Multiple sequence alignment - TraesCS3D01G325300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G325300 chr3D 100.000 3635 0 0 1 3635 438059753 438063387 0.000000e+00 6713.0
1 TraesCS3D01G325300 chr3D 86.408 206 15 8 18 213 589698124 589698326 2.840000e-51 213.0
2 TraesCS3D01G325300 chr3D 95.918 49 0 2 3171 3217 438062883 438062931 1.080000e-10 78.7
3 TraesCS3D01G325300 chr3D 95.918 49 0 2 3131 3179 438062923 438062969 1.080000e-10 78.7
4 TraesCS3D01G325300 chr3B 94.609 1354 44 9 589 1917 573497142 573498491 0.000000e+00 2069.0
5 TraesCS3D01G325300 chr3B 94.082 828 30 7 1916 2740 573498528 573499339 0.000000e+00 1240.0
6 TraesCS3D01G325300 chr3B 88.158 380 39 6 216 593 420304744 420305119 7.160000e-122 448.0
7 TraesCS3D01G325300 chr3A 92.073 1375 58 22 593 1922 576280949 576282317 0.000000e+00 1888.0
8 TraesCS3D01G325300 chr3A 91.675 949 39 12 1971 2902 576282419 576283344 0.000000e+00 1279.0
9 TraesCS3D01G325300 chr3A 89.446 379 35 5 216 592 720854963 720854588 1.180000e-129 473.0
10 TraesCS3D01G325300 chr3A 83.333 222 24 8 1 211 549912025 549911806 3.700000e-45 193.0
11 TraesCS3D01G325300 chr1D 84.748 636 95 2 1985 2619 405807099 405807733 1.420000e-178 636.0
12 TraesCS3D01G325300 chr1D 84.578 415 62 2 1071 1484 405803405 405803818 9.390000e-111 411.0
13 TraesCS3D01G325300 chr1D 84.665 313 46 2 3224 3535 392788638 392788949 9.800000e-81 311.0
14 TraesCS3D01G325300 chr1D 83.721 215 17 13 17 217 218326550 218326760 1.720000e-43 187.0
15 TraesCS3D01G325300 chr1B 84.122 655 102 2 1985 2638 546149796 546150449 1.840000e-177 632.0
16 TraesCS3D01G325300 chr1B 85.301 415 59 2 1071 1484 546146388 546146801 9.330000e-116 427.0
17 TraesCS3D01G325300 chr1B 83.763 388 62 1 3224 3610 444348344 444347957 2.060000e-97 366.0
18 TraesCS3D01G325300 chr1A 83.788 660 105 2 1985 2643 501030470 501031128 3.080000e-175 625.0
19 TraesCS3D01G325300 chr1A 85.096 416 58 4 1071 1484 501026545 501026958 4.340000e-114 422.0
20 TraesCS3D01G325300 chr1A 85.333 225 18 8 3 213 559047404 559047627 6.110000e-53 219.0
21 TraesCS3D01G325300 chr5D 91.967 361 26 2 216 575 480153524 480153882 1.510000e-138 503.0
22 TraesCS3D01G325300 chr5D 90.526 380 29 5 216 592 543495661 543496036 2.520000e-136 496.0
23 TraesCS3D01G325300 chr5D 80.000 470 64 21 3126 3589 485378917 485379362 1.630000e-83 320.0
24 TraesCS3D01G325300 chr5D 86.161 224 14 10 1 215 543495369 543495584 3.650000e-55 226.0
25 TraesCS3D01G325300 chr5D 84.305 223 24 7 3 214 384481663 384481441 1.320000e-49 207.0
26 TraesCS3D01G325300 chr2B 90.130 385 28 8 216 592 5159207 5158825 3.260000e-135 492.0
27 TraesCS3D01G325300 chr2B 86.062 452 53 7 3147 3592 200085390 200085837 9.130000e-131 477.0
28 TraesCS3D01G325300 chr2B 84.579 214 25 4 3 211 212571443 212571653 4.760000e-49 206.0
29 TraesCS3D01G325300 chr4A 89.005 382 34 7 216 594 675598582 675598206 1.980000e-127 466.0
30 TraesCS3D01G325300 chr4A 86.598 194 11 8 35 215 675598850 675598659 2.210000e-47 200.0
31 TraesCS3D01G325300 chr5B 88.684 380 35 4 216 594 11304611 11304983 1.190000e-124 457.0
32 TraesCS3D01G325300 chr5B 79.853 407 67 10 3187 3590 276961091 276961485 2.140000e-72 283.0
33 TraesCS3D01G325300 chr5B 84.305 223 19 7 1 215 11304319 11304533 1.710000e-48 204.0
34 TraesCS3D01G325300 chr5B 74.586 362 58 11 3249 3610 429605929 429605602 1.060000e-25 128.0
35 TraesCS3D01G325300 chr4D 88.329 377 39 4 216 590 441078862 441078489 7.160000e-122 448.0
36 TraesCS3D01G325300 chr4D 83.420 386 64 0 3224 3609 14631978 14631593 3.450000e-95 359.0
37 TraesCS3D01G325300 chr4B 87.945 365 40 3 216 579 546822875 546822514 9.330000e-116 427.0
38 TraesCS3D01G325300 chr4B 82.781 453 75 3 3160 3612 237141413 237140964 5.650000e-108 401.0
39 TraesCS3D01G325300 chr4B 83.163 392 64 2 1097 1487 667903408 667903018 1.240000e-94 357.0
40 TraesCS3D01G325300 chr5A 83.544 395 63 2 1091 1484 706217424 706217817 5.730000e-98 368.0
41 TraesCS3D01G325300 chrUn 82.785 395 66 2 1091 1484 29730518 29730911 5.770000e-93 351.0
42 TraesCS3D01G325300 chrUn 82.278 395 68 2 1091 1484 29746523 29746916 1.250000e-89 340.0
43 TraesCS3D01G325300 chrUn 83.569 353 56 2 3211 3563 400893731 400894081 2.710000e-86 329.0
44 TraesCS3D01G325300 chr2A 83.235 340 57 0 3224 3563 674782019 674781680 2.730000e-81 313.0
45 TraesCS3D01G325300 chr7B 81.122 392 59 11 3209 3600 32413367 32413743 2.120000e-77 300.0
46 TraesCS3D01G325300 chr2D 87.225 227 27 2 3366 3590 432865263 432865489 1.300000e-64 257.0
47 TraesCS3D01G325300 chr7A 88.112 143 14 3 3046 3187 218251557 218251417 2.250000e-37 167.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G325300 chr3D 438059753 438063387 3634 False 2290.133333 6713 97.278667 1 3635 3 chr3D.!!$F2 3634
1 TraesCS3D01G325300 chr3B 573497142 573499339 2197 False 1654.500000 2069 94.345500 589 2740 2 chr3B.!!$F2 2151
2 TraesCS3D01G325300 chr3A 576280949 576283344 2395 False 1583.500000 1888 91.874000 593 2902 2 chr3A.!!$F1 2309
3 TraesCS3D01G325300 chr1D 405803405 405807733 4328 False 523.500000 636 84.663000 1071 2619 2 chr1D.!!$F3 1548
4 TraesCS3D01G325300 chr1B 546146388 546150449 4061 False 529.500000 632 84.711500 1071 2638 2 chr1B.!!$F1 1567
5 TraesCS3D01G325300 chr1A 501026545 501031128 4583 False 523.500000 625 84.442000 1071 2643 2 chr1A.!!$F2 1572
6 TraesCS3D01G325300 chr5D 543495369 543496036 667 False 361.000000 496 88.343500 1 592 2 chr5D.!!$F3 591
7 TraesCS3D01G325300 chr4A 675598206 675598850 644 True 333.000000 466 87.801500 35 594 2 chr4A.!!$R1 559
8 TraesCS3D01G325300 chr5B 11304319 11304983 664 False 330.500000 457 86.494500 1 594 2 chr5B.!!$F2 593

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
995 1127 0.734253 CGGGCGAGAAGAGAACAGTG 60.734 60.0 0.0 0.0 0.0 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2929 6185 0.105039 GCGTTGTATCTAGCCTGCCT 59.895 55.0 0.0 0.0 0.0 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
341 432 5.511202 GCCCAACATCCAAAATATACCCATG 60.511 44.000 0.00 0.00 0.00 3.66
350 441 6.663953 TCCAAAATATACCCATGAAAACCGAA 59.336 34.615 0.00 0.00 0.00 4.30
399 491 7.094549 ACGCAAACAGCCTAATAAGAAAACATA 60.095 33.333 0.00 0.00 41.38 2.29
442 534 6.496338 AAGAAATCGACTGACCCAAAATAC 57.504 37.500 0.00 0.00 0.00 1.89
443 535 5.556915 AGAAATCGACTGACCCAAAATACA 58.443 37.500 0.00 0.00 0.00 2.29
446 538 2.901192 TCGACTGACCCAAAATACAGGA 59.099 45.455 0.00 0.00 35.08 3.86
449 541 4.003648 GACTGACCCAAAATACAGGACAG 58.996 47.826 6.27 6.27 45.26 3.51
477 570 1.035139 GCCCAGCCCAATACAAGATG 58.965 55.000 0.00 0.00 0.00 2.90
488 581 4.381185 CCAATACAAGATGCAGCACACAAT 60.381 41.667 4.07 0.00 0.00 2.71
677 773 2.404215 ACAACAAACCTGAGACGATCG 58.596 47.619 14.88 14.88 0.00 3.69
787 886 1.078759 GAAGGACCACGCTCGACATG 61.079 60.000 0.00 0.00 0.00 3.21
790 889 1.352156 GGACCACGCTCGACATGAAC 61.352 60.000 0.00 0.00 0.00 3.18
901 1020 1.274167 GGAGTGTGTCCGTCCATACAA 59.726 52.381 2.26 0.00 34.84 2.41
991 1123 1.139947 CTCCGGGCGAGAAGAGAAC 59.860 63.158 0.00 0.00 41.63 3.01
995 1127 0.734253 CGGGCGAGAAGAGAACAGTG 60.734 60.000 0.00 0.00 0.00 3.66
1891 4563 2.224646 GGCCTCCTCTGGGTAATCAATC 60.225 54.545 0.00 0.00 0.00 2.67
1893 4565 3.117888 GCCTCCTCTGGGTAATCAATCAA 60.118 47.826 0.00 0.00 0.00 2.57
1894 4566 4.446889 GCCTCCTCTGGGTAATCAATCAAT 60.447 45.833 0.00 0.00 0.00 2.57
1910 4582 3.077229 TCAATTGAATTAATGCCGCCG 57.923 42.857 5.45 0.00 0.00 6.46
1922 4595 0.249699 TGCCGCCGTCCATATTAGTG 60.250 55.000 0.00 0.00 0.00 2.74
1950 4936 4.437255 CGATTTGATTTGATTCGCTCACCA 60.437 41.667 0.00 0.00 32.17 4.17
1951 4937 5.585390 GATTTGATTTGATTCGCTCACCAT 58.415 37.500 0.00 0.00 32.17 3.55
1962 4948 4.569761 TCGCTCACCATATTAGTCACTC 57.430 45.455 0.00 0.00 0.00 3.51
1963 4949 3.951680 TCGCTCACCATATTAGTCACTCA 59.048 43.478 0.00 0.00 0.00 3.41
1965 4951 4.202060 CGCTCACCATATTAGTCACTCACT 60.202 45.833 0.00 0.00 39.41 3.41
1966 4952 5.285651 GCTCACCATATTAGTCACTCACTC 58.714 45.833 0.00 0.00 36.43 3.51
1968 4954 6.208988 TCACCATATTAGTCACTCACTCAC 57.791 41.667 0.00 0.00 36.43 3.51
1969 4955 5.714806 TCACCATATTAGTCACTCACTCACA 59.285 40.000 0.00 0.00 36.43 3.58
1970 4956 6.381133 TCACCATATTAGTCACTCACTCACAT 59.619 38.462 0.00 0.00 36.43 3.21
1971 4957 6.478016 CACCATATTAGTCACTCACTCACATG 59.522 42.308 0.00 0.00 36.43 3.21
1972 4958 6.155221 ACCATATTAGTCACTCACTCACATGT 59.845 38.462 0.00 0.00 36.43 3.21
1973 4959 6.478016 CCATATTAGTCACTCACTCACATGTG 59.522 42.308 20.18 20.18 36.43 3.21
1974 4960 4.937201 TTAGTCACTCACTCACATGTGT 57.063 40.909 24.63 4.31 38.90 3.72
1975 4961 3.103447 AGTCACTCACTCACATGTGTG 57.897 47.619 24.63 23.70 46.91 3.82
2007 5247 4.094646 ATGATCACCGCCGGCACA 62.095 61.111 28.98 15.57 0.00 4.57
2091 5331 1.220477 GAAGGTGCAGGAGGAGCTC 59.780 63.158 4.71 4.71 43.46 4.09
2664 5904 4.530857 CTCCCATGCGTCCCGGAC 62.531 72.222 0.73 7.59 0.00 4.79
2666 5906 4.530857 CCCATGCGTCCCGGACTC 62.531 72.222 15.70 8.33 0.00 3.36
2667 5907 4.530857 CCATGCGTCCCGGACTCC 62.531 72.222 15.70 7.02 0.00 3.85
2668 5908 4.530857 CATGCGTCCCGGACTCCC 62.531 72.222 15.70 4.65 0.00 4.30
2685 5925 1.079543 CCGGTGGTTCAGAGCTCAG 60.080 63.158 17.77 8.39 0.00 3.35
2787 6036 6.684686 TCCATAAATATACTCGTGGTACAGC 58.315 40.000 0.00 0.00 41.80 4.40
2791 6040 5.784578 AATATACTCGTGGTACAGCATGA 57.215 39.130 0.00 3.52 41.80 3.07
2792 6041 5.784578 ATATACTCGTGGTACAGCATGAA 57.215 39.130 0.00 0.00 41.80 2.57
2793 6042 4.672587 ATACTCGTGGTACAGCATGAAT 57.327 40.909 0.00 0.00 41.80 2.57
2830 6079 7.576236 ACAATAGAACTTGTGTTTCTCAATCG 58.424 34.615 0.00 0.00 37.93 3.34
2831 6080 7.226720 ACAATAGAACTTGTGTTTCTCAATCGT 59.773 33.333 0.00 0.00 37.93 3.73
2846 6095 6.042777 TCTCAATCGTCAGGATTACAATCAC 58.957 40.000 4.45 0.00 43.52 3.06
2852 6101 4.499865 CGTCAGGATTACAATCACGGAGAT 60.500 45.833 4.45 0.00 39.09 2.75
2867 6121 2.539142 CGGAGATACAAGTTCGTCCTCG 60.539 54.545 0.00 0.00 38.55 4.63
2896 6152 4.003648 GAGCATAGCCAAACAACACTACT 58.996 43.478 0.00 0.00 0.00 2.57
2902 6158 4.398319 AGCCAAACAACACTACTATTGCT 58.602 39.130 0.00 0.00 0.00 3.91
2903 6159 4.216257 AGCCAAACAACACTACTATTGCTG 59.784 41.667 0.00 0.00 0.00 4.41
2904 6160 4.475944 CCAAACAACACTACTATTGCTGC 58.524 43.478 0.00 0.00 0.00 5.25
2905 6161 4.151070 CAAACAACACTACTATTGCTGCG 58.849 43.478 0.00 0.00 0.00 5.18
2906 6162 3.313012 ACAACACTACTATTGCTGCGA 57.687 42.857 0.00 0.00 0.00 5.10
2907 6163 2.993899 ACAACACTACTATTGCTGCGAC 59.006 45.455 0.00 0.00 0.00 5.19
2908 6164 3.254060 CAACACTACTATTGCTGCGACT 58.746 45.455 0.00 0.00 0.00 4.18
2909 6165 4.082408 ACAACACTACTATTGCTGCGACTA 60.082 41.667 0.00 0.00 0.00 2.59
2910 6166 4.294416 ACACTACTATTGCTGCGACTAG 57.706 45.455 0.00 0.00 0.00 2.57
2921 6177 3.553597 GCGACTAGCGTAAGAGCAT 57.446 52.632 8.08 0.00 43.41 3.79
2922 6178 1.400550 GCGACTAGCGTAAGAGCATC 58.599 55.000 8.08 0.00 43.41 3.91
2923 6179 1.002251 GCGACTAGCGTAAGAGCATCT 60.002 52.381 8.08 0.00 46.53 2.90
2924 6180 2.911120 CGACTAGCGTAAGAGCATCTC 58.089 52.381 0.00 0.00 39.22 2.75
2925 6181 2.350007 CGACTAGCGTAAGAGCATCTCC 60.350 54.545 0.00 0.00 39.22 3.71
2926 6182 4.842621 CGACTAGCGTAAGAGCATCTCCA 61.843 52.174 0.00 0.00 39.22 3.86
2927 6183 6.267956 CGACTAGCGTAAGAGCATCTCCAA 62.268 50.000 0.00 0.00 39.22 3.53
2934 6190 2.777969 GAGCATCTCCAACAGGCAG 58.222 57.895 0.00 0.00 0.00 4.85
2935 6191 0.747283 GAGCATCTCCAACAGGCAGG 60.747 60.000 0.00 0.00 0.00 4.85
2936 6192 2.413142 GCATCTCCAACAGGCAGGC 61.413 63.158 0.00 0.00 0.00 4.85
2937 6193 1.302285 CATCTCCAACAGGCAGGCT 59.698 57.895 0.00 0.00 0.00 4.58
2938 6194 0.543277 CATCTCCAACAGGCAGGCTA 59.457 55.000 0.00 0.00 0.00 3.93
2939 6195 0.835941 ATCTCCAACAGGCAGGCTAG 59.164 55.000 0.00 0.00 0.00 3.42
2940 6196 0.252239 TCTCCAACAGGCAGGCTAGA 60.252 55.000 0.00 0.00 0.00 2.43
2941 6197 0.835941 CTCCAACAGGCAGGCTAGAT 59.164 55.000 0.00 0.00 0.00 1.98
2942 6198 2.042464 CTCCAACAGGCAGGCTAGATA 58.958 52.381 0.00 0.00 0.00 1.98
2943 6199 1.762957 TCCAACAGGCAGGCTAGATAC 59.237 52.381 0.00 0.00 0.00 2.24
2944 6200 1.486310 CCAACAGGCAGGCTAGATACA 59.514 52.381 0.00 0.00 0.00 2.29
2945 6201 2.092968 CCAACAGGCAGGCTAGATACAA 60.093 50.000 0.00 0.00 0.00 2.41
2946 6202 2.939103 CAACAGGCAGGCTAGATACAAC 59.061 50.000 0.00 0.00 0.00 3.32
2947 6203 1.137086 ACAGGCAGGCTAGATACAACG 59.863 52.381 0.00 0.00 0.00 4.10
2948 6204 0.105039 AGGCAGGCTAGATACAACGC 59.895 55.000 0.00 0.00 0.00 4.84
2949 6205 1.215655 GGCAGGCTAGATACAACGCG 61.216 60.000 3.53 3.53 0.00 6.01
2950 6206 1.822250 GCAGGCTAGATACAACGCGC 61.822 60.000 5.73 0.00 0.00 6.86
2951 6207 1.299165 AGGCTAGATACAACGCGCG 60.299 57.895 30.96 30.96 0.00 6.86
2952 6208 2.539985 GCTAGATACAACGCGCGC 59.460 61.111 32.58 23.91 0.00 6.86
2977 6233 0.501015 AAAAAGTTTTTAGCGCGCGC 59.499 45.000 45.10 45.10 42.33 6.86
2999 6255 3.737172 CGGTTTGGCGCCCTTCAG 61.737 66.667 26.77 10.68 0.00 3.02
3000 6256 4.056125 GGTTTGGCGCCCTTCAGC 62.056 66.667 26.77 10.87 0.00 4.26
3001 6257 3.294493 GTTTGGCGCCCTTCAGCA 61.294 61.111 26.77 0.00 34.54 4.41
3002 6258 2.985282 TTTGGCGCCCTTCAGCAG 60.985 61.111 26.77 0.00 34.54 4.24
3009 6265 4.399395 CCCTTCAGCAGGCGCAGA 62.399 66.667 10.83 0.00 42.29 4.26
3010 6266 2.359107 CCTTCAGCAGGCGCAGAA 60.359 61.111 10.83 4.04 40.90 3.02
3011 6267 1.968017 CCTTCAGCAGGCGCAGAAA 60.968 57.895 10.83 0.00 42.33 2.52
3012 6268 1.518056 CCTTCAGCAGGCGCAGAAAA 61.518 55.000 10.83 0.00 42.33 2.29
3013 6269 0.311790 CTTCAGCAGGCGCAGAAAAA 59.688 50.000 10.83 0.00 42.33 1.94
3027 6283 2.405594 AAAAACTGCACGCGCGAA 59.594 50.000 39.36 20.09 42.97 4.70
3028 6284 1.226435 AAAAACTGCACGCGCGAAA 60.226 47.368 39.36 19.71 42.97 3.46
3029 6285 0.798771 AAAAACTGCACGCGCGAAAA 60.799 45.000 39.36 19.32 42.97 2.29
3030 6286 0.798771 AAAACTGCACGCGCGAAAAA 60.799 45.000 39.36 17.41 42.97 1.94
3031 6287 1.199852 AAACTGCACGCGCGAAAAAG 61.200 50.000 39.36 27.08 42.97 2.27
3032 6288 3.452668 CTGCACGCGCGAAAAAGC 61.453 61.111 39.36 28.20 42.97 3.51
3064 6320 3.028130 CGTCGGGTGCGCTCTATA 58.972 61.111 9.73 0.00 0.00 1.31
3065 6321 1.357690 CGTCGGGTGCGCTCTATAA 59.642 57.895 9.73 0.00 0.00 0.98
3066 6322 0.248743 CGTCGGGTGCGCTCTATAAA 60.249 55.000 9.73 0.00 0.00 1.40
3067 6323 1.799917 CGTCGGGTGCGCTCTATAAAA 60.800 52.381 9.73 0.00 0.00 1.52
3068 6324 1.591619 GTCGGGTGCGCTCTATAAAAC 59.408 52.381 9.73 0.00 0.00 2.43
3069 6325 0.935196 CGGGTGCGCTCTATAAAACC 59.065 55.000 9.73 4.62 0.00 3.27
3070 6326 1.306148 GGGTGCGCTCTATAAAACCC 58.694 55.000 9.73 11.08 40.48 4.11
3071 6327 1.134189 GGGTGCGCTCTATAAAACCCT 60.134 52.381 18.33 0.00 43.32 4.34
3072 6328 2.210961 GGTGCGCTCTATAAAACCCTC 58.789 52.381 9.73 0.00 0.00 4.30
3073 6329 1.859080 GTGCGCTCTATAAAACCCTCG 59.141 52.381 9.73 0.00 0.00 4.63
3074 6330 1.479323 TGCGCTCTATAAAACCCTCGT 59.521 47.619 9.73 0.00 0.00 4.18
3075 6331 1.859080 GCGCTCTATAAAACCCTCGTG 59.141 52.381 0.00 0.00 0.00 4.35
3076 6332 2.737679 GCGCTCTATAAAACCCTCGTGT 60.738 50.000 0.00 0.00 0.00 4.49
3077 6333 2.858344 CGCTCTATAAAACCCTCGTGTG 59.142 50.000 0.00 0.00 0.00 3.82
3078 6334 2.608090 GCTCTATAAAACCCTCGTGTGC 59.392 50.000 0.00 0.00 0.00 4.57
3079 6335 2.858344 CTCTATAAAACCCTCGTGTGCG 59.142 50.000 0.00 0.00 39.92 5.34
3080 6336 2.492881 TCTATAAAACCCTCGTGTGCGA 59.507 45.455 0.00 0.00 45.79 5.10
3099 6355 3.917760 CCCGCCATCCTCCGTCTC 61.918 72.222 0.00 0.00 0.00 3.36
3100 6356 2.835431 CCGCCATCCTCCGTCTCT 60.835 66.667 0.00 0.00 0.00 3.10
3101 6357 2.725008 CGCCATCCTCCGTCTCTC 59.275 66.667 0.00 0.00 0.00 3.20
3102 6358 1.826054 CGCCATCCTCCGTCTCTCT 60.826 63.158 0.00 0.00 0.00 3.10
3103 6359 1.791103 CGCCATCCTCCGTCTCTCTC 61.791 65.000 0.00 0.00 0.00 3.20
3104 6360 0.467290 GCCATCCTCCGTCTCTCTCT 60.467 60.000 0.00 0.00 0.00 3.10
3105 6361 1.604604 CCATCCTCCGTCTCTCTCTC 58.395 60.000 0.00 0.00 0.00 3.20
3106 6362 1.604604 CATCCTCCGTCTCTCTCTCC 58.395 60.000 0.00 0.00 0.00 3.71
3107 6363 1.142870 CATCCTCCGTCTCTCTCTCCT 59.857 57.143 0.00 0.00 0.00 3.69
3108 6364 1.291109 TCCTCCGTCTCTCTCTCCTT 58.709 55.000 0.00 0.00 0.00 3.36
3109 6365 1.636519 TCCTCCGTCTCTCTCTCCTTT 59.363 52.381 0.00 0.00 0.00 3.11
3110 6366 2.021457 CCTCCGTCTCTCTCTCCTTTC 58.979 57.143 0.00 0.00 0.00 2.62
3111 6367 2.356741 CCTCCGTCTCTCTCTCCTTTCT 60.357 54.545 0.00 0.00 0.00 2.52
3112 6368 3.352648 CTCCGTCTCTCTCTCCTTTCTT 58.647 50.000 0.00 0.00 0.00 2.52
3113 6369 3.349022 TCCGTCTCTCTCTCCTTTCTTC 58.651 50.000 0.00 0.00 0.00 2.87
3114 6370 3.009695 TCCGTCTCTCTCTCCTTTCTTCT 59.990 47.826 0.00 0.00 0.00 2.85
3115 6371 3.377172 CCGTCTCTCTCTCCTTTCTTCTC 59.623 52.174 0.00 0.00 0.00 2.87
3116 6372 3.377172 CGTCTCTCTCTCCTTTCTTCTCC 59.623 52.174 0.00 0.00 0.00 3.71
3117 6373 4.600062 GTCTCTCTCTCCTTTCTTCTCCT 58.400 47.826 0.00 0.00 0.00 3.69
3118 6374 4.640647 GTCTCTCTCTCCTTTCTTCTCCTC 59.359 50.000 0.00 0.00 0.00 3.71
3119 6375 3.616219 TCTCTCTCCTTTCTTCTCCTCG 58.384 50.000 0.00 0.00 0.00 4.63
3120 6376 2.096248 TCTCTCCTTTCTTCTCCTCGC 58.904 52.381 0.00 0.00 0.00 5.03
3121 6377 2.099405 CTCTCCTTTCTTCTCCTCGCT 58.901 52.381 0.00 0.00 0.00 4.93
3122 6378 2.495669 CTCTCCTTTCTTCTCCTCGCTT 59.504 50.000 0.00 0.00 0.00 4.68
3123 6379 2.494073 TCTCCTTTCTTCTCCTCGCTTC 59.506 50.000 0.00 0.00 0.00 3.86
3124 6380 2.495669 CTCCTTTCTTCTCCTCGCTTCT 59.504 50.000 0.00 0.00 0.00 2.85
3125 6381 2.232452 TCCTTTCTTCTCCTCGCTTCTG 59.768 50.000 0.00 0.00 0.00 3.02
3126 6382 2.615869 CTTTCTTCTCCTCGCTTCTGG 58.384 52.381 0.00 0.00 0.00 3.86
3127 6383 1.633774 TTCTTCTCCTCGCTTCTGGT 58.366 50.000 0.00 0.00 0.00 4.00
3128 6384 0.891373 TCTTCTCCTCGCTTCTGGTG 59.109 55.000 0.00 0.00 0.00 4.17
3129 6385 0.739112 CTTCTCCTCGCTTCTGGTGC 60.739 60.000 0.00 0.00 0.00 5.01
3130 6386 2.125350 CTCCTCGCTTCTGGTGCC 60.125 66.667 0.00 0.00 0.00 5.01
3131 6387 3.672295 CTCCTCGCTTCTGGTGCCC 62.672 68.421 0.00 0.00 0.00 5.36
3132 6388 4.785453 CCTCGCTTCTGGTGCCCC 62.785 72.222 0.00 0.00 0.00 5.80
3153 6409 4.090057 GCCGCTGCGACCTTGTTC 62.090 66.667 25.45 0.00 0.00 3.18
3154 6410 3.423154 CCGCTGCGACCTTGTTCC 61.423 66.667 25.45 0.00 0.00 3.62
3155 6411 2.357517 CGCTGCGACCTTGTTCCT 60.358 61.111 18.66 0.00 0.00 3.36
3156 6412 2.383527 CGCTGCGACCTTGTTCCTC 61.384 63.158 18.66 0.00 0.00 3.71
3157 6413 2.383527 GCTGCGACCTTGTTCCTCG 61.384 63.158 0.00 0.00 0.00 4.63
3159 6415 3.119096 GCGACCTTGTTCCTCGCC 61.119 66.667 0.00 0.00 45.60 5.54
3160 6416 2.657237 CGACCTTGTTCCTCGCCT 59.343 61.111 0.00 0.00 0.00 5.52
3161 6417 1.446272 CGACCTTGTTCCTCGCCTC 60.446 63.158 0.00 0.00 0.00 4.70
3162 6418 1.079057 GACCTTGTTCCTCGCCTCC 60.079 63.158 0.00 0.00 0.00 4.30
3163 6419 1.827399 GACCTTGTTCCTCGCCTCCA 61.827 60.000 0.00 0.00 0.00 3.86
3164 6420 1.078848 CCTTGTTCCTCGCCTCCAG 60.079 63.158 0.00 0.00 0.00 3.86
3165 6421 1.743252 CTTGTTCCTCGCCTCCAGC 60.743 63.158 0.00 0.00 38.52 4.85
3193 6449 4.090057 GCCGCTGCGACCTTGTTC 62.090 66.667 25.45 0.00 0.00 3.18
3194 6450 3.423154 CCGCTGCGACCTTGTTCC 61.423 66.667 25.45 0.00 0.00 3.62
3195 6451 2.357517 CGCTGCGACCTTGTTCCT 60.358 61.111 18.66 0.00 0.00 3.36
3196 6452 2.383527 CGCTGCGACCTTGTTCCTC 61.384 63.158 18.66 0.00 0.00 3.71
3197 6453 2.383527 GCTGCGACCTTGTTCCTCG 61.384 63.158 0.00 0.00 0.00 4.63
3199 6455 3.119096 GCGACCTTGTTCCTCGCC 61.119 66.667 0.00 0.00 45.60 5.54
3200 6456 2.657237 CGACCTTGTTCCTCGCCT 59.343 61.111 0.00 0.00 0.00 5.52
3201 6457 1.446272 CGACCTTGTTCCTCGCCTC 60.446 63.158 0.00 0.00 0.00 4.70
3202 6458 1.079057 GACCTTGTTCCTCGCCTCC 60.079 63.158 0.00 0.00 0.00 4.30
3203 6459 1.827399 GACCTTGTTCCTCGCCTCCA 61.827 60.000 0.00 0.00 0.00 3.86
3204 6460 1.078848 CCTTGTTCCTCGCCTCCAG 60.079 63.158 0.00 0.00 0.00 3.86
3205 6461 1.743252 CTTGTTCCTCGCCTCCAGC 60.743 63.158 0.00 0.00 38.52 4.85
3228 6484 4.785453 CCCGCCTCCAGTGCCTTC 62.785 72.222 0.00 0.00 0.00 3.46
3229 6485 3.710722 CCGCCTCCAGTGCCTTCT 61.711 66.667 0.00 0.00 0.00 2.85
3230 6486 2.348998 CGCCTCCAGTGCCTTCTT 59.651 61.111 0.00 0.00 0.00 2.52
3231 6487 1.743252 CGCCTCCAGTGCCTTCTTC 60.743 63.158 0.00 0.00 0.00 2.87
3232 6488 1.377856 GCCTCCAGTGCCTTCTTCC 60.378 63.158 0.00 0.00 0.00 3.46
3233 6489 1.301293 CCTCCAGTGCCTTCTTCCC 59.699 63.158 0.00 0.00 0.00 3.97
3234 6490 1.301293 CTCCAGTGCCTTCTTCCCC 59.699 63.158 0.00 0.00 0.00 4.81
3235 6491 2.045926 CCAGTGCCTTCTTCCCCG 60.046 66.667 0.00 0.00 0.00 5.73
3236 6492 2.747855 CAGTGCCTTCTTCCCCGC 60.748 66.667 0.00 0.00 0.00 6.13
3237 6493 4.035102 AGTGCCTTCTTCCCCGCC 62.035 66.667 0.00 0.00 0.00 6.13
3283 6539 4.849329 GCTCCGGCTACCACGACG 62.849 72.222 0.00 0.00 35.22 5.12
3284 6540 3.437795 CTCCGGCTACCACGACGT 61.438 66.667 0.00 0.00 0.00 4.34
3285 6541 3.392595 CTCCGGCTACCACGACGTC 62.393 68.421 5.18 5.18 0.00 4.34
3286 6542 4.487412 CCGGCTACCACGACGTCC 62.487 72.222 10.58 0.00 0.00 4.79
3287 6543 4.824166 CGGCTACCACGACGTCCG 62.824 72.222 10.58 10.17 45.44 4.79
3289 6545 4.409218 GCTACCACGACGTCCGCA 62.409 66.667 10.58 0.00 43.32 5.69
3290 6546 2.503375 CTACCACGACGTCCGCAC 60.503 66.667 10.58 0.00 43.32 5.34
3291 6547 3.958822 CTACCACGACGTCCGCACC 62.959 68.421 10.58 0.00 43.32 5.01
3308 6564 4.108299 CCACCCCGCCAGCATGTA 62.108 66.667 0.00 0.00 0.00 2.29
3309 6565 2.192979 CACCCCGCCAGCATGTAT 59.807 61.111 0.00 0.00 0.00 2.29
3310 6566 1.453745 CACCCCGCCAGCATGTATT 60.454 57.895 0.00 0.00 0.00 1.89
3311 6567 0.179032 CACCCCGCCAGCATGTATTA 60.179 55.000 0.00 0.00 0.00 0.98
3312 6568 0.179029 ACCCCGCCAGCATGTATTAC 60.179 55.000 0.00 0.00 0.00 1.89
3313 6569 1.227999 CCCCGCCAGCATGTATTACG 61.228 60.000 0.00 0.00 0.00 3.18
3314 6570 1.569493 CCGCCAGCATGTATTACGC 59.431 57.895 0.00 0.00 0.00 4.42
3315 6571 1.201578 CGCCAGCATGTATTACGCG 59.798 57.895 3.53 3.53 33.52 6.01
3316 6572 1.569493 GCCAGCATGTATTACGCGG 59.431 57.895 12.47 0.00 0.00 6.46
3317 6573 0.878523 GCCAGCATGTATTACGCGGA 60.879 55.000 12.47 0.00 0.00 5.54
3318 6574 1.139989 CCAGCATGTATTACGCGGAG 58.860 55.000 12.47 0.00 0.00 4.63
3319 6575 1.269569 CCAGCATGTATTACGCGGAGA 60.270 52.381 12.47 0.00 0.00 3.71
3320 6576 2.610479 CCAGCATGTATTACGCGGAGAT 60.610 50.000 12.47 3.51 0.00 2.75
3321 6577 2.663602 CAGCATGTATTACGCGGAGATC 59.336 50.000 12.47 0.00 0.00 2.75
3322 6578 1.993370 GCATGTATTACGCGGAGATCC 59.007 52.381 12.47 0.00 0.00 3.36
3338 6594 4.314096 CCGCTCCGGTAATACACG 57.686 61.111 0.00 0.00 42.73 4.49
3339 6595 1.434696 CCGCTCCGGTAATACACGT 59.565 57.895 0.00 0.00 42.73 4.49
3340 6596 0.593263 CCGCTCCGGTAATACACGTC 60.593 60.000 0.00 0.00 42.73 4.34
3341 6597 0.379669 CGCTCCGGTAATACACGTCT 59.620 55.000 0.00 0.00 0.00 4.18
3342 6598 1.596464 CGCTCCGGTAATACACGTCTC 60.596 57.143 0.00 0.00 0.00 3.36
3343 6599 1.596464 GCTCCGGTAATACACGTCTCG 60.596 57.143 0.00 0.00 0.00 4.04
3344 6600 1.003116 CTCCGGTAATACACGTCTCGG 60.003 57.143 0.00 0.00 37.61 4.63
3345 6601 0.734889 CCGGTAATACACGTCTCGGT 59.265 55.000 0.00 0.00 0.00 4.69
3346 6602 1.268234 CCGGTAATACACGTCTCGGTC 60.268 57.143 0.00 0.00 0.00 4.79
3347 6603 1.667724 CGGTAATACACGTCTCGGTCT 59.332 52.381 0.00 0.00 0.00 3.85
3348 6604 2.286067 CGGTAATACACGTCTCGGTCTC 60.286 54.545 0.00 0.00 0.00 3.36
3349 6605 2.286067 GGTAATACACGTCTCGGTCTCG 60.286 54.545 0.00 0.00 37.82 4.04
3350 6606 1.730501 AATACACGTCTCGGTCTCGA 58.269 50.000 0.00 0.00 43.86 4.04
3366 6622 2.202453 GAGACGTTCGAGACCGCC 60.202 66.667 0.00 0.00 35.37 6.13
3367 6623 3.680338 GAGACGTTCGAGACCGCCC 62.680 68.421 0.00 0.00 35.37 6.13
3368 6624 4.047059 GACGTTCGAGACCGCCCA 62.047 66.667 0.00 0.00 35.37 5.36
3369 6625 4.353437 ACGTTCGAGACCGCCCAC 62.353 66.667 0.00 0.00 35.37 4.61
3370 6626 4.351938 CGTTCGAGACCGCCCACA 62.352 66.667 0.00 0.00 35.37 4.17
3371 6627 2.029964 GTTCGAGACCGCCCACAA 59.970 61.111 0.00 0.00 35.37 3.33
3372 6628 2.027625 GTTCGAGACCGCCCACAAG 61.028 63.158 0.00 0.00 35.37 3.16
3373 6629 3.234630 TTCGAGACCGCCCACAAGG 62.235 63.158 0.00 0.00 39.47 3.61
3412 6668 4.680237 CGGTGTGGCGCCTCTTGA 62.680 66.667 29.70 2.88 0.00 3.02
3413 6669 2.743928 GGTGTGGCGCCTCTTGAG 60.744 66.667 29.70 0.00 0.00 3.02
3414 6670 2.743928 GTGTGGCGCCTCTTGAGG 60.744 66.667 29.70 12.07 0.00 3.86
3422 6678 4.285851 CCTCTTGAGGCCACGTTC 57.714 61.111 5.01 0.00 0.00 3.95
3423 6679 1.738099 CCTCTTGAGGCCACGTTCG 60.738 63.158 5.01 0.00 0.00 3.95
3424 6680 2.357034 TCTTGAGGCCACGTTCGC 60.357 61.111 5.01 0.00 0.00 4.70
3425 6681 2.664851 CTTGAGGCCACGTTCGCA 60.665 61.111 5.01 0.00 0.00 5.10
3426 6682 2.664851 TTGAGGCCACGTTCGCAG 60.665 61.111 5.01 0.00 0.00 5.18
3427 6683 3.158537 TTGAGGCCACGTTCGCAGA 62.159 57.895 5.01 0.00 0.00 4.26
3428 6684 2.125512 GAGGCCACGTTCGCAGAT 60.126 61.111 5.01 0.00 35.04 2.90
3429 6685 2.434884 AGGCCACGTTCGCAGATG 60.435 61.111 5.01 0.00 35.04 2.90
3430 6686 2.434185 GGCCACGTTCGCAGATGA 60.434 61.111 0.00 0.00 35.04 2.92
3431 6687 2.032634 GGCCACGTTCGCAGATGAA 61.033 57.895 0.00 0.00 35.04 2.57
3432 6688 1.369091 GGCCACGTTCGCAGATGAAT 61.369 55.000 0.00 0.00 35.04 2.57
3433 6689 0.447801 GCCACGTTCGCAGATGAATT 59.552 50.000 0.00 0.00 35.04 2.17
3434 6690 1.135689 GCCACGTTCGCAGATGAATTT 60.136 47.619 0.00 0.00 35.04 1.82
3435 6691 2.774007 CCACGTTCGCAGATGAATTTC 58.226 47.619 0.00 0.00 35.04 2.17
3436 6692 2.416547 CCACGTTCGCAGATGAATTTCT 59.583 45.455 0.00 0.00 35.04 2.52
3437 6693 3.484229 CCACGTTCGCAGATGAATTTCTC 60.484 47.826 0.00 0.00 35.04 2.87
3438 6694 2.345641 ACGTTCGCAGATGAATTTCTCG 59.654 45.455 0.00 0.00 35.04 4.04
3439 6695 2.285256 CGTTCGCAGATGAATTTCTCGG 60.285 50.000 0.00 0.00 35.04 4.63
3440 6696 2.930040 GTTCGCAGATGAATTTCTCGGA 59.070 45.455 0.00 0.00 35.04 4.55
3441 6697 2.540515 TCGCAGATGAATTTCTCGGAC 58.459 47.619 0.00 0.00 0.00 4.79
3442 6698 1.256376 CGCAGATGAATTTCTCGGACG 59.744 52.381 0.00 0.00 0.00 4.79
3443 6699 1.004504 GCAGATGAATTTCTCGGACGC 60.005 52.381 0.00 0.00 0.00 5.19
3444 6700 1.256376 CAGATGAATTTCTCGGACGCG 59.744 52.381 3.53 3.53 0.00 6.01
3445 6701 0.042967 GATGAATTTCTCGGACGCGC 60.043 55.000 5.73 0.00 0.00 6.86
3446 6702 0.739462 ATGAATTTCTCGGACGCGCA 60.739 50.000 5.73 0.00 0.00 6.09
3447 6703 1.345176 GAATTTCTCGGACGCGCAG 59.655 57.895 5.73 2.42 0.00 5.18
3448 6704 1.076533 GAATTTCTCGGACGCGCAGA 61.077 55.000 5.73 4.50 0.00 4.26
3449 6705 1.352156 AATTTCTCGGACGCGCAGAC 61.352 55.000 5.73 0.26 0.00 3.51
3450 6706 4.753877 TTCTCGGACGCGCAGACG 62.754 66.667 5.73 8.37 44.07 4.18
3459 6715 3.782244 GCGCAGACGAGCCAACAG 61.782 66.667 0.30 0.00 43.93 3.16
3460 6716 3.114616 CGCAGACGAGCCAACAGG 61.115 66.667 0.00 0.00 43.93 4.00
3470 6726 4.335647 CCAACAGGCGCAGGACCT 62.336 66.667 10.83 0.00 38.35 3.85
3471 6727 2.743928 CAACAGGCGCAGGACCTC 60.744 66.667 10.83 0.00 34.42 3.85
3472 6728 4.379243 AACAGGCGCAGGACCTCG 62.379 66.667 10.83 8.46 34.42 4.63
3480 6736 4.135153 CAGGACCTCGTGCCTCCG 62.135 72.222 0.00 0.00 30.41 4.63
3491 6747 4.587189 GCCTCCGCCGCGACTAAT 62.587 66.667 15.93 0.00 0.00 1.73
3492 6748 2.354773 CCTCCGCCGCGACTAATC 60.355 66.667 15.93 0.00 0.00 1.75
3493 6749 2.411701 CTCCGCCGCGACTAATCA 59.588 61.111 15.93 0.00 0.00 2.57
3494 6750 1.944676 CTCCGCCGCGACTAATCAC 60.945 63.158 15.93 0.00 0.00 3.06
3495 6751 2.960129 CCGCCGCGACTAATCACC 60.960 66.667 15.93 0.00 0.00 4.02
3496 6752 3.320078 CGCCGCGACTAATCACCG 61.320 66.667 8.23 0.00 0.00 4.94
3497 6753 2.103538 GCCGCGACTAATCACCGA 59.896 61.111 8.23 0.00 0.00 4.69
3498 6754 2.228914 GCCGCGACTAATCACCGAC 61.229 63.158 8.23 0.00 0.00 4.79
3499 6755 1.937846 CCGCGACTAATCACCGACG 60.938 63.158 8.23 0.00 0.00 5.12
3500 6756 1.061411 CGCGACTAATCACCGACGA 59.939 57.895 0.00 0.00 0.00 4.20
3501 6757 0.924363 CGCGACTAATCACCGACGAG 60.924 60.000 0.00 0.00 0.00 4.18
3503 6759 1.012086 CGACTAATCACCGACGAGGA 58.988 55.000 8.56 0.00 45.00 3.71
3504 6760 1.267932 CGACTAATCACCGACGAGGAC 60.268 57.143 8.56 0.00 45.00 3.85
3505 6761 1.065251 GACTAATCACCGACGAGGACC 59.935 57.143 8.56 0.00 45.00 4.46
3506 6762 0.029035 CTAATCACCGACGAGGACCG 59.971 60.000 8.56 0.00 45.00 4.79
3507 6763 1.996786 TAATCACCGACGAGGACCGC 61.997 60.000 8.56 0.00 45.00 5.68
3509 6765 4.778415 CACCGACGAGGACCGCTG 62.778 72.222 8.56 0.00 45.00 5.18
3512 6768 4.498520 CGACGAGGACCGCTGCAT 62.499 66.667 0.00 0.00 43.32 3.96
3513 6769 2.583593 GACGAGGACCGCTGCATC 60.584 66.667 0.00 0.00 43.32 3.91
3514 6770 3.069980 GACGAGGACCGCTGCATCT 62.070 63.158 0.00 0.00 43.32 2.90
3515 6771 1.725557 GACGAGGACCGCTGCATCTA 61.726 60.000 0.00 0.00 43.32 1.98
3516 6772 1.007964 CGAGGACCGCTGCATCTAG 60.008 63.158 0.00 0.00 0.00 2.43
3517 6773 1.300542 GAGGACCGCTGCATCTAGC 60.301 63.158 0.00 0.00 45.96 3.42
3526 6782 2.049618 GCATCTAGCGGAGGCGAG 60.050 66.667 3.95 0.00 46.35 5.03
3529 6785 2.590645 TCTAGCGGAGGCGAGAGT 59.409 61.111 0.00 0.00 44.52 3.24
3530 6786 1.820056 TCTAGCGGAGGCGAGAGTG 60.820 63.158 0.00 0.00 44.52 3.51
3531 6787 3.477224 CTAGCGGAGGCGAGAGTGC 62.477 68.421 0.00 0.00 43.72 4.40
3540 6796 4.200283 CGAGAGTGCCGCCTCCTC 62.200 72.222 5.53 0.74 31.53 3.71
3541 6797 3.071206 GAGAGTGCCGCCTCCTCA 61.071 66.667 5.53 0.00 31.53 3.86
3542 6798 2.364842 AGAGTGCCGCCTCCTCAT 60.365 61.111 5.53 0.00 31.53 2.90
3543 6799 2.107953 GAGTGCCGCCTCCTCATC 59.892 66.667 0.00 0.00 0.00 2.92
3544 6800 3.781770 GAGTGCCGCCTCCTCATCG 62.782 68.421 0.00 0.00 0.00 3.84
3549 6805 4.637489 CGCCTCCTCATCGCCGAG 62.637 72.222 0.00 0.00 0.00 4.63
3596 6852 4.129737 CGAGCGCTTCCCGGAGAA 62.130 66.667 13.26 3.84 37.44 2.87
3597 6853 2.501610 GAGCGCTTCCCGGAGAAT 59.498 61.111 13.26 0.00 37.44 2.40
3598 6854 1.884926 GAGCGCTTCCCGGAGAATG 60.885 63.158 13.26 2.08 37.44 2.67
3599 6855 2.125106 GCGCTTCCCGGAGAATGT 60.125 61.111 0.73 0.00 37.44 2.71
3600 6856 1.745489 GCGCTTCCCGGAGAATGTT 60.745 57.895 0.73 0.00 37.44 2.71
3601 6857 1.982073 GCGCTTCCCGGAGAATGTTG 61.982 60.000 0.73 0.00 37.44 3.33
3602 6858 1.803289 GCTTCCCGGAGAATGTTGC 59.197 57.895 0.73 0.94 32.82 4.17
3603 6859 1.657751 GCTTCCCGGAGAATGTTGCC 61.658 60.000 0.73 0.00 32.82 4.52
3604 6860 1.369091 CTTCCCGGAGAATGTTGCCG 61.369 60.000 0.73 0.00 44.42 5.69
3605 6861 3.508840 CCCGGAGAATGTTGCCGC 61.509 66.667 0.73 0.00 43.52 6.53
3606 6862 2.745884 CCGGAGAATGTTGCCGCA 60.746 61.111 0.00 0.00 43.52 5.69
3607 6863 2.753966 CCGGAGAATGTTGCCGCAG 61.754 63.158 0.00 0.00 43.52 5.18
3608 6864 1.741401 CGGAGAATGTTGCCGCAGA 60.741 57.895 0.00 0.00 38.46 4.26
3609 6865 1.699656 CGGAGAATGTTGCCGCAGAG 61.700 60.000 0.00 0.00 38.46 3.35
3610 6866 1.372087 GGAGAATGTTGCCGCAGAGG 61.372 60.000 0.00 0.00 44.97 3.69
3611 6867 0.391661 GAGAATGTTGCCGCAGAGGA 60.392 55.000 0.00 0.00 45.00 3.71
3612 6868 0.392193 AGAATGTTGCCGCAGAGGAG 60.392 55.000 0.00 0.00 45.00 3.69
3613 6869 1.372087 GAATGTTGCCGCAGAGGAGG 61.372 60.000 0.00 0.00 45.00 4.30
3614 6870 2.826777 AATGTTGCCGCAGAGGAGGG 62.827 60.000 0.00 0.00 45.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 8.813282 GGTTAGTTTTGTTTCCATGTGTTTTAG 58.187 33.333 0.00 0.00 0.00 1.85
23 24 8.311836 TGGTTAGTTTTGTTTCCATGTGTTTTA 58.688 29.630 0.00 0.00 0.00 1.52
27 28 5.923733 TGGTTAGTTTTGTTTCCATGTGT 57.076 34.783 0.00 0.00 0.00 3.72
28 29 8.879342 TTATTGGTTAGTTTTGTTTCCATGTG 57.121 30.769 0.00 0.00 0.00 3.21
32 33 8.759782 TCCTTTTATTGGTTAGTTTTGTTTCCA 58.240 29.630 0.00 0.00 0.00 3.53
33 34 9.602568 TTCCTTTTATTGGTTAGTTTTGTTTCC 57.397 29.630 0.00 0.00 0.00 3.13
371 463 3.670625 TCTTATTAGGCTGTTTGCGTGT 58.329 40.909 0.00 0.00 44.05 4.49
418 510 6.488683 TGTATTTTGGGTCAGTCGATTTCTTT 59.511 34.615 0.00 0.00 0.00 2.52
509 602 3.632643 TGATTGCTGCTCCAAGATGTA 57.367 42.857 0.00 0.00 0.00 2.29
510 603 2.490903 GTTGATTGCTGCTCCAAGATGT 59.509 45.455 0.00 0.00 0.00 3.06
577 672 8.978472 ACTATTCTGTTCCACTTTAGCTACATA 58.022 33.333 0.00 0.00 0.00 2.29
611 706 1.387084 GTTGATGCGTCGTCTTCTCAC 59.613 52.381 0.58 0.00 0.00 3.51
731 827 1.733041 CACTCACGTGTACGCAGGG 60.733 63.158 16.51 1.77 44.43 4.45
790 889 2.967076 CCCATGAATCGACGGCGG 60.967 66.667 12.58 0.00 38.28 6.13
877 996 2.657237 GACGGACACACTCCTGGG 59.343 66.667 0.00 0.00 36.80 4.45
901 1020 3.315191 GTCAGCATGCCCGTGTATTTATT 59.685 43.478 15.66 0.00 34.76 1.40
991 1123 1.742880 CCGTGTCCATGGCTCACTG 60.743 63.158 25.77 19.83 0.00 3.66
1602 4261 1.446272 CTCCTTGAACTCGCGTCCC 60.446 63.158 5.77 0.00 0.00 4.46
1605 4264 0.179161 CGATCTCCTTGAACTCGCGT 60.179 55.000 5.77 0.00 0.00 6.01
1749 4408 2.093288 GTGCTCCTCCATGATCTTGACA 60.093 50.000 10.07 0.00 0.00 3.58
1891 4563 2.788786 GACGGCGGCATTAATTCAATTG 59.211 45.455 8.47 0.00 0.00 2.32
1893 4565 1.336755 GGACGGCGGCATTAATTCAAT 59.663 47.619 17.61 0.00 0.00 2.57
1894 4566 0.736053 GGACGGCGGCATTAATTCAA 59.264 50.000 17.61 0.00 0.00 2.69
1910 4582 5.633601 TCAAATCGCGATCACTAATATGGAC 59.366 40.000 23.92 0.00 0.00 4.02
1950 4936 7.175347 ACACATGTGAGTGAGTGACTAATAT 57.825 36.000 31.94 0.06 42.05 1.28
1951 4937 6.590234 ACACATGTGAGTGAGTGACTAATA 57.410 37.500 31.94 0.00 42.05 0.98
2062 5302 2.912624 GCACCTTCTGCTGCACCAC 61.913 63.158 0.00 0.00 43.33 4.16
2139 5379 3.587840 TGCAGGTAGGGCAGGTTT 58.412 55.556 0.00 0.00 36.11 3.27
2235 5475 1.447140 GATGTTGTAGCCGGCGACA 60.447 57.895 34.68 34.68 35.05 4.35
2509 5749 0.395862 ATCATGTCGAGGTCCTCCGT 60.396 55.000 13.54 0.00 39.05 4.69
2661 5901 1.889530 CTCTGAACCACCGGGAGTCC 61.890 65.000 6.32 0.00 38.05 3.85
2662 5902 1.592223 CTCTGAACCACCGGGAGTC 59.408 63.158 6.32 0.00 38.05 3.36
2663 5903 2.584391 GCTCTGAACCACCGGGAGT 61.584 63.158 6.32 0.00 38.05 3.85
2664 5904 2.232298 GAGCTCTGAACCACCGGGAG 62.232 65.000 6.32 1.25 38.05 4.30
2665 5905 2.203788 AGCTCTGAACCACCGGGA 60.204 61.111 6.32 0.00 38.05 5.14
2666 5906 2.266055 GAGCTCTGAACCACCGGG 59.734 66.667 6.32 0.00 41.29 5.73
2667 5907 1.079543 CTGAGCTCTGAACCACCGG 60.080 63.158 16.19 0.00 0.00 5.28
2668 5908 1.079543 CCTGAGCTCTGAACCACCG 60.080 63.158 21.10 0.00 0.00 4.94
2685 5925 5.296813 ACGTCAATACTTGATTTGAAGCC 57.703 39.130 0.00 0.00 42.47 4.35
2761 6010 7.817962 GCTGTACCACGAGTATATTTATGGATT 59.182 37.037 5.92 0.00 32.28 3.01
2768 6017 6.156748 TCATGCTGTACCACGAGTATATTT 57.843 37.500 0.00 0.00 32.28 1.40
2805 6054 7.226720 ACGATTGAGAAACACAAGTTCTATTGT 59.773 33.333 0.00 0.00 44.12 2.71
2807 6056 7.441157 TGACGATTGAGAAACACAAGTTCTATT 59.559 33.333 0.00 0.00 36.84 1.73
2819 6068 6.721571 TTGTAATCCTGACGATTGAGAAAC 57.278 37.500 0.00 0.00 41.47 2.78
2822 6071 6.042777 GTGATTGTAATCCTGACGATTGAGA 58.957 40.000 2.41 0.00 41.47 3.27
2830 6079 4.386867 TCTCCGTGATTGTAATCCTGAC 57.613 45.455 2.41 0.00 34.50 3.51
2831 6080 5.596772 TGTATCTCCGTGATTGTAATCCTGA 59.403 40.000 2.41 0.00 36.65 3.86
2846 6095 2.539142 CGAGGACGAACTTGTATCTCCG 60.539 54.545 0.00 0.00 42.66 4.63
2852 6101 0.883833 GTCCCGAGGACGAACTTGTA 59.116 55.000 7.23 0.00 43.14 2.41
2867 6121 0.255890 TTTGGCTATGCTCTGGTCCC 59.744 55.000 0.00 0.00 0.00 4.46
2896 6152 2.356695 TCTTACGCTAGTCGCAGCAATA 59.643 45.455 6.50 0.00 41.88 1.90
2902 6158 0.738975 ATGCTCTTACGCTAGTCGCA 59.261 50.000 6.50 0.00 43.23 5.10
2903 6159 1.002251 AGATGCTCTTACGCTAGTCGC 60.002 52.381 6.50 0.00 43.23 5.19
2904 6160 2.350007 GGAGATGCTCTTACGCTAGTCG 60.350 54.545 5.24 5.24 45.38 4.18
2905 6161 2.619177 TGGAGATGCTCTTACGCTAGTC 59.381 50.000 0.00 0.00 0.00 2.59
2906 6162 2.656002 TGGAGATGCTCTTACGCTAGT 58.344 47.619 0.00 0.00 0.00 2.57
2907 6163 3.181486 TGTTGGAGATGCTCTTACGCTAG 60.181 47.826 0.00 0.00 0.00 3.42
2908 6164 2.758423 TGTTGGAGATGCTCTTACGCTA 59.242 45.455 0.00 0.00 0.00 4.26
2909 6165 1.550524 TGTTGGAGATGCTCTTACGCT 59.449 47.619 0.00 0.00 0.00 5.07
2910 6166 1.929836 CTGTTGGAGATGCTCTTACGC 59.070 52.381 0.00 0.00 0.00 4.42
2911 6167 2.544685 CCTGTTGGAGATGCTCTTACG 58.455 52.381 0.00 0.00 34.57 3.18
2912 6168 2.284190 GCCTGTTGGAGATGCTCTTAC 58.716 52.381 0.00 0.00 34.57 2.34
2913 6169 1.908619 TGCCTGTTGGAGATGCTCTTA 59.091 47.619 0.00 0.00 34.57 2.10
2914 6170 0.694771 TGCCTGTTGGAGATGCTCTT 59.305 50.000 0.00 0.00 34.57 2.85
2915 6171 0.252479 CTGCCTGTTGGAGATGCTCT 59.748 55.000 0.00 0.00 34.57 4.09
2916 6172 0.747283 CCTGCCTGTTGGAGATGCTC 60.747 60.000 0.00 0.00 34.57 4.26
2917 6173 1.302285 CCTGCCTGTTGGAGATGCT 59.698 57.895 0.00 0.00 34.57 3.79
2918 6174 2.413142 GCCTGCCTGTTGGAGATGC 61.413 63.158 0.00 0.00 34.57 3.91
2919 6175 0.543277 TAGCCTGCCTGTTGGAGATG 59.457 55.000 0.00 0.00 34.57 2.90
2920 6176 0.835941 CTAGCCTGCCTGTTGGAGAT 59.164 55.000 0.00 0.00 34.57 2.75
2921 6177 0.252239 TCTAGCCTGCCTGTTGGAGA 60.252 55.000 0.00 0.00 34.57 3.71
2922 6178 0.835941 ATCTAGCCTGCCTGTTGGAG 59.164 55.000 0.00 0.00 34.57 3.86
2923 6179 1.762957 GTATCTAGCCTGCCTGTTGGA 59.237 52.381 0.00 0.00 34.57 3.53
2924 6180 1.486310 TGTATCTAGCCTGCCTGTTGG 59.514 52.381 0.00 0.00 0.00 3.77
2925 6181 2.939103 GTTGTATCTAGCCTGCCTGTTG 59.061 50.000 0.00 0.00 0.00 3.33
2926 6182 2.418746 CGTTGTATCTAGCCTGCCTGTT 60.419 50.000 0.00 0.00 0.00 3.16
2927 6183 1.137086 CGTTGTATCTAGCCTGCCTGT 59.863 52.381 0.00 0.00 0.00 4.00
2928 6184 1.858091 CGTTGTATCTAGCCTGCCTG 58.142 55.000 0.00 0.00 0.00 4.85
2929 6185 0.105039 GCGTTGTATCTAGCCTGCCT 59.895 55.000 0.00 0.00 0.00 4.75
2930 6186 1.215655 CGCGTTGTATCTAGCCTGCC 61.216 60.000 0.00 0.00 0.00 4.85
2931 6187 1.822250 GCGCGTTGTATCTAGCCTGC 61.822 60.000 8.43 0.00 0.00 4.85
2932 6188 1.540607 CGCGCGTTGTATCTAGCCTG 61.541 60.000 24.19 0.00 0.00 4.85
2933 6189 1.299165 CGCGCGTTGTATCTAGCCT 60.299 57.895 24.19 0.00 0.00 4.58
2934 6190 2.928732 GCGCGCGTTGTATCTAGCC 61.929 63.158 32.35 5.70 0.00 3.93
2935 6191 2.539985 GCGCGCGTTGTATCTAGC 59.460 61.111 32.35 6.21 0.00 3.42
2936 6192 1.589154 CTCGCGCGCGTTGTATCTAG 61.589 60.000 46.54 31.99 40.74 2.43
2937 6193 1.653232 CTCGCGCGCGTTGTATCTA 60.653 57.895 46.54 27.65 40.74 1.98
2938 6194 2.860690 TTCTCGCGCGCGTTGTATCT 62.861 55.000 46.54 0.00 40.74 1.98
2939 6195 2.005178 TTTCTCGCGCGCGTTGTATC 62.005 55.000 46.54 12.46 40.74 2.24
2940 6196 1.619526 TTTTCTCGCGCGCGTTGTAT 61.620 50.000 46.54 0.00 40.74 2.29
2941 6197 1.819226 TTTTTCTCGCGCGCGTTGTA 61.819 50.000 46.54 31.52 40.74 2.41
2942 6198 3.158011 TTTTTCTCGCGCGCGTTGT 62.158 52.632 46.54 0.00 40.74 3.32
2943 6199 2.424479 TTTTTCTCGCGCGCGTTG 60.424 55.556 46.54 37.89 40.74 4.10
2958 6214 0.501015 GCGCGCGCTAAAAACTTTTT 59.499 45.000 44.38 4.90 38.26 1.94
2959 6215 1.593414 CGCGCGCGCTAAAAACTTTT 61.593 50.000 45.97 0.00 39.32 2.27
2960 6216 2.072654 CGCGCGCGCTAAAAACTTT 61.073 52.632 45.97 0.00 39.32 2.66
2961 6217 2.498887 CGCGCGCGCTAAAAACTT 60.499 55.556 45.97 0.00 39.32 2.66
2962 6218 4.439472 CCGCGCGCGCTAAAAACT 62.439 61.111 45.97 0.00 39.32 2.66
2982 6238 3.737172 CTGAAGGGCGCCAAACCG 61.737 66.667 30.85 9.46 0.00 4.44
2983 6239 4.056125 GCTGAAGGGCGCCAAACC 62.056 66.667 30.85 11.04 0.00 3.27
2984 6240 3.273080 CTGCTGAAGGGCGCCAAAC 62.273 63.158 30.85 18.26 34.52 2.93
2985 6241 2.985282 CTGCTGAAGGGCGCCAAA 60.985 61.111 30.85 9.20 34.52 3.28
2996 6252 4.155950 TTTTTCTGCGCCTGCTGA 57.844 50.000 4.18 0.00 45.87 4.26
3010 6266 0.798771 TTTTCGCGCGTGCAGTTTTT 60.799 45.000 30.98 0.00 42.97 1.94
3011 6267 0.798771 TTTTTCGCGCGTGCAGTTTT 60.799 45.000 30.98 0.00 42.97 2.43
3012 6268 1.199852 CTTTTTCGCGCGTGCAGTTT 61.200 50.000 30.98 0.00 42.97 2.66
3013 6269 1.654137 CTTTTTCGCGCGTGCAGTT 60.654 52.632 30.98 0.00 42.97 3.16
3014 6270 2.052237 CTTTTTCGCGCGTGCAGT 60.052 55.556 30.98 0.00 42.97 4.40
3015 6271 3.452668 GCTTTTTCGCGCGTGCAG 61.453 61.111 30.98 20.88 42.97 4.41
3023 6279 2.353030 ACGTTGCCGCTTTTTCGC 60.353 55.556 0.00 0.00 37.70 4.70
3024 6280 2.635305 GCACGTTGCCGCTTTTTCG 61.635 57.895 0.00 0.00 37.42 3.46
3025 6281 2.635305 CGCACGTTGCCGCTTTTTC 61.635 57.895 4.73 0.00 41.12 2.29
3026 6282 2.653766 CGCACGTTGCCGCTTTTT 60.654 55.556 4.73 0.00 41.12 1.94
3027 6283 3.883180 ACGCACGTTGCCGCTTTT 61.883 55.556 4.73 0.00 41.12 2.27
3028 6284 4.605967 CACGCACGTTGCCGCTTT 62.606 61.111 0.00 0.00 41.12 3.51
3047 6303 0.248743 TTTATAGAGCGCACCCGACG 60.249 55.000 11.47 0.00 36.29 5.12
3048 6304 1.591619 GTTTTATAGAGCGCACCCGAC 59.408 52.381 11.47 0.00 36.29 4.79
3049 6305 1.472026 GGTTTTATAGAGCGCACCCGA 60.472 52.381 11.47 0.00 36.29 5.14
3050 6306 0.935196 GGTTTTATAGAGCGCACCCG 59.065 55.000 11.47 0.00 37.57 5.28
3051 6307 1.134189 AGGGTTTTATAGAGCGCACCC 60.134 52.381 18.03 18.03 43.85 4.61
3052 6308 2.210961 GAGGGTTTTATAGAGCGCACC 58.789 52.381 11.47 5.29 0.00 5.01
3053 6309 1.859080 CGAGGGTTTTATAGAGCGCAC 59.141 52.381 11.47 2.25 0.00 5.34
3054 6310 1.479323 ACGAGGGTTTTATAGAGCGCA 59.521 47.619 11.47 0.00 0.00 6.09
3055 6311 1.859080 CACGAGGGTTTTATAGAGCGC 59.141 52.381 0.00 0.00 0.00 5.92
3056 6312 2.858344 CACACGAGGGTTTTATAGAGCG 59.142 50.000 0.00 0.00 0.00 5.03
3057 6313 2.608090 GCACACGAGGGTTTTATAGAGC 59.392 50.000 0.00 0.00 0.00 4.09
3058 6314 2.858344 CGCACACGAGGGTTTTATAGAG 59.142 50.000 0.00 0.00 43.93 2.43
3059 6315 2.492881 TCGCACACGAGGGTTTTATAGA 59.507 45.455 0.00 0.00 45.12 1.98
3060 6316 2.883574 TCGCACACGAGGGTTTTATAG 58.116 47.619 0.00 0.00 45.12 1.31
3062 6318 3.919163 TCGCACACGAGGGTTTTAT 57.081 47.368 0.00 0.00 45.12 1.40
3082 6338 3.917760 GAGACGGAGGATGGCGGG 61.918 72.222 0.00 0.00 0.00 6.13
3083 6339 2.835431 AGAGACGGAGGATGGCGG 60.835 66.667 0.00 0.00 0.00 6.13
3084 6340 1.791103 GAGAGAGACGGAGGATGGCG 61.791 65.000 0.00 0.00 0.00 5.69
3085 6341 0.467290 AGAGAGAGACGGAGGATGGC 60.467 60.000 0.00 0.00 0.00 4.40
3086 6342 1.604604 GAGAGAGAGACGGAGGATGG 58.395 60.000 0.00 0.00 0.00 3.51
3087 6343 1.142870 AGGAGAGAGAGACGGAGGATG 59.857 57.143 0.00 0.00 0.00 3.51
3088 6344 1.518367 AGGAGAGAGAGACGGAGGAT 58.482 55.000 0.00 0.00 0.00 3.24
3089 6345 1.291109 AAGGAGAGAGAGACGGAGGA 58.709 55.000 0.00 0.00 0.00 3.71
3090 6346 2.021457 GAAAGGAGAGAGAGACGGAGG 58.979 57.143 0.00 0.00 0.00 4.30
3091 6347 2.999331 AGAAAGGAGAGAGAGACGGAG 58.001 52.381 0.00 0.00 0.00 4.63
3092 6348 3.009695 AGAAGAAAGGAGAGAGAGACGGA 59.990 47.826 0.00 0.00 0.00 4.69
3093 6349 3.352648 AGAAGAAAGGAGAGAGAGACGG 58.647 50.000 0.00 0.00 0.00 4.79
3094 6350 3.377172 GGAGAAGAAAGGAGAGAGAGACG 59.623 52.174 0.00 0.00 0.00 4.18
3095 6351 4.600062 AGGAGAAGAAAGGAGAGAGAGAC 58.400 47.826 0.00 0.00 0.00 3.36
3096 6352 4.625324 CGAGGAGAAGAAAGGAGAGAGAGA 60.625 50.000 0.00 0.00 0.00 3.10
3097 6353 3.627577 CGAGGAGAAGAAAGGAGAGAGAG 59.372 52.174 0.00 0.00 0.00 3.20
3098 6354 3.616219 CGAGGAGAAGAAAGGAGAGAGA 58.384 50.000 0.00 0.00 0.00 3.10
3099 6355 2.099098 GCGAGGAGAAGAAAGGAGAGAG 59.901 54.545 0.00 0.00 0.00 3.20
3100 6356 2.096248 GCGAGGAGAAGAAAGGAGAGA 58.904 52.381 0.00 0.00 0.00 3.10
3101 6357 2.099405 AGCGAGGAGAAGAAAGGAGAG 58.901 52.381 0.00 0.00 0.00 3.20
3102 6358 2.223803 AGCGAGGAGAAGAAAGGAGA 57.776 50.000 0.00 0.00 0.00 3.71
3103 6359 2.495669 AGAAGCGAGGAGAAGAAAGGAG 59.504 50.000 0.00 0.00 0.00 3.69
3104 6360 2.232452 CAGAAGCGAGGAGAAGAAAGGA 59.768 50.000 0.00 0.00 0.00 3.36
3105 6361 2.615869 CAGAAGCGAGGAGAAGAAAGG 58.384 52.381 0.00 0.00 0.00 3.11
3106 6362 2.028567 ACCAGAAGCGAGGAGAAGAAAG 60.029 50.000 0.00 0.00 0.00 2.62
3107 6363 1.971357 ACCAGAAGCGAGGAGAAGAAA 59.029 47.619 0.00 0.00 0.00 2.52
3108 6364 1.273606 CACCAGAAGCGAGGAGAAGAA 59.726 52.381 0.00 0.00 0.00 2.52
3109 6365 0.891373 CACCAGAAGCGAGGAGAAGA 59.109 55.000 0.00 0.00 0.00 2.87
3110 6366 0.739112 GCACCAGAAGCGAGGAGAAG 60.739 60.000 0.00 0.00 0.00 2.85
3111 6367 1.293498 GCACCAGAAGCGAGGAGAA 59.707 57.895 0.00 0.00 0.00 2.87
3112 6368 2.650116 GGCACCAGAAGCGAGGAGA 61.650 63.158 0.00 0.00 0.00 3.71
3113 6369 2.125350 GGCACCAGAAGCGAGGAG 60.125 66.667 0.00 0.00 0.00 3.69
3136 6392 4.090057 GAACAAGGTCGCAGCGGC 62.090 66.667 16.42 14.34 0.00 6.53
3137 6393 3.423154 GGAACAAGGTCGCAGCGG 61.423 66.667 16.42 0.00 0.00 5.52
3138 6394 2.357517 AGGAACAAGGTCGCAGCG 60.358 61.111 9.06 9.06 0.00 5.18
3139 6395 2.383527 CGAGGAACAAGGTCGCAGC 61.384 63.158 0.00 0.00 0.00 5.25
3140 6396 3.862124 CGAGGAACAAGGTCGCAG 58.138 61.111 0.00 0.00 0.00 5.18
3143 6399 1.446272 GAGGCGAGGAACAAGGTCG 60.446 63.158 0.00 0.00 36.77 4.79
3144 6400 1.079057 GGAGGCGAGGAACAAGGTC 60.079 63.158 0.00 0.00 0.00 3.85
3145 6401 1.831652 CTGGAGGCGAGGAACAAGGT 61.832 60.000 0.00 0.00 0.00 3.50
3146 6402 1.078848 CTGGAGGCGAGGAACAAGG 60.079 63.158 0.00 0.00 0.00 3.61
3147 6403 1.743252 GCTGGAGGCGAGGAACAAG 60.743 63.158 0.00 0.00 0.00 3.16
3148 6404 2.347490 GCTGGAGGCGAGGAACAA 59.653 61.111 0.00 0.00 0.00 2.83
3176 6432 4.090057 GAACAAGGTCGCAGCGGC 62.090 66.667 16.42 14.34 0.00 6.53
3177 6433 3.423154 GGAACAAGGTCGCAGCGG 61.423 66.667 16.42 0.00 0.00 5.52
3178 6434 2.357517 AGGAACAAGGTCGCAGCG 60.358 61.111 9.06 9.06 0.00 5.18
3179 6435 2.383527 CGAGGAACAAGGTCGCAGC 61.384 63.158 0.00 0.00 0.00 5.25
3180 6436 3.862124 CGAGGAACAAGGTCGCAG 58.138 61.111 0.00 0.00 0.00 5.18
3183 6439 1.446272 GAGGCGAGGAACAAGGTCG 60.446 63.158 0.00 0.00 36.77 4.79
3184 6440 1.079057 GGAGGCGAGGAACAAGGTC 60.079 63.158 0.00 0.00 0.00 3.85
3185 6441 1.831652 CTGGAGGCGAGGAACAAGGT 61.832 60.000 0.00 0.00 0.00 3.50
3186 6442 1.078848 CTGGAGGCGAGGAACAAGG 60.079 63.158 0.00 0.00 0.00 3.61
3187 6443 1.743252 GCTGGAGGCGAGGAACAAG 60.743 63.158 0.00 0.00 0.00 3.16
3188 6444 2.347490 GCTGGAGGCGAGGAACAA 59.653 61.111 0.00 0.00 0.00 2.83
3211 6467 4.785453 GAAGGCACTGGAGGCGGG 62.785 72.222 0.00 0.00 40.86 6.13
3212 6468 3.259633 AAGAAGGCACTGGAGGCGG 62.260 63.158 0.00 0.00 40.86 6.13
3213 6469 1.743252 GAAGAAGGCACTGGAGGCG 60.743 63.158 0.00 0.00 40.86 5.52
3214 6470 1.377856 GGAAGAAGGCACTGGAGGC 60.378 63.158 0.00 0.00 40.86 4.70
3215 6471 1.301293 GGGAAGAAGGCACTGGAGG 59.699 63.158 0.00 0.00 40.86 4.30
3216 6472 1.301293 GGGGAAGAAGGCACTGGAG 59.699 63.158 0.00 0.00 40.86 3.86
3217 6473 2.592993 CGGGGAAGAAGGCACTGGA 61.593 63.158 0.00 0.00 40.86 3.86
3218 6474 2.045926 CGGGGAAGAAGGCACTGG 60.046 66.667 0.00 0.00 40.86 4.00
3219 6475 2.747855 GCGGGGAAGAAGGCACTG 60.748 66.667 0.00 0.00 40.86 3.66
3266 6522 4.849329 CGTCGTGGTAGCCGGAGC 62.849 72.222 5.05 0.00 40.32 4.70
3267 6523 3.392595 GACGTCGTGGTAGCCGGAG 62.393 68.421 5.05 0.00 0.00 4.63
3268 6524 3.434319 GACGTCGTGGTAGCCGGA 61.434 66.667 5.05 0.00 0.00 5.14
3269 6525 4.487412 GGACGTCGTGGTAGCCGG 62.487 72.222 9.92 0.00 0.00 6.13
3270 6526 4.824166 CGGACGTCGTGGTAGCCG 62.824 72.222 9.92 5.19 0.00 5.52
3272 6528 4.409218 TGCGGACGTCGTGGTAGC 62.409 66.667 9.92 8.41 41.72 3.58
3273 6529 2.503375 GTGCGGACGTCGTGGTAG 60.503 66.667 9.92 0.00 41.72 3.18
3274 6530 4.041917 GGTGCGGACGTCGTGGTA 62.042 66.667 9.92 0.00 41.72 3.25
3291 6547 2.909457 AATACATGCTGGCGGGGTGG 62.909 60.000 0.00 0.00 0.00 4.61
3292 6548 0.179032 TAATACATGCTGGCGGGGTG 60.179 55.000 0.00 0.00 0.00 4.61
3293 6549 0.179029 GTAATACATGCTGGCGGGGT 60.179 55.000 0.00 0.00 0.00 4.95
3294 6550 1.227999 CGTAATACATGCTGGCGGGG 61.228 60.000 0.00 0.00 0.00 5.73
3295 6551 1.841663 GCGTAATACATGCTGGCGGG 61.842 60.000 0.00 0.00 36.15 6.13
3296 6552 1.569493 GCGTAATACATGCTGGCGG 59.431 57.895 0.00 0.00 36.15 6.13
3297 6553 1.201578 CGCGTAATACATGCTGGCG 59.798 57.895 0.00 0.00 36.99 5.69
3298 6554 0.878523 TCCGCGTAATACATGCTGGC 60.879 55.000 4.92 0.00 36.99 4.85
3299 6555 1.139989 CTCCGCGTAATACATGCTGG 58.860 55.000 4.92 0.00 36.99 4.85
3300 6556 2.134201 TCTCCGCGTAATACATGCTG 57.866 50.000 4.92 0.00 36.99 4.41
3301 6557 2.352814 GGATCTCCGCGTAATACATGCT 60.353 50.000 4.92 0.00 36.99 3.79
3302 6558 1.993370 GGATCTCCGCGTAATACATGC 59.007 52.381 4.92 0.00 35.67 4.06
3322 6578 0.379669 AGACGTGTATTACCGGAGCG 59.620 55.000 9.46 3.97 0.00 5.03
3323 6579 1.596464 CGAGACGTGTATTACCGGAGC 60.596 57.143 9.46 0.00 0.00 4.70
3324 6580 1.003116 CCGAGACGTGTATTACCGGAG 60.003 57.143 9.46 0.00 37.87 4.63
3325 6581 1.016627 CCGAGACGTGTATTACCGGA 58.983 55.000 9.46 0.00 37.87 5.14
3326 6582 0.734889 ACCGAGACGTGTATTACCGG 59.265 55.000 0.00 0.00 41.04 5.28
3327 6583 1.667724 AGACCGAGACGTGTATTACCG 59.332 52.381 0.00 0.00 0.00 4.02
3328 6584 2.286067 CGAGACCGAGACGTGTATTACC 60.286 54.545 0.00 0.00 38.22 2.85
3329 6585 2.604914 TCGAGACCGAGACGTGTATTAC 59.395 50.000 0.00 0.00 40.30 1.89
3330 6586 2.892374 TCGAGACCGAGACGTGTATTA 58.108 47.619 0.00 0.00 40.30 0.98
3331 6587 1.730501 TCGAGACCGAGACGTGTATT 58.269 50.000 0.00 0.00 40.30 1.89
3332 6588 3.448267 TCGAGACCGAGACGTGTAT 57.552 52.632 0.00 0.00 40.30 2.29
3333 6589 4.994744 TCGAGACCGAGACGTGTA 57.005 55.556 0.00 0.00 40.30 2.90
3348 6604 3.996744 GGCGGTCTCGAACGTCTCG 62.997 68.421 6.22 12.07 43.75 4.04
3349 6605 2.202453 GGCGGTCTCGAACGTCTC 60.202 66.667 6.22 0.00 43.75 3.36
3350 6606 3.745803 GGGCGGTCTCGAACGTCT 61.746 66.667 8.95 0.00 46.74 4.18
3351 6607 4.047059 TGGGCGGTCTCGAACGTC 62.047 66.667 6.22 3.03 46.86 4.34
3352 6608 4.353437 GTGGGCGGTCTCGAACGT 62.353 66.667 6.22 0.00 44.66 3.99
3353 6609 3.851845 TTGTGGGCGGTCTCGAACG 62.852 63.158 0.00 0.00 45.82 3.95
3354 6610 2.027625 CTTGTGGGCGGTCTCGAAC 61.028 63.158 0.00 0.00 39.00 3.95
3355 6611 2.342279 CTTGTGGGCGGTCTCGAA 59.658 61.111 0.00 0.00 39.00 3.71
3356 6612 3.691342 CCTTGTGGGCGGTCTCGA 61.691 66.667 0.00 0.00 39.00 4.04
3395 6651 4.680237 TCAAGAGGCGCCACACCG 62.680 66.667 31.54 14.75 0.00 4.94
3396 6652 2.743928 CTCAAGAGGCGCCACACC 60.744 66.667 31.54 14.54 0.00 4.16
3397 6653 2.743928 CCTCAAGAGGCGCCACAC 60.744 66.667 31.54 19.23 42.44 3.82
3406 6662 2.383527 GCGAACGTGGCCTCAAGAG 61.384 63.158 3.32 0.00 0.00 2.85
3407 6663 2.357034 GCGAACGTGGCCTCAAGA 60.357 61.111 3.32 0.00 0.00 3.02
3408 6664 2.664851 TGCGAACGTGGCCTCAAG 60.665 61.111 3.32 0.00 0.00 3.02
3409 6665 2.449031 ATCTGCGAACGTGGCCTCAA 62.449 55.000 3.32 0.00 0.00 3.02
3410 6666 2.942796 ATCTGCGAACGTGGCCTCA 61.943 57.895 3.32 0.00 0.00 3.86
3411 6667 2.125512 ATCTGCGAACGTGGCCTC 60.126 61.111 3.32 0.00 0.00 4.70
3412 6668 2.434884 CATCTGCGAACGTGGCCT 60.435 61.111 3.32 0.00 0.00 5.19
3413 6669 1.369091 ATTCATCTGCGAACGTGGCC 61.369 55.000 9.11 0.00 0.00 5.36
3414 6670 0.447801 AATTCATCTGCGAACGTGGC 59.552 50.000 4.99 4.99 0.00 5.01
3415 6671 2.416547 AGAAATTCATCTGCGAACGTGG 59.583 45.455 0.00 0.00 0.00 4.94
3416 6672 3.663908 GAGAAATTCATCTGCGAACGTG 58.336 45.455 0.00 0.00 0.00 4.49
3417 6673 2.345641 CGAGAAATTCATCTGCGAACGT 59.654 45.455 0.00 0.00 0.00 3.99
3418 6674 2.285256 CCGAGAAATTCATCTGCGAACG 60.285 50.000 0.00 0.00 0.00 3.95
3419 6675 2.930040 TCCGAGAAATTCATCTGCGAAC 59.070 45.455 0.00 0.00 0.00 3.95
3420 6676 2.930040 GTCCGAGAAATTCATCTGCGAA 59.070 45.455 0.00 0.00 0.00 4.70
3421 6677 2.540515 GTCCGAGAAATTCATCTGCGA 58.459 47.619 0.00 0.00 0.00 5.10
3422 6678 1.256376 CGTCCGAGAAATTCATCTGCG 59.744 52.381 0.00 0.00 0.00 5.18
3423 6679 1.004504 GCGTCCGAGAAATTCATCTGC 60.005 52.381 0.00 0.00 0.00 4.26
3424 6680 1.256376 CGCGTCCGAGAAATTCATCTG 59.744 52.381 0.00 0.00 36.29 2.90
3425 6681 1.560923 CGCGTCCGAGAAATTCATCT 58.439 50.000 0.00 0.00 36.29 2.90
3426 6682 0.042967 GCGCGTCCGAGAAATTCATC 60.043 55.000 8.43 0.00 36.29 2.92
3427 6683 0.739462 TGCGCGTCCGAGAAATTCAT 60.739 50.000 8.43 0.00 36.29 2.57
3428 6684 1.351430 CTGCGCGTCCGAGAAATTCA 61.351 55.000 8.43 0.00 36.29 2.57
3429 6685 1.076533 TCTGCGCGTCCGAGAAATTC 61.077 55.000 8.43 0.00 36.29 2.17
3430 6686 1.080093 TCTGCGCGTCCGAGAAATT 60.080 52.632 8.43 0.00 36.29 1.82
3431 6687 1.805945 GTCTGCGCGTCCGAGAAAT 60.806 57.895 8.43 0.00 36.29 2.17
3432 6688 2.430244 GTCTGCGCGTCCGAGAAA 60.430 61.111 8.43 0.00 36.29 2.52
3433 6689 4.753877 CGTCTGCGCGTCCGAGAA 62.754 66.667 8.43 0.00 36.29 2.87
3442 6698 3.782244 CTGTTGGCTCGTCTGCGC 61.782 66.667 0.00 0.00 38.14 6.09
3443 6699 3.114616 CCTGTTGGCTCGTCTGCG 61.115 66.667 0.00 0.00 39.92 5.18
3453 6709 4.335647 AGGTCCTGCGCCTGTTGG 62.336 66.667 4.18 0.00 34.56 3.77
3454 6710 2.743928 GAGGTCCTGCGCCTGTTG 60.744 66.667 4.18 0.00 36.29 3.33
3455 6711 4.379243 CGAGGTCCTGCGCCTGTT 62.379 66.667 4.18 0.00 36.29 3.16
3461 6717 4.803426 GAGGCACGAGGTCCTGCG 62.803 72.222 0.00 2.42 33.94 5.18
3462 6718 4.459089 GGAGGCACGAGGTCCTGC 62.459 72.222 0.00 0.00 33.73 4.85
3463 6719 4.135153 CGGAGGCACGAGGTCCTG 62.135 72.222 0.00 0.00 35.47 3.86
3475 6731 2.354773 GATTAGTCGCGGCGGAGG 60.355 66.667 23.46 0.00 0.00 4.30
3476 6732 1.944676 GTGATTAGTCGCGGCGGAG 60.945 63.158 23.46 0.00 0.00 4.63
3477 6733 2.103538 GTGATTAGTCGCGGCGGA 59.896 61.111 23.46 6.48 0.00 5.54
3478 6734 2.960129 GGTGATTAGTCGCGGCGG 60.960 66.667 23.46 3.89 35.69 6.13
3479 6735 3.320078 CGGTGATTAGTCGCGGCG 61.320 66.667 17.70 17.70 35.69 6.46
3480 6736 2.103538 TCGGTGATTAGTCGCGGC 59.896 61.111 0.21 0.21 35.76 6.53
3481 6737 1.937846 CGTCGGTGATTAGTCGCGG 60.938 63.158 6.13 0.61 35.69 6.46
3482 6738 0.924363 CTCGTCGGTGATTAGTCGCG 60.924 60.000 0.00 0.00 35.69 5.87
3483 6739 0.591741 CCTCGTCGGTGATTAGTCGC 60.592 60.000 0.00 0.00 0.00 5.19
3484 6740 1.012086 TCCTCGTCGGTGATTAGTCG 58.988 55.000 0.00 0.00 0.00 4.18
3485 6741 1.065251 GGTCCTCGTCGGTGATTAGTC 59.935 57.143 0.00 0.00 0.00 2.59
3486 6742 1.101331 GGTCCTCGTCGGTGATTAGT 58.899 55.000 0.00 0.00 0.00 2.24
3487 6743 0.029035 CGGTCCTCGTCGGTGATTAG 59.971 60.000 0.00 0.00 0.00 1.73
3488 6744 1.996786 GCGGTCCTCGTCGGTGATTA 61.997 60.000 0.00 0.00 41.72 1.75
3489 6745 2.882876 CGGTCCTCGTCGGTGATT 59.117 61.111 0.00 0.00 0.00 2.57
3490 6746 3.823330 GCGGTCCTCGTCGGTGAT 61.823 66.667 0.00 0.00 41.72 3.06
3492 6748 4.778415 CAGCGGTCCTCGTCGGTG 62.778 72.222 0.00 0.00 45.78 4.94
3495 6751 4.498520 ATGCAGCGGTCCTCGTCG 62.499 66.667 0.00 0.00 41.72 5.12
3496 6752 1.725557 TAGATGCAGCGGTCCTCGTC 61.726 60.000 0.00 0.00 41.72 4.20
3497 6753 1.729470 CTAGATGCAGCGGTCCTCGT 61.729 60.000 0.00 0.00 41.72 4.18
3498 6754 1.007964 CTAGATGCAGCGGTCCTCG 60.008 63.158 0.00 0.00 42.76 4.63
3499 6755 1.300542 GCTAGATGCAGCGGTCCTC 60.301 63.158 0.00 0.00 42.31 3.71
3500 6756 2.818132 GCTAGATGCAGCGGTCCT 59.182 61.111 0.00 0.00 42.31 3.85
3506 6762 2.664518 GCCTCCGCTAGATGCAGC 60.665 66.667 0.00 0.00 43.06 5.25
3507 6763 2.355599 CGCCTCCGCTAGATGCAG 60.356 66.667 0.00 0.00 43.06 4.41
3508 6764 2.833121 TCGCCTCCGCTAGATGCA 60.833 61.111 0.00 0.00 43.06 3.96
3509 6765 2.049618 CTCGCCTCCGCTAGATGC 60.050 66.667 0.00 0.00 38.57 3.91
3510 6766 1.169661 ACTCTCGCCTCCGCTAGATG 61.170 60.000 0.00 0.00 36.33 2.90
3511 6767 1.149627 ACTCTCGCCTCCGCTAGAT 59.850 57.895 0.00 0.00 36.33 1.98
3512 6768 1.820056 CACTCTCGCCTCCGCTAGA 60.820 63.158 0.00 0.00 35.64 2.43
3513 6769 2.718731 CACTCTCGCCTCCGCTAG 59.281 66.667 0.00 0.00 0.00 3.42
3514 6770 3.518998 GCACTCTCGCCTCCGCTA 61.519 66.667 0.00 0.00 0.00 4.26
3523 6779 4.200283 GAGGAGGCGGCACTCTCG 62.200 72.222 21.18 0.00 37.63 4.04
3524 6780 2.362329 GATGAGGAGGCGGCACTCTC 62.362 65.000 25.98 20.91 37.63 3.20
3525 6781 2.364842 ATGAGGAGGCGGCACTCT 60.365 61.111 25.98 14.69 37.63 3.24
3526 6782 2.107953 GATGAGGAGGCGGCACTC 59.892 66.667 21.51 21.51 36.76 3.51
3527 6783 3.842923 CGATGAGGAGGCGGCACT 61.843 66.667 13.08 9.09 0.00 4.40
3579 6835 3.432051 ATTCTCCGGGAAGCGCTCG 62.432 63.158 12.06 10.69 37.36 5.03
3580 6836 1.884926 CATTCTCCGGGAAGCGCTC 60.885 63.158 12.06 4.06 37.36 5.03
3581 6837 2.185310 AACATTCTCCGGGAAGCGCT 62.185 55.000 2.64 2.64 37.36 5.92
3582 6838 1.745489 AACATTCTCCGGGAAGCGC 60.745 57.895 0.00 0.00 37.36 5.92
3583 6839 1.982073 GCAACATTCTCCGGGAAGCG 61.982 60.000 0.00 2.75 37.36 4.68
3584 6840 1.657751 GGCAACATTCTCCGGGAAGC 61.658 60.000 0.00 4.02 37.36 3.86
3585 6841 1.369091 CGGCAACATTCTCCGGGAAG 61.369 60.000 0.00 0.00 39.52 3.46
3586 6842 1.376683 CGGCAACATTCTCCGGGAA 60.377 57.895 0.00 4.52 39.52 3.97
3587 6843 2.267642 CGGCAACATTCTCCGGGA 59.732 61.111 0.00 0.00 39.52 5.14
3588 6844 3.508840 GCGGCAACATTCTCCGGG 61.509 66.667 0.00 0.00 43.11 5.73
3589 6845 2.745884 TGCGGCAACATTCTCCGG 60.746 61.111 0.00 0.00 43.11 5.14
3590 6846 1.699656 CTCTGCGGCAACATTCTCCG 61.700 60.000 3.44 0.00 45.46 4.63
3591 6847 1.372087 CCTCTGCGGCAACATTCTCC 61.372 60.000 3.44 0.00 0.00 3.71
3592 6848 0.391661 TCCTCTGCGGCAACATTCTC 60.392 55.000 3.44 0.00 0.00 2.87
3593 6849 0.392193 CTCCTCTGCGGCAACATTCT 60.392 55.000 3.44 0.00 0.00 2.40
3594 6850 1.372087 CCTCCTCTGCGGCAACATTC 61.372 60.000 3.44 0.00 0.00 2.67
3595 6851 1.377725 CCTCCTCTGCGGCAACATT 60.378 57.895 3.44 0.00 0.00 2.71
3596 6852 2.270205 CCTCCTCTGCGGCAACAT 59.730 61.111 3.44 0.00 0.00 2.71
3597 6853 4.020617 CCCTCCTCTGCGGCAACA 62.021 66.667 3.44 0.00 0.00 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.