Multiple sequence alignment - TraesCS3D01G323900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G323900 chr3D 100.000 3768 0 0 1 3768 437028881 437025114 0.000000e+00 6959.0
1 TraesCS3D01G323900 chr3D 76.498 217 37 12 2479 2693 578242905 578242701 5.150000e-19 106.0
2 TraesCS3D01G323900 chr3D 97.500 40 1 0 1490 1529 437025924 437025963 6.750000e-08 69.4
3 TraesCS3D01G323900 chr3D 97.500 40 1 0 2919 2958 437027353 437027392 6.750000e-08 69.4
4 TraesCS3D01G323900 chr3D 100.000 35 0 0 2895 2929 437025799 437025765 8.740000e-07 65.8
5 TraesCS3D01G323900 chr3D 100.000 35 0 0 3083 3117 437025987 437025953 8.740000e-07 65.8
6 TraesCS3D01G323900 chr3B 95.830 1439 34 11 1587 3007 572372635 572371205 0.000000e+00 2302.0
7 TraesCS3D01G323900 chr3B 93.599 578 18 11 997 1572 572373178 572372618 0.000000e+00 845.0
8 TraesCS3D01G323900 chr3B 90.782 499 24 14 296 780 572374291 572373801 0.000000e+00 647.0
9 TraesCS3D01G323900 chr3B 96.347 219 7 1 775 992 572373771 572373553 3.580000e-95 359.0
10 TraesCS3D01G323900 chr3B 91.748 206 10 5 343 545 572379845 572379644 2.870000e-71 279.0
11 TraesCS3D01G323900 chr3B 89.820 167 17 0 191 357 572380051 572379885 8.200000e-52 215.0
12 TraesCS3D01G323900 chr3B 79.554 269 44 9 2439 2706 771253712 771253970 8.310000e-42 182.0
13 TraesCS3D01G323900 chr3B 88.119 101 2 4 532 631 572379620 572379529 1.110000e-20 111.0
14 TraesCS3D01G323900 chr3B 100.000 39 0 0 2920 2958 572372662 572372700 5.220000e-09 73.1
15 TraesCS3D01G323900 chr3B 95.122 41 1 1 3078 3117 572371332 572371292 3.140000e-06 63.9
16 TraesCS3D01G323900 chr3A 95.853 1302 40 8 1598 2891 575133746 575132451 0.000000e+00 2093.0
17 TraesCS3D01G323900 chr3A 93.050 705 26 10 775 1473 575134470 575133783 0.000000e+00 1009.0
18 TraesCS3D01G323900 chr3A 85.843 664 54 17 3130 3768 575125885 575125237 0.000000e+00 669.0
19 TraesCS3D01G323900 chr3A 88.785 428 27 10 367 780 575134934 575134514 4.340000e-139 505.0
20 TraesCS3D01G323900 chr3A 97.080 137 3 1 130 266 575135412 575135277 2.930000e-56 230.0
21 TraesCS3D01G323900 chr3A 90.076 131 13 0 1 131 575135566 575135696 1.800000e-38 171.0
22 TraesCS3D01G323900 chr1A 80.745 966 144 28 1821 2753 504615485 504616441 0.000000e+00 715.0
23 TraesCS3D01G323900 chr1A 98.246 57 1 0 130 186 94599233 94599177 2.390000e-17 100.0
24 TraesCS3D01G323900 chr1A 98.246 57 1 0 130 186 94707799 94707855 2.390000e-17 100.0
25 TraesCS3D01G323900 chr1B 80.622 965 147 24 1820 2752 549793540 549794496 0.000000e+00 710.0
26 TraesCS3D01G323900 chr1D 79.793 965 155 25 1821 2753 408529040 408529996 0.000000e+00 665.0
27 TraesCS3D01G323900 chrUn 98.246 57 1 0 130 186 223715274 223715330 2.390000e-17 100.0
28 TraesCS3D01G323900 chrUn 98.246 57 1 0 130 186 257855848 257855792 2.390000e-17 100.0
29 TraesCS3D01G323900 chr6D 98.246 57 1 0 130 186 369492907 369492851 2.390000e-17 100.0
30 TraesCS3D01G323900 chr6A 98.246 57 1 0 130 186 375826366 375826310 2.390000e-17 100.0
31 TraesCS3D01G323900 chr4D 98.246 57 1 0 130 186 97364739 97364683 2.390000e-17 100.0
32 TraesCS3D01G323900 chr4D 98.246 57 1 0 130 186 123731470 123731414 2.390000e-17 100.0
33 TraesCS3D01G323900 chr7D 74.000 250 51 13 2509 2754 635517148 635516909 5.180000e-14 89.8
34 TraesCS3D01G323900 chr7A 77.922 154 25 8 2604 2754 730505421 730505568 1.860000e-13 87.9
35 TraesCS3D01G323900 chr7B 82.075 106 13 6 2640 2742 740261884 740261986 6.710000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G323900 chr3D 437025114 437028881 3767 True 2363.533333 6959 100.000000 1 3768 3 chr3D.!!$R2 3767
1 TraesCS3D01G323900 chr3B 572371205 572374291 3086 True 843.380000 2302 94.336000 296 3117 5 chr3B.!!$R1 2821
2 TraesCS3D01G323900 chr3B 572379529 572380051 522 True 201.666667 279 89.895667 191 631 3 chr3B.!!$R2 440
3 TraesCS3D01G323900 chr3A 575132451 575135412 2961 True 959.250000 2093 93.692000 130 2891 4 chr3A.!!$R2 2761
4 TraesCS3D01G323900 chr3A 575125237 575125885 648 True 669.000000 669 85.843000 3130 3768 1 chr3A.!!$R1 638
5 TraesCS3D01G323900 chr1A 504615485 504616441 956 False 715.000000 715 80.745000 1821 2753 1 chr1A.!!$F2 932
6 TraesCS3D01G323900 chr1B 549793540 549794496 956 False 710.000000 710 80.622000 1820 2752 1 chr1B.!!$F1 932
7 TraesCS3D01G323900 chr1D 408529040 408529996 956 False 665.000000 665 79.793000 1821 2753 1 chr1D.!!$F1 932

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
331 332 0.031721 GTAGCGGGAGGTGTAATCGG 59.968 60.0 0.00 0.00 42.76 4.18 F
1130 1953 0.179073 TCGCTTGATTGCTAGCTCCC 60.179 55.0 17.23 5.13 40.13 4.30 F
1333 2158 0.234884 GTTTCGACGGAGCACCAAAG 59.765 55.0 0.00 0.00 35.59 2.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1769 2607 1.068333 GGACGGTAACTGTAAGCACGA 60.068 52.381 0.00 0.0 37.60 4.35 R
2138 2976 1.900351 CCTCGAGGTTCTGCATGGA 59.100 57.895 24.04 0.0 0.00 3.41 R
3325 4203 0.608640 CGTCTTCACTAAGGGGCAGT 59.391 55.000 0.00 0.0 33.22 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.765795 ATACATAGACCTAGTAATGCAAAAGTC 57.234 33.333 0.00 0.00 0.00 3.01
27 28 7.620880 ACATAGACCTAGTAATGCAAAAGTCA 58.379 34.615 0.00 0.00 0.00 3.41
28 29 8.267894 ACATAGACCTAGTAATGCAAAAGTCAT 58.732 33.333 0.00 0.00 0.00 3.06
29 30 8.768955 CATAGACCTAGTAATGCAAAAGTCATC 58.231 37.037 0.00 0.00 0.00 2.92
30 31 5.812642 AGACCTAGTAATGCAAAAGTCATCG 59.187 40.000 0.00 0.00 0.00 3.84
31 32 5.730550 ACCTAGTAATGCAAAAGTCATCGA 58.269 37.500 0.00 0.00 0.00 3.59
32 33 6.170506 ACCTAGTAATGCAAAAGTCATCGAA 58.829 36.000 0.00 0.00 0.00 3.71
33 34 6.653320 ACCTAGTAATGCAAAAGTCATCGAAA 59.347 34.615 0.00 0.00 0.00 3.46
34 35 7.174253 ACCTAGTAATGCAAAAGTCATCGAAAA 59.826 33.333 0.00 0.00 0.00 2.29
35 36 8.184192 CCTAGTAATGCAAAAGTCATCGAAAAT 58.816 33.333 0.00 0.00 0.00 1.82
36 37 7.801547 AGTAATGCAAAAGTCATCGAAAATG 57.198 32.000 0.00 0.00 0.00 2.32
37 38 6.808212 AGTAATGCAAAAGTCATCGAAAATGG 59.192 34.615 0.00 0.00 0.00 3.16
38 39 4.582701 TGCAAAAGTCATCGAAAATGGT 57.417 36.364 0.00 0.00 0.00 3.55
39 40 5.697473 TGCAAAAGTCATCGAAAATGGTA 57.303 34.783 0.00 0.00 0.00 3.25
40 41 6.078202 TGCAAAAGTCATCGAAAATGGTAA 57.922 33.333 0.00 0.00 0.00 2.85
41 42 6.507900 TGCAAAAGTCATCGAAAATGGTAAA 58.492 32.000 0.00 0.00 0.00 2.01
42 43 6.980978 TGCAAAAGTCATCGAAAATGGTAAAA 59.019 30.769 0.00 0.00 0.00 1.52
43 44 7.655328 TGCAAAAGTCATCGAAAATGGTAAAAT 59.345 29.630 0.00 0.00 0.00 1.82
44 45 8.162245 GCAAAAGTCATCGAAAATGGTAAAATC 58.838 33.333 0.00 0.00 0.00 2.17
45 46 8.647226 CAAAAGTCATCGAAAATGGTAAAATCC 58.353 33.333 0.00 0.00 0.00 3.01
46 47 6.119144 AGTCATCGAAAATGGTAAAATCCG 57.881 37.500 0.00 0.00 0.00 4.18
47 48 5.878116 AGTCATCGAAAATGGTAAAATCCGA 59.122 36.000 0.00 0.00 0.00 4.55
48 49 6.373216 AGTCATCGAAAATGGTAAAATCCGAA 59.627 34.615 0.00 0.00 0.00 4.30
49 50 6.468000 GTCATCGAAAATGGTAAAATCCGAAC 59.532 38.462 0.00 0.00 0.00 3.95
50 51 5.943706 TCGAAAATGGTAAAATCCGAACA 57.056 34.783 0.00 0.00 0.00 3.18
51 52 6.503589 TCGAAAATGGTAAAATCCGAACAT 57.496 33.333 0.00 0.00 0.00 2.71
52 53 6.548171 TCGAAAATGGTAAAATCCGAACATC 58.452 36.000 0.00 0.00 0.00 3.06
53 54 6.149640 TCGAAAATGGTAAAATCCGAACATCA 59.850 34.615 0.00 0.00 0.00 3.07
54 55 6.468956 CGAAAATGGTAAAATCCGAACATCAG 59.531 38.462 0.00 0.00 0.00 2.90
55 56 6.834168 AAATGGTAAAATCCGAACATCAGT 57.166 33.333 0.00 0.00 0.00 3.41
56 57 6.834168 AATGGTAAAATCCGAACATCAGTT 57.166 33.333 0.00 0.00 41.64 3.16
57 58 6.834168 ATGGTAAAATCCGAACATCAGTTT 57.166 33.333 0.00 0.00 38.30 2.66
58 59 6.642707 TGGTAAAATCCGAACATCAGTTTT 57.357 33.333 0.00 0.00 38.30 2.43
59 60 7.045126 TGGTAAAATCCGAACATCAGTTTTT 57.955 32.000 0.00 0.00 38.30 1.94
80 81 1.641677 GGATTTCCATCCGAACGCG 59.358 57.895 3.53 3.53 39.93 6.01
81 82 1.087771 GGATTTCCATCCGAACGCGT 61.088 55.000 5.58 5.58 39.93 6.01
82 83 0.300789 GATTTCCATCCGAACGCGTC 59.699 55.000 14.44 5.31 35.23 5.19
83 84 1.087771 ATTTCCATCCGAACGCGTCC 61.088 55.000 14.44 0.00 35.23 4.79
84 85 2.437518 TTTCCATCCGAACGCGTCCA 62.438 55.000 14.44 0.00 35.23 4.02
85 86 2.433491 CCATCCGAACGCGTCCAA 60.433 61.111 14.44 0.00 35.23 3.53
86 87 2.030401 CCATCCGAACGCGTCCAAA 61.030 57.895 14.44 0.00 35.23 3.28
87 88 1.419922 CATCCGAACGCGTCCAAAG 59.580 57.895 14.44 2.04 35.23 2.77
88 89 2.388232 ATCCGAACGCGTCCAAAGC 61.388 57.895 14.44 0.00 35.23 3.51
89 90 4.084888 CCGAACGCGTCCAAAGCC 62.085 66.667 14.44 0.00 35.23 4.35
90 91 3.342627 CGAACGCGTCCAAAGCCA 61.343 61.111 14.44 0.00 0.00 4.75
91 92 2.251371 GAACGCGTCCAAAGCCAC 59.749 61.111 14.44 0.00 0.00 5.01
92 93 2.203153 AACGCGTCCAAAGCCACT 60.203 55.556 14.44 0.00 0.00 4.00
93 94 0.947180 GAACGCGTCCAAAGCCACTA 60.947 55.000 14.44 0.00 0.00 2.74
94 95 0.321298 AACGCGTCCAAAGCCACTAT 60.321 50.000 14.44 0.00 0.00 2.12
95 96 0.533491 ACGCGTCCAAAGCCACTATA 59.467 50.000 5.58 0.00 0.00 1.31
96 97 1.138266 ACGCGTCCAAAGCCACTATAT 59.862 47.619 5.58 0.00 0.00 0.86
97 98 1.792949 CGCGTCCAAAGCCACTATATC 59.207 52.381 0.00 0.00 0.00 1.63
98 99 2.801699 CGCGTCCAAAGCCACTATATCA 60.802 50.000 0.00 0.00 0.00 2.15
99 100 3.202906 GCGTCCAAAGCCACTATATCAA 58.797 45.455 0.00 0.00 0.00 2.57
100 101 3.625764 GCGTCCAAAGCCACTATATCAAA 59.374 43.478 0.00 0.00 0.00 2.69
101 102 4.095782 GCGTCCAAAGCCACTATATCAAAA 59.904 41.667 0.00 0.00 0.00 2.44
102 103 5.569413 CGTCCAAAGCCACTATATCAAAAC 58.431 41.667 0.00 0.00 0.00 2.43
103 104 5.569413 GTCCAAAGCCACTATATCAAAACG 58.431 41.667 0.00 0.00 0.00 3.60
104 105 4.095782 TCCAAAGCCACTATATCAAAACGC 59.904 41.667 0.00 0.00 0.00 4.84
105 106 4.142491 CCAAAGCCACTATATCAAAACGCA 60.142 41.667 0.00 0.00 0.00 5.24
106 107 4.882671 AAGCCACTATATCAAAACGCAG 57.117 40.909 0.00 0.00 0.00 5.18
107 108 4.137116 AGCCACTATATCAAAACGCAGA 57.863 40.909 0.00 0.00 0.00 4.26
108 109 4.122776 AGCCACTATATCAAAACGCAGAG 58.877 43.478 0.00 0.00 0.00 3.35
109 110 4.119862 GCCACTATATCAAAACGCAGAGA 58.880 43.478 0.00 0.00 0.00 3.10
110 111 4.752101 GCCACTATATCAAAACGCAGAGAT 59.248 41.667 0.00 0.00 0.00 2.75
111 112 5.107298 GCCACTATATCAAAACGCAGAGATC 60.107 44.000 0.00 0.00 0.00 2.75
112 113 6.219473 CCACTATATCAAAACGCAGAGATCT 58.781 40.000 0.00 0.00 0.00 2.75
113 114 6.703607 CCACTATATCAAAACGCAGAGATCTT 59.296 38.462 0.00 0.00 0.00 2.40
114 115 7.307042 CCACTATATCAAAACGCAGAGATCTTG 60.307 40.741 0.00 0.00 0.00 3.02
115 116 7.436376 CACTATATCAAAACGCAGAGATCTTGA 59.564 37.037 0.00 0.00 0.00 3.02
116 117 7.981789 ACTATATCAAAACGCAGAGATCTTGAA 59.018 33.333 0.00 0.00 0.00 2.69
117 118 4.997905 TCAAAACGCAGAGATCTTGAAG 57.002 40.909 0.00 0.00 0.00 3.02
118 119 3.187227 TCAAAACGCAGAGATCTTGAAGC 59.813 43.478 0.00 0.00 0.00 3.86
119 120 2.758736 AACGCAGAGATCTTGAAGCT 57.241 45.000 0.00 0.00 0.00 3.74
120 121 2.292103 ACGCAGAGATCTTGAAGCTC 57.708 50.000 0.00 0.00 40.88 4.09
121 122 1.547820 ACGCAGAGATCTTGAAGCTCA 59.452 47.619 0.00 0.00 43.10 4.26
122 123 2.168106 ACGCAGAGATCTTGAAGCTCAT 59.832 45.455 0.00 0.00 43.10 2.90
123 124 2.796031 CGCAGAGATCTTGAAGCTCATC 59.204 50.000 0.00 0.00 43.10 2.92
124 125 3.132925 GCAGAGATCTTGAAGCTCATCC 58.867 50.000 0.00 0.00 43.10 3.51
125 126 3.431905 GCAGAGATCTTGAAGCTCATCCA 60.432 47.826 0.00 0.00 43.10 3.41
126 127 4.121317 CAGAGATCTTGAAGCTCATCCAC 58.879 47.826 0.00 0.00 43.10 4.02
127 128 3.773667 AGAGATCTTGAAGCTCATCCACA 59.226 43.478 0.00 0.00 43.10 4.17
128 129 4.224594 AGAGATCTTGAAGCTCATCCACAA 59.775 41.667 0.00 0.00 43.10 3.33
148 149 1.354368 ACCCATCGGAAAGTGGTGAAT 59.646 47.619 0.00 0.00 33.55 2.57
310 311 1.945354 GATGAAGAGACGGCCGGTGA 61.945 60.000 31.76 5.88 0.00 4.02
328 329 0.743097 GACGTAGCGGGAGGTGTAAT 59.257 55.000 0.00 0.00 42.76 1.89
331 332 0.031721 GTAGCGGGAGGTGTAATCGG 59.968 60.000 0.00 0.00 42.76 4.18
338 339 0.389757 GAGGTGTAATCGGGAGAGCC 59.610 60.000 0.00 0.00 45.48 4.70
342 343 0.681887 TGTAATCGGGAGAGCCGTGA 60.682 55.000 0.00 0.00 45.48 4.35
449 784 6.972328 ACGAAATCATTTGTAATGTGTATGGC 59.028 34.615 0.00 0.00 31.12 4.40
464 799 9.791801 AATGTGTATGGCATTATATCTACAACA 57.208 29.630 4.78 4.04 35.09 3.33
465 800 8.831715 TGTGTATGGCATTATATCTACAACAG 57.168 34.615 4.78 0.00 0.00 3.16
478 813 5.862924 TCTACAACAGTAAATCAGCAAGC 57.137 39.130 0.00 0.00 0.00 4.01
592 967 6.778834 AACAGCCATTTAATGATGATCACA 57.221 33.333 6.50 0.00 0.00 3.58
658 1042 3.149436 CATGCAATGGAAGGTAAACCG 57.851 47.619 0.00 0.00 41.79 4.44
729 1127 1.876714 ACGTACGTGCATGGCGATC 60.877 57.895 22.14 7.80 0.00 3.69
987 1438 1.522569 CTAGGAGCGAACCAAGGGG 59.477 63.158 0.00 0.00 41.29 4.79
1076 1897 2.007608 GGGTGAGTCGAGTAAATTGCC 58.992 52.381 0.00 0.00 0.00 4.52
1078 1899 2.415512 GGTGAGTCGAGTAAATTGCCAC 59.584 50.000 0.00 0.00 0.00 5.01
1080 1903 3.746492 GTGAGTCGAGTAAATTGCCACTT 59.254 43.478 0.00 0.00 0.00 3.16
1130 1953 0.179073 TCGCTTGATTGCTAGCTCCC 60.179 55.000 17.23 5.13 40.13 4.30
1286 2111 3.420893 CAGGAGCAAAAGGGTTATGTCA 58.579 45.455 0.00 0.00 0.00 3.58
1287 2112 4.019174 CAGGAGCAAAAGGGTTATGTCAT 58.981 43.478 0.00 0.00 0.00 3.06
1288 2113 4.019174 AGGAGCAAAAGGGTTATGTCATG 58.981 43.478 0.00 0.00 0.00 3.07
1289 2114 3.763897 GGAGCAAAAGGGTTATGTCATGT 59.236 43.478 0.00 0.00 0.00 3.21
1291 2116 4.151883 AGCAAAAGGGTTATGTCATGTGT 58.848 39.130 0.00 0.00 0.00 3.72
1292 2117 4.218417 AGCAAAAGGGTTATGTCATGTGTC 59.782 41.667 0.00 0.00 0.00 3.67
1333 2158 0.234884 GTTTCGACGGAGCACCAAAG 59.765 55.000 0.00 0.00 35.59 2.77
1468 2295 7.233962 TGGCATAAATCCGTATAGGTCTCTTTA 59.766 37.037 0.00 0.00 41.99 1.85
1485 2312 9.565213 GGTCTCTTTAATTCATTGTCAATCTTG 57.435 33.333 0.00 0.00 0.00 3.02
1528 2355 8.786826 TTCAACTATATTTGGTAACCTGTCTG 57.213 34.615 3.27 0.00 0.00 3.51
1544 2371 4.506625 CCTGTCTGTGGGGTTTATGAAAGA 60.507 45.833 0.00 0.00 0.00 2.52
1563 2390 6.940298 TGAAAGAGGAACCCTAAAGTACAATG 59.060 38.462 0.00 0.00 31.76 2.82
1564 2391 4.844884 AGAGGAACCCTAAAGTACAATGC 58.155 43.478 0.00 0.00 31.76 3.56
1565 2392 4.288626 AGAGGAACCCTAAAGTACAATGCA 59.711 41.667 0.00 0.00 31.76 3.96
1566 2393 4.332828 AGGAACCCTAAAGTACAATGCAC 58.667 43.478 0.00 0.00 28.47 4.57
1567 2394 4.042934 AGGAACCCTAAAGTACAATGCACT 59.957 41.667 0.00 0.00 28.47 4.40
1568 2395 4.765339 GGAACCCTAAAGTACAATGCACTT 59.235 41.667 0.00 0.00 37.85 3.16
1569 2396 5.941647 GGAACCCTAAAGTACAATGCACTTA 59.058 40.000 0.00 0.00 35.19 2.24
1570 2397 6.602009 GGAACCCTAAAGTACAATGCACTTAT 59.398 38.462 0.00 0.00 35.19 1.73
1571 2398 7.122204 GGAACCCTAAAGTACAATGCACTTATT 59.878 37.037 0.00 0.00 35.19 1.40
1572 2399 8.417273 AACCCTAAAGTACAATGCACTTATTT 57.583 30.769 0.00 0.00 35.19 1.40
1573 2400 8.051901 ACCCTAAAGTACAATGCACTTATTTC 57.948 34.615 0.00 0.00 35.19 2.17
1574 2401 7.668052 ACCCTAAAGTACAATGCACTTATTTCA 59.332 33.333 0.00 0.00 35.19 2.69
1575 2402 7.968405 CCCTAAAGTACAATGCACTTATTTCAC 59.032 37.037 0.00 0.00 35.19 3.18
1576 2403 8.511321 CCTAAAGTACAATGCACTTATTTCACA 58.489 33.333 0.00 0.00 35.19 3.58
1577 2404 9.891828 CTAAAGTACAATGCACTTATTTCACAA 57.108 29.630 0.00 0.00 35.19 3.33
1579 2406 9.593134 AAAGTACAATGCACTTATTTCACAAAA 57.407 25.926 0.00 0.00 35.19 2.44
1580 2407 9.593134 AAGTACAATGCACTTATTTCACAAAAA 57.407 25.926 0.00 0.00 34.50 1.94
1644 2471 5.286267 ACTCTACTCCTTTCCGAACAAAA 57.714 39.130 0.00 0.00 0.00 2.44
1675 2505 9.790344 CTCATTAAGGAATCAAAGGATCTACAT 57.210 33.333 0.00 0.00 31.88 2.29
1681 2511 6.830838 AGGAATCAAAGGATCTACATTGGAAC 59.169 38.462 0.00 0.00 31.88 3.62
1682 2512 6.603201 GGAATCAAAGGATCTACATTGGAACA 59.397 38.462 0.00 0.00 31.88 3.18
1683 2513 7.122650 GGAATCAAAGGATCTACATTGGAACAA 59.877 37.037 0.00 0.00 36.71 2.83
1684 2514 8.059798 AATCAAAGGATCTACATTGGAACAAG 57.940 34.615 0.00 0.00 36.71 3.16
1685 2515 7.123247 AATCAAAGGATCTACATTGGAACAAGG 59.877 37.037 0.00 0.00 36.71 3.61
1723 2553 4.067896 ACGATCAATCCCATGCAGTTATC 58.932 43.478 0.00 0.00 0.00 1.75
1763 2595 3.365820 ACATTTACTTAGTACGTGCGTGC 59.634 43.478 7.55 6.08 0.00 5.34
1769 2607 4.240096 ACTTAGTACGTGCGTGCTAATTT 58.760 39.130 26.29 17.52 46.50 1.82
1772 2610 1.387756 GTACGTGCGTGCTAATTTCGT 59.612 47.619 7.55 0.00 0.00 3.85
1788 2626 2.336554 TCGTGCTTACAGTTACCGTC 57.663 50.000 0.00 0.00 0.00 4.79
1801 2639 3.260884 AGTTACCGTCCATGTGTTCATCT 59.739 43.478 0.00 0.00 31.15 2.90
2446 3305 1.877443 GTGGAGTACGCCAACATGTTT 59.123 47.619 20.71 0.00 40.20 2.83
2456 3315 1.541147 CCAACATGTTTGACGCCATCT 59.459 47.619 8.77 0.00 0.00 2.90
2865 3733 6.457528 CCGATTCTGTTTATTTGAGCTTCTCC 60.458 42.308 0.00 0.00 0.00 3.71
2892 3760 7.732025 TCTCTCATTATCTCTCGAGAAGTACT 58.268 38.462 17.36 3.94 41.36 2.73
2893 3761 8.862085 TCTCTCATTATCTCTCGAGAAGTACTA 58.138 37.037 17.36 0.53 41.36 1.82
2894 3762 8.821147 TCTCATTATCTCTCGAGAAGTACTAC 57.179 38.462 17.36 0.00 41.36 2.73
2997 3875 9.601810 ACCTCATATCATACCTCATAAGTTGTA 57.398 33.333 0.00 0.00 0.00 2.41
2999 3877 9.862371 CTCATATCATACCTCATAAGTTGTACC 57.138 37.037 0.00 0.00 0.00 3.34
3000 3878 9.374711 TCATATCATACCTCATAAGTTGTACCA 57.625 33.333 0.00 0.00 0.00 3.25
3016 3894 9.791801 AAGTTGTACCATATATCATACAATGCA 57.208 29.630 16.15 0.00 39.15 3.96
3017 3895 9.219603 AGTTGTACCATATATCATACAATGCAC 57.780 33.333 16.15 8.41 39.15 4.57
3018 3896 7.826260 TGTACCATATATCATACAATGCACG 57.174 36.000 0.00 0.00 0.00 5.34
3019 3897 7.382898 TGTACCATATATCATACAATGCACGT 58.617 34.615 0.00 0.00 0.00 4.49
3020 3898 6.968131 ACCATATATCATACAATGCACGTC 57.032 37.500 0.00 0.00 0.00 4.34
3021 3899 6.701340 ACCATATATCATACAATGCACGTCT 58.299 36.000 0.00 0.00 0.00 4.18
3022 3900 7.161404 ACCATATATCATACAATGCACGTCTT 58.839 34.615 0.00 0.00 0.00 3.01
3023 3901 8.311109 ACCATATATCATACAATGCACGTCTTA 58.689 33.333 0.00 0.00 0.00 2.10
3024 3902 9.150348 CCATATATCATACAATGCACGTCTTAA 57.850 33.333 0.00 0.00 0.00 1.85
3030 3908 7.915508 TCATACAATGCACGTCTTAATTAAGG 58.084 34.615 22.11 11.51 34.14 2.69
3031 3909 4.981794 ACAATGCACGTCTTAATTAAGGC 58.018 39.130 22.11 20.14 34.68 4.35
3032 3910 4.142469 ACAATGCACGTCTTAATTAAGGCC 60.142 41.667 21.19 12.97 34.53 5.19
3033 3911 3.060736 TGCACGTCTTAATTAAGGCCA 57.939 42.857 21.19 12.32 34.53 5.36
3034 3912 3.006940 TGCACGTCTTAATTAAGGCCAG 58.993 45.455 21.19 15.35 34.53 4.85
3035 3913 3.007635 GCACGTCTTAATTAAGGCCAGT 58.992 45.455 21.19 12.89 34.53 4.00
3036 3914 3.181510 GCACGTCTTAATTAAGGCCAGTG 60.182 47.826 22.97 22.97 34.53 3.66
3037 3915 3.007635 ACGTCTTAATTAAGGCCAGTGC 58.992 45.455 21.19 5.88 34.53 4.40
3038 3916 3.006940 CGTCTTAATTAAGGCCAGTGCA 58.993 45.455 21.19 0.28 40.13 4.57
3039 3917 3.627577 CGTCTTAATTAAGGCCAGTGCAT 59.372 43.478 21.19 0.00 40.13 3.96
3040 3918 4.096382 CGTCTTAATTAAGGCCAGTGCATT 59.904 41.667 21.19 0.00 44.83 3.56
3041 3919 5.343249 GTCTTAATTAAGGCCAGTGCATTG 58.657 41.667 22.11 1.49 42.32 2.82
3042 3920 5.125417 GTCTTAATTAAGGCCAGTGCATTGA 59.875 40.000 22.11 0.00 42.32 2.57
3043 3921 5.893255 TCTTAATTAAGGCCAGTGCATTGAT 59.107 36.000 22.11 0.00 42.32 2.57
3044 3922 4.395959 AATTAAGGCCAGTGCATTGATG 57.604 40.909 11.31 0.00 42.32 3.07
3045 3923 2.804986 TAAGGCCAGTGCATTGATGA 57.195 45.000 11.31 0.00 42.32 2.92
3046 3924 2.154567 AAGGCCAGTGCATTGATGAT 57.845 45.000 11.31 0.00 40.54 2.45
3047 3925 3.301794 AAGGCCAGTGCATTGATGATA 57.698 42.857 11.31 0.00 40.54 2.15
3048 3926 3.520691 AGGCCAGTGCATTGATGATAT 57.479 42.857 11.31 0.00 40.13 1.63
3049 3927 4.645863 AGGCCAGTGCATTGATGATATA 57.354 40.909 11.31 0.00 40.13 0.86
3050 3928 5.188988 AGGCCAGTGCATTGATGATATAT 57.811 39.130 11.31 0.00 40.13 0.86
3051 3929 6.317663 AGGCCAGTGCATTGATGATATATA 57.682 37.500 11.31 0.00 40.13 0.86
3052 3930 6.907961 AGGCCAGTGCATTGATGATATATAT 58.092 36.000 11.31 0.00 40.13 0.86
3053 3931 6.771267 AGGCCAGTGCATTGATGATATATATG 59.229 38.462 11.31 0.00 40.13 1.78
3054 3932 6.544931 GGCCAGTGCATTGATGATATATATGT 59.455 38.462 11.31 0.00 40.13 2.29
3055 3933 7.067859 GGCCAGTGCATTGATGATATATATGTT 59.932 37.037 11.31 0.00 40.13 2.71
3056 3934 8.127327 GCCAGTGCATTGATGATATATATGTTC 58.873 37.037 11.31 0.00 37.47 3.18
3057 3935 9.392259 CCAGTGCATTGATGATATATATGTTCT 57.608 33.333 11.31 0.00 0.00 3.01
3110 3988 9.765795 ACTTAGTATACCATTATTGCTTCAGAC 57.234 33.333 0.00 0.00 0.00 3.51
3111 3989 9.764363 CTTAGTATACCATTATTGCTTCAGACA 57.236 33.333 0.00 0.00 0.00 3.41
3113 3991 8.613060 AGTATACCATTATTGCTTCAGACATG 57.387 34.615 0.00 0.00 0.00 3.21
3114 3992 8.213679 AGTATACCATTATTGCTTCAGACATGT 58.786 33.333 0.00 0.00 0.00 3.21
3115 3993 7.886629 ATACCATTATTGCTTCAGACATGTT 57.113 32.000 0.00 0.00 0.00 2.71
3116 3994 8.978874 ATACCATTATTGCTTCAGACATGTTA 57.021 30.769 0.00 0.00 0.00 2.41
3117 3995 7.886629 ACCATTATTGCTTCAGACATGTTAT 57.113 32.000 0.00 0.00 0.00 1.89
3118 3996 7.934457 ACCATTATTGCTTCAGACATGTTATC 58.066 34.615 0.00 0.00 0.00 1.75
3119 3997 7.776969 ACCATTATTGCTTCAGACATGTTATCT 59.223 33.333 0.00 0.00 0.00 1.98
3120 3998 8.288208 CCATTATTGCTTCAGACATGTTATCTC 58.712 37.037 0.00 0.00 0.00 2.75
3121 3999 9.053840 CATTATTGCTTCAGACATGTTATCTCT 57.946 33.333 0.00 0.00 0.00 3.10
3122 4000 8.654230 TTATTGCTTCAGACATGTTATCTCTC 57.346 34.615 0.00 0.00 0.00 3.20
3123 4001 4.676546 TGCTTCAGACATGTTATCTCTCG 58.323 43.478 0.00 0.00 0.00 4.04
3124 4002 4.158579 TGCTTCAGACATGTTATCTCTCGT 59.841 41.667 0.00 0.00 0.00 4.18
3125 4003 4.737765 GCTTCAGACATGTTATCTCTCGTC 59.262 45.833 0.00 0.00 0.00 4.20
3126 4004 5.677344 GCTTCAGACATGTTATCTCTCGTCA 60.677 44.000 0.00 0.00 0.00 4.35
3127 4005 6.456795 TTCAGACATGTTATCTCTCGTCAT 57.543 37.500 0.00 0.00 0.00 3.06
3128 4006 5.825507 TCAGACATGTTATCTCTCGTCATG 58.174 41.667 0.00 0.00 40.80 3.07
3162 4040 1.075601 TCCAAACAGGGCCTTCATCT 58.924 50.000 1.32 0.00 38.24 2.90
3163 4041 1.180029 CCAAACAGGGCCTTCATCTG 58.820 55.000 1.32 3.13 34.91 2.90
3164 4042 1.272092 CCAAACAGGGCCTTCATCTGA 60.272 52.381 1.32 0.00 33.19 3.27
3165 4043 2.517959 CAAACAGGGCCTTCATCTGAA 58.482 47.619 1.32 0.00 33.19 3.02
3166 4044 2.892852 CAAACAGGGCCTTCATCTGAAA 59.107 45.455 1.32 0.00 33.07 2.69
3167 4045 2.206576 ACAGGGCCTTCATCTGAAAC 57.793 50.000 1.32 0.00 33.07 2.78
3168 4046 1.707427 ACAGGGCCTTCATCTGAAACT 59.293 47.619 1.32 0.00 33.07 2.66
3169 4047 2.912956 ACAGGGCCTTCATCTGAAACTA 59.087 45.455 1.32 0.00 33.07 2.24
3170 4048 3.274288 CAGGGCCTTCATCTGAAACTAC 58.726 50.000 1.32 0.00 33.07 2.73
3171 4049 3.054802 CAGGGCCTTCATCTGAAACTACT 60.055 47.826 1.32 0.00 33.07 2.57
3172 4050 3.589288 AGGGCCTTCATCTGAAACTACTT 59.411 43.478 0.00 0.00 33.07 2.24
3173 4051 4.783227 AGGGCCTTCATCTGAAACTACTTA 59.217 41.667 0.00 0.00 33.07 2.24
3194 4072 4.525912 AAAACTTTGATGAGATGGTGGC 57.474 40.909 0.00 0.00 0.00 5.01
3203 4081 2.995283 TGAGATGGTGGCTTGAGATTG 58.005 47.619 0.00 0.00 0.00 2.67
3234 4112 9.593134 AACAATGACTATGTTTTTGCAAACTAA 57.407 25.926 12.39 1.24 42.61 2.24
3246 4124 4.399004 TGCAAACTAACAGCAACCAAAT 57.601 36.364 0.00 0.00 34.97 2.32
3259 4137 5.184864 CAGCAACCAAATACCCAACTTGATA 59.815 40.000 0.00 0.00 0.00 2.15
3260 4138 5.957774 AGCAACCAAATACCCAACTTGATAT 59.042 36.000 0.00 0.00 0.00 1.63
3270 4148 3.181493 CCCAACTTGATATGACTGCAAGC 60.181 47.826 0.00 0.00 41.97 4.01
3322 4200 6.267699 TGGAGTACGAGAATATTGTCATGGAT 59.732 38.462 12.61 0.00 0.00 3.41
3323 4201 6.587990 GGAGTACGAGAATATTGTCATGGATG 59.412 42.308 12.61 0.00 0.00 3.51
3324 4202 7.055667 AGTACGAGAATATTGTCATGGATGT 57.944 36.000 12.61 4.14 0.00 3.06
3325 4203 8.178313 AGTACGAGAATATTGTCATGGATGTA 57.822 34.615 12.61 3.29 0.00 2.29
3326 4204 8.082852 AGTACGAGAATATTGTCATGGATGTAC 58.917 37.037 12.61 13.18 0.00 2.90
3327 4205 7.055667 ACGAGAATATTGTCATGGATGTACT 57.944 36.000 12.61 0.00 0.00 2.73
3329 4207 6.128715 CGAGAATATTGTCATGGATGTACTGC 60.129 42.308 12.61 0.00 0.00 4.40
3330 4208 6.000219 AGAATATTGTCATGGATGTACTGCC 59.000 40.000 0.00 0.00 0.00 4.85
3331 4209 2.418368 TTGTCATGGATGTACTGCCC 57.582 50.000 0.00 0.00 0.00 5.36
3336 4217 2.705658 TCATGGATGTACTGCCCCTTAG 59.294 50.000 0.00 0.00 0.00 2.18
3342 4223 2.897350 TGTACTGCCCCTTAGTGAAGA 58.103 47.619 0.00 0.00 34.25 2.87
3346 4227 0.895530 TGCCCCTTAGTGAAGACGAG 59.104 55.000 0.00 0.00 34.25 4.18
3356 4237 0.246635 TGAAGACGAGCTGGTAAGGC 59.753 55.000 0.00 0.00 0.00 4.35
3358 4239 0.247736 AAGACGAGCTGGTAAGGCTG 59.752 55.000 0.00 0.00 40.40 4.85
3361 4242 0.037232 ACGAGCTGGTAAGGCTGTTC 60.037 55.000 0.00 0.00 40.40 3.18
3387 4268 5.466974 GCATGTATGCCAATGGGACAAGTA 61.467 45.833 0.00 0.00 45.86 2.24
3388 4269 6.729923 GCATGTATGCCAATGGGACAAGTAT 61.730 44.000 0.00 0.00 45.86 2.12
3398 4279 1.571919 GGACAAGTATAGCCGCACAG 58.428 55.000 0.00 0.00 0.00 3.66
3407 4288 2.486636 TAGCCGCACAGACCTTCACG 62.487 60.000 0.00 0.00 0.00 4.35
3415 4296 3.172050 CACAGACCTTCACGAAGATACG 58.828 50.000 8.38 0.00 40.79 3.06
3428 4309 3.242091 CGAAGATACGCTGGTTCACATTG 60.242 47.826 0.00 0.00 0.00 2.82
3435 4316 1.131126 GCTGGTTCACATTGATCACCG 59.869 52.381 0.00 0.00 31.50 4.94
3442 4323 0.606096 ACATTGATCACCGTGACCGA 59.394 50.000 2.57 0.00 35.63 4.69
3443 4324 1.207089 ACATTGATCACCGTGACCGAT 59.793 47.619 2.57 0.00 35.63 4.18
3446 4327 0.455815 TGATCACCGTGACCGATCTG 59.544 55.000 2.57 0.00 37.14 2.90
3452 4333 0.652592 CCGTGACCGATCTGAATTGC 59.347 55.000 0.00 0.00 35.63 3.56
3481 4362 3.489513 GGCCCCCGCTATCTTGGT 61.490 66.667 0.00 0.00 34.44 3.67
3485 4366 0.035458 CCCCCGCTATCTTGGTGATC 59.965 60.000 0.00 0.00 36.65 2.92
3488 4369 1.688735 CCCGCTATCTTGGTGATCAGA 59.311 52.381 0.00 0.00 36.65 3.27
3489 4370 2.301296 CCCGCTATCTTGGTGATCAGAT 59.699 50.000 0.00 0.00 36.65 2.90
3542 4423 6.732154 CCAAGTGTGGCAATATAGAATCTTG 58.268 40.000 0.00 0.00 38.35 3.02
3546 4427 6.769822 AGTGTGGCAATATAGAATCTTGGAAG 59.230 38.462 0.00 0.00 0.00 3.46
3547 4428 6.767902 GTGTGGCAATATAGAATCTTGGAAGA 59.232 38.462 0.00 0.00 39.78 2.87
3575 4457 2.172505 TGATTACCCGACTTGCCATGAT 59.827 45.455 0.00 0.00 0.00 2.45
3589 4471 3.135348 TGCCATGATCCCAGAACTTCTAG 59.865 47.826 0.00 0.00 0.00 2.43
3621 4503 2.359900 CAACAACCCATCTACTCCAGC 58.640 52.381 0.00 0.00 0.00 4.85
3622 4504 0.537188 ACAACCCATCTACTCCAGCG 59.463 55.000 0.00 0.00 0.00 5.18
3629 4511 2.487445 CCATCTACTCCAGCGGTAGAGA 60.487 54.545 16.92 3.59 45.55 3.10
3630 4512 2.328819 TCTACTCCAGCGGTAGAGAC 57.671 55.000 16.92 0.00 40.16 3.36
3631 4513 0.938713 CTACTCCAGCGGTAGAGACG 59.061 60.000 16.92 3.39 38.99 4.18
3676 4559 6.712547 CCAACTAACTTCCTCAACTGAGAATT 59.287 38.462 8.33 0.41 44.74 2.17
3677 4560 7.095017 CCAACTAACTTCCTCAACTGAGAATTC 60.095 40.741 8.33 0.00 44.74 2.17
3678 4561 7.309770 ACTAACTTCCTCAACTGAGAATTCT 57.690 36.000 7.95 7.95 44.74 2.40
3679 4562 7.382898 ACTAACTTCCTCAACTGAGAATTCTC 58.617 38.462 25.68 25.68 44.74 2.87
3680 4563 4.815269 ACTTCCTCAACTGAGAATTCTCG 58.185 43.478 26.32 22.39 45.72 4.04
3681 4564 4.524714 ACTTCCTCAACTGAGAATTCTCGA 59.475 41.667 26.32 17.49 45.72 4.04
3682 4565 4.442375 TCCTCAACTGAGAATTCTCGAC 57.558 45.455 26.32 8.16 45.72 4.20
3684 4567 4.082517 TCCTCAACTGAGAATTCTCGACTG 60.083 45.833 26.32 21.61 45.72 3.51
3693 4595 0.108615 ATTCTCGACTGCCAAGACCG 60.109 55.000 0.00 0.00 0.00 4.79
3758 4660 3.244630 ACTGCGGTTCCACCAAATAACTA 60.245 43.478 0.00 0.00 38.47 2.24
3764 4666 6.238293 GCGGTTCCACCAAATAACTACTTATC 60.238 42.308 0.00 0.00 38.47 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.765795 GACTTTTGCATTACTAGGTCTATGTAT 57.234 33.333 0.00 0.00 0.00 2.29
1 2 8.755028 TGACTTTTGCATTACTAGGTCTATGTA 58.245 33.333 0.00 0.00 0.00 2.29
2 3 7.620880 TGACTTTTGCATTACTAGGTCTATGT 58.379 34.615 0.00 0.00 0.00 2.29
3 4 8.668510 ATGACTTTTGCATTACTAGGTCTATG 57.331 34.615 0.00 0.00 0.00 2.23
4 5 7.653713 CGATGACTTTTGCATTACTAGGTCTAT 59.346 37.037 0.00 0.00 0.00 1.98
5 6 6.978659 CGATGACTTTTGCATTACTAGGTCTA 59.021 38.462 0.00 0.00 0.00 2.59
6 7 5.812642 CGATGACTTTTGCATTACTAGGTCT 59.187 40.000 0.00 0.00 0.00 3.85
7 8 5.810587 TCGATGACTTTTGCATTACTAGGTC 59.189 40.000 0.00 0.00 0.00 3.85
8 9 5.730550 TCGATGACTTTTGCATTACTAGGT 58.269 37.500 0.00 0.00 0.00 3.08
9 10 6.662414 TTCGATGACTTTTGCATTACTAGG 57.338 37.500 0.00 0.00 0.00 3.02
10 11 9.003112 CATTTTCGATGACTTTTGCATTACTAG 57.997 33.333 0.00 0.00 0.00 2.57
11 12 7.967854 CCATTTTCGATGACTTTTGCATTACTA 59.032 33.333 0.00 0.00 0.00 1.82
12 13 6.808212 CCATTTTCGATGACTTTTGCATTACT 59.192 34.615 0.00 0.00 0.00 2.24
13 14 6.586082 ACCATTTTCGATGACTTTTGCATTAC 59.414 34.615 0.00 0.00 0.00 1.89
14 15 6.686630 ACCATTTTCGATGACTTTTGCATTA 58.313 32.000 0.00 0.00 0.00 1.90
15 16 5.540911 ACCATTTTCGATGACTTTTGCATT 58.459 33.333 0.00 0.00 0.00 3.56
16 17 5.138125 ACCATTTTCGATGACTTTTGCAT 57.862 34.783 0.00 0.00 0.00 3.96
17 18 4.582701 ACCATTTTCGATGACTTTTGCA 57.417 36.364 0.00 0.00 0.00 4.08
18 19 7.401484 TTTTACCATTTTCGATGACTTTTGC 57.599 32.000 0.00 0.00 0.00 3.68
19 20 8.647226 GGATTTTACCATTTTCGATGACTTTTG 58.353 33.333 0.00 0.00 0.00 2.44
20 21 7.540745 CGGATTTTACCATTTTCGATGACTTTT 59.459 33.333 0.00 0.00 0.00 2.27
21 22 7.027161 CGGATTTTACCATTTTCGATGACTTT 58.973 34.615 0.00 0.00 0.00 2.66
22 23 6.373216 TCGGATTTTACCATTTTCGATGACTT 59.627 34.615 0.00 0.00 0.00 3.01
23 24 5.878116 TCGGATTTTACCATTTTCGATGACT 59.122 36.000 0.00 0.00 0.00 3.41
24 25 6.114221 TCGGATTTTACCATTTTCGATGAC 57.886 37.500 0.00 0.00 0.00 3.06
25 26 6.149640 TGTTCGGATTTTACCATTTTCGATGA 59.850 34.615 0.00 0.00 0.00 2.92
26 27 6.318628 TGTTCGGATTTTACCATTTTCGATG 58.681 36.000 0.00 0.00 0.00 3.84
27 28 6.503589 TGTTCGGATTTTACCATTTTCGAT 57.496 33.333 0.00 0.00 0.00 3.59
28 29 5.943706 TGTTCGGATTTTACCATTTTCGA 57.056 34.783 0.00 0.00 0.00 3.71
29 30 6.318628 TGATGTTCGGATTTTACCATTTTCG 58.681 36.000 0.00 0.00 0.00 3.46
30 31 7.312899 ACTGATGTTCGGATTTTACCATTTTC 58.687 34.615 0.00 0.00 0.00 2.29
31 32 7.227049 ACTGATGTTCGGATTTTACCATTTT 57.773 32.000 0.00 0.00 0.00 1.82
32 33 6.834168 ACTGATGTTCGGATTTTACCATTT 57.166 33.333 0.00 0.00 0.00 2.32
33 34 6.834168 AACTGATGTTCGGATTTTACCATT 57.166 33.333 0.00 0.00 0.00 3.16
34 35 6.834168 AAACTGATGTTCGGATTTTACCAT 57.166 33.333 0.00 0.00 34.96 3.55
35 36 6.642707 AAAACTGATGTTCGGATTTTACCA 57.357 33.333 0.00 0.00 34.96 3.25
56 57 4.142556 GCGTTCGGATGGAAATCCTAAAAA 60.143 41.667 0.44 0.00 38.57 1.94
57 58 3.375922 GCGTTCGGATGGAAATCCTAAAA 59.624 43.478 0.44 0.00 38.57 1.52
58 59 2.940410 GCGTTCGGATGGAAATCCTAAA 59.060 45.455 0.44 0.00 38.57 1.85
59 60 2.557317 GCGTTCGGATGGAAATCCTAA 58.443 47.619 0.44 0.00 38.57 2.69
60 61 1.537348 CGCGTTCGGATGGAAATCCTA 60.537 52.381 0.00 0.00 38.57 2.94
61 62 0.810031 CGCGTTCGGATGGAAATCCT 60.810 55.000 0.00 0.00 38.57 3.24
62 63 1.087771 ACGCGTTCGGATGGAAATCC 61.088 55.000 5.58 0.00 40.69 3.01
63 64 0.300789 GACGCGTTCGGATGGAAATC 59.699 55.000 15.53 0.00 40.69 2.17
64 65 1.087771 GGACGCGTTCGGATGGAAAT 61.088 55.000 15.53 0.00 40.69 2.17
65 66 1.738830 GGACGCGTTCGGATGGAAA 60.739 57.895 15.53 0.00 40.69 3.13
66 67 2.125832 GGACGCGTTCGGATGGAA 60.126 61.111 15.53 0.00 40.69 3.53
67 68 2.437518 TTTGGACGCGTTCGGATGGA 62.438 55.000 15.53 0.00 40.69 3.41
68 69 1.966493 CTTTGGACGCGTTCGGATGG 61.966 60.000 15.53 0.00 40.69 3.51
69 70 1.419922 CTTTGGACGCGTTCGGATG 59.580 57.895 15.53 2.53 40.69 3.51
70 71 2.388232 GCTTTGGACGCGTTCGGAT 61.388 57.895 15.53 0.00 40.69 4.18
71 72 3.039588 GCTTTGGACGCGTTCGGA 61.040 61.111 15.53 0.01 40.69 4.55
72 73 4.084888 GGCTTTGGACGCGTTCGG 62.085 66.667 15.53 6.92 40.69 4.30
73 74 3.342627 TGGCTTTGGACGCGTTCG 61.343 61.111 15.53 0.00 42.43 3.95
74 75 0.947180 TAGTGGCTTTGGACGCGTTC 60.947 55.000 15.53 13.50 35.84 3.95
75 76 0.321298 ATAGTGGCTTTGGACGCGTT 60.321 50.000 15.53 0.00 35.84 4.84
76 77 0.533491 TATAGTGGCTTTGGACGCGT 59.467 50.000 13.85 13.85 35.84 6.01
77 78 1.792949 GATATAGTGGCTTTGGACGCG 59.207 52.381 3.53 3.53 35.84 6.01
78 79 2.833794 TGATATAGTGGCTTTGGACGC 58.166 47.619 0.00 0.00 0.00 5.19
79 80 5.569413 GTTTTGATATAGTGGCTTTGGACG 58.431 41.667 0.00 0.00 0.00 4.79
80 81 5.569413 CGTTTTGATATAGTGGCTTTGGAC 58.431 41.667 0.00 0.00 0.00 4.02
81 82 4.095782 GCGTTTTGATATAGTGGCTTTGGA 59.904 41.667 0.00 0.00 0.00 3.53
82 83 4.142491 TGCGTTTTGATATAGTGGCTTTGG 60.142 41.667 0.00 0.00 0.00 3.28
83 84 4.980590 TGCGTTTTGATATAGTGGCTTTG 58.019 39.130 0.00 0.00 0.00 2.77
84 85 4.941263 TCTGCGTTTTGATATAGTGGCTTT 59.059 37.500 0.00 0.00 0.00 3.51
85 86 4.513442 TCTGCGTTTTGATATAGTGGCTT 58.487 39.130 0.00 0.00 0.00 4.35
86 87 4.122776 CTCTGCGTTTTGATATAGTGGCT 58.877 43.478 0.00 0.00 0.00 4.75
87 88 4.119862 TCTCTGCGTTTTGATATAGTGGC 58.880 43.478 0.00 0.00 0.00 5.01
88 89 6.219473 AGATCTCTGCGTTTTGATATAGTGG 58.781 40.000 0.00 0.00 0.00 4.00
89 90 7.436376 TCAAGATCTCTGCGTTTTGATATAGTG 59.564 37.037 0.00 0.00 0.00 2.74
90 91 7.492524 TCAAGATCTCTGCGTTTTGATATAGT 58.507 34.615 0.00 0.00 0.00 2.12
91 92 7.936950 TCAAGATCTCTGCGTTTTGATATAG 57.063 36.000 0.00 0.00 0.00 1.31
92 93 7.042456 GCTTCAAGATCTCTGCGTTTTGATATA 60.042 37.037 0.00 0.00 0.00 0.86
93 94 6.238320 GCTTCAAGATCTCTGCGTTTTGATAT 60.238 38.462 0.00 0.00 0.00 1.63
94 95 5.063944 GCTTCAAGATCTCTGCGTTTTGATA 59.936 40.000 0.00 0.00 0.00 2.15
95 96 4.142730 GCTTCAAGATCTCTGCGTTTTGAT 60.143 41.667 0.00 0.00 0.00 2.57
96 97 3.187227 GCTTCAAGATCTCTGCGTTTTGA 59.813 43.478 0.00 0.00 0.00 2.69
97 98 3.188048 AGCTTCAAGATCTCTGCGTTTTG 59.812 43.478 0.00 0.00 0.00 2.44
98 99 3.406764 AGCTTCAAGATCTCTGCGTTTT 58.593 40.909 0.00 0.00 0.00 2.43
99 100 2.999355 GAGCTTCAAGATCTCTGCGTTT 59.001 45.455 0.00 0.00 0.00 3.60
100 101 2.028658 TGAGCTTCAAGATCTCTGCGTT 60.029 45.455 3.92 0.00 30.68 4.84
101 102 1.547820 TGAGCTTCAAGATCTCTGCGT 59.452 47.619 3.92 0.00 30.68 5.24
102 103 2.290531 TGAGCTTCAAGATCTCTGCG 57.709 50.000 3.92 0.00 30.68 5.18
103 104 3.132925 GGATGAGCTTCAAGATCTCTGC 58.867 50.000 3.92 0.00 30.68 4.26
104 105 4.121317 GTGGATGAGCTTCAAGATCTCTG 58.879 47.826 3.92 0.00 30.68 3.35
105 106 3.773667 TGTGGATGAGCTTCAAGATCTCT 59.226 43.478 3.92 0.00 30.68 3.10
106 107 4.134379 TGTGGATGAGCTTCAAGATCTC 57.866 45.455 3.92 0.00 30.68 2.75
107 108 4.260170 GTTGTGGATGAGCTTCAAGATCT 58.740 43.478 3.92 0.00 30.68 2.75
108 109 3.376546 GGTTGTGGATGAGCTTCAAGATC 59.623 47.826 0.00 0.00 0.00 2.75
109 110 3.350833 GGTTGTGGATGAGCTTCAAGAT 58.649 45.455 0.00 0.00 0.00 2.40
110 111 2.553028 GGGTTGTGGATGAGCTTCAAGA 60.553 50.000 0.00 0.00 0.00 3.02
111 112 1.815003 GGGTTGTGGATGAGCTTCAAG 59.185 52.381 0.00 0.00 0.00 3.02
112 113 1.144708 TGGGTTGTGGATGAGCTTCAA 59.855 47.619 0.00 0.00 0.00 2.69
113 114 0.770499 TGGGTTGTGGATGAGCTTCA 59.230 50.000 0.00 0.00 0.00 3.02
114 115 2.019984 GATGGGTTGTGGATGAGCTTC 58.980 52.381 0.00 0.00 0.00 3.86
115 116 1.679944 CGATGGGTTGTGGATGAGCTT 60.680 52.381 0.00 0.00 0.00 3.74
116 117 0.107508 CGATGGGTTGTGGATGAGCT 60.108 55.000 0.00 0.00 0.00 4.09
117 118 1.097547 CCGATGGGTTGTGGATGAGC 61.098 60.000 0.00 0.00 0.00 4.26
118 119 0.541392 TCCGATGGGTTGTGGATGAG 59.459 55.000 0.00 0.00 33.83 2.90
119 120 0.988063 TTCCGATGGGTTGTGGATGA 59.012 50.000 0.00 0.00 33.83 2.92
120 121 1.745087 CTTTCCGATGGGTTGTGGATG 59.255 52.381 0.00 0.00 33.83 3.51
121 122 1.354368 ACTTTCCGATGGGTTGTGGAT 59.646 47.619 0.00 0.00 33.83 3.41
122 123 0.768622 ACTTTCCGATGGGTTGTGGA 59.231 50.000 0.00 0.00 33.83 4.02
123 124 0.881118 CACTTTCCGATGGGTTGTGG 59.119 55.000 0.00 0.00 33.83 4.17
124 125 0.881118 CCACTTTCCGATGGGTTGTG 59.119 55.000 0.00 2.14 31.83 3.33
125 126 0.476771 ACCACTTTCCGATGGGTTGT 59.523 50.000 0.00 0.00 40.59 3.32
126 127 0.881118 CACCACTTTCCGATGGGTTG 59.119 55.000 0.00 0.00 40.59 3.77
127 128 0.768622 TCACCACTTTCCGATGGGTT 59.231 50.000 0.00 0.00 40.59 4.11
128 129 0.768622 TTCACCACTTTCCGATGGGT 59.231 50.000 0.00 0.00 40.59 4.51
263 264 6.263617 AGGAGAAACTATACGAGACTGGATTC 59.736 42.308 0.00 0.00 0.00 2.52
284 285 1.472376 GCCGTCTCTTCATCCAAGGAG 60.472 57.143 0.00 0.00 32.22 3.69
310 311 0.743097 GATTACACCTCCCGCTACGT 59.257 55.000 0.00 0.00 0.00 3.57
331 332 0.172352 CTTCTCTGTCACGGCTCTCC 59.828 60.000 0.00 0.00 0.00 3.71
338 339 1.194098 ACGTACGTCTTCTCTGTCACG 59.806 52.381 16.72 0.00 38.24 4.35
342 343 3.446184 CGTTACGTACGTCTTCTCTGT 57.554 47.619 26.53 0.00 45.14 3.41
463 798 2.475187 GCTCGTGCTTGCTGATTTACTG 60.475 50.000 1.41 0.00 36.03 2.74
464 799 1.734465 GCTCGTGCTTGCTGATTTACT 59.266 47.619 1.41 0.00 36.03 2.24
465 800 1.464608 TGCTCGTGCTTGCTGATTTAC 59.535 47.619 11.19 0.00 40.48 2.01
478 813 2.032550 CCTGCTAAATCCATTGCTCGTG 59.967 50.000 0.00 0.00 0.00 4.35
592 967 2.417719 CTTCGGTTAGTTTGCTCTGCT 58.582 47.619 0.00 0.00 0.00 4.24
658 1042 1.064952 CCACGTGTGTGTTTTCCCTTC 59.935 52.381 15.65 0.00 44.92 3.46
669 1054 2.332514 CGACCGTACCACGTGTGT 59.667 61.111 15.65 14.16 40.58 3.72
960 1411 0.324368 TTCGCTCCTAGCTTCCCTCA 60.324 55.000 0.00 0.00 39.60 3.86
987 1438 2.606795 CGCGATCATCTTCTCTTCCCTC 60.607 54.545 0.00 0.00 0.00 4.30
1130 1953 4.738252 CCAGCATCAAACAATGATCAATCG 59.262 41.667 0.00 0.00 45.91 3.34
1163 1986 9.654663 AGTGTTCATAACAGTAGGATAAAAGTC 57.345 33.333 0.00 0.00 43.00 3.01
1286 2111 9.691362 GGTTTACATGTTTTTCAATAGACACAT 57.309 29.630 2.30 0.00 0.00 3.21
1287 2112 8.687242 TGGTTTACATGTTTTTCAATAGACACA 58.313 29.630 2.30 0.00 0.00 3.72
1288 2113 9.180678 CTGGTTTACATGTTTTTCAATAGACAC 57.819 33.333 2.30 0.00 0.00 3.67
1289 2114 8.908903 ACTGGTTTACATGTTTTTCAATAGACA 58.091 29.630 2.30 0.00 0.00 3.41
1485 2312 7.524294 AGTTGAAACAAAACATTGATGTCAC 57.476 32.000 0.00 0.00 40.80 3.67
1528 2355 3.762288 GGTTCCTCTTTCATAAACCCCAC 59.238 47.826 0.00 0.00 34.58 4.61
1544 2371 4.042934 AGTGCATTGTACTTTAGGGTTCCT 59.957 41.667 1.11 0.00 37.71 3.36
1586 2413 9.515226 TCCTTAATTAAGAAGTGCATTGTACTT 57.485 29.630 23.95 18.41 40.84 2.24
1587 2414 8.947115 GTCCTTAATTAAGAAGTGCATTGTACT 58.053 33.333 23.95 1.11 35.33 2.73
1588 2415 8.726988 TGTCCTTAATTAAGAAGTGCATTGTAC 58.273 33.333 23.95 0.00 35.33 2.90
1589 2416 8.856153 TGTCCTTAATTAAGAAGTGCATTGTA 57.144 30.769 23.95 0.00 35.33 2.41
1590 2417 7.448469 ACTGTCCTTAATTAAGAAGTGCATTGT 59.552 33.333 23.95 8.84 35.33 2.71
1591 2418 7.820648 ACTGTCCTTAATTAAGAAGTGCATTG 58.179 34.615 23.95 6.43 35.33 2.82
1592 2419 8.947115 GTACTGTCCTTAATTAAGAAGTGCATT 58.053 33.333 23.95 12.05 35.33 3.56
1593 2420 8.322091 AGTACTGTCCTTAATTAAGAAGTGCAT 58.678 33.333 26.20 17.18 35.33 3.96
1594 2421 7.676947 AGTACTGTCCTTAATTAAGAAGTGCA 58.323 34.615 26.20 17.44 35.33 4.57
1644 2471 9.620259 GATCCTTTGATTCCTTAATGAGTTACT 57.380 33.333 0.00 0.00 0.00 2.24
1675 2505 7.345914 TCCCTTTAATTTCTTTCCTTGTTCCAA 59.654 33.333 0.00 0.00 0.00 3.53
1681 2511 6.569179 TCGTCCCTTTAATTTCTTTCCTTG 57.431 37.500 0.00 0.00 0.00 3.61
1682 2512 6.946009 TGATCGTCCCTTTAATTTCTTTCCTT 59.054 34.615 0.00 0.00 0.00 3.36
1683 2513 6.481643 TGATCGTCCCTTTAATTTCTTTCCT 58.518 36.000 0.00 0.00 0.00 3.36
1684 2514 6.753107 TGATCGTCCCTTTAATTTCTTTCC 57.247 37.500 0.00 0.00 0.00 3.13
1685 2515 7.915923 GGATTGATCGTCCCTTTAATTTCTTTC 59.084 37.037 5.81 0.00 0.00 2.62
1763 2595 5.346822 ACGGTAACTGTAAGCACGAAATTAG 59.653 40.000 0.00 0.00 37.60 1.73
1769 2607 1.068333 GGACGGTAACTGTAAGCACGA 60.068 52.381 0.00 0.00 37.60 4.35
1772 2610 2.300723 ACATGGACGGTAACTGTAAGCA 59.699 45.455 0.00 0.00 37.60 3.91
1788 2626 1.395954 CTGCACGAGATGAACACATGG 59.604 52.381 0.00 0.00 0.00 3.66
1801 2639 1.118965 TTCCTTGGACTCCTGCACGA 61.119 55.000 0.00 0.00 0.00 4.35
2138 2976 1.900351 CCTCGAGGTTCTGCATGGA 59.100 57.895 24.04 0.00 0.00 3.41
2446 3305 2.434185 GCGTCCAAGATGGCGTCA 60.434 61.111 9.78 0.00 38.60 4.35
2865 3733 7.439157 ACTTCTCGAGAGATAATGAGAGATG 57.561 40.000 15.94 5.12 38.59 2.90
2995 3873 7.759886 AGACGTGCATTGTATGATATATGGTAC 59.240 37.037 0.00 0.00 0.00 3.34
2997 3875 6.701340 AGACGTGCATTGTATGATATATGGT 58.299 36.000 0.00 0.00 0.00 3.55
3004 3882 8.559536 CCTTAATTAAGACGTGCATTGTATGAT 58.440 33.333 23.95 0.00 35.33 2.45
3005 3883 7.466725 GCCTTAATTAAGACGTGCATTGTATGA 60.467 37.037 23.95 0.00 35.33 2.15
3006 3884 6.632834 GCCTTAATTAAGACGTGCATTGTATG 59.367 38.462 23.95 5.60 35.33 2.39
3007 3885 6.238648 GGCCTTAATTAAGACGTGCATTGTAT 60.239 38.462 23.95 0.00 35.33 2.29
3008 3886 5.065474 GGCCTTAATTAAGACGTGCATTGTA 59.935 40.000 23.95 0.00 35.33 2.41
3009 3887 4.142469 GGCCTTAATTAAGACGTGCATTGT 60.142 41.667 23.95 0.00 35.33 2.71
3010 3888 4.142491 TGGCCTTAATTAAGACGTGCATTG 60.142 41.667 23.95 7.24 35.33 2.82
3011 3889 4.013728 TGGCCTTAATTAAGACGTGCATT 58.986 39.130 23.95 0.00 35.33 3.56
3012 3890 3.616219 TGGCCTTAATTAAGACGTGCAT 58.384 40.909 23.95 0.00 35.33 3.96
3013 3891 3.006940 CTGGCCTTAATTAAGACGTGCA 58.993 45.455 23.95 7.57 35.33 4.57
3014 3892 3.007635 ACTGGCCTTAATTAAGACGTGC 58.992 45.455 23.95 17.91 35.33 5.34
3015 3893 3.181510 GCACTGGCCTTAATTAAGACGTG 60.182 47.826 23.95 22.70 35.33 4.49
3016 3894 3.007635 GCACTGGCCTTAATTAAGACGT 58.992 45.455 23.95 15.02 35.33 4.34
3017 3895 3.006940 TGCACTGGCCTTAATTAAGACG 58.993 45.455 23.95 11.08 40.13 4.18
3018 3896 5.125417 TCAATGCACTGGCCTTAATTAAGAC 59.875 40.000 23.95 14.14 40.13 3.01
3019 3897 5.260424 TCAATGCACTGGCCTTAATTAAGA 58.740 37.500 23.95 5.95 40.13 2.10
3020 3898 5.581126 TCAATGCACTGGCCTTAATTAAG 57.419 39.130 16.90 16.90 40.13 1.85
3021 3899 5.655974 TCATCAATGCACTGGCCTTAATTAA 59.344 36.000 3.32 0.00 40.13 1.40
3022 3900 5.199723 TCATCAATGCACTGGCCTTAATTA 58.800 37.500 3.32 0.00 40.13 1.40
3023 3901 4.025360 TCATCAATGCACTGGCCTTAATT 58.975 39.130 3.32 0.00 40.13 1.40
3024 3902 3.634504 TCATCAATGCACTGGCCTTAAT 58.365 40.909 3.32 0.00 40.13 1.40
3025 3903 3.084536 TCATCAATGCACTGGCCTTAA 57.915 42.857 3.32 0.00 40.13 1.85
3026 3904 2.804986 TCATCAATGCACTGGCCTTA 57.195 45.000 3.32 0.00 40.13 2.69
3027 3905 2.154567 ATCATCAATGCACTGGCCTT 57.845 45.000 3.32 0.00 40.13 4.35
3028 3906 3.520691 ATATCATCAATGCACTGGCCT 57.479 42.857 3.32 0.00 40.13 5.19
3029 3907 6.544931 ACATATATATCATCAATGCACTGGCC 59.455 38.462 0.00 0.00 40.13 5.36
3030 3908 7.563888 ACATATATATCATCAATGCACTGGC 57.436 36.000 0.00 0.00 41.68 4.85
3031 3909 9.392259 AGAACATATATATCATCAATGCACTGG 57.608 33.333 0.00 0.00 0.00 4.00
3084 3962 9.765795 GTCTGAAGCAATAATGGTATACTAAGT 57.234 33.333 2.25 0.00 35.91 2.24
3085 3963 9.764363 TGTCTGAAGCAATAATGGTATACTAAG 57.236 33.333 2.25 0.00 35.91 2.18
3087 3965 9.710900 CATGTCTGAAGCAATAATGGTATACTA 57.289 33.333 2.25 0.00 35.91 1.82
3088 3966 8.213679 ACATGTCTGAAGCAATAATGGTATACT 58.786 33.333 2.25 0.00 35.91 2.12
3089 3967 8.383318 ACATGTCTGAAGCAATAATGGTATAC 57.617 34.615 0.00 0.00 35.91 1.47
3090 3968 8.978874 AACATGTCTGAAGCAATAATGGTATA 57.021 30.769 0.00 0.00 35.91 1.47
3091 3969 7.886629 AACATGTCTGAAGCAATAATGGTAT 57.113 32.000 0.00 0.00 35.91 2.73
3092 3970 8.978874 ATAACATGTCTGAAGCAATAATGGTA 57.021 30.769 0.00 0.00 35.91 3.25
3093 3971 7.776969 AGATAACATGTCTGAAGCAATAATGGT 59.223 33.333 0.00 0.00 39.43 3.55
3094 3972 8.162878 AGATAACATGTCTGAAGCAATAATGG 57.837 34.615 0.00 0.00 0.00 3.16
3095 3973 9.053840 AGAGATAACATGTCTGAAGCAATAATG 57.946 33.333 0.00 0.00 30.86 1.90
3096 3974 9.270640 GAGAGATAACATGTCTGAAGCAATAAT 57.729 33.333 0.00 0.00 32.40 1.28
3097 3975 7.436376 CGAGAGATAACATGTCTGAAGCAATAA 59.564 37.037 0.00 0.00 32.40 1.40
3098 3976 6.920210 CGAGAGATAACATGTCTGAAGCAATA 59.080 38.462 0.00 0.00 32.40 1.90
3099 3977 5.752472 CGAGAGATAACATGTCTGAAGCAAT 59.248 40.000 0.00 0.00 32.40 3.56
3100 3978 5.105063 CGAGAGATAACATGTCTGAAGCAA 58.895 41.667 0.00 0.00 32.40 3.91
3101 3979 4.158579 ACGAGAGATAACATGTCTGAAGCA 59.841 41.667 0.00 0.00 32.40 3.91
3102 3980 4.677584 ACGAGAGATAACATGTCTGAAGC 58.322 43.478 0.00 0.00 32.40 3.86
3103 3981 5.884771 TGACGAGAGATAACATGTCTGAAG 58.115 41.667 0.00 0.00 32.40 3.02
3104 3982 5.897377 TGACGAGAGATAACATGTCTGAA 57.103 39.130 0.00 0.00 32.40 3.02
3105 3983 5.358160 ACATGACGAGAGATAACATGTCTGA 59.642 40.000 0.00 0.00 45.05 3.27
3106 3984 5.458126 CACATGACGAGAGATAACATGTCTG 59.542 44.000 0.00 0.00 45.96 3.51
3107 3985 5.358160 TCACATGACGAGAGATAACATGTCT 59.642 40.000 0.00 0.00 45.96 3.41
3108 3986 5.582550 TCACATGACGAGAGATAACATGTC 58.417 41.667 0.00 0.00 45.96 3.06
3110 3988 6.038985 ACTTCACATGACGAGAGATAACATG 58.961 40.000 0.00 0.00 42.37 3.21
3111 3989 6.214191 ACTTCACATGACGAGAGATAACAT 57.786 37.500 0.00 0.00 0.00 2.71
3112 3990 5.644977 ACTTCACATGACGAGAGATAACA 57.355 39.130 0.00 0.00 0.00 2.41
3113 3991 5.517054 GGAACTTCACATGACGAGAGATAAC 59.483 44.000 0.00 0.00 0.00 1.89
3114 3992 5.419155 AGGAACTTCACATGACGAGAGATAA 59.581 40.000 0.00 0.00 27.25 1.75
3115 3993 4.950475 AGGAACTTCACATGACGAGAGATA 59.050 41.667 0.00 0.00 27.25 1.98
3116 3994 3.766591 AGGAACTTCACATGACGAGAGAT 59.233 43.478 0.00 0.00 27.25 2.75
3117 3995 3.157881 AGGAACTTCACATGACGAGAGA 58.842 45.455 0.00 0.00 27.25 3.10
3118 3996 3.584406 AGGAACTTCACATGACGAGAG 57.416 47.619 0.00 0.00 27.25 3.20
3165 4043 9.574516 ACCATCTCATCAAAGTTTTAAGTAGTT 57.425 29.630 0.00 0.00 0.00 2.24
3166 4044 9.003658 CACCATCTCATCAAAGTTTTAAGTAGT 57.996 33.333 0.00 0.00 0.00 2.73
3167 4045 8.454106 CCACCATCTCATCAAAGTTTTAAGTAG 58.546 37.037 0.00 0.00 0.00 2.57
3168 4046 7.094377 GCCACCATCTCATCAAAGTTTTAAGTA 60.094 37.037 0.00 0.00 0.00 2.24
3169 4047 6.294731 GCCACCATCTCATCAAAGTTTTAAGT 60.295 38.462 0.00 0.00 0.00 2.24
3170 4048 6.071728 AGCCACCATCTCATCAAAGTTTTAAG 60.072 38.462 0.00 0.00 0.00 1.85
3171 4049 5.774690 AGCCACCATCTCATCAAAGTTTTAA 59.225 36.000 0.00 0.00 0.00 1.52
3172 4050 5.324409 AGCCACCATCTCATCAAAGTTTTA 58.676 37.500 0.00 0.00 0.00 1.52
3173 4051 4.154942 AGCCACCATCTCATCAAAGTTTT 58.845 39.130 0.00 0.00 0.00 2.43
3209 4087 9.030301 GTTAGTTTGCAAAAACATAGTCATTGT 57.970 29.630 14.67 0.00 35.20 2.71
3210 4088 9.029243 TGTTAGTTTGCAAAAACATAGTCATTG 57.971 29.630 20.32 0.00 35.20 2.82
3211 4089 9.248291 CTGTTAGTTTGCAAAAACATAGTCATT 57.752 29.630 23.02 0.00 35.20 2.57
3212 4090 7.382218 GCTGTTAGTTTGCAAAAACATAGTCAT 59.618 33.333 23.02 0.00 35.20 3.06
3223 4101 3.876274 TGGTTGCTGTTAGTTTGCAAA 57.124 38.095 8.05 8.05 46.22 3.68
3234 4112 2.957474 AGTTGGGTATTTGGTTGCTGT 58.043 42.857 0.00 0.00 0.00 4.40
3246 4124 4.835284 TGCAGTCATATCAAGTTGGGTA 57.165 40.909 2.34 0.00 0.00 3.69
3259 4137 3.022607 GCAAAAAGAGCTTGCAGTCAT 57.977 42.857 2.44 0.00 46.78 3.06
3260 4138 2.497107 GCAAAAAGAGCTTGCAGTCA 57.503 45.000 2.44 0.00 46.78 3.41
3291 4169 6.516718 ACAATATTCTCGTACTCCATGAAGG 58.483 40.000 0.00 0.00 39.47 3.46
3322 4200 2.565834 GTCTTCACTAAGGGGCAGTACA 59.434 50.000 0.00 0.00 33.22 2.90
3323 4201 2.416972 CGTCTTCACTAAGGGGCAGTAC 60.417 54.545 0.00 0.00 33.22 2.73
3324 4202 1.822990 CGTCTTCACTAAGGGGCAGTA 59.177 52.381 0.00 0.00 33.22 2.74
3325 4203 0.608640 CGTCTTCACTAAGGGGCAGT 59.391 55.000 0.00 0.00 33.22 4.40
3326 4204 0.895530 TCGTCTTCACTAAGGGGCAG 59.104 55.000 0.00 0.00 33.22 4.85
3327 4205 0.895530 CTCGTCTTCACTAAGGGGCA 59.104 55.000 0.00 0.00 33.22 5.36
3329 4207 1.134965 CAGCTCGTCTTCACTAAGGGG 60.135 57.143 0.00 0.00 33.22 4.79
3330 4208 1.134965 CCAGCTCGTCTTCACTAAGGG 60.135 57.143 0.00 0.00 33.22 3.95
3331 4209 1.546476 ACCAGCTCGTCTTCACTAAGG 59.454 52.381 0.00 0.00 33.22 2.69
3336 4217 1.997669 CCTTACCAGCTCGTCTTCAC 58.002 55.000 0.00 0.00 0.00 3.18
3342 4223 0.037232 GAACAGCCTTACCAGCTCGT 60.037 55.000 0.00 0.00 38.95 4.18
3346 4227 1.362406 GCTCGAACAGCCTTACCAGC 61.362 60.000 0.00 0.00 43.17 4.85
3387 4268 0.108138 GTGAAGGTCTGTGCGGCTAT 60.108 55.000 0.00 0.00 0.00 2.97
3388 4269 1.292223 GTGAAGGTCTGTGCGGCTA 59.708 57.895 0.00 0.00 0.00 3.93
3391 4272 1.284982 CTTCGTGAAGGTCTGTGCGG 61.285 60.000 1.57 0.00 34.87 5.69
3398 4279 2.186076 CAGCGTATCTTCGTGAAGGTC 58.814 52.381 9.58 1.00 38.88 3.85
3407 4288 3.932710 TCAATGTGAACCAGCGTATCTTC 59.067 43.478 0.00 0.00 0.00 2.87
3415 4296 1.131126 CGGTGATCAATGTGAACCAGC 59.869 52.381 0.00 2.87 28.85 4.85
3428 4309 0.738975 TCAGATCGGTCACGGTGATC 59.261 55.000 14.78 13.03 41.39 2.92
3435 4316 1.667724 CAGGCAATTCAGATCGGTCAC 59.332 52.381 0.00 0.00 0.00 3.67
3442 4323 5.651139 GCCACATATATCAGGCAATTCAGAT 59.349 40.000 16.48 0.00 46.26 2.90
3443 4324 5.005740 GCCACATATATCAGGCAATTCAGA 58.994 41.667 16.48 0.00 46.26 3.27
3452 4333 0.253044 CGGGGGCCACATATATCAGG 59.747 60.000 7.65 0.00 0.00 3.86
3481 4362 5.598416 ACTCGGTGTGATAAATCTGATCA 57.402 39.130 0.00 0.00 0.00 2.92
3485 4366 4.568359 CCTGAACTCGGTGTGATAAATCTG 59.432 45.833 0.00 0.00 0.00 2.90
3488 4369 3.270877 GCCTGAACTCGGTGTGATAAAT 58.729 45.455 0.00 0.00 0.00 1.40
3489 4370 2.037902 TGCCTGAACTCGGTGTGATAAA 59.962 45.455 0.00 0.00 0.00 1.40
3497 4378 4.021925 GCCCTGCCTGAACTCGGT 62.022 66.667 0.00 0.00 0.00 4.69
3499 4380 2.110967 CATGCCCTGCCTGAACTCG 61.111 63.158 0.00 0.00 0.00 4.18
3500 4381 2.413142 GCATGCCCTGCCTGAACTC 61.413 63.158 6.36 0.00 45.66 3.01
3518 4399 8.336873 TCCAAGATTCTATATTGCCACACTTGG 61.337 40.741 0.54 0.54 46.50 3.61
3539 4420 7.118390 GTCGGGTAATCATGATAATCTTCCAAG 59.882 40.741 9.04 0.00 0.00 3.61
3540 4421 6.934645 GTCGGGTAATCATGATAATCTTCCAA 59.065 38.462 9.04 0.00 0.00 3.53
3542 4423 6.702329 AGTCGGGTAATCATGATAATCTTCC 58.298 40.000 9.04 0.43 0.00 3.46
3546 4427 5.122396 GGCAAGTCGGGTAATCATGATAATC 59.878 44.000 9.04 2.62 0.00 1.75
3547 4428 5.003804 GGCAAGTCGGGTAATCATGATAAT 58.996 41.667 9.04 0.00 0.00 1.28
3548 4429 4.141597 TGGCAAGTCGGGTAATCATGATAA 60.142 41.667 9.04 0.00 0.00 1.75
3550 4431 2.172505 TGGCAAGTCGGGTAATCATGAT 59.827 45.455 1.18 1.18 0.00 2.45
3551 4432 1.557371 TGGCAAGTCGGGTAATCATGA 59.443 47.619 0.00 0.00 0.00 3.07
3589 4471 1.068588 GGGTTGTTGGTTGCCTTCTTC 59.931 52.381 0.00 0.00 0.00 2.87
3602 4484 1.066143 CGCTGGAGTAGATGGGTTGTT 60.066 52.381 0.00 0.00 0.00 2.83
3621 4503 0.456221 ACATGAAGCCGTCTCTACCG 59.544 55.000 0.00 0.00 0.00 4.02
3622 4504 1.202428 GGACATGAAGCCGTCTCTACC 60.202 57.143 0.00 0.00 32.57 3.18
3676 4559 0.607217 TACGGTCTTGGCAGTCGAGA 60.607 55.000 7.59 0.00 33.61 4.04
3677 4560 0.179161 CTACGGTCTTGGCAGTCGAG 60.179 60.000 7.59 0.00 0.00 4.04
3678 4561 1.880894 CTACGGTCTTGGCAGTCGA 59.119 57.895 7.59 0.00 0.00 4.20
3679 4562 1.805945 GCTACGGTCTTGGCAGTCG 60.806 63.158 0.00 0.00 0.00 4.18
3680 4563 1.448013 GGCTACGGTCTTGGCAGTC 60.448 63.158 0.00 0.00 0.00 3.51
3681 4564 1.889530 GAGGCTACGGTCTTGGCAGT 61.890 60.000 0.00 0.00 0.00 4.40
3682 4565 1.153549 GAGGCTACGGTCTTGGCAG 60.154 63.158 0.00 0.00 0.00 4.85
3684 4567 2.187163 GGAGGCTACGGTCTTGGC 59.813 66.667 0.00 0.00 0.00 4.52
3693 4595 0.253044 TGCTGGAATGTGGAGGCTAC 59.747 55.000 0.00 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.