 59.077 34.615 0.00 0.00 0.00 2.10
1948 5774 4.459089 GGCCTCACAGGGTCGAGC 62.459 72.222 5.93 5.93 35.37 5.03
1957 5783 1.282447 ACAGGGTCGAGCTAGAAGAGA 59.718 52.381 15.18 0.00 0.00 3.10
1962 5788 2.001159 GTCGAGCTAGAAGAGACACGA 58.999 52.381 0.00 0.00 32.57 4.35
1982 5809 0.534873 TGAGATCGGTGGCGATTTCA 59.465 50.000 0.00 0.00 37.23 2.69
1994 5821 4.154918 GTGGCGATTTCAAAGATGAAGACT 59.845 41.667 0.00 0.00 45.82 3.24
1996 5823 4.393062 GGCGATTTCAAAGATGAAGACTGA 59.607 41.667 0.00 0.00 45.82 3.41
1999 5826 6.671879 GCGATTTCAAAGATGAAGACTGAGAC 60.672 42.308 0.00 0.00 45.82 3.36
2001 5828 6.851222 TTTCAAAGATGAAGACTGAGACAC 57.149 37.500 0.00 0.00 45.82 3.67
2002 5829 5.535753 TCAAAGATGAAGACTGAGACACA 57.464 39.130 0.00 0.00 30.99 3.72
2009 5836 0.108898 AGACTGAGACACATGCTCGC 60.109 55.000 0.00 0.00 35.15 5.03
2022 5849 3.827898 CTCGCCCAGTCGGAGGAC 61.828 72.222 0.00 0.00 43.76 3.85
2073 5900 0.029167 TCACAAACACGTCGACGCTA 59.971 50.000 35.92 10.96 44.43 4.26
2076 5903 0.160182 CAAACACGTCGACGCTAACC 59.840 55.000 35.92 0.00 44.43 2.85
2100 5927 1.366111 CGGTTTGTAGATGGGCCACG 61.366 60.000 9.28 0.00 0.00 4.94
2102 5929 0.676782 GTTTGTAGATGGGCCACGCT 60.677 55.000 9.28 12.57 0.00 5.07
2114 5941 3.680786 CACGCTCACCTCCCGTCA 61.681 66.667 0.00 0.00 32.18 4.35
2131 5958 2.480416 CGTCATTGTCCTCTAGCCTGTC 60.480 54.545 0.00 0.00 0.00 3.51
2135 5962 3.741245 TTGTCCTCTAGCCTGTCTAGT 57.259 47.619 0.00 0.00 44.10 2.57
2139 5966 2.092321 TCCTCTAGCCTGTCTAGTGACC 60.092 54.545 0.00 0.00 44.10 4.02
2141 5968 1.639108 TCTAGCCTGTCTAGTGACCCA 59.361 52.381 0.00 0.00 44.10 4.51
2142 5969 2.028130 CTAGCCTGTCTAGTGACCCAG 58.972 57.143 0.00 0.00 42.28 4.45
2143 5970 0.616111 AGCCTGTCTAGTGACCCAGG 60.616 60.000 0.00 0.00 42.28 4.45
2144 5971 0.905337 GCCTGTCTAGTGACCCAGGT 60.905 60.000 6.42 0.00 42.28 4.00
2145 5972 0.898320 CCTGTCTAGTGACCCAGGTG 59.102 60.000 0.00 0.00 42.28 4.00
2147 5974 1.546476 CTGTCTAGTGACCCAGGTGTC 59.454 57.143 0.00 0.00 42.28 3.67
2149 5976 1.546476 GTCTAGTGACCCAGGTGTCTG 59.454 57.143 0.00 0.00 37.24 3.51
2150 5977 1.427753 TCTAGTGACCCAGGTGTCTGA 59.572 52.381 0.00 1.82 43.49 3.27
2152 5979 1.734655 AGTGACCCAGGTGTCTGAAT 58.265 50.000 0.00 0.00 43.49 2.57
2153 5980 2.902608 AGTGACCCAGGTGTCTGAATA 58.097 47.619 0.00 0.00 43.49 1.75
2155 5982 3.261897 AGTGACCCAGGTGTCTGAATAAG 59.738 47.826 0.00 0.00 43.49 1.73
2156 5983 2.571653 TGACCCAGGTGTCTGAATAAGG 59.428 50.000 0.00 0.00 43.49 2.69
2157 5984 2.838202 GACCCAGGTGTCTGAATAAGGA 59.162 50.000 0.00 0.00 43.49 3.36
2159 5986 2.840651 CCCAGGTGTCTGAATAAGGACT 59.159 50.000 0.00 0.00 43.49 3.85
2160 5987 4.030913 CCCAGGTGTCTGAATAAGGACTA 58.969 47.826 0.00 0.00 43.49 2.59
2161 5988 4.100189 CCCAGGTGTCTGAATAAGGACTAG 59.900 50.000 0.00 0.00 43.49 2.57
2162 5989 4.442192 CCAGGTGTCTGAATAAGGACTAGC 60.442 50.000 0.00 0.00 43.49 3.42
2163 5990 4.404073 CAGGTGTCTGAATAAGGACTAGCT 59.596 45.833 0.00 0.00 43.49 3.32
2164 5991 4.404073 AGGTGTCTGAATAAGGACTAGCTG 59.596 45.833 0.00 0.00 34.01 4.24
2165 5992 4.442192 GGTGTCTGAATAAGGACTAGCTGG 60.442 50.000 0.00 0.00 34.01 4.85
2166 5993 4.402793 GTGTCTGAATAAGGACTAGCTGGA 59.597 45.833 3.17 0.00 34.01 3.86
2167 5994 4.402793 TGTCTGAATAAGGACTAGCTGGAC 59.597 45.833 3.17 0.00 34.01 4.02
2168 5995 4.647399 GTCTGAATAAGGACTAGCTGGACT 59.353 45.833 3.17 0.00 0.00 3.85
2169 5996 4.646945 TCTGAATAAGGACTAGCTGGACTG 59.353 45.833 3.17 0.00 0.00 3.51
2170 5997 4.610333 TGAATAAGGACTAGCTGGACTGA 58.390 43.478 3.17 0.00 0.00 3.41
2171 5998 5.023452 TGAATAAGGACTAGCTGGACTGAA 58.977 41.667 3.17 0.00 0.00 3.02
2172 5999 5.127845 TGAATAAGGACTAGCTGGACTGAAG 59.872 44.000 3.17 0.00 0.00 3.02
2173 6000 2.614134 AGGACTAGCTGGACTGAAGT 57.386 50.000 3.17 0.00 0.00 3.01
2174 6001 2.175202 AGGACTAGCTGGACTGAAGTG 58.825 52.381 3.17 0.00 0.00 3.16
2179 6006 1.123861 AGCTGGACTGAAGTGCTCCA 61.124 55.000 3.55 0.00 37.28 3.86
2197 6024 1.650528 CAAAATTTGGGGCCCTACCA 58.349 50.000 25.93 8.73 42.05 3.25
2201 6028 1.878211 ATTTGGGGCCCTACCAATTG 58.122 50.000 25.93 0.00 46.55 2.32
2217 6044 1.937191 ATTGGGGGTCATGTTTGGTC 58.063 50.000 0.00 0.00 0.00 4.02
2218 6045 0.558220 TTGGGGGTCATGTTTGGTCA 59.442 50.000 0.00 0.00 0.00 4.02
2221 6048 0.958822 GGGGTCATGTTTGGTCACAC 59.041 55.000 0.00 0.00 0.00 3.82
2233 6060 2.186826 GTCACACGGGCTGCTTGTT 61.187 57.895 0.00 0.00 0.00 2.83
2239 6066 2.116125 GGGCTGCTTGTTCCTGGT 59.884 61.111 0.00 0.00 0.00 4.00
2244 6071 2.079925 GCTGCTTGTTCCTGGTTCTAG 58.920 52.381 0.00 0.00 0.00 2.43
2284 6111 7.463913 CGATGTCTGCTATTCTCAAAACTCTTC 60.464 40.741 0.00 0.00 0.00 2.87
2295 6122 6.808829 TCTCAAAACTCTTCGTGGTTTACTA 58.191 36.000 0.00 0.00 35.02 1.82
2296 6123 6.921857 TCTCAAAACTCTTCGTGGTTTACTAG 59.078 38.462 0.00 0.00 35.02 2.57
2298 6125 6.477688 TCAAAACTCTTCGTGGTTTACTAGTG 59.522 38.462 5.39 0.00 35.02 2.74
2340 6238 2.742053 CCATCACAACTTGTTCCTACCG 59.258 50.000 0.00 0.00 0.00 4.02
2401 6299 3.817960 CGTAATAACGGCACATGGC 57.182 52.632 0.00 0.00 45.50 4.40
2439 6337 4.146961 CCCATACGCACGTTTAGTTATACG 59.853 45.833 0.00 0.00 43.08 3.06
2460 6358 3.618594 CGAAGACTTGATGTATGGTGGTG 59.381 47.826 0.00 0.00 0.00 4.17
2461 6359 4.620567 CGAAGACTTGATGTATGGTGGTGA 60.621 45.833 0.00 0.00 0.00 4.02
2462 6360 4.478206 AGACTTGATGTATGGTGGTGAG 57.522 45.455 0.00 0.00 0.00 3.51
2463 6361 4.096681 AGACTTGATGTATGGTGGTGAGA 58.903 43.478 0.00 0.00 0.00 3.27
2464 6362 4.718774 AGACTTGATGTATGGTGGTGAGAT 59.281 41.667 0.00 0.00 0.00 2.75
2465 6363 5.899547 AGACTTGATGTATGGTGGTGAGATA 59.100 40.000 0.00 0.00 0.00 1.98
2466 6364 6.384015 AGACTTGATGTATGGTGGTGAGATAA 59.616 38.462 0.00 0.00 0.00 1.75
2467 6365 7.071698 AGACTTGATGTATGGTGGTGAGATAAT 59.928 37.037 0.00 0.00 0.00 1.28
2468 6366 7.577303 ACTTGATGTATGGTGGTGAGATAATT 58.423 34.615 0.00 0.00 0.00 1.40
2469 6367 8.713971 ACTTGATGTATGGTGGTGAGATAATTA 58.286 33.333 0.00 0.00 0.00 1.40
2470 6368 8.902540 TTGATGTATGGTGGTGAGATAATTAC 57.097 34.615 0.00 0.00 0.00 1.89
2471 6369 8.028652 TGATGTATGGTGGTGAGATAATTACA 57.971 34.615 0.00 0.00 0.00 2.41
2472 6370 8.490311 TGATGTATGGTGGTGAGATAATTACAA 58.510 33.333 0.00 0.00 0.00 2.41
2473 6371 8.677148 ATGTATGGTGGTGAGATAATTACAAC 57.323 34.615 0.00 0.00 0.00 3.32
2474 6372 7.857456 TGTATGGTGGTGAGATAATTACAACT 58.143 34.615 0.00 0.00 0.00 3.16
2475 6373 8.983789 TGTATGGTGGTGAGATAATTACAACTA 58.016 33.333 0.00 0.00 0.00 2.24
2476 6374 9.257651 GTATGGTGGTGAGATAATTACAACTAC 57.742 37.037 0.00 0.00 0.00 2.73
2477 6375 6.334989 TGGTGGTGAGATAATTACAACTACG 58.665 40.000 0.00 0.00 0.00 3.51
2478 6376 5.751990 GGTGGTGAGATAATTACAACTACGG 59.248 44.000 0.00 0.00 0.00 4.02
2479 6377 6.335777 GTGGTGAGATAATTACAACTACGGT 58.664 40.000 0.00 0.00 0.00 4.83
2480 6378 7.416664 GGTGGTGAGATAATTACAACTACGGTA 60.417 40.741 0.00 0.00 0.00 4.02
2481 6379 7.433425 GTGGTGAGATAATTACAACTACGGTAC 59.567 40.741 0.00 0.00 0.00 3.34
2482 6380 6.920210 GGTGAGATAATTACAACTACGGTACC 59.080 42.308 0.16 0.16 0.00 3.34
2483 6381 7.201857 GGTGAGATAATTACAACTACGGTACCT 60.202 40.741 10.90 0.00 0.00 3.08
2484 6382 7.646922 GTGAGATAATTACAACTACGGTACCTG 59.353 40.741 10.90 6.27 0.00 4.00
2485 6383 7.340232 TGAGATAATTACAACTACGGTACCTGT 59.660 37.037 10.90 12.05 0.00 4.00
2486 6384 8.752005 AGATAATTACAACTACGGTACCTGTA 57.248 34.615 10.90 12.54 0.00 2.74
2487 6385 8.624776 AGATAATTACAACTACGGTACCTGTAC 58.375 37.037 10.90 0.00 35.40 2.90
2488 6386 6.840780 AATTACAACTACGGTACCTGTACT 57.159 37.500 10.90 3.03 36.36 2.73
2489 6387 7.938140 AATTACAACTACGGTACCTGTACTA 57.062 36.000 10.90 0.00 36.36 1.82
2490 6388 8.525290 AATTACAACTACGGTACCTGTACTAT 57.475 34.615 10.90 0.61 36.36 2.12
2491 6389 7.553881 TTACAACTACGGTACCTGTACTATC 57.446 40.000 10.90 0.00 36.36 2.08
2492 6390 5.749462 ACAACTACGGTACCTGTACTATCT 58.251 41.667 10.90 0.00 36.36 1.98
2493 6391 5.587844 ACAACTACGGTACCTGTACTATCTG 59.412 44.000 10.90 4.20 36.36 2.90
2494 6392 4.712476 ACTACGGTACCTGTACTATCTGG 58.288 47.826 10.90 3.58 36.36 3.86
2495 6393 2.305009 ACGGTACCTGTACTATCTGGC 58.695 52.381 10.90 0.00 36.36 4.85
2496 6394 2.304092 CGGTACCTGTACTATCTGGCA 58.696 52.381 10.90 0.00 36.36 4.92
2497 6395 2.034305 CGGTACCTGTACTATCTGGCAC 59.966 54.545 10.90 0.00 36.36 5.01
2498 6396 2.034305 GGTACCTGTACTATCTGGCACG 59.966 54.545 4.06 0.00 36.36 5.34
2499 6397 1.848652 ACCTGTACTATCTGGCACGT 58.151 50.000 0.00 0.00 0.00 4.49
2500 6398 3.008835 ACCTGTACTATCTGGCACGTA 57.991 47.619 0.00 0.00 0.00 3.57
2501 6399 3.359033 ACCTGTACTATCTGGCACGTAA 58.641 45.455 0.00 0.00 0.00 3.18
2502 6400 3.129988 ACCTGTACTATCTGGCACGTAAC 59.870 47.826 0.00 0.00 0.00 2.50
2503 6401 3.129813 CCTGTACTATCTGGCACGTAACA 59.870 47.826 0.00 0.00 0.00 2.41
2504 6402 4.381185 CCTGTACTATCTGGCACGTAACAA 60.381 45.833 0.00 0.00 0.00 2.83
2505 6403 4.740268 TGTACTATCTGGCACGTAACAAG 58.260 43.478 0.00 0.00 0.00 3.16
2506 6404 4.460034 TGTACTATCTGGCACGTAACAAGA 59.540 41.667 0.00 0.00 0.00 3.02
2507 6405 4.530710 ACTATCTGGCACGTAACAAGAA 57.469 40.909 0.00 0.00 0.00 2.52
2508 6406 4.495422 ACTATCTGGCACGTAACAAGAAG 58.505 43.478 0.00 2.40 0.00 2.85
2509 6407 2.163818 TCTGGCACGTAACAAGAAGG 57.836 50.000 0.00 0.00 0.00 3.46
2510 6408 1.414919 TCTGGCACGTAACAAGAAGGT 59.585 47.619 0.00 0.00 0.00 3.50
2511 6409 1.798813 CTGGCACGTAACAAGAAGGTC 59.201 52.381 0.00 0.00 0.00 3.85
2512 6410 1.154197 GGCACGTAACAAGAAGGTCC 58.846 55.000 0.00 0.00 0.00 4.46
2513 6411 1.270678 GGCACGTAACAAGAAGGTCCT 60.271 52.381 0.00 0.00 0.00 3.85
2514 6412 1.798813 GCACGTAACAAGAAGGTCCTG 59.201 52.381 0.00 0.00 0.00 3.86
2515 6413 2.413837 CACGTAACAAGAAGGTCCTGG 58.586 52.381 0.00 0.00 0.00 4.45
2516 6414 1.270678 ACGTAACAAGAAGGTCCTGGC 60.271 52.381 0.00 0.00 0.00 4.85
2517 6415 1.270625 CGTAACAAGAAGGTCCTGGCA 60.271 52.381 0.00 0.00 0.00 4.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 100 1.877443 AGGGTCGGAATTTGAAACACG 59.123 47.619 0.00 0.00 0.00 4.49
74 106 2.105821 ACTGTGAAGGGTCGGAATTTGA 59.894 45.455 0.00 0.00 0.00 2.69
85 117 4.021981 GGGAAAATCAGAAACTGTGAAGGG 60.022 45.833 0.00 0.00 32.61 3.95
94 126 3.818773 TCTCAACCGGGAAAATCAGAAAC 59.181 43.478 6.32 0.00 0.00 2.78
137 195 6.037172 ACAGCCAACAGTAAATCAATCGATAC 59.963 38.462 0.00 0.00 0.00 2.24
150 211 1.332375 GAACGCAAACAGCCAACAGTA 59.668 47.619 0.00 0.00 41.38 2.74
152 213 0.929824 CGAACGCAAACAGCCAACAG 60.930 55.000 0.00 0.00 41.38 3.16
167 228 3.553105 ACAAAACGAACCAGTAGACGAAC 59.447 43.478 0.00 0.00 0.00 3.95
183 244 4.638865 ACCCAAGTCTCAACACTACAAAAC 59.361 41.667 0.00 0.00 0.00 2.43
190 251 3.709653 TGTTCTACCCAAGTCTCAACACT 59.290 43.478 0.00 0.00 0.00 3.55
210 271 0.548989 TTTGCCCACTACCACTGTGT 59.451 50.000 7.08 0.00 33.92 3.72
249 310 7.658575 AGCTGAAATGCATAAAATTCAACACTT 59.341 29.630 11.59 0.00 31.94 3.16
277 338 6.481644 GGTTGATACAAAAAGGTTCAATGCAA 59.518 34.615 0.00 0.00 0.00 4.08
283 344 5.835819 TGGATGGTTGATACAAAAAGGTTCA 59.164 36.000 0.00 0.00 0.00 3.18
284 345 6.015434 AGTGGATGGTTGATACAAAAAGGTTC 60.015 38.462 0.00 0.00 0.00 3.62
380 445 1.022982 TCATCTTCAGCAAGCAGGCG 61.023 55.000 0.00 0.00 39.27 5.52
412 477 4.331968 TGTGATGGAAAATAAGAAGCCGT 58.668 39.130 0.00 0.00 0.00 5.68
413 478 4.731773 GCTGTGATGGAAAATAAGAAGCCG 60.732 45.833 0.00 0.00 0.00 5.52
420 485 2.760092 GCTGGGCTGTGATGGAAAATAA 59.240 45.455 0.00 0.00 0.00 1.40
467 540 4.093998 AGAGTGTTTTGCTCATATTCAGCG 59.906 41.667 0.00 0.00 40.01 5.18
471 544 8.034058 AGTAACAGAGTGTTTTGCTCATATTC 57.966 34.615 0.00 0.00 41.45 1.75
478 551 4.292977 GCAAGTAACAGAGTGTTTTGCT 57.707 40.909 16.54 4.54 44.41 3.91
503 576 7.280205 GGAATTTACGGTACTCAGATGAACATT 59.720 37.037 0.00 0.00 0.00 2.71
504 577 6.761714 GGAATTTACGGTACTCAGATGAACAT 59.238 38.462 0.00 0.00 0.00 2.71
506 579 6.338937 AGGAATTTACGGTACTCAGATGAAC 58.661 40.000 0.00 0.00 0.00 3.18
507 580 6.540438 AGGAATTTACGGTACTCAGATGAA 57.460 37.500 0.00 0.00 0.00 2.57
508 581 6.070995 ACAAGGAATTTACGGTACTCAGATGA 60.071 38.462 0.00 0.00 0.00 2.92
509 582 6.036083 CACAAGGAATTTACGGTACTCAGATG 59.964 42.308 0.00 0.00 0.00 2.90
510 583 6.106673 CACAAGGAATTTACGGTACTCAGAT 58.893 40.000 0.00 0.00 0.00 2.90
511 584 5.475719 CACAAGGAATTTACGGTACTCAGA 58.524 41.667 0.00 0.00 0.00 3.27
512 585 4.092968 GCACAAGGAATTTACGGTACTCAG 59.907 45.833 0.00 0.00 0.00 3.35
513 586 3.998341 GCACAAGGAATTTACGGTACTCA 59.002 43.478 0.00 0.00 0.00 3.41
514 587 3.998341 TGCACAAGGAATTTACGGTACTC 59.002 43.478 0.00 0.00 0.00 2.59
520 593 4.481930 TTGTCTGCACAAGGAATTTACG 57.518 40.909 0.00 0.00 37.61 3.18
550 623 9.552114 CTGATGTTCATCTGAGAAACATTTAAC 57.448 33.333 12.33 2.98 0.00 2.01
558 631 3.614092 GGGCTGATGTTCATCTGAGAAA 58.386 45.455 18.90 0.00 0.00 2.52
559 632 2.092753 GGGGCTGATGTTCATCTGAGAA 60.093 50.000 18.90 0.00 0.00 2.87
563 636 2.224475 CCTAGGGGCTGATGTTCATCTG 60.224 54.545 12.94 12.95 0.00 2.90
577 650 1.452108 CTCCAAAAGCGCCTAGGGG 60.452 63.158 21.24 21.24 0.00 4.79
578 651 0.322546 AACTCCAAAAGCGCCTAGGG 60.323 55.000 11.72 0.72 0.00 3.53
581 654 1.975660 ACAAACTCCAAAAGCGCCTA 58.024 45.000 2.29 0.00 0.00 3.93
585 658 4.911610 CACAATCTACAAACTCCAAAAGCG 59.088 41.667 0.00 0.00 0.00 4.68
633 706 9.065798 TGTGACAAGAACAAATCATTTCTGATA 57.934 29.630 0.00 0.00 41.34 2.15
659 732 1.134965 GCTCGAGCCTGTATTGTGAGT 60.135 52.381 27.22 0.00 34.31 3.41
671 744 5.993106 AATTCTTATGTTTAGCTCGAGCC 57.007 39.130 32.94 18.37 43.38 4.70
700 773 8.603242 AGACGGTCAAAATATATTAAAGCGAT 57.397 30.769 22.33 13.17 0.00 4.58
706 779 8.500753 AGCACAAGACGGTCAAAATATATTAA 57.499 30.769 11.27 0.00 0.00 1.40
708 781 7.391148 AAGCACAAGACGGTCAAAATATATT 57.609 32.000 11.27 0.00 0.00 1.28
709 782 7.391148 AAAGCACAAGACGGTCAAAATATAT 57.609 32.000 11.27 0.00 0.00 0.86
713 786 4.261447 GGTAAAGCACAAGACGGTCAAAAT 60.261 41.667 11.27 0.00 0.00 1.82
716 789 2.215196 GGTAAAGCACAAGACGGTCAA 58.785 47.619 11.27 0.00 0.00 3.18
717 790 1.139256 TGGTAAAGCACAAGACGGTCA 59.861 47.619 11.27 0.00 0.00 4.02
718 791 1.873698 TGGTAAAGCACAAGACGGTC 58.126 50.000 0.00 0.00 0.00 4.79
719 792 2.151202 CATGGTAAAGCACAAGACGGT 58.849 47.619 0.00 0.00 0.00 4.83
720 793 1.468520 CCATGGTAAAGCACAAGACGG 59.531 52.381 2.57 0.00 0.00 4.79
775 859 2.456119 CGCTTCCGGCTACTGCAAG 61.456 63.158 0.00 0.00 41.91 4.01
776 860 2.434185 CGCTTCCGGCTACTGCAA 60.434 61.111 0.00 0.00 41.91 4.08
777 861 2.835701 CTTCGCTTCCGGCTACTGCA 62.836 60.000 0.00 0.00 41.91 4.41
779 863 2.167861 GCTTCGCTTCCGGCTACTG 61.168 63.158 0.00 0.00 39.13 2.74
780 864 2.184579 GCTTCGCTTCCGGCTACT 59.815 61.111 0.00 0.00 39.13 2.57
781 865 3.255379 CGCTTCGCTTCCGGCTAC 61.255 66.667 0.00 0.00 39.13 3.58
808 892 3.971109 CTTTTCCCGTCCCCTCGCC 62.971 68.421 0.00 0.00 0.00 5.54
809 893 2.436115 CTTTTCCCGTCCCCTCGC 60.436 66.667 0.00 0.00 0.00 5.03
810 894 0.035739 TTTCTTTTCCCGTCCCCTCG 59.964 55.000 0.00 0.00 0.00 4.63
811 895 1.073444 AGTTTCTTTTCCCGTCCCCTC 59.927 52.381 0.00 0.00 0.00 4.30
812 896 1.146452 AGTTTCTTTTCCCGTCCCCT 58.854 50.000 0.00 0.00 0.00 4.79
813 897 1.244816 CAGTTTCTTTTCCCGTCCCC 58.755 55.000 0.00 0.00 0.00 4.81
814 898 0.596577 GCAGTTTCTTTTCCCGTCCC 59.403 55.000 0.00 0.00 0.00 4.46
815 899 1.535896 GAGCAGTTTCTTTTCCCGTCC 59.464 52.381 0.00 0.00 0.00 4.79
816 900 1.535896 GGAGCAGTTTCTTTTCCCGTC 59.464 52.381 0.00 0.00 0.00 4.79
817 901 1.605753 GGAGCAGTTTCTTTTCCCGT 58.394 50.000 0.00 0.00 0.00 5.28
818 902 0.517316 CGGAGCAGTTTCTTTTCCCG 59.483 55.000 0.00 0.00 0.00 5.14
819 903 1.892209 TCGGAGCAGTTTCTTTTCCC 58.108 50.000 0.00 0.00 0.00 3.97
820 904 2.226674 CCTTCGGAGCAGTTTCTTTTCC 59.773 50.000 0.00 0.00 0.00 3.13
821 905 3.139077 TCCTTCGGAGCAGTTTCTTTTC 58.861 45.455 0.00 0.00 0.00 2.29
822 906 3.208747 TCCTTCGGAGCAGTTTCTTTT 57.791 42.857 0.00 0.00 0.00 2.27
823 907 2.930826 TCCTTCGGAGCAGTTTCTTT 57.069 45.000 0.00 0.00 0.00 2.52
824 908 2.368875 TCTTCCTTCGGAGCAGTTTCTT 59.631 45.455 0.00 0.00 31.21 2.52
825 909 1.971357 TCTTCCTTCGGAGCAGTTTCT 59.029 47.619 0.00 0.00 31.21 2.52
826 910 2.457366 TCTTCCTTCGGAGCAGTTTC 57.543 50.000 0.00 0.00 31.21 2.78
827 911 4.762289 ATATCTTCCTTCGGAGCAGTTT 57.238 40.909 0.00 0.00 31.21 2.66
828 912 4.446371 CAATATCTTCCTTCGGAGCAGTT 58.554 43.478 0.00 0.00 31.21 3.16
829 913 3.181461 CCAATATCTTCCTTCGGAGCAGT 60.181 47.826 0.00 0.00 31.21 4.40
830 914 3.397482 CCAATATCTTCCTTCGGAGCAG 58.603 50.000 0.00 0.00 31.21 4.24
831 915 2.104792 CCCAATATCTTCCTTCGGAGCA 59.895 50.000 0.00 0.00 31.21 4.26
832 916 2.551071 CCCCAATATCTTCCTTCGGAGC 60.551 54.545 0.00 0.00 31.21 4.70
833 917 2.706190 ACCCCAATATCTTCCTTCGGAG 59.294 50.000 0.00 0.00 31.21 4.63
834 918 2.771688 ACCCCAATATCTTCCTTCGGA 58.228 47.619 0.00 0.00 0.00 4.55
835 919 3.477530 GAACCCCAATATCTTCCTTCGG 58.522 50.000 0.00 0.00 0.00 4.30
836 920 3.477530 GGAACCCCAATATCTTCCTTCG 58.522 50.000 0.00 0.00 31.11 3.79
853 937 0.804989 CGTGGAGAAGCATTGGGAAC 59.195 55.000 0.00 0.00 0.00 3.62
854 938 0.960364 GCGTGGAGAAGCATTGGGAA 60.960 55.000 0.00 0.00 0.00 3.97
855 939 1.377202 GCGTGGAGAAGCATTGGGA 60.377 57.895 0.00 0.00 0.00 4.37
856 940 2.409870 GGCGTGGAGAAGCATTGGG 61.410 63.158 0.00 0.00 34.54 4.12
857 941 2.409870 GGGCGTGGAGAAGCATTGG 61.410 63.158 0.00 0.00 34.54 3.16
858 942 1.243342 TTGGGCGTGGAGAAGCATTG 61.243 55.000 0.00 0.00 34.54 2.82
859 943 1.074775 TTGGGCGTGGAGAAGCATT 59.925 52.632 0.00 0.00 34.54 3.56
860 944 1.675641 GTTGGGCGTGGAGAAGCAT 60.676 57.895 0.00 0.00 34.54 3.79
861 945 2.281484 GTTGGGCGTGGAGAAGCA 60.281 61.111 0.00 0.00 34.54 3.91
862 946 3.423154 CGTTGGGCGTGGAGAAGC 61.423 66.667 0.00 0.00 35.54 3.86
863 947 1.738099 CTCGTTGGGCGTGGAGAAG 60.738 63.158 0.00 0.00 42.13 2.85
864 948 1.541310 ATCTCGTTGGGCGTGGAGAA 61.541 55.000 0.00 0.00 38.85 2.87
865 949 1.982395 ATCTCGTTGGGCGTGGAGA 60.982 57.895 0.00 0.00 42.13 3.71
866 950 1.811266 CATCTCGTTGGGCGTGGAG 60.811 63.158 0.00 0.00 42.13 3.86
867 951 2.264480 CATCTCGTTGGGCGTGGA 59.736 61.111 0.00 0.00 42.13 4.02
868 952 3.499737 GCATCTCGTTGGGCGTGG 61.500 66.667 0.00 0.00 42.13 4.94
869 953 3.853330 CGCATCTCGTTGGGCGTG 61.853 66.667 0.00 0.00 44.11 5.34
873 957 2.745884 TTGGCGCATCTCGTTGGG 60.746 61.111 10.83 0.00 41.07 4.12
874 958 2.480555 GTTGGCGCATCTCGTTGG 59.519 61.111 10.83 0.00 41.07 3.77
875 959 1.970917 GAGGTTGGCGCATCTCGTTG 61.971 60.000 10.83 0.00 41.07 4.10
876 960 1.741770 GAGGTTGGCGCATCTCGTT 60.742 57.895 10.83 0.00 41.07 3.85
877 961 2.125512 GAGGTTGGCGCATCTCGT 60.126 61.111 10.83 0.00 41.07 4.18
878 962 3.257561 CGAGGTTGGCGCATCTCG 61.258 66.667 14.89 14.89 42.09 4.04
879 963 2.892425 CCGAGGTTGGCGCATCTC 60.892 66.667 10.83 3.42 0.00 2.75
880 964 4.473520 CCCGAGGTTGGCGCATCT 62.474 66.667 10.83 0.00 0.00 2.90
881 965 3.757248 ATCCCGAGGTTGGCGCATC 62.757 63.158 10.83 0.00 0.00 3.91
882 966 3.797353 ATCCCGAGGTTGGCGCAT 61.797 61.111 10.83 0.00 0.00 4.73
883 967 4.776322 CATCCCGAGGTTGGCGCA 62.776 66.667 10.83 0.00 0.00 6.09
885 969 3.976701 AAGCATCCCGAGGTTGGCG 62.977 63.158 0.00 0.00 0.00 5.69
886 970 0.393808 TAAAGCATCCCGAGGTTGGC 60.394 55.000 0.00 0.00 0.00 4.52
887 971 1.065418 AGTAAAGCATCCCGAGGTTGG 60.065 52.381 0.00 0.00 0.00 3.77
888 972 2.280628 GAGTAAAGCATCCCGAGGTTG 58.719 52.381 0.00 0.00 0.00 3.77
889 973 1.209747 GGAGTAAAGCATCCCGAGGTT 59.790 52.381 0.00 0.00 0.00 3.50
890 974 0.831307 GGAGTAAAGCATCCCGAGGT 59.169 55.000 0.00 0.00 0.00 3.85
891 975 1.123928 AGGAGTAAAGCATCCCGAGG 58.876 55.000 0.00 0.00 36.14 4.63
892 976 3.492829 GGTTAGGAGTAAAGCATCCCGAG 60.493 52.174 0.00 0.00 36.14 4.63
893 977 2.433239 GGTTAGGAGTAAAGCATCCCGA 59.567 50.000 0.00 0.00 36.14 5.14
894 978 2.484947 GGGTTAGGAGTAAAGCATCCCG 60.485 54.545 0.00 0.00 36.14 5.14
895 979 2.158652 GGGGTTAGGAGTAAAGCATCCC 60.159 54.545 0.00 0.00 36.14 3.85
896 980 2.508300 TGGGGTTAGGAGTAAAGCATCC 59.492 50.000 0.00 0.00 35.71 3.51
897 981 3.542648 GTGGGGTTAGGAGTAAAGCATC 58.457 50.000 0.00 0.00 0.00 3.91
898 982 2.093128 CGTGGGGTTAGGAGTAAAGCAT 60.093 50.000 0.00 0.00 0.00 3.79
899 983 1.276989 CGTGGGGTTAGGAGTAAAGCA 59.723 52.381 0.00 0.00 0.00 3.91
900 984 1.406477 CCGTGGGGTTAGGAGTAAAGC 60.406 57.143 0.00 0.00 0.00 3.51
901 985 1.406477 GCCGTGGGGTTAGGAGTAAAG 60.406 57.143 0.00 0.00 34.97 1.85
902 986 0.614812 GCCGTGGGGTTAGGAGTAAA 59.385 55.000 0.00 0.00 34.97 2.01
903 987 1.606885 CGCCGTGGGGTTAGGAGTAA 61.607 60.000 0.00 0.00 34.97 2.24
904 988 2.053865 CGCCGTGGGGTTAGGAGTA 61.054 63.158 0.00 0.00 34.97 2.59
905 989 3.387947 CGCCGTGGGGTTAGGAGT 61.388 66.667 0.00 0.00 34.97 3.85
906 990 4.157120 CCGCCGTGGGGTTAGGAG 62.157 72.222 2.06 0.00 34.97 3.69
927 1011 0.232303 GCGATTTTATGCCCGTCTCG 59.768 55.000 0.00 0.00 0.00 4.04
928 1012 1.583054 AGCGATTTTATGCCCGTCTC 58.417 50.000 0.00 0.00 0.00 3.36
929 1013 2.038387 AAGCGATTTTATGCCCGTCT 57.962 45.000 0.00 0.00 0.00 4.18
930 1014 2.354821 AGAAAGCGATTTTATGCCCGTC 59.645 45.455 0.00 0.00 0.00 4.79
931 1015 2.365582 AGAAAGCGATTTTATGCCCGT 58.634 42.857 0.00 0.00 0.00 5.28
932 1016 3.420839 AAGAAAGCGATTTTATGCCCG 57.579 42.857 0.00 0.00 0.00 6.13
933 1017 4.800471 CAGAAAGAAAGCGATTTTATGCCC 59.200 41.667 0.00 0.00 0.00 5.36
934 1018 5.402398 ACAGAAAGAAAGCGATTTTATGCC 58.598 37.500 0.00 0.00 0.00 4.40
935 1019 6.688813 CCTACAGAAAGAAAGCGATTTTATGC 59.311 38.462 0.00 0.00 0.00 3.14
936 1020 7.065803 TCCCTACAGAAAGAAAGCGATTTTATG 59.934 37.037 0.00 0.00 0.00 1.90
937 1021 7.110155 TCCCTACAGAAAGAAAGCGATTTTAT 58.890 34.615 0.00 0.00 0.00 1.40
938 1022 6.469410 TCCCTACAGAAAGAAAGCGATTTTA 58.531 36.000 0.00 0.00 0.00 1.52
939 1023 5.313712 TCCCTACAGAAAGAAAGCGATTTT 58.686 37.500 0.00 0.00 0.00 1.82
940 1024 4.906618 TCCCTACAGAAAGAAAGCGATTT 58.093 39.130 0.00 0.00 0.00 2.17
941 1025 4.508662 CTCCCTACAGAAAGAAAGCGATT 58.491 43.478 0.00 0.00 0.00 3.34
942 1026 3.118592 CCTCCCTACAGAAAGAAAGCGAT 60.119 47.826 0.00 0.00 0.00 4.58
943 1027 2.233922 CCTCCCTACAGAAAGAAAGCGA 59.766 50.000 0.00 0.00 0.00 4.93
944 1028 2.233922 TCCTCCCTACAGAAAGAAAGCG 59.766 50.000 0.00 0.00 0.00 4.68
945 1029 3.601435 GTCCTCCCTACAGAAAGAAAGC 58.399 50.000 0.00 0.00 0.00 3.51
946 1030 3.368531 CCGTCCTCCCTACAGAAAGAAAG 60.369 52.174 0.00 0.00 0.00 2.62
947 1031 2.565834 CCGTCCTCCCTACAGAAAGAAA 59.434 50.000 0.00 0.00 0.00 2.52
948 1032 2.176889 CCGTCCTCCCTACAGAAAGAA 58.823 52.381 0.00 0.00 0.00 2.52
949 1033 1.356738 TCCGTCCTCCCTACAGAAAGA 59.643 52.381 0.00 0.00 0.00 2.52
950 1034 1.848652 TCCGTCCTCCCTACAGAAAG 58.151 55.000 0.00 0.00 0.00 2.62
951 1035 2.108168 CATCCGTCCTCCCTACAGAAA 58.892 52.381 0.00 0.00 0.00 2.52
952 1036 1.286849 TCATCCGTCCTCCCTACAGAA 59.713 52.381 0.00 0.00 0.00 3.02
953 1037 0.924090 TCATCCGTCCTCCCTACAGA 59.076 55.000 0.00 0.00 0.00 3.41
954 1038 2.002505 ATCATCCGTCCTCCCTACAG 57.997 55.000 0.00 0.00 0.00 2.74
955 1039 2.317040 GAATCATCCGTCCTCCCTACA 58.683 52.381 0.00 0.00 0.00 2.74
956 1040 2.317040 TGAATCATCCGTCCTCCCTAC 58.683 52.381 0.00 0.00 0.00 3.18
957 1041 2.767644 TGAATCATCCGTCCTCCCTA 57.232 50.000 0.00 0.00 0.00 3.53
958 1042 1.765314 CTTGAATCATCCGTCCTCCCT 59.235 52.381 0.00 0.00 0.00 4.20
959 1043 1.486726 ACTTGAATCATCCGTCCTCCC 59.513 52.381 0.00 0.00 0.00 4.30
960 1044 2.990066 ACTTGAATCATCCGTCCTCC 57.010 50.000 0.00 0.00 0.00 4.30
961 1045 4.372656 CCTTACTTGAATCATCCGTCCTC 58.627 47.826 0.00 0.00 0.00 3.71
962 1046 3.134804 CCCTTACTTGAATCATCCGTCCT 59.865 47.826 0.00 0.00 0.00 3.85
963 1047 3.467803 CCCTTACTTGAATCATCCGTCC 58.532 50.000 0.00 0.00 0.00 4.79
964 1048 2.872858 GCCCTTACTTGAATCATCCGTC 59.127 50.000 0.00 0.00 0.00 4.79
965 1049 2.505819 AGCCCTTACTTGAATCATCCGT 59.494 45.455 0.00 0.00 0.00 4.69
966 1050 2.874701 CAGCCCTTACTTGAATCATCCG 59.125 50.000 0.00 0.00 0.00 4.18
967 1051 4.133078 CTCAGCCCTTACTTGAATCATCC 58.867 47.826 0.00 0.00 0.00 3.51
968 1052 5.028549 TCTCAGCCCTTACTTGAATCATC 57.971 43.478 0.00 0.00 0.00 2.92
969 1053 4.685575 GCTCTCAGCCCTTACTTGAATCAT 60.686 45.833 0.00 0.00 34.48 2.45
970 1054 3.369892 GCTCTCAGCCCTTACTTGAATCA 60.370 47.826 0.00 0.00 34.48 2.57
971 1055 3.202097 GCTCTCAGCCCTTACTTGAATC 58.798 50.000 0.00 0.00 34.48 2.52
972 1056 2.573462 TGCTCTCAGCCCTTACTTGAAT 59.427 45.455 0.00 0.00 41.51 2.57
973 1057 1.977854 TGCTCTCAGCCCTTACTTGAA 59.022 47.619 0.00 0.00 41.51 2.69
974 1058 1.552337 CTGCTCTCAGCCCTTACTTGA 59.448 52.381 0.00 0.00 41.51 3.02
975 1059 2.021355 CTGCTCTCAGCCCTTACTTG 57.979 55.000 0.00 0.00 41.51 3.16
985 1069 1.664659 CTTCATTTCGGCTGCTCTCAG 59.335 52.381 0.00 0.00 43.16 3.35
986 1070 1.002430 ACTTCATTTCGGCTGCTCTCA 59.998 47.619 0.00 0.00 0.00 3.27
987 1071 1.731720 ACTTCATTTCGGCTGCTCTC 58.268 50.000 0.00 0.00 0.00 3.20
988 1072 2.191128 AACTTCATTTCGGCTGCTCT 57.809 45.000 0.00 0.00 0.00 4.09
989 1073 2.997485 AAACTTCATTTCGGCTGCTC 57.003 45.000 0.00 0.00 0.00 4.26
998 1082 6.980397 CCTGCAAACAACTCTAAACTTCATTT 59.020 34.615 0.00 0.00 0.00 2.32
1110 1194 7.759433 ACACCATTTTCTTTAAGTGTGAGTTTG 59.241 33.333 0.00 0.00 37.10 2.93
1122 1206 7.638444 TCCATGAGGATACACCATTTTCTTTA 58.362 34.615 0.00 0.00 39.61 1.85
1144 1229 2.092968 CCATACAGCCTAGTTGCTTCCA 60.093 50.000 0.00 0.00 40.32 3.53
1148 1233 0.839946 CCCCATACAGCCTAGTTGCT 59.160 55.000 0.00 0.00 44.00 3.91
1193 1278 0.911769 AATCGTTGGGCCTGATCTCA 59.088 50.000 4.53 0.00 0.00 3.27
1197 1282 2.238646 TCTTGTAATCGTTGGGCCTGAT 59.761 45.455 4.53 2.63 0.00 2.90
1234 1319 0.606401 CTCGGCACTGTTGGGTTCAT 60.606 55.000 0.00 0.00 0.00 2.57
1238 1323 3.953775 CCCTCGGCACTGTTGGGT 61.954 66.667 0.00 0.00 33.49 4.51
1248 1333 1.271762 ACTTTTAGTTTCCCCCTCGGC 60.272 52.381 0.00 0.00 0.00 5.54
1257 1354 4.215613 CACAGTAGGCCCACTTTTAGTTTC 59.784 45.833 0.00 0.00 0.00 2.78
1270 1367 0.391793 GTCCTCAAGCACAGTAGGCC 60.392 60.000 0.00 0.00 0.00 5.19
1313 1410 2.355193 GGGCTTCAGAGTCTCGGCT 61.355 63.158 0.00 0.00 0.00 5.52
1333 1430 2.611751 GTCATGTATATGCGCCACAACA 59.388 45.455 4.18 4.95 34.21 3.33
1335 1432 2.217750 GGTCATGTATATGCGCCACAA 58.782 47.619 4.18 0.00 34.21 3.33
1338 1435 0.320334 CGGGTCATGTATATGCGCCA 60.320 55.000 4.18 0.00 33.55 5.69
1385 1482 5.529289 TCCTGATAGGTCTCCACATAGTTT 58.471 41.667 0.00 0.00 36.53 2.66
1489 1586 1.074775 GATTGTGGGTGTGGAGGCA 59.925 57.895 0.00 0.00 0.00 4.75
1498 1601 3.009723 GTTCATGACGATGATTGTGGGT 58.990 45.455 0.00 0.00 38.43 4.51
1502 1605 5.947228 AACAAGTTCATGACGATGATTGT 57.053 34.783 0.00 0.00 40.89 2.71
1543 1647 9.838339 ACTTTAAACTATGAGTCCTAATGATGG 57.162 33.333 0.00 0.00 0.00 3.51
1678 1787 1.942657 CACATAACCTTCATCAGCGGG 59.057 52.381 0.00 0.00 0.00 6.13
1680 1789 3.935203 AGTTCACATAACCTTCATCAGCG 59.065 43.478 0.00 0.00 0.00 5.18
1687 1796 8.542497 TGTACAATACAGTTCACATAACCTTC 57.458 34.615 0.00 0.00 34.06 3.46
1713 1822 3.728845 AGAACAACGTCTGTAGCAACAT 58.271 40.909 0.00 0.00 37.23 2.71
1722 1831 1.070577 CAAGCCGAAGAACAACGTCTG 60.071 52.381 0.00 0.00 0.00 3.51
1723 1832 1.217882 CAAGCCGAAGAACAACGTCT 58.782 50.000 0.00 0.00 0.00 4.18
1770 1879 7.566760 TCTTTCTGTTTTTCTAAGCATCACA 57.433 32.000 0.00 0.00 0.00 3.58
1783 1892 8.409358 AGCATACTATGGTTTCTTTCTGTTTT 57.591 30.769 0.00 0.00 37.84 2.43
1858 5395 3.011144 TGCTCATTCTAAAACCCCCATGA 59.989 43.478 0.00 0.00 0.00 3.07
1861 5398 3.627237 GGATGCTCATTCTAAAACCCCCA 60.627 47.826 0.00 0.00 0.00 4.96
1867 5404 4.705991 TGCACATGGATGCTCATTCTAAAA 59.294 37.500 9.44 0.00 46.28 1.52
1868 5405 4.271661 TGCACATGGATGCTCATTCTAAA 58.728 39.130 9.44 0.00 46.28 1.85
1916 5453 3.925299 GTGAGGCCGTTAGTTCTAACTTC 59.075 47.826 17.03 10.14 40.37 3.01
1982 5809 4.694509 GCATGTGTCTCAGTCTTCATCTTT 59.305 41.667 0.00 0.00 0.00 2.52
1994 5821 2.265739 GGGCGAGCATGTGTCTCA 59.734 61.111 0.00 0.00 0.00 3.27
1996 5823 2.267006 CTGGGCGAGCATGTGTCT 59.733 61.111 0.00 0.00 0.00 3.41
1999 5826 3.190849 CGACTGGGCGAGCATGTG 61.191 66.667 0.00 0.00 0.00 3.21
2001 5828 4.147449 TCCGACTGGGCGAGCATG 62.147 66.667 0.00 0.00 35.24 4.06
2002 5829 3.842923 CTCCGACTGGGCGAGCAT 61.843 66.667 0.00 0.00 35.24 3.79
2022 5849 2.005960 CTGGTCCTTCGGCGTAGGAG 62.006 65.000 31.73 18.49 42.31 3.69
2042 5869 1.228124 TTTGTGAGGCCTTGGTCGG 60.228 57.895 6.77 0.00 0.00 4.79
2076 5903 0.937304 CCCATCTACAAACCGATGCG 59.063 55.000 0.00 0.00 36.55 4.73
2085 5912 1.220749 GAGCGTGGCCCATCTACAA 59.779 57.895 0.00 0.00 0.00 2.41
2100 5927 0.741221 GACAATGACGGGAGGTGAGC 60.741 60.000 0.00 0.00 0.00 4.26
2102 5929 0.544357 AGGACAATGACGGGAGGTGA 60.544 55.000 0.00 0.00 0.00 4.02
2131 5958 1.924731 TCAGACACCTGGGTCACTAG 58.075 55.000 14.89 0.00 40.76 2.57
2135 5962 2.571653 CCTTATTCAGACACCTGGGTCA 59.428 50.000 14.89 0.00 40.76 4.02
2139 5966 4.442192 GCTAGTCCTTATTCAGACACCTGG 60.442 50.000 0.00 0.00 40.76 4.45
2141 5968 4.404073 CAGCTAGTCCTTATTCAGACACCT 59.596 45.833 0.00 0.00 35.38 4.00
2142 5969 4.442192 CCAGCTAGTCCTTATTCAGACACC 60.442 50.000 0.00 0.00 35.38 4.16
2143 5970 4.402793 TCCAGCTAGTCCTTATTCAGACAC 59.597 45.833 0.00 0.00 35.38 3.67
2144 5971 4.402793 GTCCAGCTAGTCCTTATTCAGACA 59.597 45.833 0.00 0.00 35.38 3.41
2145 5972 4.647399 AGTCCAGCTAGTCCTTATTCAGAC 59.353 45.833 0.00 0.00 0.00 3.51
2147 5974 4.646945 TCAGTCCAGCTAGTCCTTATTCAG 59.353 45.833 0.00 0.00 0.00 3.02
2149 5976 5.128008 ACTTCAGTCCAGCTAGTCCTTATTC 59.872 44.000 0.00 0.00 0.00 1.75
2150 5977 5.026790 ACTTCAGTCCAGCTAGTCCTTATT 58.973 41.667 0.00 0.00 0.00 1.40
2152 5979 3.764434 CACTTCAGTCCAGCTAGTCCTTA 59.236 47.826 0.00 0.00 0.00 2.69
2153 5980 2.564947 CACTTCAGTCCAGCTAGTCCTT 59.435 50.000 0.00 0.00 0.00 3.36
2155 5982 1.404851 GCACTTCAGTCCAGCTAGTCC 60.405 57.143 0.00 0.00 0.00 3.85
2156 5983 1.548269 AGCACTTCAGTCCAGCTAGTC 59.452 52.381 0.00 0.00 33.06 2.59
2157 5984 1.548269 GAGCACTTCAGTCCAGCTAGT 59.452 52.381 0.00 0.00 35.36 2.57
2159 5986 0.898320 GGAGCACTTCAGTCCAGCTA 59.102 55.000 0.00 0.00 35.36 3.32
2160 5987 1.123861 TGGAGCACTTCAGTCCAGCT 61.124 55.000 0.00 0.00 35.36 4.24
2161 5988 0.250467 TTGGAGCACTTCAGTCCAGC 60.250 55.000 0.00 0.00 41.42 4.85
2162 5989 2.260844 TTTGGAGCACTTCAGTCCAG 57.739 50.000 0.00 0.00 41.42 3.86
2163 5990 2.727123 TTTTGGAGCACTTCAGTCCA 57.273 45.000 0.00 0.00 38.65 4.02
2164 5991 4.301628 CAAATTTTGGAGCACTTCAGTCC 58.698 43.478 0.97 0.00 0.00 3.85
2179 6006 2.424684 TTGGTAGGGCCCCAAATTTT 57.575 45.000 21.43 0.00 38.98 1.82
2194 6021 1.977129 CAAACATGACCCCCAATTGGT 59.023 47.619 22.91 4.63 39.32 3.67
2195 6022 1.278699 CCAAACATGACCCCCAATTGG 59.721 52.381 18.21 18.21 33.66 3.16
2196 6023 1.977129 ACCAAACATGACCCCCAATTG 59.023 47.619 0.00 0.00 0.00 2.32
2197 6024 2.256306 GACCAAACATGACCCCCAATT 58.744 47.619 0.00 0.00 0.00 2.32
2201 6028 0.178975 TGTGACCAAACATGACCCCC 60.179 55.000 0.00 0.00 0.00 5.40
2217 6044 2.639286 GAACAAGCAGCCCGTGTG 59.361 61.111 0.00 0.00 36.26 3.82
2218 6045 2.594592 GGAACAAGCAGCCCGTGT 60.595 61.111 0.00 0.00 37.78 4.49
2221 6048 3.058160 CCAGGAACAAGCAGCCCG 61.058 66.667 0.00 0.00 0.00 6.13
2233 6060 3.731431 TGAATTAGGCCTAGAACCAGGA 58.269 45.455 13.36 0.00 38.00 3.86
2239 6066 3.583228 TCGGGATGAATTAGGCCTAGAA 58.417 45.455 13.36 0.57 0.00 2.10
2244 6071 2.039084 AGACATCGGGATGAATTAGGCC 59.961 50.000 15.17 0.00 41.20 5.19
2284 6111 6.127925 TGGTATGTACTCACTAGTAAACCACG 60.128 42.308 0.00 0.00 39.95 4.94
2295 6122 7.093068 TGGTAATGTTCATGGTATGTACTCACT 60.093 37.037 0.00 0.00 32.55 3.41
2296 6123 7.045416 TGGTAATGTTCATGGTATGTACTCAC 58.955 38.462 0.00 0.00 32.55 3.51
2298 6125 7.931407 TGATGGTAATGTTCATGGTATGTACTC 59.069 37.037 0.00 0.00 32.55 2.59
2401 6299 3.126514 CGTATGGGTATAGTACTGCTCCG 59.873 52.174 5.39 0.00 0.00 4.63
2439 6337 4.832248 TCACCACCATACATCAAGTCTTC 58.168 43.478 0.00 0.00 0.00 2.87
2460 6358 7.710896 ACAGGTACCGTAGTTGTAATTATCTC 58.289 38.462 6.18 0.00 0.00 2.75
2461 6359 7.651027 ACAGGTACCGTAGTTGTAATTATCT 57.349 36.000 6.18 0.00 0.00 1.98
2462 6360 8.624776 AGTACAGGTACCGTAGTTGTAATTATC 58.375 37.037 11.39 1.64 36.75 1.75
2463 6361 8.525290 AGTACAGGTACCGTAGTTGTAATTAT 57.475 34.615 11.39 0.00 36.75 1.28
2464 6362 7.938140 AGTACAGGTACCGTAGTTGTAATTA 57.062 36.000 11.39 0.00 36.75 1.40
2465 6363 6.840780 AGTACAGGTACCGTAGTTGTAATT 57.159 37.500 11.39 2.83 36.75 1.40
2466 6364 7.995488 AGATAGTACAGGTACCGTAGTTGTAAT 59.005 37.037 21.36 17.65 36.75 1.89
2467 6365 7.280876 CAGATAGTACAGGTACCGTAGTTGTAA 59.719 40.741 21.36 10.10 36.75 2.41
2468 6366 6.763135 CAGATAGTACAGGTACCGTAGTTGTA 59.237 42.308 21.36 15.03 36.75 2.41
2469 6367 5.587844 CAGATAGTACAGGTACCGTAGTTGT 59.412 44.000 21.36 15.85 36.75 3.32
2470 6368 5.008415 CCAGATAGTACAGGTACCGTAGTTG 59.992 48.000 21.36 15.89 36.75 3.16
2471 6369 5.128919 CCAGATAGTACAGGTACCGTAGTT 58.871 45.833 21.36 13.56 36.75 2.24
2472 6370 4.712476 CCAGATAGTACAGGTACCGTAGT 58.288 47.826 20.52 20.52 36.75 2.73
2473 6371 3.501445 GCCAGATAGTACAGGTACCGTAG 59.499 52.174 14.33 8.29 36.75 3.51
2474 6372 3.117926 TGCCAGATAGTACAGGTACCGTA 60.118 47.826 6.18 9.22 36.75 4.02
2475 6373 2.305009 GCCAGATAGTACAGGTACCGT 58.695 52.381 6.18 10.25 36.75 4.83
2476 6374 2.034305 GTGCCAGATAGTACAGGTACCG 59.966 54.545 6.18 4.16 36.75 4.02
2477 6375 2.034305 CGTGCCAGATAGTACAGGTACC 59.966 54.545 2.73 2.73 36.75 3.34
2478 6376 2.686915 ACGTGCCAGATAGTACAGGTAC 59.313 50.000 1.33 1.33 36.35 3.34
2479 6377 3.008835 ACGTGCCAGATAGTACAGGTA 57.991 47.619 0.00 0.00 30.06 3.08
2480 6378 1.848652 ACGTGCCAGATAGTACAGGT 58.151 50.000 0.00 0.00 0.00 4.00
2481 6379 3.129813 TGTTACGTGCCAGATAGTACAGG 59.870 47.826 0.00 0.00 0.00 4.00
2482 6380 4.365899 TGTTACGTGCCAGATAGTACAG 57.634 45.455 0.00 0.00 0.00 2.74
2483 6381 4.460034 TCTTGTTACGTGCCAGATAGTACA 59.540 41.667 0.00 0.00 0.00 2.90
2484 6382 4.990257 TCTTGTTACGTGCCAGATAGTAC 58.010 43.478 0.00 0.00 0.00 2.73
2485 6383 5.393787 CCTTCTTGTTACGTGCCAGATAGTA 60.394 44.000 0.00 0.00 0.00 1.82
2486 6384 4.495422 CTTCTTGTTACGTGCCAGATAGT 58.505 43.478 0.00 0.00 0.00 2.12
2487 6385 3.865745 CCTTCTTGTTACGTGCCAGATAG 59.134 47.826 0.00 0.00 0.00 2.08
2488 6386 3.259876 ACCTTCTTGTTACGTGCCAGATA 59.740 43.478 0.00 0.00 0.00 1.98
2489 6387 2.038557 ACCTTCTTGTTACGTGCCAGAT 59.961 45.455 0.00 0.00 0.00 2.90
2490 6388 1.414919 ACCTTCTTGTTACGTGCCAGA 59.585 47.619 0.00 0.00 0.00 3.86
2491 6389 1.798813 GACCTTCTTGTTACGTGCCAG 59.201 52.381 0.00 0.00 0.00 4.85
2492 6390 1.541670 GGACCTTCTTGTTACGTGCCA 60.542 52.381 0.00 0.00 0.00 4.92
2493 6391 1.154197 GGACCTTCTTGTTACGTGCC 58.846 55.000 0.00 0.00 0.00 5.01
2494 6392 1.798813 CAGGACCTTCTTGTTACGTGC 59.201 52.381 0.00 0.00 0.00 5.34
2495 6393 2.413837 CCAGGACCTTCTTGTTACGTG 58.586 52.381 0.00 0.00 0.00 4.49
2496 6394 1.270678 GCCAGGACCTTCTTGTTACGT 60.271 52.381 0.00 0.00 0.00 3.57
2497 6395 1.270625 TGCCAGGACCTTCTTGTTACG 60.271 52.381 0.00 0.00 0.00 3.18
2498 6396 2.561478 TGCCAGGACCTTCTTGTTAC 57.439 50.000 0.00 0.00 0.00 2.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.