Multiple sequence alignment - TraesCS3D01G322900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G322900 chr3D 100.000 6191 0 0 1 6191 435686298 435680108 0.000000e+00 11433.0
1 TraesCS3D01G322900 chr3A 94.680 5752 179 56 187 5880 574466611 574460929 0.000000e+00 8809.0
2 TraesCS3D01G322900 chr3B 94.222 3565 141 23 1943 5490 571765893 571762377 0.000000e+00 5382.0
3 TraesCS3D01G322900 chr3B 90.926 1631 63 29 344 1942 571767516 571765939 0.000000e+00 2113.0
4 TraesCS3D01G322900 chr3B 91.453 234 13 3 5642 5875 571761994 571761768 1.300000e-81 315.0
5 TraesCS3D01G322900 chr3B 86.813 273 27 6 5914 6183 571761780 571761514 4.690000e-76 296.0
6 TraesCS3D01G322900 chr3B 93.264 193 12 1 1 193 377115214 377115405 3.650000e-72 283.0
7 TraesCS3D01G322900 chr3B 87.712 236 8 8 5514 5747 571762209 571761993 7.960000e-64 255.0
8 TraesCS3D01G322900 chr2A 97.682 302 6 1 3980 4281 443757967 443757667 9.200000e-143 518.0
9 TraesCS3D01G322900 chr6A 97.351 302 8 0 3980 4281 149041865 149041564 1.190000e-141 514.0
10 TraesCS3D01G322900 chr6A 96.875 192 6 0 4090 4281 149035704 149035895 7.740000e-84 322.0
11 TraesCS3D01G322900 chr7A 92.718 206 13 2 1 204 671487672 671487467 4.690000e-76 296.0
12 TraesCS3D01G322900 chr7A 90.385 208 16 3 1 204 34052434 34052641 2.840000e-68 270.0
13 TraesCS3D01G322900 chr4D 93.434 198 12 1 1 198 439770565 439770761 6.070000e-75 292.0
14 TraesCS3D01G322900 chr6D 91.626 203 16 1 1 203 327021963 327022164 4.730000e-71 279.0
15 TraesCS3D01G322900 chr6D 92.000 200 13 3 1 199 3744154 3743957 1.700000e-70 278.0
16 TraesCS3D01G322900 chr5D 91.133 203 17 1 1 202 451067335 451067133 2.200000e-69 274.0
17 TraesCS3D01G322900 chr5A 90.338 207 18 2 1 205 320172030 320171824 2.840000e-68 270.0
18 TraesCS3D01G322900 chr2D 90.686 204 18 1 1 204 147458868 147459070 2.840000e-68 270.0
19 TraesCS3D01G322900 chr7B 100.000 136 0 0 2605 2740 162843418 162843283 1.030000e-62 252.0
20 TraesCS3D01G322900 chr7B 100.000 84 0 0 2441 2524 162843499 162843416 8.310000e-34 156.0
21 TraesCS3D01G322900 chr7B 100.000 76 0 0 2272 2347 162843572 162843497 2.330000e-29 141.0
22 TraesCS3D01G322900 chr7B 98.182 55 1 0 3236 3290 162842960 162842906 5.110000e-16 97.1
23 TraesCS3D01G322900 chr7B 100.000 50 0 0 3039 3088 162843282 162843233 6.610000e-15 93.5
24 TraesCS3D01G322900 chr1A 86.139 101 12 1 6068 6166 249022416 249022516 2.360000e-19 108.0
25 TraesCS3D01G322900 chr1B 86.076 79 11 0 6062 6140 278390872 278390950 1.110000e-12 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G322900 chr3D 435680108 435686298 6190 True 11433.0 11433 100.0000 1 6191 1 chr3D.!!$R1 6190
1 TraesCS3D01G322900 chr3A 574460929 574466611 5682 True 8809.0 8809 94.6800 187 5880 1 chr3A.!!$R1 5693
2 TraesCS3D01G322900 chr3B 571761514 571767516 6002 True 1672.2 5382 90.2252 344 6183 5 chr3B.!!$R1 5839

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
185 186 0.108898 GTTGCAACGCATGGGCATTA 60.109 50.000 14.90 0.0 38.76 1.90 F
1583 1642 1.009829 CGCGGCTGCTCTAATTTCTT 58.990 50.000 17.03 0.0 39.65 2.52 F
2556 2663 1.135972 CCGATTTCTTTGGCACGACAG 60.136 52.381 0.00 0.0 0.00 3.51 F
3385 3500 2.787473 ACCTCCGATGCTCATGAAAA 57.213 45.000 0.00 0.0 0.00 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2114 2221 0.035152 TGCAACGCCTCATGGAATCT 60.035 50.000 0.0 0.0 34.57 2.40 R
2866 2973 3.617263 GTGCCGTTTATCTCGAAGACAAT 59.383 43.478 0.0 0.0 0.00 2.71 R
3605 3720 0.251564 AATGAACGGGCAATGTGGGA 60.252 50.000 0.0 0.0 0.00 4.37 R
5314 5437 0.798389 GTTCCTCGTAACGGGCGTAC 60.798 60.000 0.0 0.0 0.00 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 9.722184 AATTTACTTACCTTCTGAACTAGTTCC 57.278 33.333 28.43 13.89 38.77 3.62
30 31 7.844493 TTACTTACCTTCTGAACTAGTTCCA 57.156 36.000 28.43 17.14 38.77 3.53
31 32 6.099159 ACTTACCTTCTGAACTAGTTCCAC 57.901 41.667 28.43 9.23 38.77 4.02
32 33 5.839606 ACTTACCTTCTGAACTAGTTCCACT 59.160 40.000 28.43 10.65 38.77 4.00
33 34 6.326843 ACTTACCTTCTGAACTAGTTCCACTT 59.673 38.462 28.43 13.04 38.77 3.16
34 35 5.632034 ACCTTCTGAACTAGTTCCACTTT 57.368 39.130 28.43 9.43 38.77 2.66
35 36 6.742559 ACCTTCTGAACTAGTTCCACTTTA 57.257 37.500 28.43 11.23 38.77 1.85
36 37 7.133133 ACCTTCTGAACTAGTTCCACTTTAA 57.867 36.000 28.43 14.19 38.77 1.52
37 38 7.746703 ACCTTCTGAACTAGTTCCACTTTAAT 58.253 34.615 28.43 8.43 38.77 1.40
38 39 8.218488 ACCTTCTGAACTAGTTCCACTTTAATT 58.782 33.333 28.43 6.10 38.77 1.40
39 40 9.067986 CCTTCTGAACTAGTTCCACTTTAATTT 57.932 33.333 28.43 0.00 38.77 1.82
45 46 9.608617 GAACTAGTTCCACTTTAATTTACTTGC 57.391 33.333 22.74 0.00 33.64 4.01
46 47 8.107399 ACTAGTTCCACTTTAATTTACTTGCC 57.893 34.615 0.00 0.00 0.00 4.52
47 48 6.969993 AGTTCCACTTTAATTTACTTGCCA 57.030 33.333 0.00 0.00 0.00 4.92
48 49 7.354751 AGTTCCACTTTAATTTACTTGCCAA 57.645 32.000 0.00 0.00 0.00 4.52
49 50 7.787028 AGTTCCACTTTAATTTACTTGCCAAA 58.213 30.769 0.00 0.00 0.00 3.28
50 51 7.709182 AGTTCCACTTTAATTTACTTGCCAAAC 59.291 33.333 0.00 0.00 0.00 2.93
51 52 7.354751 TCCACTTTAATTTACTTGCCAAACT 57.645 32.000 0.00 0.00 0.00 2.66
52 53 7.787028 TCCACTTTAATTTACTTGCCAAACTT 58.213 30.769 0.00 0.00 0.00 2.66
53 54 7.923878 TCCACTTTAATTTACTTGCCAAACTTC 59.076 33.333 0.00 0.00 0.00 3.01
54 55 7.926018 CCACTTTAATTTACTTGCCAAACTTCT 59.074 33.333 0.00 0.00 0.00 2.85
55 56 9.959749 CACTTTAATTTACTTGCCAAACTTCTA 57.040 29.630 0.00 0.00 0.00 2.10
90 91 7.921786 AAGATAATTCACGGTCAGAATTTGA 57.078 32.000 10.52 0.00 41.54 2.69
91 92 8.511604 AAGATAATTCACGGTCAGAATTTGAT 57.488 30.769 10.52 1.97 41.54 2.57
92 93 9.613428 AAGATAATTCACGGTCAGAATTTGATA 57.387 29.630 10.52 0.00 41.54 2.15
93 94 9.613428 AGATAATTCACGGTCAGAATTTGATAA 57.387 29.630 10.52 0.00 41.54 1.75
96 97 6.869315 TTCACGGTCAGAATTTGATAAACA 57.131 33.333 0.00 0.00 38.29 2.83
97 98 7.447374 TTCACGGTCAGAATTTGATAAACAT 57.553 32.000 0.00 0.00 38.29 2.71
98 99 7.447374 TCACGGTCAGAATTTGATAAACATT 57.553 32.000 0.00 0.00 38.29 2.71
99 100 7.881142 TCACGGTCAGAATTTGATAAACATTT 58.119 30.769 0.00 0.00 38.29 2.32
100 101 9.004717 TCACGGTCAGAATTTGATAAACATTTA 57.995 29.630 0.00 0.00 38.29 1.40
101 102 9.787532 CACGGTCAGAATTTGATAAACATTTAT 57.212 29.630 0.00 0.00 38.29 1.40
126 127 7.835634 TTACACAATCGCAGTATTATTGACA 57.164 32.000 0.00 0.00 35.18 3.58
127 128 6.349973 ACACAATCGCAGTATTATTGACAG 57.650 37.500 0.00 0.00 35.18 3.51
128 129 5.294306 ACACAATCGCAGTATTATTGACAGG 59.706 40.000 0.00 0.00 35.18 4.00
129 130 5.294306 CACAATCGCAGTATTATTGACAGGT 59.706 40.000 0.00 0.00 35.18 4.00
130 131 6.478673 CACAATCGCAGTATTATTGACAGGTA 59.521 38.462 0.00 0.00 35.18 3.08
131 132 7.011016 CACAATCGCAGTATTATTGACAGGTAA 59.989 37.037 0.00 0.00 35.18 2.85
132 133 7.551262 ACAATCGCAGTATTATTGACAGGTAAA 59.449 33.333 0.00 0.00 35.18 2.01
133 134 8.559536 CAATCGCAGTATTATTGACAGGTAAAT 58.440 33.333 0.00 0.00 33.38 1.40
134 135 7.709269 TCGCAGTATTATTGACAGGTAAATC 57.291 36.000 0.00 0.00 0.00 2.17
135 136 7.269316 TCGCAGTATTATTGACAGGTAAATCA 58.731 34.615 0.00 0.00 0.00 2.57
136 137 7.931407 TCGCAGTATTATTGACAGGTAAATCAT 59.069 33.333 0.00 0.00 0.00 2.45
137 138 9.203421 CGCAGTATTATTGACAGGTAAATCATA 57.797 33.333 0.00 0.00 0.00 2.15
146 147 9.832445 ATTGACAGGTAAATCATAATCTAACGT 57.168 29.630 0.00 0.00 0.00 3.99
148 149 9.740239 TGACAGGTAAATCATAATCTAACGTAC 57.260 33.333 0.00 0.00 0.00 3.67
149 150 9.962783 GACAGGTAAATCATAATCTAACGTACT 57.037 33.333 0.00 0.00 0.00 2.73
170 171 9.017669 CGTACTAGAATATTTATATCCCGTTGC 57.982 37.037 0.00 0.00 0.00 4.17
171 172 9.865321 GTACTAGAATATTTATATCCCGTTGCA 57.135 33.333 0.00 0.00 0.00 4.08
173 174 9.216117 ACTAGAATATTTATATCCCGTTGCAAC 57.784 33.333 19.89 19.89 0.00 4.17
182 183 4.340019 CGTTGCAACGCATGGGCA 62.340 61.111 35.89 0.00 46.06 5.36
183 184 2.262292 GTTGCAACGCATGGGCAT 59.738 55.556 14.90 0.00 38.76 4.40
184 185 1.374505 GTTGCAACGCATGGGCATT 60.375 52.632 14.90 0.00 38.76 3.56
185 186 0.108898 GTTGCAACGCATGGGCATTA 60.109 50.000 14.90 0.00 38.76 1.90
377 378 2.543653 GGACTTGCATGTGTTGTCCAAC 60.544 50.000 10.37 3.21 44.59 3.77
430 442 5.336690 GGATGAGTTTTCTAGCATTGGCAAA 60.337 40.000 3.01 0.00 44.61 3.68
582 606 9.676861 AACTACCAATACCAAATCTAAACTACC 57.323 33.333 0.00 0.00 0.00 3.18
768 797 4.850680 CCTAAAGGGGCACATACACTTTA 58.149 43.478 0.00 0.00 33.79 1.85
896 933 2.260844 TCTCTGCCCACACTTCTTTG 57.739 50.000 0.00 0.00 0.00 2.77
897 934 1.768275 TCTCTGCCCACACTTCTTTGA 59.232 47.619 0.00 0.00 0.00 2.69
1094 1141 4.704833 CCCGGTCACCAGCCACAG 62.705 72.222 0.00 0.00 0.00 3.66
1453 1506 1.970917 GCATGCTTTCTCACCGTCCG 61.971 60.000 11.37 0.00 0.00 4.79
1506 1562 3.124921 CGAATGTGCGTCCACCCC 61.125 66.667 0.00 0.00 41.35 4.95
1509 1565 1.586154 GAATGTGCGTCCACCCCAAG 61.586 60.000 0.00 0.00 41.35 3.61
1583 1642 1.009829 CGCGGCTGCTCTAATTTCTT 58.990 50.000 17.03 0.00 39.65 2.52
1587 1646 2.673368 CGGCTGCTCTAATTTCTTCGTT 59.327 45.455 0.00 0.00 0.00 3.85
1900 1961 7.163441 TCAAGGTAACCCTGTTAATCTTGTAC 58.837 38.462 19.33 0.00 41.56 2.90
1933 1995 4.279169 TGTTTTCTTCCTTCAGAATGGCAG 59.721 41.667 0.00 0.00 36.16 4.85
1942 2004 1.973515 TCAGAATGGCAGGCGATATCT 59.026 47.619 0.34 0.00 36.16 1.98
1943 2005 2.074576 CAGAATGGCAGGCGATATCTG 58.925 52.381 0.34 11.04 35.49 2.90
1944 2006 1.696336 AGAATGGCAGGCGATATCTGT 59.304 47.619 0.34 0.00 34.89 3.41
1946 2008 3.324846 AGAATGGCAGGCGATATCTGTAA 59.675 43.478 0.34 0.00 34.89 2.41
2352 2459 3.287222 GTTGCATGAAGGGCAGGTATAA 58.713 45.455 0.00 0.00 43.05 0.98
2553 2660 1.533731 GAACCGATTTCTTTGGCACGA 59.466 47.619 0.00 0.00 30.99 4.35
2556 2663 1.135972 CCGATTTCTTTGGCACGACAG 60.136 52.381 0.00 0.00 0.00 3.51
2861 2968 5.467063 AGACCTTTCAAAGCTAGAAGTTTCG 59.533 40.000 0.00 0.00 0.00 3.46
2866 2973 5.196341 TCAAAGCTAGAAGTTTCGTCTGA 57.804 39.130 0.00 0.00 0.00 3.27
3146 3253 4.036518 AGGAGGAAGTAAGCATCAGATGT 58.963 43.478 12.18 0.00 0.00 3.06
3345 3452 5.279056 GCGCTATTCTCTTAGGGTGAGTATT 60.279 44.000 0.00 0.00 35.27 1.89
3346 3453 6.739008 GCGCTATTCTCTTAGGGTGAGTATTT 60.739 42.308 0.00 0.00 35.27 1.40
3375 3482 3.679980 CGGCTAATCATTTACCTCCGATG 59.320 47.826 0.00 0.00 38.02 3.84
3385 3500 2.787473 ACCTCCGATGCTCATGAAAA 57.213 45.000 0.00 0.00 0.00 2.29
3605 3720 5.890424 TTTTCCAAGTTTCACGTCTTTCT 57.110 34.783 0.00 0.00 0.00 2.52
3756 3871 6.594159 AGGTTGTTACAAGTATCGGATTCTTG 59.406 38.462 26.18 26.18 41.61 3.02
3845 3960 2.160417 GCCTCAAATTCTCTCCGTGTTG 59.840 50.000 0.00 0.00 0.00 3.33
3910 4025 6.006449 ACAAGCTCAACTTAATCACATCCTT 58.994 36.000 0.00 0.00 36.04 3.36
4255 4370 9.162764 TCTGTAATTAGTATTTCCACTTGCTTC 57.837 33.333 0.00 0.00 0.00 3.86
4394 4509 3.371063 GTCGGTGCCGGTCTCTCA 61.371 66.667 10.94 0.00 40.25 3.27
4400 4515 2.435059 GCCGGTCTCTCAGTTGCC 60.435 66.667 1.90 0.00 0.00 4.52
4448 4563 0.597637 CCGCGAGTGCTATTCCGATT 60.598 55.000 8.23 0.00 39.65 3.34
4644 4759 4.822896 AGGTCGATAATCAGGTCAGTCTAC 59.177 45.833 0.00 0.00 0.00 2.59
4649 4764 5.007823 CGATAATCAGGTCAGTCTACGTTCT 59.992 44.000 0.00 0.00 0.00 3.01
4660 4775 6.469595 GTCAGTCTACGTTCTATTGCTAGTTG 59.530 42.308 0.00 0.00 0.00 3.16
4804 4927 0.244450 ATGCCACAGATTTGCCAACG 59.756 50.000 0.00 0.00 0.00 4.10
5180 5303 2.574018 CCACTCCTGTGAGGACGCA 61.574 63.158 0.00 0.00 46.55 5.24
5314 5437 1.383803 AAGGGCTGAGCTAGGGGAG 60.384 63.158 3.72 0.00 0.00 4.30
5419 5542 5.412286 GGTTTTGTAATGTGTACCCGTGTAT 59.588 40.000 0.00 0.00 0.00 2.29
5498 5626 1.827969 CACCCTCTAGAGTGGTCTTGG 59.172 57.143 22.84 15.57 33.84 3.61
5504 5632 4.080243 CCTCTAGAGTGGTCTTGGACTCTA 60.080 50.000 18.42 0.00 45.73 2.43
5506 5634 5.888901 TCTAGAGTGGTCTTGGACTCTAAA 58.111 41.667 9.51 0.00 46.34 1.85
5507 5635 6.312529 TCTAGAGTGGTCTTGGACTCTAAAA 58.687 40.000 9.51 0.53 46.34 1.52
5508 5636 5.216614 AGAGTGGTCTTGGACTCTAAAAC 57.783 43.478 0.00 0.00 45.73 2.43
5509 5637 4.902448 AGAGTGGTCTTGGACTCTAAAACT 59.098 41.667 0.00 0.00 45.73 2.66
5510 5638 6.075984 AGAGTGGTCTTGGACTCTAAAACTA 58.924 40.000 0.00 0.00 45.73 2.24
5511 5639 6.726764 AGAGTGGTCTTGGACTCTAAAACTAT 59.273 38.462 0.00 0.00 45.73 2.12
5512 5640 7.235812 AGAGTGGTCTTGGACTCTAAAACTATT 59.764 37.037 0.00 0.00 45.73 1.73
5552 5819 7.811653 GCCCTTTGCTATTTCAGATTAGTATC 58.188 38.462 0.00 0.00 36.87 2.24
5553 5820 7.663493 GCCCTTTGCTATTTCAGATTAGTATCT 59.337 37.037 0.00 0.00 38.13 1.98
5773 6136 1.818674 CAAACCATGGCACCCTACTTC 59.181 52.381 13.04 0.00 0.00 3.01
5774 6137 0.331616 AACCATGGCACCCTACTTCC 59.668 55.000 13.04 0.00 0.00 3.46
5790 6153 4.537135 ACTTCCATCTTTAGCTCGAACA 57.463 40.909 0.00 0.00 0.00 3.18
5823 6186 3.306088 CCTCTTCTGTTCCTTACTCGCAA 60.306 47.826 0.00 0.00 0.00 4.85
5832 6195 0.251916 CTTACTCGCAATGTCCCCCA 59.748 55.000 0.00 0.00 0.00 4.96
5833 6196 0.035820 TTACTCGCAATGTCCCCCAC 60.036 55.000 0.00 0.00 0.00 4.61
5860 6223 1.468520 CGCCTGGAATGTGATTTCGTT 59.531 47.619 0.00 0.00 0.00 3.85
5877 6240 0.983905 GTTCCCTCCCCTTCTCTCCC 60.984 65.000 0.00 0.00 0.00 4.30
5878 6241 1.162951 TTCCCTCCCCTTCTCTCCCT 61.163 60.000 0.00 0.00 0.00 4.20
5879 6242 1.162951 TCCCTCCCCTTCTCTCCCTT 61.163 60.000 0.00 0.00 0.00 3.95
5880 6243 0.985490 CCCTCCCCTTCTCTCCCTTG 60.985 65.000 0.00 0.00 0.00 3.61
5881 6244 0.985490 CCTCCCCTTCTCTCCCTTGG 60.985 65.000 0.00 0.00 0.00 3.61
5882 6245 0.252927 CTCCCCTTCTCTCCCTTGGT 60.253 60.000 0.00 0.00 0.00 3.67
5883 6246 0.196118 TCCCCTTCTCTCCCTTGGTT 59.804 55.000 0.00 0.00 0.00 3.67
5884 6247 1.076438 CCCCTTCTCTCCCTTGGTTT 58.924 55.000 0.00 0.00 0.00 3.27
5885 6248 1.272147 CCCCTTCTCTCCCTTGGTTTG 60.272 57.143 0.00 0.00 0.00 2.93
5886 6249 1.272147 CCCTTCTCTCCCTTGGTTTGG 60.272 57.143 0.00 0.00 0.00 3.28
5887 6250 1.705186 CCTTCTCTCCCTTGGTTTGGA 59.295 52.381 0.00 0.00 0.00 3.53
5888 6251 2.108250 CCTTCTCTCCCTTGGTTTGGAA 59.892 50.000 0.00 0.00 0.00 3.53
5889 6252 3.245407 CCTTCTCTCCCTTGGTTTGGAAT 60.245 47.826 0.00 0.00 0.00 3.01
5890 6253 4.018415 CCTTCTCTCCCTTGGTTTGGAATA 60.018 45.833 0.00 0.00 0.00 1.75
5891 6254 5.516591 CCTTCTCTCCCTTGGTTTGGAATAA 60.517 44.000 0.00 0.00 0.00 1.40
5892 6255 5.796502 TCTCTCCCTTGGTTTGGAATAAT 57.203 39.130 0.00 0.00 0.00 1.28
5893 6256 5.755849 TCTCTCCCTTGGTTTGGAATAATC 58.244 41.667 0.00 0.00 0.00 1.75
5894 6257 4.867086 TCTCCCTTGGTTTGGAATAATCC 58.133 43.478 0.00 0.00 46.76 3.01
5911 6274 9.822185 GGAATAATCCAAACTAAATCAATGCTT 57.178 29.630 0.00 0.00 45.79 3.91
5914 6277 9.822185 ATAATCCAAACTAAATCAATGCTTTCC 57.178 29.630 0.00 0.00 0.00 3.13
5915 6278 6.916360 TCCAAACTAAATCAATGCTTTCCT 57.084 33.333 0.00 0.00 0.00 3.36
5916 6279 7.301868 TCCAAACTAAATCAATGCTTTCCTT 57.698 32.000 0.00 0.00 0.00 3.36
5917 6280 7.734942 TCCAAACTAAATCAATGCTTTCCTTT 58.265 30.769 0.00 0.00 0.00 3.11
5918 6281 7.872483 TCCAAACTAAATCAATGCTTTCCTTTC 59.128 33.333 0.00 0.00 0.00 2.62
5919 6282 7.118245 CCAAACTAAATCAATGCTTTCCTTTCC 59.882 37.037 0.00 0.00 0.00 3.13
5920 6283 7.544804 AACTAAATCAATGCTTTCCTTTCCT 57.455 32.000 0.00 0.00 0.00 3.36
5921 6284 7.163001 ACTAAATCAATGCTTTCCTTTCCTC 57.837 36.000 0.00 0.00 0.00 3.71
5922 6285 6.950619 ACTAAATCAATGCTTTCCTTTCCTCT 59.049 34.615 0.00 0.00 0.00 3.69
5923 6286 5.911378 AATCAATGCTTTCCTTTCCTCTC 57.089 39.130 0.00 0.00 0.00 3.20
5924 6287 4.647564 TCAATGCTTTCCTTTCCTCTCT 57.352 40.909 0.00 0.00 0.00 3.10
5931 6294 7.259088 TGCTTTCCTTTCCTCTCTATTAACT 57.741 36.000 0.00 0.00 0.00 2.24
5936 6299 9.892130 TTTCCTTTCCTCTCTATTAACTCAATC 57.108 33.333 0.00 0.00 0.00 2.67
5958 6321 9.695526 CAATCAAATCTTATGAAAACCAACTCA 57.304 29.630 0.00 0.00 0.00 3.41
5963 6326 8.970691 AATCTTATGAAAACCAACTCAAATCG 57.029 30.769 0.00 0.00 0.00 3.34
6022 6385 3.503748 CGAAACTTTCCTTGCATTCTCCT 59.496 43.478 0.00 0.00 0.00 3.69
6023 6386 4.695455 CGAAACTTTCCTTGCATTCTCCTA 59.305 41.667 0.00 0.00 0.00 2.94
6024 6387 5.355350 CGAAACTTTCCTTGCATTCTCCTAT 59.645 40.000 0.00 0.00 0.00 2.57
6041 6404 7.219601 TCTCCTATCCATACCCAAATCAAAA 57.780 36.000 0.00 0.00 0.00 2.44
6051 6414 8.317679 CCATACCCAAATCAAAATAAACCTCAA 58.682 33.333 0.00 0.00 0.00 3.02
6055 6418 8.929487 ACCCAAATCAAAATAAACCTCAACTAA 58.071 29.630 0.00 0.00 0.00 2.24
6056 6419 9.771534 CCCAAATCAAAATAAACCTCAACTAAA 57.228 29.630 0.00 0.00 0.00 1.85
6077 6440 8.947115 ACTAAACTATATCAACACTTTCCTTGC 58.053 33.333 0.00 0.00 0.00 4.01
6084 6447 3.132111 TCAACACTTTCCTTGCTTTTCCC 59.868 43.478 0.00 0.00 0.00 3.97
6086 6449 4.178956 ACACTTTCCTTGCTTTTCCCTA 57.821 40.909 0.00 0.00 0.00 3.53
6088 6451 3.255888 CACTTTCCTTGCTTTTCCCTACC 59.744 47.826 0.00 0.00 0.00 3.18
6103 6466 5.742562 TCCCTACCCATAACCAAATCAAT 57.257 39.130 0.00 0.00 0.00 2.57
6115 6478 9.090692 CATAACCAAATCAATTCAAATCTCACC 57.909 33.333 0.00 0.00 0.00 4.02
6123 6486 5.243730 TCAATTCAAATCTCACCCAAACCTC 59.756 40.000 0.00 0.00 0.00 3.85
6127 6490 2.586648 ATCTCACCCAAACCTCAACC 57.413 50.000 0.00 0.00 0.00 3.77
6132 6495 2.962421 TCACCCAAACCTCAACCAAATC 59.038 45.455 0.00 0.00 0.00 2.17
6166 6529 2.723273 CCTTCCCACCCATACTCAAAC 58.277 52.381 0.00 0.00 0.00 2.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 9.722184 GGAACTAGTTCAGAAGGTAAGTAAATT 57.278 33.333 31.30 0.00 41.20 1.82
4 5 8.877195 TGGAACTAGTTCAGAAGGTAAGTAAAT 58.123 33.333 31.30 0.00 41.20 1.40
5 6 8.146412 GTGGAACTAGTTCAGAAGGTAAGTAAA 58.854 37.037 31.30 2.36 41.20 2.01
6 7 7.664758 GTGGAACTAGTTCAGAAGGTAAGTAA 58.335 38.462 31.30 3.45 41.20 2.24
7 8 7.224522 GTGGAACTAGTTCAGAAGGTAAGTA 57.775 40.000 31.30 5.29 41.20 2.24
8 9 6.099159 GTGGAACTAGTTCAGAAGGTAAGT 57.901 41.667 31.30 0.00 41.20 2.24
25 26 7.709182 AGTTTGGCAAGTAAATTAAAGTGGAAC 59.291 33.333 0.00 0.00 0.00 3.62
26 27 7.787028 AGTTTGGCAAGTAAATTAAAGTGGAA 58.213 30.769 0.00 0.00 0.00 3.53
27 28 7.354751 AGTTTGGCAAGTAAATTAAAGTGGA 57.645 32.000 0.00 0.00 0.00 4.02
28 29 7.926018 AGAAGTTTGGCAAGTAAATTAAAGTGG 59.074 33.333 0.00 0.00 0.00 4.00
29 30 8.871686 AGAAGTTTGGCAAGTAAATTAAAGTG 57.128 30.769 0.00 0.00 0.00 3.16
64 65 9.613428 TCAAATTCTGACCGTGAATTATCTTAT 57.387 29.630 0.00 0.00 41.54 1.73
65 66 9.613428 ATCAAATTCTGACCGTGAATTATCTTA 57.387 29.630 0.00 0.00 41.54 2.10
66 67 7.921786 TCAAATTCTGACCGTGAATTATCTT 57.078 32.000 0.00 0.00 41.54 2.40
67 68 9.613428 TTATCAAATTCTGACCGTGAATTATCT 57.387 29.630 0.00 0.00 41.54 1.98
70 71 9.004717 TGTTTATCAAATTCTGACCGTGAATTA 57.995 29.630 0.00 0.00 41.54 1.40
71 72 7.881142 TGTTTATCAAATTCTGACCGTGAATT 58.119 30.769 0.00 0.00 43.44 2.17
72 73 7.447374 TGTTTATCAAATTCTGACCGTGAAT 57.553 32.000 0.00 0.00 36.69 2.57
73 74 6.869315 TGTTTATCAAATTCTGACCGTGAA 57.131 33.333 0.00 0.00 36.69 3.18
74 75 7.447374 AATGTTTATCAAATTCTGACCGTGA 57.553 32.000 0.00 0.00 36.69 4.35
75 76 9.787532 ATAAATGTTTATCAAATTCTGACCGTG 57.212 29.630 0.00 0.00 36.69 4.94
100 101 8.888716 TGTCAATAATACTGCGATTGTGTAAAT 58.111 29.630 0.00 0.00 33.27 1.40
101 102 8.257830 TGTCAATAATACTGCGATTGTGTAAA 57.742 30.769 0.00 0.00 33.27 2.01
102 103 7.011016 CCTGTCAATAATACTGCGATTGTGTAA 59.989 37.037 0.00 0.00 33.27 2.41
103 104 6.478673 CCTGTCAATAATACTGCGATTGTGTA 59.521 38.462 0.00 0.00 33.27 2.90
104 105 5.294306 CCTGTCAATAATACTGCGATTGTGT 59.706 40.000 0.00 0.00 33.27 3.72
105 106 5.294306 ACCTGTCAATAATACTGCGATTGTG 59.706 40.000 0.00 0.00 33.27 3.33
106 107 5.428253 ACCTGTCAATAATACTGCGATTGT 58.572 37.500 0.00 0.00 33.27 2.71
107 108 5.991328 ACCTGTCAATAATACTGCGATTG 57.009 39.130 0.00 0.00 32.85 2.67
108 109 8.677148 ATTTACCTGTCAATAATACTGCGATT 57.323 30.769 0.00 0.00 0.00 3.34
109 110 7.931407 TGATTTACCTGTCAATAATACTGCGAT 59.069 33.333 0.00 0.00 0.00 4.58
110 111 7.269316 TGATTTACCTGTCAATAATACTGCGA 58.731 34.615 0.00 0.00 0.00 5.10
111 112 7.477144 TGATTTACCTGTCAATAATACTGCG 57.523 36.000 0.00 0.00 0.00 5.18
120 121 9.832445 ACGTTAGATTATGATTTACCTGTCAAT 57.168 29.630 0.00 0.00 0.00 2.57
122 123 9.740239 GTACGTTAGATTATGATTTACCTGTCA 57.260 33.333 0.00 0.00 0.00 3.58
123 124 9.962783 AGTACGTTAGATTATGATTTACCTGTC 57.037 33.333 0.00 0.00 0.00 3.51
144 145 9.017669 GCAACGGGATATAAATATTCTAGTACG 57.982 37.037 0.00 0.00 0.00 3.67
145 146 9.865321 TGCAACGGGATATAAATATTCTAGTAC 57.135 33.333 0.00 0.00 0.00 2.73
147 148 9.216117 GTTGCAACGGGATATAAATATTCTAGT 57.784 33.333 14.90 0.00 0.00 2.57
166 167 0.108898 TAATGCCCATGCGTTGCAAC 60.109 50.000 19.89 19.89 46.06 4.17
167 168 0.822811 ATAATGCCCATGCGTTGCAA 59.177 45.000 0.00 0.00 46.06 4.08
168 169 0.822811 AATAATGCCCATGCGTTGCA 59.177 45.000 2.57 2.57 46.06 4.08
169 170 1.067516 AGAATAATGCCCATGCGTTGC 59.932 47.619 2.41 0.00 46.06 4.17
170 171 3.565482 ACTAGAATAATGCCCATGCGTTG 59.435 43.478 0.00 0.00 46.06 4.10
172 173 3.492102 ACTAGAATAATGCCCATGCGT 57.508 42.857 0.00 0.00 41.78 5.24
173 174 6.573434 TCTATACTAGAATAATGCCCATGCG 58.427 40.000 0.00 0.00 41.78 4.73
174 175 8.792830 TTTCTATACTAGAATAATGCCCATGC 57.207 34.615 0.00 0.00 43.72 4.06
278 279 7.015098 TCTGAACAGTCTCTCTCTCTCAATTTT 59.985 37.037 1.73 0.00 0.00 1.82
281 282 5.569355 TCTGAACAGTCTCTCTCTCTCAAT 58.431 41.667 1.73 0.00 0.00 2.57
284 285 6.597672 TGTTATCTGAACAGTCTCTCTCTCTC 59.402 42.308 1.73 0.00 0.00 3.20
285 286 6.480763 TGTTATCTGAACAGTCTCTCTCTCT 58.519 40.000 1.73 0.00 0.00 3.10
335 336 9.802039 AAGTCCACTCAATTAATTACCTTGTTA 57.198 29.630 0.00 0.00 0.00 2.41
397 409 5.104900 GCTAGAAAACTCATCCTCCCTGTAA 60.105 44.000 0.00 0.00 0.00 2.41
403 415 4.578105 CCAATGCTAGAAAACTCATCCTCC 59.422 45.833 0.00 0.00 0.00 4.30
408 420 5.726980 TTTGCCAATGCTAGAAAACTCAT 57.273 34.783 0.00 0.00 38.71 2.90
565 589 7.970102 AGACAACTGGTAGTTTAGATTTGGTA 58.030 34.615 0.00 0.00 36.03 3.25
582 606 4.223032 TCCCTAGCTTTTAGGAGACAACTG 59.777 45.833 2.33 0.00 36.85 3.16
765 794 6.489700 TGAAGCACCACAGATTCAATCTTAAA 59.510 34.615 0.00 0.00 37.58 1.52
768 797 4.401022 TGAAGCACCACAGATTCAATCTT 58.599 39.130 0.00 0.00 37.58 2.40
896 933 4.836125 TTCTCCACAGCAGAAAACAATC 57.164 40.909 0.00 0.00 0.00 2.67
897 934 5.796424 AATTCTCCACAGCAGAAAACAAT 57.204 34.783 0.00 0.00 33.57 2.71
1453 1506 0.962855 GAGGGAGGGCAAGCAAGAAC 60.963 60.000 0.00 0.00 0.00 3.01
1506 1562 1.419374 CGTTCGAGTGGAGGAACTTG 58.581 55.000 2.89 0.00 41.55 3.16
1509 1565 2.087009 CGCGTTCGAGTGGAGGAAC 61.087 63.158 0.00 0.00 39.26 3.62
1536 1592 3.364549 CTCACCTCCAAATGGCCATTTA 58.635 45.455 36.92 24.40 38.84 1.40
1574 1633 4.159377 TGGCAGCAAACGAAGAAATTAG 57.841 40.909 0.00 0.00 0.00 1.73
1583 1642 3.784701 TTAACTTTTGGCAGCAAACGA 57.215 38.095 0.00 0.00 0.00 3.85
1587 1646 6.709846 AGCAAAATATTAACTTTTGGCAGCAA 59.290 30.769 19.14 0.00 41.63 3.91
1900 1961 8.242053 TCTGAAGGAAGAAAACATAGTACTACG 58.758 37.037 4.31 0.00 0.00 3.51
1933 1995 5.533482 AGTGTCAGATTTACAGATATCGCC 58.467 41.667 0.00 0.00 0.00 5.54
1987 2094 6.324819 ACTCAATGTAATGCAAGATTTTCCG 58.675 36.000 0.00 0.00 0.00 4.30
2086 2193 1.106285 GCCTCCGCCATCATCTTTTT 58.894 50.000 0.00 0.00 0.00 1.94
2114 2221 0.035152 TGCAACGCCTCATGGAATCT 60.035 50.000 0.00 0.00 34.57 2.40
2217 2324 8.388656 AGAAGTTATATAGTTTTGGGGACAGA 57.611 34.615 0.00 0.00 44.54 3.41
2352 2459 6.486657 TGCACTAAAGCAAATAGAAGTGACTT 59.513 34.615 0.00 0.00 42.46 3.01
2553 2660 5.889853 ACCATCAGCATATTTTGATCACTGT 59.110 36.000 0.00 0.00 31.91 3.55
2556 2663 6.916387 CAGAACCATCAGCATATTTTGATCAC 59.084 38.462 0.00 0.00 31.91 3.06
2861 2968 5.230306 CCGTTTATCTCGAAGACAATCAGAC 59.770 44.000 0.00 0.00 0.00 3.51
2866 2973 3.617263 GTGCCGTTTATCTCGAAGACAAT 59.383 43.478 0.00 0.00 0.00 2.71
3345 3452 6.588204 AGGTAAATGATTAGCCGTGTGATAA 58.412 36.000 0.00 0.00 39.75 1.75
3346 3453 6.169557 AGGTAAATGATTAGCCGTGTGATA 57.830 37.500 0.00 0.00 39.75 2.15
3605 3720 0.251564 AATGAACGGGCAATGTGGGA 60.252 50.000 0.00 0.00 0.00 4.37
3756 3871 2.812011 ACTAATTGTTGGAGCACCGTTC 59.188 45.455 0.00 0.00 39.42 3.95
3845 3960 6.810182 CCCATTGATCATCTTGAAACAAAGTC 59.190 38.462 0.00 0.00 33.31 3.01
4255 4370 4.408921 TCAGGTGACTATGTAAATCCCTGG 59.591 45.833 0.00 0.00 40.21 4.45
4394 4509 2.612115 CCTCTCCAGGGGGCAACT 60.612 66.667 0.00 0.00 35.89 3.16
4448 4563 3.952508 TGCGGAGGAGCAAAGGCA 61.953 61.111 0.00 0.00 45.06 4.75
4644 4759 6.292381 GCCTGTAATCAACTAGCAATAGAACG 60.292 42.308 0.00 0.00 0.00 3.95
4649 4764 6.700081 CGTAAGCCTGTAATCAACTAGCAATA 59.300 38.462 0.00 0.00 31.53 1.90
4660 4775 1.326548 CAACGCCGTAAGCCTGTAATC 59.673 52.381 0.00 0.00 38.78 1.75
4804 4927 1.144057 AGATCCCGTTCGGTCATGC 59.856 57.895 10.36 0.00 0.00 4.06
4910 5033 8.770438 TCATGAAATTTAGCCAAAATTACCAC 57.230 30.769 7.56 2.90 45.12 4.16
5180 5303 2.289072 GCCAGTGACATCTACCGCATAT 60.289 50.000 0.00 0.00 0.00 1.78
5186 5309 1.407437 CCAAGGCCAGTGACATCTACC 60.407 57.143 5.01 0.00 0.00 3.18
5261 5384 4.551702 TGCTAGCCATTGTAAGTTCAGA 57.448 40.909 13.29 0.00 0.00 3.27
5314 5437 0.798389 GTTCCTCGTAACGGGCGTAC 60.798 60.000 0.00 0.00 0.00 3.67
5419 5542 8.841300 TCAATTTAAAACTGCATGTACACAGTA 58.159 29.630 16.86 4.55 46.17 2.74
5504 5632 8.582437 GGGCTACAAAACCTCTAAAATAGTTTT 58.418 33.333 0.00 0.00 41.73 2.43
5506 5634 7.467650 AGGGCTACAAAACCTCTAAAATAGTT 58.532 34.615 0.00 0.00 0.00 2.24
5507 5635 7.029053 AGGGCTACAAAACCTCTAAAATAGT 57.971 36.000 0.00 0.00 0.00 2.12
5508 5636 7.939784 AAGGGCTACAAAACCTCTAAAATAG 57.060 36.000 0.00 0.00 32.29 1.73
5509 5637 7.309560 GCAAAGGGCTACAAAACCTCTAAAATA 60.310 37.037 0.00 0.00 40.25 1.40
5510 5638 6.518369 GCAAAGGGCTACAAAACCTCTAAAAT 60.518 38.462 0.00 0.00 40.25 1.82
5511 5639 5.221362 GCAAAGGGCTACAAAACCTCTAAAA 60.221 40.000 0.00 0.00 40.25 1.52
5512 5640 4.279922 GCAAAGGGCTACAAAACCTCTAAA 59.720 41.667 0.00 0.00 40.25 1.85
5773 6136 4.849111 GACTTGTTCGAGCTAAAGATGG 57.151 45.455 6.39 0.00 0.00 3.51
5790 6153 0.605589 CAGAAGAGGTGGCTCGACTT 59.394 55.000 0.00 0.00 0.00 3.01
5832 6195 0.255890 ACATTCCAGGCGGCTAATGT 59.744 50.000 26.01 26.01 37.65 2.71
5833 6196 0.664761 CACATTCCAGGCGGCTAATG 59.335 55.000 24.95 24.95 35.83 1.90
5860 6223 1.162951 AAGGGAGAGAAGGGGAGGGA 61.163 60.000 0.00 0.00 0.00 4.20
5885 6248 9.822185 AAGCATTGATTTAGTTTGGATTATTCC 57.178 29.630 0.00 0.00 42.94 3.01
5888 6251 9.822185 GGAAAGCATTGATTTAGTTTGGATTAT 57.178 29.630 0.00 0.00 0.00 1.28
5889 6252 9.034800 AGGAAAGCATTGATTTAGTTTGGATTA 57.965 29.630 0.00 0.00 0.00 1.75
5890 6253 7.910584 AGGAAAGCATTGATTTAGTTTGGATT 58.089 30.769 0.00 0.00 0.00 3.01
5891 6254 7.486407 AGGAAAGCATTGATTTAGTTTGGAT 57.514 32.000 0.00 0.00 0.00 3.41
5892 6255 6.916360 AGGAAAGCATTGATTTAGTTTGGA 57.084 33.333 0.00 0.00 0.00 3.53
5893 6256 7.118245 GGAAAGGAAAGCATTGATTTAGTTTGG 59.882 37.037 0.00 0.00 0.00 3.28
5894 6257 7.874528 AGGAAAGGAAAGCATTGATTTAGTTTG 59.125 33.333 0.00 0.00 0.00 2.93
5895 6258 7.966812 AGGAAAGGAAAGCATTGATTTAGTTT 58.033 30.769 0.00 3.43 0.00 2.66
5896 6259 7.452813 AGAGGAAAGGAAAGCATTGATTTAGTT 59.547 33.333 0.00 0.00 0.00 2.24
5897 6260 6.950619 AGAGGAAAGGAAAGCATTGATTTAGT 59.049 34.615 0.00 0.00 0.00 2.24
5898 6261 7.338957 AGAGAGGAAAGGAAAGCATTGATTTAG 59.661 37.037 0.00 0.00 0.00 1.85
5899 6262 7.177878 AGAGAGGAAAGGAAAGCATTGATTTA 58.822 34.615 0.00 0.00 0.00 1.40
5900 6263 6.015282 AGAGAGGAAAGGAAAGCATTGATTT 58.985 36.000 0.00 0.00 0.00 2.17
5901 6264 5.578073 AGAGAGGAAAGGAAAGCATTGATT 58.422 37.500 0.00 0.00 0.00 2.57
5902 6265 5.190357 AGAGAGGAAAGGAAAGCATTGAT 57.810 39.130 0.00 0.00 0.00 2.57
5903 6266 4.647564 AGAGAGGAAAGGAAAGCATTGA 57.352 40.909 0.00 0.00 0.00 2.57
5904 6267 8.401709 GTTAATAGAGAGGAAAGGAAAGCATTG 58.598 37.037 0.00 0.00 0.00 2.82
5905 6268 8.332487 AGTTAATAGAGAGGAAAGGAAAGCATT 58.668 33.333 0.00 0.00 0.00 3.56
5906 6269 7.866870 AGTTAATAGAGAGGAAAGGAAAGCAT 58.133 34.615 0.00 0.00 0.00 3.79
5907 6270 7.038302 TGAGTTAATAGAGAGGAAAGGAAAGCA 60.038 37.037 0.00 0.00 0.00 3.91
5908 6271 7.331791 TGAGTTAATAGAGAGGAAAGGAAAGC 58.668 38.462 0.00 0.00 0.00 3.51
5909 6272 9.898152 ATTGAGTTAATAGAGAGGAAAGGAAAG 57.102 33.333 0.00 0.00 0.00 2.62
5910 6273 9.892130 GATTGAGTTAATAGAGAGGAAAGGAAA 57.108 33.333 0.00 0.00 0.00 3.13
5911 6274 9.046846 TGATTGAGTTAATAGAGAGGAAAGGAA 57.953 33.333 0.00 0.00 0.00 3.36
5912 6275 8.609617 TGATTGAGTTAATAGAGAGGAAAGGA 57.390 34.615 0.00 0.00 0.00 3.36
5913 6276 9.672673 TTTGATTGAGTTAATAGAGAGGAAAGG 57.327 33.333 0.00 0.00 0.00 3.11
5931 6294 9.912634 GAGTTGGTTTTCATAAGATTTGATTGA 57.087 29.630 0.00 0.00 0.00 2.57
5994 6357 7.657336 AGAATGCAAGGAAAGTTTCGATTTTA 58.343 30.769 9.46 0.17 0.00 1.52
5999 6362 3.502211 GGAGAATGCAAGGAAAGTTTCGA 59.498 43.478 9.46 0.00 0.00 3.71
6001 6364 6.183360 GGATAGGAGAATGCAAGGAAAGTTTC 60.183 42.308 7.09 7.09 0.00 2.78
6022 6385 9.722317 AGGTTTATTTTGATTTGGGTATGGATA 57.278 29.630 0.00 0.00 0.00 2.59
6023 6386 8.622572 AGGTTTATTTTGATTTGGGTATGGAT 57.377 30.769 0.00 0.00 0.00 3.41
6024 6387 7.676043 TGAGGTTTATTTTGATTTGGGTATGGA 59.324 33.333 0.00 0.00 0.00 3.41
6051 6414 8.947115 GCAAGGAAAGTGTTGATATAGTTTAGT 58.053 33.333 0.00 0.00 0.00 2.24
6055 6418 8.409358 AAAGCAAGGAAAGTGTTGATATAGTT 57.591 30.769 0.00 0.00 0.00 2.24
6056 6419 8.409358 AAAAGCAAGGAAAGTGTTGATATAGT 57.591 30.769 0.00 0.00 0.00 2.12
6057 6420 7.970614 GGAAAAGCAAGGAAAGTGTTGATATAG 59.029 37.037 0.00 0.00 0.00 1.31
6058 6421 7.093945 GGGAAAAGCAAGGAAAGTGTTGATATA 60.094 37.037 0.00 0.00 0.00 0.86
6059 6422 6.295292 GGGAAAAGCAAGGAAAGTGTTGATAT 60.295 38.462 0.00 0.00 0.00 1.63
6060 6423 5.010617 GGGAAAAGCAAGGAAAGTGTTGATA 59.989 40.000 0.00 0.00 0.00 2.15
6066 6429 3.255888 GGTAGGGAAAAGCAAGGAAAGTG 59.744 47.826 0.00 0.00 0.00 3.16
6068 6431 2.826128 GGGTAGGGAAAAGCAAGGAAAG 59.174 50.000 0.00 0.00 0.00 2.62
6077 6440 5.955355 TGATTTGGTTATGGGTAGGGAAAAG 59.045 40.000 0.00 0.00 0.00 2.27
6084 6447 9.533253 GATTTGAATTGATTTGGTTATGGGTAG 57.467 33.333 0.00 0.00 0.00 3.18
6086 6449 8.149631 AGATTTGAATTGATTTGGTTATGGGT 57.850 30.769 0.00 0.00 0.00 4.51
6088 6451 9.090692 GTGAGATTTGAATTGATTTGGTTATGG 57.909 33.333 0.00 0.00 0.00 2.74
6103 6466 4.177537 TGAGGTTTGGGTGAGATTTGAA 57.822 40.909 0.00 0.00 0.00 2.69
6115 6478 5.427378 AGTTTTGATTTGGTTGAGGTTTGG 58.573 37.500 0.00 0.00 0.00 3.28
6123 6486 5.220835 GGCAAGGAAAGTTTTGATTTGGTTG 60.221 40.000 0.00 0.00 0.00 3.77
6127 6490 5.237127 GGAAGGCAAGGAAAGTTTTGATTTG 59.763 40.000 0.00 0.00 0.00 2.32
6132 6495 2.433970 TGGGAAGGCAAGGAAAGTTTTG 59.566 45.455 0.00 0.00 0.00 2.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.