Multiple sequence alignment - TraesCS3D01G321800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G321800 chr3D 100.000 5459 0 0 1 5459 434956598 434962056 0.000000e+00 10081
1 TraesCS3D01G321800 chr3A 91.898 2518 99 34 2980 5452 573971964 573974421 0.000000e+00 3422
2 TraesCS3D01G321800 chr3A 87.431 2371 137 77 264 2555 573969333 573971621 0.000000e+00 2579
3 TraesCS3D01G321800 chr3A 95.146 309 6 9 2648 2947 573971660 573971968 3.830000e-131 479
4 TraesCS3D01G321800 chr3A 88.182 220 23 2 1 218 573857337 573857555 5.420000e-65 259
5 TraesCS3D01G321800 chr3B 91.034 2543 116 59 2502 4985 571021668 571024157 0.000000e+00 3330
6 TraesCS3D01G321800 chr3B 89.289 1111 41 23 1294 2398 571020538 571021576 0.000000e+00 1321
7 TraesCS3D01G321800 chr3B 92.797 833 25 11 366 1185 571019600 571020410 0.000000e+00 1173
8 TraesCS3D01G321800 chr3B 90.789 304 17 8 5043 5344 571024156 571024450 3.960000e-106 396
9 TraesCS3D01G321800 chr3B 90.323 124 9 3 5332 5452 571024475 571024598 5.660000e-35 159


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G321800 chr3D 434956598 434962056 5458 False 10081.0 10081 100.000000 1 5459 1 chr3D.!!$F1 5458
1 TraesCS3D01G321800 chr3A 573969333 573974421 5088 False 2160.0 3422 91.491667 264 5452 3 chr3A.!!$F2 5188
2 TraesCS3D01G321800 chr3B 571019600 571024598 4998 False 1275.8 3330 90.846400 366 5452 5 chr3B.!!$F1 5086

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
449 453 0.034670 GAACAGCCTCTCCATGCCTT 60.035 55.0 0.0 0.0 0.0 4.35 F
1926 2020 0.105401 GAAGGGTAGGAGGGAGGGAG 60.105 65.0 0.0 0.0 0.0 4.30 F
2214 2324 0.166814 GCCATTCAAGTCAGTCGTGC 59.833 55.0 0.0 0.0 0.0 5.34 F
2670 2812 0.320508 GAGTTCTCCGGGGTTGTGAC 60.321 60.0 0.0 0.0 0.0 3.67 F
2672 2814 0.602905 GTTCTCCGGGGTTGTGACTG 60.603 60.0 0.0 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2149 2247 0.197661 TTTTACCCACCCTCCCCTCT 59.802 55.000 0.00 0.0 0.00 3.69 R
2956 3106 0.116143 CTCCCCCAACCCAATCCAAA 59.884 55.000 0.00 0.0 0.00 3.28 R
3380 3585 0.318441 TCTTACTCTTGCACGCTGCT 59.682 50.000 10.54 0.0 45.31 4.24 R
3509 3717 1.169661 TGAAATTTGCGAGGGTGCGT 61.170 50.000 0.00 0.0 37.81 5.24 R
4593 4830 1.946768 CGAAGCAAACTCCAAACCTGA 59.053 47.619 0.00 0.0 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.075997 CAATCCGCATTGGCAACG 57.924 55.556 0.00 2.12 41.24 4.10
22 23 2.160221 CAATCCGCATTGGCAACGC 61.160 57.895 8.45 8.45 41.24 4.84
52 53 3.842923 CCCATGCTCGCCTCGTCT 61.843 66.667 0.00 0.00 0.00 4.18
53 54 2.185350 CCATGCTCGCCTCGTCTT 59.815 61.111 0.00 0.00 0.00 3.01
54 55 1.437573 CCATGCTCGCCTCGTCTTA 59.562 57.895 0.00 0.00 0.00 2.10
55 56 0.596083 CCATGCTCGCCTCGTCTTAG 60.596 60.000 0.00 0.00 0.00 2.18
56 57 0.596083 CATGCTCGCCTCGTCTTAGG 60.596 60.000 0.00 0.00 39.87 2.69
57 58 1.038130 ATGCTCGCCTCGTCTTAGGT 61.038 55.000 0.00 0.00 39.02 3.08
58 59 1.226717 GCTCGCCTCGTCTTAGGTG 60.227 63.158 0.00 0.00 46.61 4.00
59 60 1.226717 CTCGCCTCGTCTTAGGTGC 60.227 63.158 0.00 0.00 45.16 5.01
60 61 2.202756 CGCCTCGTCTTAGGTGCC 60.203 66.667 0.00 0.00 40.12 5.01
61 62 2.202756 GCCTCGTCTTAGGTGCCG 60.203 66.667 0.00 0.00 39.02 5.69
62 63 3.003113 GCCTCGTCTTAGGTGCCGT 62.003 63.158 0.00 0.00 39.02 5.68
63 64 1.590147 CCTCGTCTTAGGTGCCGTT 59.410 57.895 0.00 0.00 31.46 4.44
64 65 0.813184 CCTCGTCTTAGGTGCCGTTA 59.187 55.000 0.00 0.00 31.46 3.18
65 66 1.468736 CCTCGTCTTAGGTGCCGTTAC 60.469 57.143 0.00 0.00 31.46 2.50
66 67 1.200716 CTCGTCTTAGGTGCCGTTACA 59.799 52.381 0.00 0.00 0.00 2.41
67 68 1.820519 TCGTCTTAGGTGCCGTTACAT 59.179 47.619 0.00 0.00 0.00 2.29
68 69 2.159338 TCGTCTTAGGTGCCGTTACATC 60.159 50.000 0.00 0.00 0.00 3.06
69 70 2.547826 GTCTTAGGTGCCGTTACATCC 58.452 52.381 0.00 0.00 0.00 3.51
70 71 2.093869 GTCTTAGGTGCCGTTACATCCA 60.094 50.000 0.00 0.00 0.00 3.41
71 72 2.093869 TCTTAGGTGCCGTTACATCCAC 60.094 50.000 0.00 0.00 0.00 4.02
72 73 0.173935 TAGGTGCCGTTACATCCACG 59.826 55.000 0.00 0.00 37.39 4.94
73 74 1.079681 GGTGCCGTTACATCCACGA 60.080 57.895 0.00 0.00 40.20 4.35
74 75 0.461339 GGTGCCGTTACATCCACGAT 60.461 55.000 0.00 0.00 40.20 3.73
75 76 0.650512 GTGCCGTTACATCCACGATG 59.349 55.000 0.00 0.08 44.71 3.84
76 77 0.533032 TGCCGTTACATCCACGATGA 59.467 50.000 8.57 0.00 42.09 2.92
77 78 1.138069 TGCCGTTACATCCACGATGAT 59.862 47.619 8.57 0.00 42.09 2.45
78 79 1.526887 GCCGTTACATCCACGATGATG 59.473 52.381 14.46 14.46 46.10 3.07
79 80 1.526887 CCGTTACATCCACGATGATGC 59.473 52.381 15.51 3.24 44.84 3.91
80 81 2.473816 CGTTACATCCACGATGATGCT 58.526 47.619 15.51 8.22 44.84 3.79
81 82 2.472861 CGTTACATCCACGATGATGCTC 59.527 50.000 15.51 7.96 44.84 4.26
82 83 3.457234 GTTACATCCACGATGATGCTCA 58.543 45.455 15.51 3.00 44.84 4.26
83 84 1.945387 ACATCCACGATGATGCTCAC 58.055 50.000 15.51 0.00 44.84 3.51
84 85 1.207811 ACATCCACGATGATGCTCACA 59.792 47.619 15.51 0.00 44.84 3.58
85 86 2.158856 ACATCCACGATGATGCTCACAT 60.159 45.455 15.51 0.00 44.84 3.21
86 87 1.944032 TCCACGATGATGCTCACATG 58.056 50.000 0.00 0.00 36.35 3.21
87 88 1.207811 TCCACGATGATGCTCACATGT 59.792 47.619 0.00 0.00 36.35 3.21
88 89 1.329599 CCACGATGATGCTCACATGTG 59.670 52.381 20.18 20.18 36.35 3.21
89 90 1.329599 CACGATGATGCTCACATGTGG 59.670 52.381 25.16 16.47 36.35 4.17
90 91 0.306840 CGATGATGCTCACATGTGGC 59.693 55.000 25.16 24.55 36.35 5.01
91 92 0.666913 GATGATGCTCACATGTGGCC 59.333 55.000 25.16 16.18 36.35 5.36
92 93 1.099295 ATGATGCTCACATGTGGCCG 61.099 55.000 25.16 14.69 36.35 6.13
93 94 1.746615 GATGCTCACATGTGGCCGT 60.747 57.895 25.16 16.71 36.35 5.68
94 95 1.709147 GATGCTCACATGTGGCCGTC 61.709 60.000 25.16 20.41 36.35 4.79
95 96 3.490759 GCTCACATGTGGCCGTCG 61.491 66.667 25.16 8.51 0.00 5.12
96 97 3.490759 CTCACATGTGGCCGTCGC 61.491 66.667 25.16 0.00 0.00 5.19
102 103 3.943479 ATGTGGCCGTCGCGCTTTA 62.943 57.895 5.56 0.00 35.02 1.85
103 104 3.849953 GTGGCCGTCGCGCTTTAG 61.850 66.667 5.56 0.00 35.02 1.85
104 105 4.058732 TGGCCGTCGCGCTTTAGA 62.059 61.111 5.56 0.00 35.02 2.10
105 106 3.255379 GGCCGTCGCGCTTTAGAG 61.255 66.667 5.56 0.00 35.02 2.43
106 107 2.202570 GCCGTCGCGCTTTAGAGA 60.203 61.111 5.56 0.00 0.00 3.10
107 108 1.804326 GCCGTCGCGCTTTAGAGAA 60.804 57.895 5.56 0.00 0.00 2.87
108 109 1.349259 GCCGTCGCGCTTTAGAGAAA 61.349 55.000 5.56 0.00 0.00 2.52
109 110 1.065358 CCGTCGCGCTTTAGAGAAAA 58.935 50.000 5.56 0.00 0.00 2.29
110 111 1.458064 CCGTCGCGCTTTAGAGAAAAA 59.542 47.619 5.56 0.00 0.00 1.94
111 112 2.472397 CCGTCGCGCTTTAGAGAAAAAG 60.472 50.000 5.56 0.00 39.10 2.27
121 122 6.479095 CTTTAGAGAAAAAGCAGTCCTCTG 57.521 41.667 0.00 0.00 43.87 3.35
122 123 5.808366 TTAGAGAAAAAGCAGTCCTCTGA 57.192 39.130 0.00 0.00 43.76 3.27
123 124 4.906747 AGAGAAAAAGCAGTCCTCTGAT 57.093 40.909 0.00 0.00 43.76 2.90
124 125 4.577875 AGAGAAAAAGCAGTCCTCTGATG 58.422 43.478 0.00 0.00 43.76 3.07
125 126 4.041444 AGAGAAAAAGCAGTCCTCTGATGT 59.959 41.667 0.00 0.00 43.76 3.06
126 127 5.247110 AGAGAAAAAGCAGTCCTCTGATGTA 59.753 40.000 0.00 0.00 43.76 2.29
127 128 6.059787 AGAAAAAGCAGTCCTCTGATGTAT 57.940 37.500 0.00 0.00 43.76 2.29
128 129 7.124901 AGAGAAAAAGCAGTCCTCTGATGTATA 59.875 37.037 0.00 0.00 43.76 1.47
129 130 7.624549 AGAAAAAGCAGTCCTCTGATGTATAA 58.375 34.615 0.00 0.00 43.76 0.98
130 131 7.550906 AGAAAAAGCAGTCCTCTGATGTATAAC 59.449 37.037 0.00 0.00 43.76 1.89
131 132 5.939764 AAGCAGTCCTCTGATGTATAACA 57.060 39.130 0.00 0.00 43.76 2.41
132 133 5.939764 AGCAGTCCTCTGATGTATAACAA 57.060 39.130 0.00 0.00 43.76 2.83
133 134 6.299805 AGCAGTCCTCTGATGTATAACAAA 57.700 37.500 0.00 0.00 43.76 2.83
134 135 6.893583 AGCAGTCCTCTGATGTATAACAAAT 58.106 36.000 0.00 0.00 43.76 2.32
135 136 6.765036 AGCAGTCCTCTGATGTATAACAAATG 59.235 38.462 0.00 0.00 43.76 2.32
136 137 6.512415 GCAGTCCTCTGATGTATAACAAATGC 60.512 42.308 0.00 0.00 43.76 3.56
137 138 6.539826 CAGTCCTCTGATGTATAACAAATGCA 59.460 38.462 0.00 0.00 43.76 3.96
138 139 7.228108 CAGTCCTCTGATGTATAACAAATGCAT 59.772 37.037 0.00 0.00 43.76 3.96
139 140 7.776969 AGTCCTCTGATGTATAACAAATGCATT 59.223 33.333 5.99 5.99 0.00 3.56
140 141 9.056005 GTCCTCTGATGTATAACAAATGCATTA 57.944 33.333 13.39 0.00 0.00 1.90
141 142 9.276590 TCCTCTGATGTATAACAAATGCATTAG 57.723 33.333 13.39 1.70 32.09 1.73
142 143 9.276590 CCTCTGATGTATAACAAATGCATTAGA 57.723 33.333 13.39 6.19 35.56 2.10
154 155 8.761575 ACAAATGCATTAGAAAATTTCGATGT 57.238 26.923 13.39 5.57 33.52 3.06
155 156 8.863049 ACAAATGCATTAGAAAATTTCGATGTC 58.137 29.630 13.39 14.05 33.52 3.06
156 157 7.992180 AATGCATTAGAAAATTTCGATGTCC 57.008 32.000 11.02 9.50 33.52 4.02
157 158 5.568482 TGCATTAGAAAATTTCGATGTCCG 58.432 37.500 18.82 0.00 40.25 4.79
158 159 4.437820 GCATTAGAAAATTTCGATGTCCGC 59.562 41.667 18.82 7.45 38.37 5.54
159 160 5.568482 CATTAGAAAATTTCGATGTCCGCA 58.432 37.500 13.29 0.00 38.37 5.69
160 161 5.811399 TTAGAAAATTTCGATGTCCGCAT 57.189 34.783 0.00 0.00 38.37 4.73
161 162 4.701956 AGAAAATTTCGATGTCCGCATT 57.298 36.364 0.00 0.00 38.37 3.56
162 163 4.662145 AGAAAATTTCGATGTCCGCATTC 58.338 39.130 0.00 0.00 38.37 2.67
163 164 4.396166 AGAAAATTTCGATGTCCGCATTCT 59.604 37.500 0.00 0.00 38.37 2.40
164 165 3.680642 AATTTCGATGTCCGCATTCTG 57.319 42.857 0.00 0.00 38.37 3.02
165 166 0.726827 TTTCGATGTCCGCATTCTGC 59.273 50.000 0.00 0.00 40.69 4.26
166 167 0.390998 TTCGATGTCCGCATTCTGCA 60.391 50.000 0.00 0.00 45.36 4.41
167 168 0.807275 TCGATGTCCGCATTCTGCAG 60.807 55.000 7.63 7.63 45.36 4.41
168 169 1.086067 CGATGTCCGCATTCTGCAGT 61.086 55.000 14.67 0.00 45.36 4.40
169 170 0.376152 GATGTCCGCATTCTGCAGTG 59.624 55.000 14.67 6.80 45.36 3.66
170 171 0.321919 ATGTCCGCATTCTGCAGTGT 60.322 50.000 14.67 0.18 45.36 3.55
171 172 0.950555 TGTCCGCATTCTGCAGTGTC 60.951 55.000 14.67 1.60 45.36 3.67
172 173 0.950555 GTCCGCATTCTGCAGTGTCA 60.951 55.000 14.67 0.00 45.36 3.58
173 174 0.036105 TCCGCATTCTGCAGTGTCAT 60.036 50.000 14.67 0.00 45.36 3.06
174 175 0.806868 CCGCATTCTGCAGTGTCATT 59.193 50.000 14.67 0.00 45.36 2.57
175 176 1.202110 CCGCATTCTGCAGTGTCATTC 60.202 52.381 14.67 0.00 45.36 2.67
176 177 1.736126 CGCATTCTGCAGTGTCATTCT 59.264 47.619 14.67 0.00 45.36 2.40
177 178 2.222976 CGCATTCTGCAGTGTCATTCTC 60.223 50.000 14.67 0.00 45.36 2.87
178 179 3.008330 GCATTCTGCAGTGTCATTCTCT 58.992 45.455 14.67 0.00 44.26 3.10
179 180 4.186926 GCATTCTGCAGTGTCATTCTCTA 58.813 43.478 14.67 0.00 44.26 2.43
180 181 4.633126 GCATTCTGCAGTGTCATTCTCTAA 59.367 41.667 14.67 0.00 44.26 2.10
181 182 5.296283 GCATTCTGCAGTGTCATTCTCTAAT 59.704 40.000 14.67 0.00 44.26 1.73
182 183 6.183360 GCATTCTGCAGTGTCATTCTCTAATT 60.183 38.462 14.67 0.00 44.26 1.40
183 184 7.627939 GCATTCTGCAGTGTCATTCTCTAATTT 60.628 37.037 14.67 0.00 44.26 1.82
184 185 7.750229 TTCTGCAGTGTCATTCTCTAATTTT 57.250 32.000 14.67 0.00 0.00 1.82
185 186 7.369803 TCTGCAGTGTCATTCTCTAATTTTC 57.630 36.000 14.67 0.00 0.00 2.29
186 187 6.091305 TCTGCAGTGTCATTCTCTAATTTTCG 59.909 38.462 14.67 0.00 0.00 3.46
187 188 5.931724 TGCAGTGTCATTCTCTAATTTTCGA 59.068 36.000 0.00 0.00 0.00 3.71
188 189 6.426633 TGCAGTGTCATTCTCTAATTTTCGAA 59.573 34.615 0.00 0.00 0.00 3.71
189 190 7.119699 TGCAGTGTCATTCTCTAATTTTCGAAT 59.880 33.333 0.00 0.00 0.00 3.34
190 191 8.604035 GCAGTGTCATTCTCTAATTTTCGAATA 58.396 33.333 0.00 0.00 0.00 1.75
205 206 9.657419 AATTTTCGAATAAGAGAAAAATGCCAT 57.343 25.926 0.00 0.00 45.61 4.40
206 207 9.657419 ATTTTCGAATAAGAGAAAAATGCCATT 57.343 25.926 0.00 0.00 45.61 3.16
207 208 8.687824 TTTCGAATAAGAGAAAAATGCCATTC 57.312 30.769 0.00 0.00 33.93 2.67
208 209 7.630242 TCGAATAAGAGAAAAATGCCATTCT 57.370 32.000 0.00 0.00 38.56 2.40
216 217 7.343614 GAGAAAAATGCCATTCTCTTGTTTC 57.656 36.000 7.98 3.58 45.15 2.78
217 218 6.819284 AGAAAAATGCCATTCTCTTGTTTCA 58.181 32.000 10.82 0.00 30.16 2.69
218 219 7.274447 AGAAAAATGCCATTCTCTTGTTTCAA 58.726 30.769 10.82 0.00 30.16 2.69
219 220 7.440255 AGAAAAATGCCATTCTCTTGTTTCAAG 59.560 33.333 10.82 3.44 30.16 3.02
220 221 4.796038 ATGCCATTCTCTTGTTTCAAGG 57.204 40.909 9.18 1.94 0.00 3.61
221 222 2.297033 TGCCATTCTCTTGTTTCAAGGC 59.703 45.455 9.18 0.00 39.95 4.35
222 223 2.297033 GCCATTCTCTTGTTTCAAGGCA 59.703 45.455 9.18 0.00 39.35 4.75
223 224 3.056322 GCCATTCTCTTGTTTCAAGGCAT 60.056 43.478 9.18 0.00 39.35 4.40
224 225 4.491676 CCATTCTCTTGTTTCAAGGCATG 58.508 43.478 9.18 8.63 0.00 4.06
225 226 4.021719 CCATTCTCTTGTTTCAAGGCATGT 60.022 41.667 9.18 0.00 0.00 3.21
226 227 5.510179 CCATTCTCTTGTTTCAAGGCATGTT 60.510 40.000 9.18 0.00 0.00 2.71
227 228 6.294675 CCATTCTCTTGTTTCAAGGCATGTTA 60.295 38.462 9.18 0.00 0.00 2.41
228 229 6.707440 TTCTCTTGTTTCAAGGCATGTTAA 57.293 33.333 9.18 0.00 0.00 2.01
229 230 6.707440 TCTCTTGTTTCAAGGCATGTTAAA 57.293 33.333 9.18 0.00 0.00 1.52
230 231 7.106439 TCTCTTGTTTCAAGGCATGTTAAAA 57.894 32.000 9.18 0.00 0.00 1.52
231 232 7.551585 TCTCTTGTTTCAAGGCATGTTAAAAA 58.448 30.769 9.18 0.00 0.00 1.94
259 260 9.645059 TGTTAAGAGTTTCATACATTCTCTCTG 57.355 33.333 0.00 0.00 34.91 3.35
260 261 9.862371 GTTAAGAGTTTCATACATTCTCTCTGA 57.138 33.333 0.00 0.00 34.91 3.27
262 263 6.572519 AGAGTTTCATACATTCTCTCTGAGC 58.427 40.000 0.00 0.00 30.98 4.26
268 269 5.774184 TCATACATTCTCTCTGAGCTAGCAT 59.226 40.000 18.83 1.44 0.00 3.79
288 290 4.999311 GCATTTTCCCTGCTTCTTCAATTT 59.001 37.500 0.00 0.00 36.68 1.82
315 317 5.644977 AAAAGCTAGCATTTCCCTACAAC 57.355 39.130 18.83 0.00 0.00 3.32
418 422 1.530013 TTCCTCGGTCGTCCCAGTTC 61.530 60.000 0.00 0.00 0.00 3.01
435 439 0.882927 TTCGCCAAACCGAGGAACAG 60.883 55.000 0.00 0.00 38.60 3.16
449 453 0.034670 GAACAGCCTCTCCATGCCTT 60.035 55.000 0.00 0.00 0.00 4.35
499 506 1.571773 AAAGCCGGGCATAGAAGGGT 61.572 55.000 23.09 0.00 35.83 4.34
608 629 4.341783 GCAGTGACTGGCCTGGCT 62.342 66.667 19.68 7.36 31.21 4.75
723 744 3.579685 TGCGAGACAGACCGAGAG 58.420 61.111 0.00 0.00 0.00 3.20
730 757 2.278182 GACAGACCGAGAGCCTCTGC 62.278 65.000 0.00 0.00 37.70 4.26
753 780 0.106519 AGAGAGAGGCAGAGAGAGGC 60.107 60.000 0.00 0.00 0.00 4.70
770 797 1.360911 GCAGTAGGAGTAGCTCGCC 59.639 63.158 0.00 0.00 36.23 5.54
772 799 0.814410 CAGTAGGAGTAGCTCGCCGA 60.814 60.000 0.00 0.00 40.97 5.54
925 964 2.202743 GAGCGCGACCACAGCATA 60.203 61.111 12.10 0.00 34.19 3.14
926 965 2.202797 AGCGCGACCACAGCATAG 60.203 61.111 12.10 0.00 34.19 2.23
927 966 3.929948 GCGCGACCACAGCATAGC 61.930 66.667 12.10 0.00 34.19 2.97
928 967 2.202797 CGCGACCACAGCATAGCT 60.203 61.111 0.00 0.00 40.77 3.32
929 968 1.065764 CGCGACCACAGCATAGCTA 59.934 57.895 0.00 0.00 36.40 3.32
930 969 0.936764 CGCGACCACAGCATAGCTAG 60.937 60.000 0.00 0.00 36.40 3.42
934 973 0.467384 ACCACAGCATAGCTAGCCAG 59.533 55.000 12.13 2.41 36.40 4.85
1178 1223 1.150536 CTCCTCTCTCTCTCCCCCG 59.849 68.421 0.00 0.00 0.00 5.73
1180 1225 2.277072 CTCTCTCTCTCCCCCGCA 59.723 66.667 0.00 0.00 0.00 5.69
1185 1230 2.528127 TCTCTCCCCCGCAACCAA 60.528 61.111 0.00 0.00 0.00 3.67
1186 1231 2.124507 CTCTCTCCCCCGCAACCAAA 62.125 60.000 0.00 0.00 0.00 3.28
1189 1248 1.530655 CTCCCCCGCAACCAAACTT 60.531 57.895 0.00 0.00 0.00 2.66
1190 1249 1.805428 CTCCCCCGCAACCAAACTTG 61.805 60.000 0.00 0.00 0.00 3.16
1192 1251 1.681486 CCCCCGCAACCAAACTTGTT 61.681 55.000 0.00 0.00 0.00 2.83
1197 1256 1.587946 CGCAACCAAACTTGTTCTTGC 59.412 47.619 10.74 10.74 32.38 4.01
1198 1257 1.933181 GCAACCAAACTTGTTCTTGCC 59.067 47.619 10.10 0.00 30.85 4.52
1199 1258 2.418609 GCAACCAAACTTGTTCTTGCCT 60.419 45.455 10.10 0.00 30.85 4.75
1200 1262 3.447742 CAACCAAACTTGTTCTTGCCTC 58.552 45.455 0.00 0.00 0.00 4.70
1202 1264 2.952310 ACCAAACTTGTTCTTGCCTCTC 59.048 45.455 0.00 0.00 0.00 3.20
1210 1272 7.010339 ACTTGTTCTTGCCTCTCTTATTAGT 57.990 36.000 0.00 0.00 0.00 2.24
1214 1276 6.665680 TGTTCTTGCCTCTCTTATTAGTCTCT 59.334 38.462 0.00 0.00 0.00 3.10
1226 1288 2.874648 TAGTCTCTCCGCCGCCGTAA 62.875 60.000 0.00 0.00 0.00 3.18
1231 1293 4.884257 TCCGCCGCCGTAAGCATC 62.884 66.667 0.00 0.00 44.04 3.91
1233 1295 3.630148 CGCCGCCGTAAGCATCAG 61.630 66.667 0.00 0.00 44.04 2.90
1234 1296 2.202878 GCCGCCGTAAGCATCAGA 60.203 61.111 0.00 0.00 44.04 3.27
1235 1297 2.240500 GCCGCCGTAAGCATCAGAG 61.241 63.158 0.00 0.00 44.04 3.35
1236 1298 1.437573 CCGCCGTAAGCATCAGAGA 59.562 57.895 0.00 0.00 44.04 3.10
1237 1299 0.179111 CCGCCGTAAGCATCAGAGAA 60.179 55.000 0.00 0.00 44.04 2.87
1238 1300 1.640428 CGCCGTAAGCATCAGAGAAA 58.360 50.000 0.00 0.00 44.04 2.52
1240 1302 2.346803 GCCGTAAGCATCAGAGAAACA 58.653 47.619 0.00 0.00 42.97 2.83
1246 1308 1.421485 CATCAGAGAAACACGCCGC 59.579 57.895 0.00 0.00 0.00 6.53
1249 1311 2.110213 AGAGAAACACGCCGCCAA 59.890 55.556 0.00 0.00 0.00 4.52
1252 1314 1.298859 GAGAAACACGCCGCCAATCT 61.299 55.000 0.00 0.00 0.00 2.40
1261 1323 0.239347 GCCGCCAATCTATCATGCAC 59.761 55.000 0.00 0.00 0.00 4.57
1263 1325 1.596603 CGCCAATCTATCATGCACCA 58.403 50.000 0.00 0.00 0.00 4.17
1267 1329 3.548770 CCAATCTATCATGCACCACAGT 58.451 45.455 0.00 0.00 0.00 3.55
1278 1340 3.964875 CCACAGTGGTTGGCGCAC 61.965 66.667 11.99 0.00 31.35 5.34
1279 1341 3.964875 CACAGTGGTTGGCGCACC 61.965 66.667 10.83 10.29 37.34 5.01
1284 1346 2.036006 GTGGTTGGCGCACCGATTA 61.036 57.895 10.83 0.00 40.09 1.75
1286 1348 1.135939 GGTTGGCGCACCGATTAAC 59.864 57.895 10.83 2.31 39.70 2.01
1288 1350 0.519961 GTTGGCGCACCGATTAACTT 59.480 50.000 10.83 0.00 39.70 2.66
1289 1351 1.068816 GTTGGCGCACCGATTAACTTT 60.069 47.619 10.83 0.00 39.70 2.66
1290 1352 0.800012 TGGCGCACCGATTAACTTTC 59.200 50.000 10.83 0.00 39.70 2.62
1300 1383 7.465379 CGCACCGATTAACTTTCTATTGATTCA 60.465 37.037 0.00 0.00 0.00 2.57
1308 1391 7.565323 AACTTTCTATTGATTCATCCTGCTC 57.435 36.000 0.00 0.00 0.00 4.26
1310 1393 5.901413 TTCTATTGATTCATCCTGCTCCT 57.099 39.130 0.00 0.00 0.00 3.69
1376 1459 1.670406 CAGCCTGTGAGTGCACTCC 60.670 63.158 37.23 28.76 45.36 3.85
1377 1460 2.359230 GCCTGTGAGTGCACTCCC 60.359 66.667 37.23 29.55 45.36 4.30
1378 1461 2.888447 GCCTGTGAGTGCACTCCCT 61.888 63.158 37.23 10.40 45.36 4.20
1379 1462 1.757306 CCTGTGAGTGCACTCCCTT 59.243 57.895 37.23 9.99 45.36 3.95
1380 1463 0.604780 CCTGTGAGTGCACTCCCTTG 60.605 60.000 37.23 24.98 45.36 3.61
1381 1464 1.227943 TGTGAGTGCACTCCCTTGC 60.228 57.895 37.23 23.48 45.36 4.01
1382 1465 1.072159 GTGAGTGCACTCCCTTGCT 59.928 57.895 37.23 7.57 43.41 3.91
1383 1466 0.952984 GTGAGTGCACTCCCTTGCTC 60.953 60.000 37.23 16.58 43.41 4.26
1384 1467 1.376553 GAGTGCACTCCCTTGCTCC 60.377 63.158 32.55 8.09 43.41 4.70
1389 1472 0.905357 GCACTCCCTTGCTCCTCTTA 59.095 55.000 0.00 0.00 39.59 2.10
1394 1477 3.712218 ACTCCCTTGCTCCTCTTATTACC 59.288 47.826 0.00 0.00 0.00 2.85
1406 1489 7.540474 TCCTCTTATTACCACTATTAGCCTG 57.460 40.000 0.00 0.00 0.00 4.85
1421 1504 5.435686 TTAGCCTGATTGATTGGTACAGT 57.564 39.130 0.00 0.00 42.39 3.55
1422 1505 3.878778 AGCCTGATTGATTGGTACAGTC 58.121 45.455 0.00 0.00 45.74 3.51
1433 1516 5.918608 GATTGGTACAGTCAGGACATATGT 58.081 41.667 8.43 8.43 44.84 2.29
1452 1538 4.483243 ATCGGGCCGGCGTTGATT 62.483 61.111 27.98 5.47 0.00 2.57
1456 1542 4.481112 GGCCGGCGTTGATTGCTG 62.481 66.667 22.54 0.00 38.47 4.41
1459 1545 4.817063 CGGCGTTGATTGCTGCGG 62.817 66.667 0.00 0.00 30.94 5.69
1460 1546 3.737172 GGCGTTGATTGCTGCGGT 61.737 61.111 0.00 0.00 0.00 5.68
1703 1797 3.780275 AGTCCCCTCCCCTAGCCC 61.780 72.222 0.00 0.00 0.00 5.19
1822 1916 3.189921 GCTGTGCGCCATTGATGA 58.810 55.556 4.18 0.00 0.00 2.92
1869 1963 3.039134 CGCAAGTCCAACCCCAAC 58.961 61.111 0.00 0.00 0.00 3.77
1873 1967 2.015726 AAGTCCAACCCCAACCCCA 61.016 57.895 0.00 0.00 0.00 4.96
1875 1969 1.835267 GTCCAACCCCAACCCCAAC 60.835 63.158 0.00 0.00 0.00 3.77
1877 1971 2.525629 CAACCCCAACCCCAACCC 60.526 66.667 0.00 0.00 0.00 4.11
1878 1972 4.227583 AACCCCAACCCCAACCCG 62.228 66.667 0.00 0.00 0.00 5.28
1880 1974 4.360405 CCCCAACCCCAACCCGAG 62.360 72.222 0.00 0.00 0.00 4.63
1881 1975 3.576259 CCCAACCCCAACCCGAGT 61.576 66.667 0.00 0.00 0.00 4.18
1882 1976 2.282180 CCAACCCCAACCCGAGTG 60.282 66.667 0.00 0.00 0.00 3.51
1883 1977 2.824880 CCAACCCCAACCCGAGTGA 61.825 63.158 0.00 0.00 0.00 3.41
1884 1978 1.302511 CAACCCCAACCCGAGTGAG 60.303 63.158 0.00 0.00 0.00 3.51
1920 2014 2.502130 GAGACAAAGAAGGGTAGGAGGG 59.498 54.545 0.00 0.00 0.00 4.30
1921 2015 2.113777 AGACAAAGAAGGGTAGGAGGGA 59.886 50.000 0.00 0.00 0.00 4.20
1922 2016 2.502130 GACAAAGAAGGGTAGGAGGGAG 59.498 54.545 0.00 0.00 0.00 4.30
1923 2017 1.840635 CAAAGAAGGGTAGGAGGGAGG 59.159 57.143 0.00 0.00 0.00 4.30
1924 2018 0.343726 AAGAAGGGTAGGAGGGAGGG 59.656 60.000 0.00 0.00 0.00 4.30
1925 2019 0.557907 AGAAGGGTAGGAGGGAGGGA 60.558 60.000 0.00 0.00 0.00 4.20
1926 2020 0.105401 GAAGGGTAGGAGGGAGGGAG 60.105 65.000 0.00 0.00 0.00 4.30
1927 2021 1.604592 AAGGGTAGGAGGGAGGGAGG 61.605 65.000 0.00 0.00 0.00 4.30
1985 2083 6.974622 GCTTTCATCTTTTCACTTTGTTCTGA 59.025 34.615 0.00 0.00 0.00 3.27
2137 2235 0.886490 GGCTGTGATTATGCCGGGAG 60.886 60.000 2.18 0.00 37.11 4.30
2138 2236 1.510480 GCTGTGATTATGCCGGGAGC 61.510 60.000 2.18 0.00 44.14 4.70
2214 2324 0.166814 GCCATTCAAGTCAGTCGTGC 59.833 55.000 0.00 0.00 0.00 5.34
2215 2325 0.439985 CCATTCAAGTCAGTCGTGCG 59.560 55.000 0.00 0.00 0.00 5.34
2216 2326 1.139989 CATTCAAGTCAGTCGTGCGT 58.860 50.000 0.00 0.00 0.00 5.24
2217 2327 1.136529 CATTCAAGTCAGTCGTGCGTG 60.137 52.381 0.00 0.00 0.00 5.34
2376 2491 4.409588 CGCTACACGCACACGCAC 62.410 66.667 0.00 0.00 45.53 5.34
2390 2505 1.197492 CACGCACATGCTACACAACAT 59.803 47.619 1.82 0.00 39.32 2.71
2391 2506 2.414825 CACGCACATGCTACACAACATA 59.585 45.455 1.82 0.00 39.32 2.29
2398 2522 6.701841 GCACATGCTACACAACATAGTAGTAT 59.298 38.462 0.00 0.00 42.03 2.12
2430 2554 2.808543 GGACTTGTGGAAGTTGCTACTG 59.191 50.000 0.36 0.00 42.80 2.74
2433 2557 3.214328 CTTGTGGAAGTTGCTACTGGTT 58.786 45.455 0.36 0.00 34.01 3.67
2434 2558 4.141574 ACTTGTGGAAGTTGCTACTGGTTA 60.142 41.667 0.36 0.00 39.56 2.85
2435 2559 4.002906 TGTGGAAGTTGCTACTGGTTAG 57.997 45.455 0.36 0.00 34.01 2.34
2436 2560 3.389983 TGTGGAAGTTGCTACTGGTTAGT 59.610 43.478 0.36 0.00 40.99 2.24
2469 2593 2.053627 CGGTTTCAAAAGCATGACAGC 58.946 47.619 0.00 0.00 36.24 4.40
2497 2621 4.165565 TGATTCTCTCCTCAGCCATTGAAT 59.834 41.667 0.00 0.00 34.81 2.57
2500 2624 3.265221 TCTCTCCTCAGCCATTGAATTGT 59.735 43.478 0.00 0.00 34.81 2.71
2518 2642 8.519492 TGAATTGTTTTCACTAATTAAGCTGC 57.481 30.769 0.00 0.00 0.00 5.25
2529 2653 6.582295 CACTAATTAAGCTGCGTGAATTTGTT 59.418 34.615 15.32 0.00 29.01 2.83
2532 2656 2.693797 AGCTGCGTGAATTTGTTCTG 57.306 45.000 0.00 0.00 0.00 3.02
2542 2666 6.506357 GCGTGAATTTGTTCTGTTTTTCACTC 60.506 38.462 10.69 1.14 40.29 3.51
2574 2698 6.866770 TGAAGTCTCTCACTAATTAAACCGTG 59.133 38.462 0.00 0.00 32.30 4.94
2576 2700 5.047235 AGTCTCTCACTAATTAAACCGTGCT 60.047 40.000 0.00 0.00 31.37 4.40
2586 2710 8.445493 ACTAATTAAACCGTGCTACATGTTTAC 58.555 33.333 2.30 0.00 0.00 2.01
2595 2719 5.120208 CGTGCTACATGTTTACTAAGCTTGT 59.880 40.000 9.86 7.95 0.00 3.16
2596 2720 6.347402 CGTGCTACATGTTTACTAAGCTTGTT 60.347 38.462 9.86 0.00 0.00 2.83
2597 2721 7.148705 CGTGCTACATGTTTACTAAGCTTGTTA 60.149 37.037 9.86 0.00 0.00 2.41
2669 2811 0.471211 AGAGTTCTCCGGGGTTGTGA 60.471 55.000 0.00 0.00 0.00 3.58
2670 2812 0.320508 GAGTTCTCCGGGGTTGTGAC 60.321 60.000 0.00 0.00 0.00 3.67
2672 2814 0.602905 GTTCTCCGGGGTTGTGACTG 60.603 60.000 0.00 0.00 0.00 3.51
2938 3088 2.645297 ACCCCTTCCCTTCTTTCTCTTC 59.355 50.000 0.00 0.00 0.00 2.87
2944 3094 5.222027 CCTTCCCTTCTTTCTCTTCCTTTCT 60.222 44.000 0.00 0.00 0.00 2.52
2976 3138 0.778078 TTGGATTGGGTTGGGGGAGA 60.778 55.000 0.00 0.00 0.00 3.71
3164 3369 6.756299 AAAGAAGAGAAGAATTGGATGCTC 57.244 37.500 0.00 0.00 0.00 4.26
3241 3446 4.019321 AGCCTTTATTCCTCTGCACTTACA 60.019 41.667 0.00 0.00 0.00 2.41
3244 3449 5.882557 CCTTTATTCCTCTGCACTTACACAT 59.117 40.000 0.00 0.00 0.00 3.21
3255 3460 3.068307 GCACTTACACATATCCCTCTCGT 59.932 47.826 0.00 0.00 0.00 4.18
3261 3466 5.422214 ACACATATCCCTCTCGTCTTTTT 57.578 39.130 0.00 0.00 0.00 1.94
3338 3543 0.764752 CCCCACCCTCATCTCTACCC 60.765 65.000 0.00 0.00 0.00 3.69
3351 3556 8.093927 CCTCATCTCTACCCTTCATCTTTAATC 58.906 40.741 0.00 0.00 0.00 1.75
3375 3580 5.337975 CCACTTCCTCTTCTTAGCTTAGCTT 60.338 44.000 13.44 0.00 40.44 3.74
3376 3581 6.127310 CCACTTCCTCTTCTTAGCTTAGCTTA 60.127 42.308 13.44 1.51 40.44 3.09
3377 3582 6.978080 CACTTCCTCTTCTTAGCTTAGCTTAG 59.022 42.308 13.44 13.40 40.44 2.18
3378 3583 5.523438 TCCTCTTCTTAGCTTAGCTTAGC 57.477 43.478 16.83 16.83 40.44 3.09
3379 3584 4.342665 TCCTCTTCTTAGCTTAGCTTAGCC 59.657 45.833 20.52 3.76 42.20 3.93
3380 3585 4.100189 CCTCTTCTTAGCTTAGCTTAGCCA 59.900 45.833 20.52 4.76 42.20 4.75
3381 3586 5.269505 TCTTCTTAGCTTAGCTTAGCCAG 57.730 43.478 20.52 16.33 42.20 4.85
3402 3610 2.930040 GCAGCGTGCAAGAGTAAGATTA 59.070 45.455 2.99 0.00 44.26 1.75
3445 3653 5.697473 TTATTCCGTTTGATTTGCAGACA 57.303 34.783 0.00 0.00 31.39 3.41
3451 3659 3.568538 GTTTGATTTGCAGACAATCGCT 58.431 40.909 5.39 0.00 35.21 4.93
3463 3671 2.417933 GACAATCGCTGTGATTCAAGCT 59.582 45.455 13.20 0.00 45.59 3.74
3509 3717 2.076100 CCTGCAAGATCGTAAGTGCAA 58.924 47.619 10.67 0.00 43.63 4.08
3578 3786 3.826236 TTTGTCGTTTTGGTCGTCAAA 57.174 38.095 6.63 6.63 42.98 2.69
3924 4140 2.279851 TCGATGCCGCATTACCCG 60.280 61.111 7.43 6.58 35.37 5.28
3926 4142 2.978010 GATGCCGCATTACCCGGG 60.978 66.667 22.25 22.25 45.66 5.73
4042 4270 4.804420 AGATGCAGCCCGGGGAGA 62.804 66.667 25.28 0.00 0.00 3.71
4468 4705 0.163788 CTTGGAGTAGCAACGCAACG 59.836 55.000 0.00 0.00 0.00 4.10
4469 4706 1.837538 TTGGAGTAGCAACGCAACGC 61.838 55.000 0.00 0.00 0.00 4.84
4470 4707 2.314647 GGAGTAGCAACGCAACGCA 61.315 57.895 0.00 0.00 0.00 5.24
4471 4708 1.567537 GAGTAGCAACGCAACGCAA 59.432 52.632 0.00 0.00 0.00 4.85
4514 4751 2.731027 CGATCATCCTCACGACGACAAA 60.731 50.000 0.00 0.00 0.00 2.83
4528 4765 3.671322 CGACAAACGTACGGACTTTAC 57.329 47.619 21.06 7.86 37.22 2.01
4566 4803 6.139435 CACTTTTTGTTTTGTTCCAACCAAC 58.861 36.000 0.00 0.00 0.00 3.77
4567 4804 5.239744 ACTTTTTGTTTTGTTCCAACCAACC 59.760 36.000 1.19 0.00 0.00 3.77
4568 4805 4.351874 TTTGTTTTGTTCCAACCAACCA 57.648 36.364 1.19 0.00 0.00 3.67
4569 4806 3.601443 TGTTTTGTTCCAACCAACCAG 57.399 42.857 1.19 0.00 0.00 4.00
4635 4873 7.724305 TCGGCTTAATTAGATCATGTAAACC 57.276 36.000 0.00 0.00 0.00 3.27
4679 4917 2.656897 CGTACGTGTCTCGATCGATCTG 60.657 54.545 19.78 15.63 42.86 2.90
4801 5039 5.299028 GGTGCAATGATGGTGATGTACAATA 59.701 40.000 0.00 0.00 31.16 1.90
4958 5203 3.933332 GCACAGTAGGAGTACAACAATCC 59.067 47.826 0.00 0.00 0.00 3.01
4993 5238 3.139077 GTCCTCTGAAATTCAACCGTGT 58.861 45.455 0.00 0.00 0.00 4.49
4998 5243 3.314080 TCTGAAATTCAACCGTGTTGGAC 59.686 43.478 14.23 0.00 42.00 4.02
5000 5245 3.066064 TGAAATTCAACCGTGTTGGACTG 59.934 43.478 14.23 0.00 42.00 3.51
5012 5257 4.569162 CGTGTTGGACTGTTTCAGTTCTTA 59.431 41.667 9.21 0.00 45.44 2.10
5015 5260 6.038271 GTGTTGGACTGTTTCAGTTCTTATGT 59.962 38.462 9.21 0.00 45.44 2.29
5048 5296 3.518590 CATTCCATCCTTTGCTTTGCTC 58.481 45.455 0.00 0.00 0.00 4.26
5132 5380 2.164827 TGTGCCGACGATGTACTTGTAT 59.835 45.455 0.00 0.00 0.00 2.29
5202 5451 1.006825 CATGAGACGTCGCGTTCCAA 61.007 55.000 11.59 0.00 41.37 3.53
5214 5463 4.092968 GTCGCGTTCCAAGAAATGATTAGT 59.907 41.667 5.77 0.00 0.00 2.24
5267 5516 5.467063 CAGGTAGTTTCTGAAAGGACAAGAC 59.533 44.000 2.48 0.00 34.36 3.01
5418 5714 1.289109 GCGAGCAGCTTTACGGTTCA 61.289 55.000 0.00 0.00 44.04 3.18
5419 5715 0.438830 CGAGCAGCTTTACGGTTCAC 59.561 55.000 0.00 0.00 0.00 3.18
5432 5728 2.147958 CGGTTCACGGATGGAAGAAAA 58.852 47.619 0.00 0.00 39.42 2.29
5434 5730 3.364964 CGGTTCACGGATGGAAGAAAAAG 60.365 47.826 0.00 0.00 39.42 2.27
5439 5735 6.072112 TCACGGATGGAAGAAAAAGAAAAG 57.928 37.500 0.00 0.00 0.00 2.27
5440 5736 4.681483 CACGGATGGAAGAAAAAGAAAAGC 59.319 41.667 0.00 0.00 0.00 3.51
5442 5738 4.556699 CGGATGGAAGAAAAAGAAAAGCGT 60.557 41.667 0.00 0.00 0.00 5.07
5443 5739 4.917998 GGATGGAAGAAAAAGAAAAGCGTC 59.082 41.667 0.00 0.00 0.00 5.19
5444 5740 4.974368 TGGAAGAAAAAGAAAAGCGTCA 57.026 36.364 0.00 0.00 0.00 4.35
5446 5742 4.638421 TGGAAGAAAAAGAAAAGCGTCAGA 59.362 37.500 0.00 0.00 0.00 3.27
5447 5743 5.299279 TGGAAGAAAAAGAAAAGCGTCAGAT 59.701 36.000 0.00 0.00 0.00 2.90
5449 5745 7.174946 TGGAAGAAAAAGAAAAGCGTCAGATAT 59.825 33.333 0.00 0.00 0.00 1.63
5451 5747 9.479278 GAAGAAAAAGAAAAGCGTCAGATATAC 57.521 33.333 0.00 0.00 0.00 1.47
5452 5748 8.779354 AGAAAAAGAAAAGCGTCAGATATACT 57.221 30.769 0.00 0.00 0.00 2.12
5453 5749 8.874816 AGAAAAAGAAAAGCGTCAGATATACTC 58.125 33.333 0.00 0.00 0.00 2.59
5454 5750 7.541122 AAAAGAAAAGCGTCAGATATACTCC 57.459 36.000 0.00 0.00 0.00 3.85
5456 5752 4.039366 AGAAAAGCGTCAGATATACTCCCC 59.961 45.833 0.00 0.00 0.00 4.81
5457 5753 1.535833 AGCGTCAGATATACTCCCCG 58.464 55.000 0.00 0.00 0.00 5.73
5458 5754 1.202903 AGCGTCAGATATACTCCCCGT 60.203 52.381 0.00 0.00 0.00 5.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.160221 GCGTTGCCAATGCGGATTG 61.160 57.895 21.46 21.46 41.78 2.67
5 6 2.181525 GCGTTGCCAATGCGGATT 59.818 55.556 5.78 0.00 41.78 3.01
35 36 2.016393 TAAGACGAGGCGAGCATGGG 62.016 60.000 0.00 0.00 0.00 4.00
36 37 0.596083 CTAAGACGAGGCGAGCATGG 60.596 60.000 0.00 0.00 0.00 3.66
37 38 0.596083 CCTAAGACGAGGCGAGCATG 60.596 60.000 0.00 0.00 0.00 4.06
38 39 1.038130 ACCTAAGACGAGGCGAGCAT 61.038 55.000 0.00 0.00 40.65 3.79
39 40 1.677966 ACCTAAGACGAGGCGAGCA 60.678 57.895 0.00 0.00 40.65 4.26
40 41 1.226717 CACCTAAGACGAGGCGAGC 60.227 63.158 0.00 0.00 40.65 5.03
41 42 1.226717 GCACCTAAGACGAGGCGAG 60.227 63.158 0.00 0.00 40.65 5.03
42 43 2.707849 GGCACCTAAGACGAGGCGA 61.708 63.158 0.00 0.00 40.65 5.54
43 44 2.202756 GGCACCTAAGACGAGGCG 60.203 66.667 0.00 0.00 40.65 5.52
44 45 2.202756 CGGCACCTAAGACGAGGC 60.203 66.667 0.00 0.00 40.65 4.70
45 46 0.813184 TAACGGCACCTAAGACGAGG 59.187 55.000 0.00 0.00 42.89 4.63
46 47 1.200716 TGTAACGGCACCTAAGACGAG 59.799 52.381 0.00 0.00 0.00 4.18
47 48 1.246649 TGTAACGGCACCTAAGACGA 58.753 50.000 0.00 0.00 0.00 4.20
48 49 2.190981 GATGTAACGGCACCTAAGACG 58.809 52.381 0.00 0.00 0.00 4.18
49 50 2.093869 TGGATGTAACGGCACCTAAGAC 60.094 50.000 0.00 0.00 0.00 3.01
50 51 2.093869 GTGGATGTAACGGCACCTAAGA 60.094 50.000 0.00 0.00 0.00 2.10
51 52 2.277084 GTGGATGTAACGGCACCTAAG 58.723 52.381 0.00 0.00 0.00 2.18
52 53 1.404449 CGTGGATGTAACGGCACCTAA 60.404 52.381 0.00 0.00 37.39 2.69
53 54 0.173935 CGTGGATGTAACGGCACCTA 59.826 55.000 0.00 0.00 37.39 3.08
54 55 1.079405 CGTGGATGTAACGGCACCT 60.079 57.895 0.00 0.00 37.39 4.00
55 56 0.461339 ATCGTGGATGTAACGGCACC 60.461 55.000 0.00 0.00 41.34 5.01
56 57 0.650512 CATCGTGGATGTAACGGCAC 59.349 55.000 0.00 0.00 41.34 5.01
57 58 0.533032 TCATCGTGGATGTAACGGCA 59.467 50.000 5.59 0.00 40.55 5.69
58 59 1.526887 CATCATCGTGGATGTAACGGC 59.473 52.381 5.59 0.00 40.55 5.68
59 60 1.526887 GCATCATCGTGGATGTAACGG 59.473 52.381 16.42 0.00 45.11 4.44
60 61 2.472861 GAGCATCATCGTGGATGTAACG 59.527 50.000 16.42 0.00 45.11 3.18
61 62 3.457234 TGAGCATCATCGTGGATGTAAC 58.543 45.455 16.42 10.61 42.56 2.50
62 63 3.817709 TGAGCATCATCGTGGATGTAA 57.182 42.857 16.42 4.60 42.56 2.41
75 76 1.709147 GACGGCCACATGTGAGCATC 61.709 60.000 27.46 21.55 31.99 3.91
76 77 1.746615 GACGGCCACATGTGAGCAT 60.747 57.895 27.46 18.19 35.32 3.79
77 78 2.358615 GACGGCCACATGTGAGCA 60.359 61.111 27.46 0.00 0.00 4.26
78 79 3.490759 CGACGGCCACATGTGAGC 61.491 66.667 27.46 25.00 0.00 4.26
79 80 3.490759 GCGACGGCCACATGTGAG 61.491 66.667 27.46 18.67 0.00 3.51
84 85 3.943479 TAAAGCGCGACGGCCACAT 62.943 57.895 12.10 0.00 35.02 3.21
85 86 4.666397 TAAAGCGCGACGGCCACA 62.666 61.111 12.10 0.00 35.02 4.17
86 87 3.849953 CTAAAGCGCGACGGCCAC 61.850 66.667 12.10 0.00 35.02 5.01
87 88 3.982372 CTCTAAAGCGCGACGGCCA 62.982 63.158 12.10 0.00 35.02 5.36
88 89 3.255379 CTCTAAAGCGCGACGGCC 61.255 66.667 12.10 0.00 35.02 6.13
89 90 1.349259 TTTCTCTAAAGCGCGACGGC 61.349 55.000 12.10 0.00 0.00 5.68
90 91 1.065358 TTTTCTCTAAAGCGCGACGG 58.935 50.000 12.10 0.00 0.00 4.79
91 92 2.747678 CTTTTTCTCTAAAGCGCGACG 58.252 47.619 12.10 0.00 0.00 5.12
98 99 6.226787 TCAGAGGACTGCTTTTTCTCTAAAG 58.773 40.000 0.00 0.00 43.17 1.85
99 100 6.174720 TCAGAGGACTGCTTTTTCTCTAAA 57.825 37.500 0.00 0.00 43.17 1.85
100 101 5.808366 TCAGAGGACTGCTTTTTCTCTAA 57.192 39.130 0.00 0.00 43.17 2.10
101 102 5.247110 ACATCAGAGGACTGCTTTTTCTCTA 59.753 40.000 0.00 0.00 43.17 2.43
102 103 4.041444 ACATCAGAGGACTGCTTTTTCTCT 59.959 41.667 0.00 0.00 43.17 3.10
103 104 4.322567 ACATCAGAGGACTGCTTTTTCTC 58.677 43.478 0.00 0.00 43.17 2.87
104 105 4.363991 ACATCAGAGGACTGCTTTTTCT 57.636 40.909 0.00 0.00 43.17 2.52
105 106 7.334421 TGTTATACATCAGAGGACTGCTTTTTC 59.666 37.037 0.00 0.00 43.17 2.29
106 107 7.168219 TGTTATACATCAGAGGACTGCTTTTT 58.832 34.615 0.00 0.00 43.17 1.94
107 108 6.711277 TGTTATACATCAGAGGACTGCTTTT 58.289 36.000 0.00 0.00 43.17 2.27
108 109 6.299805 TGTTATACATCAGAGGACTGCTTT 57.700 37.500 0.00 0.00 43.17 3.51
109 110 5.939764 TGTTATACATCAGAGGACTGCTT 57.060 39.130 0.00 0.00 43.17 3.91
110 111 5.939764 TTGTTATACATCAGAGGACTGCT 57.060 39.130 0.00 0.00 43.17 4.24
111 112 6.512415 GCATTTGTTATACATCAGAGGACTGC 60.512 42.308 0.00 0.00 43.17 4.40
112 113 6.539826 TGCATTTGTTATACATCAGAGGACTG 59.460 38.462 0.00 0.00 44.66 3.51
113 114 6.653020 TGCATTTGTTATACATCAGAGGACT 58.347 36.000 0.00 0.00 0.00 3.85
114 115 6.925610 TGCATTTGTTATACATCAGAGGAC 57.074 37.500 0.00 0.00 0.00 3.85
115 116 9.276590 CTAATGCATTTGTTATACATCAGAGGA 57.723 33.333 18.75 0.00 0.00 3.71
116 117 9.276590 TCTAATGCATTTGTTATACATCAGAGG 57.723 33.333 18.75 0.00 0.00 3.69
128 129 9.206870 ACATCGAAATTTTCTAATGCATTTGTT 57.793 25.926 18.75 5.36 0.00 2.83
129 130 8.761575 ACATCGAAATTTTCTAATGCATTTGT 57.238 26.923 18.75 7.94 0.00 2.83
130 131 8.323140 GGACATCGAAATTTTCTAATGCATTTG 58.677 33.333 18.75 16.01 0.00 2.32
131 132 7.220683 CGGACATCGAAATTTTCTAATGCATTT 59.779 33.333 18.75 0.00 42.43 2.32
132 133 6.692681 CGGACATCGAAATTTTCTAATGCATT 59.307 34.615 17.56 17.56 42.43 3.56
133 134 6.201517 CGGACATCGAAATTTTCTAATGCAT 58.798 36.000 15.64 0.00 42.43 3.96
134 135 5.568482 CGGACATCGAAATTTTCTAATGCA 58.432 37.500 15.64 0.00 42.43 3.96
135 136 4.437820 GCGGACATCGAAATTTTCTAATGC 59.562 41.667 15.64 10.96 42.43 3.56
136 137 5.568482 TGCGGACATCGAAATTTTCTAATG 58.432 37.500 14.75 14.75 42.43 1.90
137 138 5.811399 TGCGGACATCGAAATTTTCTAAT 57.189 34.783 7.50 0.00 42.43 1.73
138 139 5.811399 ATGCGGACATCGAAATTTTCTAA 57.189 34.783 7.50 0.00 42.43 2.10
139 140 5.584649 AGAATGCGGACATCGAAATTTTCTA 59.415 36.000 7.50 0.00 42.43 2.10
140 141 4.396166 AGAATGCGGACATCGAAATTTTCT 59.604 37.500 7.50 0.00 42.43 2.52
141 142 4.496895 CAGAATGCGGACATCGAAATTTTC 59.503 41.667 0.00 0.00 42.43 2.29
142 143 4.414852 CAGAATGCGGACATCGAAATTTT 58.585 39.130 0.00 0.00 42.43 1.82
143 144 4.019919 CAGAATGCGGACATCGAAATTT 57.980 40.909 0.00 0.00 42.43 1.82
144 145 3.680642 CAGAATGCGGACATCGAAATT 57.319 42.857 0.00 0.00 42.43 1.82
158 159 6.922247 ATTAGAGAATGACACTGCAGAATG 57.078 37.500 23.35 12.08 40.87 2.67
159 160 7.934855 AAATTAGAGAATGACACTGCAGAAT 57.065 32.000 23.35 7.55 0.00 2.40
160 161 7.360353 CGAAAATTAGAGAATGACACTGCAGAA 60.360 37.037 23.35 2.98 0.00 3.02
161 162 6.091305 CGAAAATTAGAGAATGACACTGCAGA 59.909 38.462 23.35 0.00 0.00 4.26
162 163 6.091305 TCGAAAATTAGAGAATGACACTGCAG 59.909 38.462 13.48 13.48 0.00 4.41
163 164 5.931724 TCGAAAATTAGAGAATGACACTGCA 59.068 36.000 0.00 0.00 0.00 4.41
164 165 6.408858 TCGAAAATTAGAGAATGACACTGC 57.591 37.500 0.00 0.00 0.00 4.40
179 180 9.657419 ATGGCATTTTTCTCTTATTCGAAAATT 57.343 25.926 0.00 0.00 38.48 1.82
180 181 9.657419 AATGGCATTTTTCTCTTATTCGAAAAT 57.343 25.926 6.96 0.00 38.48 1.82
181 182 9.139174 GAATGGCATTTTTCTCTTATTCGAAAA 57.861 29.630 14.93 0.00 37.35 2.29
182 183 8.522830 AGAATGGCATTTTTCTCTTATTCGAAA 58.477 29.630 14.93 0.00 0.00 3.46
183 184 8.055279 AGAATGGCATTTTTCTCTTATTCGAA 57.945 30.769 14.93 0.00 0.00 3.71
184 185 7.630242 AGAATGGCATTTTTCTCTTATTCGA 57.370 32.000 14.93 0.00 0.00 3.71
185 186 7.905031 GAGAATGGCATTTTTCTCTTATTCG 57.095 36.000 14.93 0.00 42.88 3.34
192 193 6.925165 TGAAACAAGAGAATGGCATTTTTCTC 59.075 34.615 22.99 20.60 45.30 2.87
193 194 6.819284 TGAAACAAGAGAATGGCATTTTTCT 58.181 32.000 22.99 20.40 34.95 2.52
194 195 7.307573 CCTTGAAACAAGAGAATGGCATTTTTC 60.308 37.037 14.93 17.44 0.00 2.29
195 196 6.484308 CCTTGAAACAAGAGAATGGCATTTTT 59.516 34.615 14.93 9.43 0.00 1.94
196 197 5.993441 CCTTGAAACAAGAGAATGGCATTTT 59.007 36.000 14.93 8.80 0.00 1.82
197 198 5.544650 CCTTGAAACAAGAGAATGGCATTT 58.455 37.500 14.93 4.45 0.00 2.32
198 199 4.562143 GCCTTGAAACAAGAGAATGGCATT 60.562 41.667 13.54 13.54 37.91 3.56
199 200 3.056322 GCCTTGAAACAAGAGAATGGCAT 60.056 43.478 12.25 0.00 37.91 4.40
200 201 2.297033 GCCTTGAAACAAGAGAATGGCA 59.703 45.455 12.25 0.00 37.91 4.92
201 202 2.297033 TGCCTTGAAACAAGAGAATGGC 59.703 45.455 12.25 7.83 38.42 4.40
202 203 4.021719 ACATGCCTTGAAACAAGAGAATGG 60.022 41.667 12.25 0.00 0.00 3.16
203 204 5.130292 ACATGCCTTGAAACAAGAGAATG 57.870 39.130 12.25 13.23 0.00 2.67
204 205 5.796424 AACATGCCTTGAAACAAGAGAAT 57.204 34.783 12.25 1.62 0.00 2.40
205 206 6.707440 TTAACATGCCTTGAAACAAGAGAA 57.293 33.333 12.25 0.00 0.00 2.87
206 207 6.707440 TTTAACATGCCTTGAAACAAGAGA 57.293 33.333 12.25 0.25 0.00 3.10
207 208 7.769272 TTTTTAACATGCCTTGAAACAAGAG 57.231 32.000 12.25 4.83 0.00 2.85
233 234 9.645059 CAGAGAGAATGTATGAAACTCTTAACA 57.355 33.333 0.00 0.00 37.93 2.41
234 235 9.862371 TCAGAGAGAATGTATGAAACTCTTAAC 57.138 33.333 0.00 0.00 37.93 2.01
236 237 8.194104 GCTCAGAGAGAATGTATGAAACTCTTA 58.806 37.037 0.00 0.00 37.93 2.10
237 238 7.041107 GCTCAGAGAGAATGTATGAAACTCTT 58.959 38.462 0.00 0.00 37.93 2.85
238 239 6.380846 AGCTCAGAGAGAATGTATGAAACTCT 59.619 38.462 0.00 0.00 40.05 3.24
239 240 6.572519 AGCTCAGAGAGAATGTATGAAACTC 58.427 40.000 0.00 0.00 0.00 3.01
240 241 6.543430 AGCTCAGAGAGAATGTATGAAACT 57.457 37.500 0.00 0.00 0.00 2.66
241 242 6.420604 GCTAGCTCAGAGAGAATGTATGAAAC 59.579 42.308 7.70 0.00 0.00 2.78
242 243 6.097412 TGCTAGCTCAGAGAGAATGTATGAAA 59.903 38.462 17.23 0.00 0.00 2.69
243 244 5.595952 TGCTAGCTCAGAGAGAATGTATGAA 59.404 40.000 17.23 0.00 0.00 2.57
244 245 5.136105 TGCTAGCTCAGAGAGAATGTATGA 58.864 41.667 17.23 0.00 0.00 2.15
245 246 5.450592 TGCTAGCTCAGAGAGAATGTATG 57.549 43.478 17.23 0.00 0.00 2.39
246 247 6.669125 AATGCTAGCTCAGAGAGAATGTAT 57.331 37.500 17.23 0.00 0.00 2.29
247 248 6.477053 AAATGCTAGCTCAGAGAGAATGTA 57.523 37.500 17.23 0.00 0.00 2.29
248 249 5.356291 AAATGCTAGCTCAGAGAGAATGT 57.644 39.130 17.23 0.00 0.00 2.71
249 250 5.236911 GGAAAATGCTAGCTCAGAGAGAATG 59.763 44.000 17.23 0.00 0.00 2.67
250 251 5.367302 GGAAAATGCTAGCTCAGAGAGAAT 58.633 41.667 17.23 0.00 0.00 2.40
251 252 4.383552 GGGAAAATGCTAGCTCAGAGAGAA 60.384 45.833 17.23 0.00 0.00 2.87
252 253 3.133721 GGGAAAATGCTAGCTCAGAGAGA 59.866 47.826 17.23 0.00 0.00 3.10
253 254 3.134442 AGGGAAAATGCTAGCTCAGAGAG 59.866 47.826 17.23 0.00 0.00 3.20
254 255 3.110705 AGGGAAAATGCTAGCTCAGAGA 58.889 45.455 17.23 0.00 0.00 3.10
255 256 3.204526 CAGGGAAAATGCTAGCTCAGAG 58.795 50.000 17.23 0.00 0.00 3.35
256 257 2.681976 GCAGGGAAAATGCTAGCTCAGA 60.682 50.000 17.23 0.00 40.59 3.27
257 258 1.674962 GCAGGGAAAATGCTAGCTCAG 59.325 52.381 17.23 0.62 40.59 3.35
258 259 1.755179 GCAGGGAAAATGCTAGCTCA 58.245 50.000 17.23 0.00 40.59 4.26
355 358 3.928375 CCTCGGAAATTTGGAATTTGCAG 59.072 43.478 14.88 11.37 31.05 4.41
418 422 2.966309 GCTGTTCCTCGGTTTGGCG 61.966 63.158 0.00 0.00 0.00 5.69
435 439 2.716814 CATGAAGGCATGGAGAGGC 58.283 57.895 0.00 0.00 46.45 4.70
449 453 1.687840 CCCCCGTACCAGTCCATGA 60.688 63.158 0.00 0.00 0.00 3.07
456 460 1.455959 CCTCTCTCCCCCGTACCAG 60.456 68.421 0.00 0.00 0.00 4.00
457 461 1.512201 TTCCTCTCTCCCCCGTACCA 61.512 60.000 0.00 0.00 0.00 3.25
499 506 4.096816 TCTGCCGGGTCCCCCATA 62.097 66.667 2.18 0.00 45.83 2.74
608 629 0.617820 GAGTCTGAGGGGGTAGCCAA 60.618 60.000 14.06 0.00 0.00 4.52
719 740 1.433064 CTCTCACGCAGAGGCTCTC 59.567 63.158 15.60 8.85 44.75 3.20
730 757 1.016627 CTCTCTGCCTCTCTCTCACG 58.983 60.000 0.00 0.00 0.00 4.35
742 769 1.032014 CTCCTACTGCCTCTCTCTGC 58.968 60.000 0.00 0.00 0.00 4.26
753 780 0.814410 TCGGCGAGCTACTCCTACTG 60.814 60.000 4.99 0.00 0.00 2.74
770 797 1.008309 GGGCTAGTAGCTTCGCTCG 60.008 63.158 21.20 0.00 41.99 5.03
772 799 3.121019 CGGGCTAGTAGCTTCGCT 58.879 61.111 21.20 0.00 41.99 4.93
915 954 0.467384 CTGGCTAGCTATGCTGTGGT 59.533 55.000 15.72 0.00 40.10 4.16
916 955 0.883814 GCTGGCTAGCTATGCTGTGG 60.884 60.000 15.78 0.00 46.57 4.17
917 956 2.614581 GCTGGCTAGCTATGCTGTG 58.385 57.895 15.78 0.00 46.57 3.66
927 966 1.620822 AAAACCCTTGTGCTGGCTAG 58.379 50.000 0.00 0.00 0.00 3.42
928 967 2.080654 AAAAACCCTTGTGCTGGCTA 57.919 45.000 0.00 0.00 0.00 3.93
929 968 1.686587 GTAAAAACCCTTGTGCTGGCT 59.313 47.619 0.00 0.00 0.00 4.75
930 969 1.601914 CGTAAAAACCCTTGTGCTGGC 60.602 52.381 0.00 0.00 0.00 4.85
934 973 1.922880 GCGTCGTAAAAACCCTTGTGC 60.923 52.381 0.00 0.00 0.00 4.57
983 1025 0.709992 CATTTTTCCCCCTCCCCTCA 59.290 55.000 0.00 0.00 0.00 3.86
1178 1223 1.933181 GGCAAGAACAAGTTTGGTTGC 59.067 47.619 15.03 15.03 40.11 4.17
1180 1225 3.365472 AGAGGCAAGAACAAGTTTGGTT 58.635 40.909 0.00 0.00 0.00 3.67
1185 1230 7.454225 ACTAATAAGAGAGGCAAGAACAAGTT 58.546 34.615 0.00 0.00 0.00 2.66
1186 1231 7.010339 ACTAATAAGAGAGGCAAGAACAAGT 57.990 36.000 0.00 0.00 0.00 3.16
1189 1248 6.665680 AGAGACTAATAAGAGAGGCAAGAACA 59.334 38.462 0.00 0.00 0.00 3.18
1190 1249 7.107639 AGAGACTAATAAGAGAGGCAAGAAC 57.892 40.000 0.00 0.00 0.00 3.01
1192 1251 5.830991 GGAGAGACTAATAAGAGAGGCAAGA 59.169 44.000 0.00 0.00 0.00 3.02
1197 1256 3.504520 GGCGGAGAGACTAATAAGAGAGG 59.495 52.174 0.00 0.00 0.00 3.69
1198 1257 3.187637 CGGCGGAGAGACTAATAAGAGAG 59.812 52.174 0.00 0.00 0.00 3.20
1199 1258 3.139850 CGGCGGAGAGACTAATAAGAGA 58.860 50.000 0.00 0.00 0.00 3.10
1200 1262 2.350964 GCGGCGGAGAGACTAATAAGAG 60.351 54.545 9.78 0.00 0.00 2.85
1202 1264 1.336056 GGCGGCGGAGAGACTAATAAG 60.336 57.143 9.78 0.00 0.00 1.73
1210 1272 3.515286 CTTACGGCGGCGGAGAGA 61.515 66.667 35.05 11.70 0.00 3.10
1214 1276 4.884257 GATGCTTACGGCGGCGGA 62.884 66.667 35.05 26.63 45.43 5.54
1226 1288 1.016130 CGGCGTGTTTCTCTGATGCT 61.016 55.000 0.00 0.00 0.00 3.79
1229 1291 1.741770 GGCGGCGTGTTTCTCTGAT 60.742 57.895 9.37 0.00 0.00 2.90
1231 1293 1.577328 ATTGGCGGCGTGTTTCTCTG 61.577 55.000 9.37 0.00 0.00 3.35
1232 1294 1.298859 GATTGGCGGCGTGTTTCTCT 61.299 55.000 9.37 0.00 0.00 3.10
1233 1295 1.134694 GATTGGCGGCGTGTTTCTC 59.865 57.895 9.37 0.00 0.00 2.87
1234 1296 0.036765 TAGATTGGCGGCGTGTTTCT 60.037 50.000 9.37 9.09 0.00 2.52
1235 1297 1.003866 GATAGATTGGCGGCGTGTTTC 60.004 52.381 9.37 1.18 0.00 2.78
1236 1298 1.014352 GATAGATTGGCGGCGTGTTT 58.986 50.000 9.37 0.00 0.00 2.83
1237 1299 0.107897 TGATAGATTGGCGGCGTGTT 60.108 50.000 9.37 0.00 0.00 3.32
1238 1300 0.106708 ATGATAGATTGGCGGCGTGT 59.893 50.000 9.37 0.00 0.00 4.49
1240 1302 1.230635 GCATGATAGATTGGCGGCGT 61.231 55.000 9.37 0.00 0.00 5.68
1246 1308 3.314357 CACTGTGGTGCATGATAGATTGG 59.686 47.826 0.00 0.00 36.61 3.16
1249 1311 3.204306 CCACTGTGGTGCATGATAGAT 57.796 47.619 18.76 0.00 41.75 1.98
1261 1323 3.964875 GTGCGCCAACCACTGTGG 61.965 66.667 24.80 24.80 45.02 4.17
1267 1329 1.302591 TTAATCGGTGCGCCAACCA 60.303 52.632 18.18 4.92 40.53 3.67
1270 1332 1.198178 GAAAGTTAATCGGTGCGCCAA 59.802 47.619 18.18 0.00 34.09 4.52
1275 1337 7.693952 TGAATCAATAGAAAGTTAATCGGTGC 58.306 34.615 0.00 0.00 0.00 5.01
1276 1338 9.869844 GATGAATCAATAGAAAGTTAATCGGTG 57.130 33.333 0.00 0.00 0.00 4.94
1277 1339 9.057089 GGATGAATCAATAGAAAGTTAATCGGT 57.943 33.333 0.00 0.00 0.00 4.69
1278 1340 9.277783 AGGATGAATCAATAGAAAGTTAATCGG 57.722 33.333 0.00 0.00 0.00 4.18
1280 1342 9.890352 GCAGGATGAATCAATAGAAAGTTAATC 57.110 33.333 0.00 0.00 39.69 1.75
1281 1343 9.638176 AGCAGGATGAATCAATAGAAAGTTAAT 57.362 29.630 0.00 0.00 39.69 1.40
1284 1346 6.545298 GGAGCAGGATGAATCAATAGAAAGTT 59.455 38.462 0.00 0.00 39.69 2.66
1286 1348 6.297582 AGGAGCAGGATGAATCAATAGAAAG 58.702 40.000 0.00 0.00 39.69 2.62
1288 1350 5.901413 AGGAGCAGGATGAATCAATAGAA 57.099 39.130 0.00 0.00 39.69 2.10
1289 1351 5.483231 CCTAGGAGCAGGATGAATCAATAGA 59.517 44.000 1.05 0.00 39.69 1.98
1290 1352 5.732633 CCTAGGAGCAGGATGAATCAATAG 58.267 45.833 1.05 0.00 39.69 1.73
1300 1383 2.136878 CACCGCCTAGGAGCAGGAT 61.137 63.158 14.75 0.00 45.00 3.24
1376 1459 4.762289 AGTGGTAATAAGAGGAGCAAGG 57.238 45.455 0.00 0.00 0.00 3.61
1377 1460 7.600752 GCTAATAGTGGTAATAAGAGGAGCAAG 59.399 40.741 0.00 0.00 0.00 4.01
1378 1461 7.442656 GCTAATAGTGGTAATAAGAGGAGCAA 58.557 38.462 0.00 0.00 0.00 3.91
1379 1462 6.014499 GGCTAATAGTGGTAATAAGAGGAGCA 60.014 42.308 0.00 0.00 0.00 4.26
1380 1463 6.211785 AGGCTAATAGTGGTAATAAGAGGAGC 59.788 42.308 0.00 0.00 0.00 4.70
1381 1464 7.451877 TCAGGCTAATAGTGGTAATAAGAGGAG 59.548 40.741 0.00 0.00 0.00 3.69
1382 1465 7.302948 TCAGGCTAATAGTGGTAATAAGAGGA 58.697 38.462 0.00 0.00 0.00 3.71
1383 1466 7.540474 TCAGGCTAATAGTGGTAATAAGAGG 57.460 40.000 0.00 0.00 0.00 3.69
1384 1467 9.429359 CAATCAGGCTAATAGTGGTAATAAGAG 57.571 37.037 0.00 0.00 0.00 2.85
1389 1472 7.667219 CCAATCAATCAGGCTAATAGTGGTAAT 59.333 37.037 0.00 0.00 0.00 1.89
1394 1477 6.992123 TGTACCAATCAATCAGGCTAATAGTG 59.008 38.462 0.00 0.00 0.00 2.74
1406 1489 4.832248 TGTCCTGACTGTACCAATCAATC 58.168 43.478 0.00 0.00 0.00 2.67
1421 1504 1.344438 GCCCGATCACATATGTCCTGA 59.656 52.381 5.07 0.80 0.00 3.86
1422 1505 1.609061 GGCCCGATCACATATGTCCTG 60.609 57.143 5.07 0.00 0.00 3.86
1423 1506 0.687354 GGCCCGATCACATATGTCCT 59.313 55.000 5.07 0.00 0.00 3.85
1424 1507 0.670546 CGGCCCGATCACATATGTCC 60.671 60.000 5.07 1.30 0.00 4.02
1425 1508 0.670546 CCGGCCCGATCACATATGTC 60.671 60.000 3.71 0.00 0.00 3.06
1427 1510 2.034879 GCCGGCCCGATCACATATG 61.035 63.158 18.11 0.00 0.00 1.78
1428 1511 2.347490 GCCGGCCCGATCACATAT 59.653 61.111 18.11 0.00 0.00 1.78
1703 1797 3.330405 TGGTGGTATGGATATGGATGGTG 59.670 47.826 0.00 0.00 0.00 4.17
1822 1916 3.637273 GGCGGAGGAACTGTGGGT 61.637 66.667 0.00 0.00 41.55 4.51
1869 1963 2.606519 TCCTCACTCGGGTTGGGG 60.607 66.667 4.58 1.26 0.00 4.96
1873 1967 1.305381 CCTCCTCCTCACTCGGGTT 60.305 63.158 0.00 0.00 0.00 4.11
1875 1969 2.443016 CCCTCCTCCTCACTCGGG 60.443 72.222 0.00 0.00 0.00 5.14
1877 1971 2.055042 CCACCCTCCTCCTCACTCG 61.055 68.421 0.00 0.00 0.00 4.18
1878 1972 1.079438 ACCACCCTCCTCCTCACTC 59.921 63.158 0.00 0.00 0.00 3.51
1879 1973 1.229336 CACCACCCTCCTCCTCACT 60.229 63.158 0.00 0.00 0.00 3.41
1880 1974 1.229209 TCACCACCCTCCTCCTCAC 60.229 63.158 0.00 0.00 0.00 3.51
1881 1975 1.079256 CTCACCACCCTCCTCCTCA 59.921 63.158 0.00 0.00 0.00 3.86
1882 1976 0.686112 CTCTCACCACCCTCCTCCTC 60.686 65.000 0.00 0.00 0.00 3.71
1883 1977 1.149782 TCTCTCACCACCCTCCTCCT 61.150 60.000 0.00 0.00 0.00 3.69
1884 1978 0.973496 GTCTCTCACCACCCTCCTCC 60.973 65.000 0.00 0.00 0.00 4.30
1920 2014 0.692756 CTCCTCCCCTTTCCTCCCTC 60.693 65.000 0.00 0.00 0.00 4.30
1921 2015 1.398234 CTCCTCCCCTTTCCTCCCT 59.602 63.158 0.00 0.00 0.00 4.20
1922 2016 1.694525 CCTCCTCCCCTTTCCTCCC 60.695 68.421 0.00 0.00 0.00 4.30
1923 2017 1.694525 CCCTCCTCCCCTTTCCTCC 60.695 68.421 0.00 0.00 0.00 4.30
1924 2018 1.694525 CCCCTCCTCCCCTTTCCTC 60.695 68.421 0.00 0.00 0.00 3.71
1925 2019 1.550480 ATCCCCTCCTCCCCTTTCCT 61.550 60.000 0.00 0.00 0.00 3.36
1926 2020 1.006227 ATCCCCTCCTCCCCTTTCC 59.994 63.158 0.00 0.00 0.00 3.13
1927 2021 1.356494 CCATCCCCTCCTCCCCTTTC 61.356 65.000 0.00 0.00 0.00 2.62
1985 2083 4.547367 GCCTGGGCGCGGTAGATT 62.547 66.667 8.83 0.00 0.00 2.40
2119 2217 1.510480 GCTCCCGGCATAATCACAGC 61.510 60.000 0.00 0.00 41.35 4.40
2141 2239 2.764547 CCTCCCCTCTCCCCGTTC 60.765 72.222 0.00 0.00 0.00 3.95
2142 2240 4.416601 CCCTCCCCTCTCCCCGTT 62.417 72.222 0.00 0.00 0.00 4.44
2145 2243 4.825679 CCACCCTCCCCTCTCCCC 62.826 77.778 0.00 0.00 0.00 4.81
2146 2244 4.825679 CCCACCCTCCCCTCTCCC 62.826 77.778 0.00 0.00 0.00 4.30
2147 2245 2.190904 TTACCCACCCTCCCCTCTCC 62.191 65.000 0.00 0.00 0.00 3.71
2148 2246 0.253020 TTTACCCACCCTCCCCTCTC 60.253 60.000 0.00 0.00 0.00 3.20
2149 2247 0.197661 TTTTACCCACCCTCCCCTCT 59.802 55.000 0.00 0.00 0.00 3.69
2150 2248 0.330604 GTTTTACCCACCCTCCCCTC 59.669 60.000 0.00 0.00 0.00 4.30
2151 2249 1.494716 CGTTTTACCCACCCTCCCCT 61.495 60.000 0.00 0.00 0.00 4.79
2152 2250 1.001764 CGTTTTACCCACCCTCCCC 60.002 63.158 0.00 0.00 0.00 4.81
2214 2324 1.301401 TCCTCGCCCAAAAGACACG 60.301 57.895 0.00 0.00 0.00 4.49
2215 2325 1.235281 GGTCCTCGCCCAAAAGACAC 61.235 60.000 0.00 0.00 0.00 3.67
2216 2326 1.072505 GGTCCTCGCCCAAAAGACA 59.927 57.895 0.00 0.00 0.00 3.41
2217 2327 0.536460 TTGGTCCTCGCCCAAAAGAC 60.536 55.000 0.00 0.00 38.98 3.01
2341 2456 0.725117 CGTGAGGGCGTTGTTAATCC 59.275 55.000 0.00 0.00 0.00 3.01
2376 2491 8.919661 CATCATACTACTATGTTGTGTAGCATG 58.080 37.037 0.00 0.00 39.80 4.06
2390 2505 7.399191 ACAAGTCCCAAACTCATCATACTACTA 59.601 37.037 0.00 0.00 37.17 1.82
2391 2506 6.213600 ACAAGTCCCAAACTCATCATACTACT 59.786 38.462 0.00 0.00 37.17 2.57
2398 2522 2.441375 TCCACAAGTCCCAAACTCATCA 59.559 45.455 0.00 0.00 37.17 3.07
2399 2523 3.140325 TCCACAAGTCCCAAACTCATC 57.860 47.619 0.00 0.00 37.17 2.92
2430 2554 9.369904 TGAAACCGTATATCTGTTTTACTAACC 57.630 33.333 0.00 0.00 34.53 2.85
2435 2559 9.058424 GCTTTTGAAACCGTATATCTGTTTTAC 57.942 33.333 0.00 0.00 34.53 2.01
2436 2560 8.784994 TGCTTTTGAAACCGTATATCTGTTTTA 58.215 29.630 0.00 0.00 34.53 1.52
2443 2567 6.781138 TGTCATGCTTTTGAAACCGTATATC 58.219 36.000 0.00 0.00 0.00 1.63
2445 2569 5.391523 GCTGTCATGCTTTTGAAACCGTATA 60.392 40.000 0.00 0.00 0.00 1.47
2446 2570 4.615912 GCTGTCATGCTTTTGAAACCGTAT 60.616 41.667 0.00 0.00 0.00 3.06
2449 2573 2.053627 GCTGTCATGCTTTTGAAACCG 58.946 47.619 0.00 0.00 0.00 4.44
2469 2593 3.269178 GGCTGAGGAGAGAATCAAAGTG 58.731 50.000 0.00 0.00 37.82 3.16
2497 2621 5.912396 CACGCAGCTTAATTAGTGAAAACAA 59.088 36.000 0.00 0.00 0.00 2.83
2500 2624 5.933187 TCACGCAGCTTAATTAGTGAAAA 57.067 34.783 1.64 0.00 35.94 2.29
2516 2640 5.061560 GTGAAAAACAGAACAAATTCACGCA 59.938 36.000 0.00 0.00 37.84 5.24
2518 2642 6.526325 TGAGTGAAAAACAGAACAAATTCACG 59.474 34.615 9.88 0.00 46.80 4.35
2554 2678 5.401531 AGCACGGTTTAATTAGTGAGAGA 57.598 39.130 6.74 0.00 36.79 3.10
2557 2681 6.312918 ACATGTAGCACGGTTTAATTAGTGAG 59.687 38.462 0.00 0.00 36.79 3.51
2569 2693 3.930848 GCTTAGTAAACATGTAGCACGGT 59.069 43.478 10.47 0.00 0.00 4.83
2571 2695 5.120208 ACAAGCTTAGTAAACATGTAGCACG 59.880 40.000 16.25 9.86 0.00 5.34
2574 2698 8.252964 AGTAACAAGCTTAGTAAACATGTAGC 57.747 34.615 7.78 7.78 0.00 3.58
2628 2752 9.742144 ACTCTCTCTAATGTGTCTTTACTCTTA 57.258 33.333 0.00 0.00 0.00 2.10
2630 2754 8.644374 AACTCTCTCTAATGTGTCTTTACTCT 57.356 34.615 0.00 0.00 0.00 3.24
2632 2756 8.644374 AGAACTCTCTCTAATGTGTCTTTACT 57.356 34.615 0.00 0.00 0.00 2.24
2633 2757 7.971722 GGAGAACTCTCTCTAATGTGTCTTTAC 59.028 40.741 6.68 0.00 46.45 2.01
2635 2759 6.349777 CGGAGAACTCTCTCTAATGTGTCTTT 60.350 42.308 6.68 0.00 46.45 2.52
2636 2760 5.124776 CGGAGAACTCTCTCTAATGTGTCTT 59.875 44.000 6.68 0.00 46.45 3.01
2640 2764 3.067461 CCCGGAGAACTCTCTCTAATGTG 59.933 52.174 0.73 0.00 46.45 3.21
2642 2766 2.625790 CCCCGGAGAACTCTCTCTAATG 59.374 54.545 0.73 0.00 46.45 1.90
2643 2767 2.245287 ACCCCGGAGAACTCTCTCTAAT 59.755 50.000 0.73 0.00 46.45 1.73
2644 2768 1.639628 ACCCCGGAGAACTCTCTCTAA 59.360 52.381 0.73 0.00 46.45 2.10
2645 2769 1.296984 ACCCCGGAGAACTCTCTCTA 58.703 55.000 0.73 0.00 46.45 2.43
2646 2770 0.410270 AACCCCGGAGAACTCTCTCT 59.590 55.000 0.73 0.00 46.45 3.10
2669 2811 1.740297 TAACGCACACACAAACCAGT 58.260 45.000 0.00 0.00 0.00 4.00
2670 2812 3.042189 CAATAACGCACACACAAACCAG 58.958 45.455 0.00 0.00 0.00 4.00
2672 2814 2.223618 ACCAATAACGCACACACAAACC 60.224 45.455 0.00 0.00 0.00 3.27
2956 3106 0.116143 CTCCCCCAACCCAATCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
2958 3108 1.151474 TCTCCCCCAACCCAATCCA 60.151 57.895 0.00 0.00 0.00 3.41
2959 3109 1.306633 GTCTCCCCCAACCCAATCC 59.693 63.158 0.00 0.00 0.00 3.01
2960 3110 1.306633 GGTCTCCCCCAACCCAATC 59.693 63.158 0.00 0.00 0.00 2.67
2961 3111 3.520550 GGTCTCCCCCAACCCAAT 58.479 61.111 0.00 0.00 0.00 3.16
3059 3245 6.234723 TGTCTCTCGATCGATCTTTCTATG 57.765 41.667 19.78 3.46 0.00 2.23
3063 3250 5.356882 AGATGTCTCTCGATCGATCTTTC 57.643 43.478 19.78 10.86 0.00 2.62
3164 3369 3.231889 ATAGCCGCGGATGCTCCTG 62.232 63.158 33.48 0.00 40.23 3.86
3241 3446 5.941555 AGAAAAAGACGAGAGGGATATGT 57.058 39.130 0.00 0.00 0.00 2.29
3244 3449 5.411669 GCAAAAGAAAAAGACGAGAGGGATA 59.588 40.000 0.00 0.00 0.00 2.59
3255 3460 5.505654 CGTAGGAAGCTGCAAAAGAAAAAGA 60.506 40.000 1.02 0.00 0.00 2.52
3338 3543 8.046107 AGAAGAGGAAGTGGATTAAAGATGAAG 58.954 37.037 0.00 0.00 0.00 3.02
3351 3556 4.161377 AGCTAAGCTAAGAAGAGGAAGTGG 59.839 45.833 0.00 0.00 36.99 4.00
3375 3580 2.743538 CTTGCACGCTGCTGGCTA 60.744 61.111 12.45 5.44 45.31 3.93
3376 3581 4.631247 TCTTGCACGCTGCTGGCT 62.631 61.111 12.45 0.00 45.31 4.75
3377 3582 4.099170 CTCTTGCACGCTGCTGGC 62.099 66.667 10.54 1.47 45.31 4.85
3378 3583 0.950555 TTACTCTTGCACGCTGCTGG 60.951 55.000 10.54 4.71 45.31 4.85
3379 3584 0.441533 CTTACTCTTGCACGCTGCTG 59.558 55.000 10.54 0.00 45.31 4.41
3380 3585 0.318441 TCTTACTCTTGCACGCTGCT 59.682 50.000 10.54 0.00 45.31 4.24
3381 3586 1.363744 ATCTTACTCTTGCACGCTGC 58.636 50.000 0.00 3.44 45.29 5.25
3382 3587 5.530519 TTTAATCTTACTCTTGCACGCTG 57.469 39.130 0.00 0.00 0.00 5.18
3383 3588 6.743575 AATTTAATCTTACTCTTGCACGCT 57.256 33.333 0.00 0.00 0.00 5.07
3384 3589 7.685594 ACTAATTTAATCTTACTCTTGCACGC 58.314 34.615 0.00 0.00 0.00 5.34
3428 3636 2.910482 CGATTGTCTGCAAATCAAACGG 59.090 45.455 14.86 3.41 38.21 4.44
3451 3659 1.179152 CATGGCCAGCTTGAATCACA 58.821 50.000 13.05 0.00 0.00 3.58
3487 3695 2.289382 TGCACTTACGATCTTGCAGGAA 60.289 45.455 1.33 0.00 40.01 3.36
3509 3717 1.169661 TGAAATTTGCGAGGGTGCGT 61.170 50.000 0.00 0.00 37.81 5.24
4528 4765 4.926832 ACAAAAAGTGGGAACAAGAAAACG 59.073 37.500 0.00 0.00 46.06 3.60
4566 4803 2.706339 AGAGCTTGAACATAGCCTGG 57.294 50.000 0.00 0.00 39.47 4.45
4567 4804 6.116680 CTAAAAGAGCTTGAACATAGCCTG 57.883 41.667 0.00 0.00 39.47 4.85
4593 4830 1.946768 CGAAGCAAACTCCAAACCTGA 59.053 47.619 0.00 0.00 0.00 3.86
4801 5039 5.534654 AGCGTATTATTGGGTGTTGCATATT 59.465 36.000 0.00 0.00 0.00 1.28
4993 5238 6.038161 CACACATAAGAACTGAAACAGTCCAA 59.962 38.462 4.88 0.00 44.62 3.53
4998 5243 6.082338 GCATCACACATAAGAACTGAAACAG 58.918 40.000 0.00 0.00 37.52 3.16
5000 5245 6.000891 TGCATCACACATAAGAACTGAAAC 57.999 37.500 0.00 0.00 0.00 2.78
5039 5284 0.953727 ACATTTCAGCGAGCAAAGCA 59.046 45.000 0.00 0.00 37.01 3.91
5040 5285 1.611043 GACATTTCAGCGAGCAAAGC 58.389 50.000 0.00 0.00 0.00 3.51
5041 5286 1.195448 ACGACATTTCAGCGAGCAAAG 59.805 47.619 0.00 0.00 0.00 2.77
5048 5296 2.333926 TGTAGGAACGACATTTCAGCG 58.666 47.619 0.00 0.00 39.46 5.18
5096 5344 2.798499 CGGCACATACTGGCAGTAGTAC 60.798 54.545 29.14 20.51 46.10 2.73
5132 5380 1.006086 CGATGCCAAGCGTGTAATCA 58.994 50.000 10.74 0.04 0.00 2.57
5175 5424 1.132643 GCGACGTCTCATGAAGGTAGT 59.867 52.381 14.70 0.00 0.00 2.73
5202 5451 9.442047 CACTCCAACTTCTTACTAATCATTTCT 57.558 33.333 0.00 0.00 0.00 2.52
5214 5463 3.135712 TCCTTGCACACTCCAACTTCTTA 59.864 43.478 0.00 0.00 0.00 2.10
5267 5516 1.615384 CCAGCTCCTTTCCTCCCTTTG 60.615 57.143 0.00 0.00 0.00 2.77
5411 5707 0.682852 TTCTTCCATCCGTGAACCGT 59.317 50.000 0.00 0.00 33.66 4.83
5418 5714 4.556699 CGCTTTTCTTTTTCTTCCATCCGT 60.557 41.667 0.00 0.00 0.00 4.69
5419 5715 3.914364 CGCTTTTCTTTTTCTTCCATCCG 59.086 43.478 0.00 0.00 0.00 4.18
5420 5716 4.871513 ACGCTTTTCTTTTTCTTCCATCC 58.128 39.130 0.00 0.00 0.00 3.51
5423 5719 4.638421 TCTGACGCTTTTCTTTTTCTTCCA 59.362 37.500 0.00 0.00 0.00 3.53
5432 5728 5.453480 GGGGAGTATATCTGACGCTTTTCTT 60.453 44.000 0.00 0.00 0.00 2.52
5434 5730 4.308265 GGGGAGTATATCTGACGCTTTTC 58.692 47.826 0.00 0.00 0.00 2.29
5439 5735 1.245732 ACGGGGAGTATATCTGACGC 58.754 55.000 0.00 0.00 0.00 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.