Multiple sequence alignment - TraesCS3D01G321500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G321500 chr3D 100.000 1796 0 0 946 2741 434210827 434212622 0.000000e+00 3317.0
1 TraesCS3D01G321500 chr3D 100.000 610 0 0 1 610 434209882 434210491 0.000000e+00 1127.0
2 TraesCS3D01G321500 chr3D 97.059 34 1 0 147 180 18497303 18497270 1.060000e-04 58.4
3 TraesCS3D01G321500 chr3A 94.066 1820 55 27 946 2741 573112395 573114185 0.000000e+00 2713.0
4 TraesCS3D01G321500 chr3A 85.714 98 14 0 513 610 573112067 573112164 1.340000e-18 104.0
5 TraesCS3D01G321500 chr3B 94.897 1117 38 5 946 2058 567806942 567808043 0.000000e+00 1729.0
6 TraesCS3D01G321500 chr3B 94.310 703 19 10 2055 2741 567808312 567809009 0.000000e+00 1057.0
7 TraesCS3D01G321500 chr1A 78.737 475 76 14 1037 1505 505925905 505925450 7.420000e-76 294.0
8 TraesCS3D01G321500 chr1D 75.501 649 105 29 1037 1675 410072109 410071505 4.500000e-68 268.0
9 TraesCS3D01G321500 chr6D 88.889 54 4 2 143 195 299890408 299890356 6.340000e-07 65.8
10 TraesCS3D01G321500 chr6D 96.875 32 1 0 150 181 368780317 368780348 1.000000e-03 54.7
11 TraesCS3D01G321500 chr1B 97.059 34 1 0 147 180 594490111 594490144 1.060000e-04 58.4
12 TraesCS3D01G321500 chrUn 96.970 33 1 0 147 179 364167455 364167487 3.810000e-04 56.5
13 TraesCS3D01G321500 chr7D 94.444 36 2 0 143 178 18804160 18804125 3.810000e-04 56.5
14 TraesCS3D01G321500 chr7A 96.970 33 1 0 147 179 277232459 277232427 3.810000e-04 56.5
15 TraesCS3D01G321500 chr5B 94.595 37 1 1 147 182 339099837 339099801 3.810000e-04 56.5
16 TraesCS3D01G321500 chr2D 96.970 33 1 0 147 179 422773744 422773712 3.810000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G321500 chr3D 434209882 434212622 2740 False 2222.0 3317 100.0000 1 2741 2 chr3D.!!$F1 2740
1 TraesCS3D01G321500 chr3A 573112067 573114185 2118 False 1408.5 2713 89.8900 513 2741 2 chr3A.!!$F1 2228
2 TraesCS3D01G321500 chr3B 567806942 567809009 2067 False 1393.0 1729 94.6035 946 2741 2 chr3B.!!$F1 1795
3 TraesCS3D01G321500 chr1D 410071505 410072109 604 True 268.0 268 75.5010 1037 1675 1 chr1D.!!$R1 638

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
502 503 0.034477 AATGACCGGCAAACTAGGGG 60.034 55.0 0.0 0.0 0.0 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2187 2483 0.529833 CAGCATCAGGTCAGTCGAGT 59.47 55.0 0.0 0.0 0.0 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 5.519722 CAAAAGTGCTTCCTAAACATTCGT 58.480 37.500 0.00 0.00 0.00 3.85
31 32 5.358298 AAAGTGCTTCCTAAACATTCGTC 57.642 39.130 0.00 0.00 0.00 4.20
32 33 4.002906 AGTGCTTCCTAAACATTCGTCA 57.997 40.909 0.00 0.00 0.00 4.35
33 34 4.385825 AGTGCTTCCTAAACATTCGTCAA 58.614 39.130 0.00 0.00 0.00 3.18
34 35 5.003804 AGTGCTTCCTAAACATTCGTCAAT 58.996 37.500 0.00 0.00 0.00 2.57
35 36 6.170506 AGTGCTTCCTAAACATTCGTCAATA 58.829 36.000 0.00 0.00 0.00 1.90
36 37 6.092259 AGTGCTTCCTAAACATTCGTCAATAC 59.908 38.462 0.00 0.00 0.00 1.89
37 38 5.935206 TGCTTCCTAAACATTCGTCAATACA 59.065 36.000 0.00 0.00 0.00 2.29
38 39 6.428465 TGCTTCCTAAACATTCGTCAATACAA 59.572 34.615 0.00 0.00 0.00 2.41
39 40 6.741358 GCTTCCTAAACATTCGTCAATACAAC 59.259 38.462 0.00 0.00 0.00 3.32
40 41 7.572353 GCTTCCTAAACATTCGTCAATACAACA 60.572 37.037 0.00 0.00 0.00 3.33
41 42 7.915293 TCCTAAACATTCGTCAATACAACAT 57.085 32.000 0.00 0.00 0.00 2.71
42 43 8.330466 TCCTAAACATTCGTCAATACAACATT 57.670 30.769 0.00 0.00 0.00 2.71
43 44 9.438228 TCCTAAACATTCGTCAATACAACATTA 57.562 29.630 0.00 0.00 0.00 1.90
44 45 9.485591 CCTAAACATTCGTCAATACAACATTAC 57.514 33.333 0.00 0.00 0.00 1.89
46 47 8.948853 AAACATTCGTCAATACAACATTACAG 57.051 30.769 0.00 0.00 0.00 2.74
47 48 7.072177 ACATTCGTCAATACAACATTACAGG 57.928 36.000 0.00 0.00 0.00 4.00
48 49 6.653320 ACATTCGTCAATACAACATTACAGGT 59.347 34.615 0.00 0.00 0.00 4.00
49 50 6.474819 TTCGTCAATACAACATTACAGGTG 57.525 37.500 0.00 0.00 0.00 4.00
50 51 5.785243 TCGTCAATACAACATTACAGGTGA 58.215 37.500 0.00 0.00 0.00 4.02
51 52 6.224584 TCGTCAATACAACATTACAGGTGAA 58.775 36.000 0.00 0.00 0.00 3.18
52 53 6.706716 TCGTCAATACAACATTACAGGTGAAA 59.293 34.615 0.00 0.00 0.00 2.69
53 54 7.015289 CGTCAATACAACATTACAGGTGAAAG 58.985 38.462 0.00 0.00 0.00 2.62
54 55 7.305474 GTCAATACAACATTACAGGTGAAAGG 58.695 38.462 0.00 0.00 0.00 3.11
55 56 7.001674 TCAATACAACATTACAGGTGAAAGGT 58.998 34.615 0.00 0.00 0.00 3.50
56 57 8.158132 TCAATACAACATTACAGGTGAAAGGTA 58.842 33.333 0.00 0.00 0.00 3.08
57 58 8.788806 CAATACAACATTACAGGTGAAAGGTAA 58.211 33.333 0.00 0.00 0.00 2.85
58 59 6.628919 ACAACATTACAGGTGAAAGGTAAC 57.371 37.500 0.00 0.00 30.57 2.50
59 60 6.123651 ACAACATTACAGGTGAAAGGTAACA 58.876 36.000 0.00 0.00 41.41 2.41
60 61 6.603997 ACAACATTACAGGTGAAAGGTAACAA 59.396 34.615 0.00 0.00 41.41 2.83
61 62 6.628919 ACATTACAGGTGAAAGGTAACAAC 57.371 37.500 0.00 0.00 41.41 3.32
62 63 6.123651 ACATTACAGGTGAAAGGTAACAACA 58.876 36.000 0.00 0.00 41.41 3.33
63 64 6.775629 ACATTACAGGTGAAAGGTAACAACAT 59.224 34.615 0.00 0.00 41.41 2.71
64 65 7.286775 ACATTACAGGTGAAAGGTAACAACATT 59.713 33.333 0.00 0.00 41.41 2.71
65 66 5.514274 ACAGGTGAAAGGTAACAACATTG 57.486 39.130 0.00 0.00 41.41 2.82
66 67 4.340950 ACAGGTGAAAGGTAACAACATTGG 59.659 41.667 0.00 0.00 41.41 3.16
67 68 3.320826 AGGTGAAAGGTAACAACATTGGC 59.679 43.478 0.00 0.00 41.41 4.52
68 69 3.320826 GGTGAAAGGTAACAACATTGGCT 59.679 43.478 0.00 0.00 41.41 4.75
69 70 4.546570 GTGAAAGGTAACAACATTGGCTC 58.453 43.478 0.00 0.00 41.41 4.70
70 71 4.037446 GTGAAAGGTAACAACATTGGCTCA 59.963 41.667 0.00 0.00 41.41 4.26
71 72 4.278170 TGAAAGGTAACAACATTGGCTCAG 59.722 41.667 0.00 0.00 41.41 3.35
72 73 3.508845 AGGTAACAACATTGGCTCAGT 57.491 42.857 0.00 0.00 41.41 3.41
73 74 3.832527 AGGTAACAACATTGGCTCAGTT 58.167 40.909 0.00 0.00 41.41 3.16
74 75 4.215109 AGGTAACAACATTGGCTCAGTTT 58.785 39.130 0.00 0.00 41.41 2.66
75 76 4.037923 AGGTAACAACATTGGCTCAGTTTG 59.962 41.667 0.00 0.00 41.41 2.93
76 77 4.202111 GGTAACAACATTGGCTCAGTTTGT 60.202 41.667 0.00 0.00 0.00 2.83
77 78 3.715628 ACAACATTGGCTCAGTTTGTC 57.284 42.857 0.00 0.00 0.00 3.18
78 79 3.023119 ACAACATTGGCTCAGTTTGTCA 58.977 40.909 0.00 0.00 0.00 3.58
79 80 3.446873 ACAACATTGGCTCAGTTTGTCAA 59.553 39.130 0.00 0.00 0.00 3.18
80 81 3.715628 ACATTGGCTCAGTTTGTCAAC 57.284 42.857 0.00 0.00 0.00 3.18
81 82 3.290710 ACATTGGCTCAGTTTGTCAACT 58.709 40.909 0.00 0.00 44.72 3.16
82 83 4.460263 ACATTGGCTCAGTTTGTCAACTA 58.540 39.130 0.00 0.00 41.69 2.24
83 84 5.072741 ACATTGGCTCAGTTTGTCAACTAT 58.927 37.500 0.00 0.00 41.69 2.12
84 85 5.048504 ACATTGGCTCAGTTTGTCAACTATG 60.049 40.000 0.00 0.00 41.69 2.23
85 86 4.085357 TGGCTCAGTTTGTCAACTATGT 57.915 40.909 0.00 0.00 41.69 2.29
86 87 3.814842 TGGCTCAGTTTGTCAACTATGTG 59.185 43.478 0.00 0.00 41.69 3.21
87 88 4.065088 GGCTCAGTTTGTCAACTATGTGA 58.935 43.478 0.00 0.00 41.69 3.58
88 89 4.515191 GGCTCAGTTTGTCAACTATGTGAA 59.485 41.667 0.00 0.00 41.69 3.18
89 90 5.008613 GGCTCAGTTTGTCAACTATGTGAAA 59.991 40.000 0.00 0.00 41.69 2.69
90 91 6.459573 GGCTCAGTTTGTCAACTATGTGAAAA 60.460 38.462 0.00 0.00 41.69 2.29
91 92 6.972328 GCTCAGTTTGTCAACTATGTGAAAAA 59.028 34.615 0.00 0.00 41.69 1.94
95 96 7.820044 GTTTGTCAACTATGTGAAAAACCAA 57.180 32.000 9.02 0.00 44.70 3.67
96 97 8.245701 GTTTGTCAACTATGTGAAAAACCAAA 57.754 30.769 9.02 0.00 44.70 3.28
97 98 8.379902 GTTTGTCAACTATGTGAAAAACCAAAG 58.620 33.333 9.02 0.00 44.70 2.77
98 99 6.039616 TGTCAACTATGTGAAAAACCAAAGC 58.960 36.000 0.00 0.00 0.00 3.51
99 100 5.462068 GTCAACTATGTGAAAAACCAAAGCC 59.538 40.000 0.00 0.00 0.00 4.35
100 101 4.600692 ACTATGTGAAAAACCAAAGCCC 57.399 40.909 0.00 0.00 0.00 5.19
101 102 2.524569 ATGTGAAAAACCAAAGCCCG 57.475 45.000 0.00 0.00 0.00 6.13
102 103 1.187087 TGTGAAAAACCAAAGCCCGT 58.813 45.000 0.00 0.00 0.00 5.28
103 104 1.135333 TGTGAAAAACCAAAGCCCGTC 59.865 47.619 0.00 0.00 0.00 4.79
104 105 1.135333 GTGAAAAACCAAAGCCCGTCA 59.865 47.619 0.00 0.00 0.00 4.35
105 106 1.825474 TGAAAAACCAAAGCCCGTCAA 59.175 42.857 0.00 0.00 0.00 3.18
106 107 2.159170 TGAAAAACCAAAGCCCGTCAAG 60.159 45.455 0.00 0.00 0.00 3.02
107 108 0.750249 AAAACCAAAGCCCGTCAAGG 59.250 50.000 0.00 0.00 40.63 3.61
108 109 0.106419 AAACCAAAGCCCGTCAAGGA 60.106 50.000 0.00 0.00 45.00 3.36
109 110 0.822121 AACCAAAGCCCGTCAAGGAC 60.822 55.000 0.00 0.00 45.00 3.85
110 111 1.228124 CCAAAGCCCGTCAAGGACA 60.228 57.895 0.00 0.00 45.00 4.02
111 112 1.515521 CCAAAGCCCGTCAAGGACAC 61.516 60.000 0.00 0.00 45.00 3.67
112 113 0.817634 CAAAGCCCGTCAAGGACACA 60.818 55.000 0.00 0.00 45.00 3.72
113 114 0.110486 AAAGCCCGTCAAGGACACAT 59.890 50.000 0.00 0.00 45.00 3.21
114 115 0.981183 AAGCCCGTCAAGGACACATA 59.019 50.000 0.00 0.00 45.00 2.29
115 116 0.537188 AGCCCGTCAAGGACACATAG 59.463 55.000 0.00 0.00 45.00 2.23
116 117 0.462047 GCCCGTCAAGGACACATAGG 60.462 60.000 0.00 0.00 45.00 2.57
117 118 0.178068 CCCGTCAAGGACACATAGGG 59.822 60.000 0.00 0.00 45.00 3.53
118 119 0.902531 CCGTCAAGGACACATAGGGT 59.097 55.000 0.00 0.00 45.00 4.34
119 120 2.104967 CCGTCAAGGACACATAGGGTA 58.895 52.381 0.00 0.00 45.00 3.69
120 121 2.498481 CCGTCAAGGACACATAGGGTAA 59.502 50.000 0.00 0.00 45.00 2.85
121 122 3.134081 CCGTCAAGGACACATAGGGTAAT 59.866 47.826 0.00 0.00 45.00 1.89
122 123 4.383770 CCGTCAAGGACACATAGGGTAATT 60.384 45.833 0.00 0.00 45.00 1.40
123 124 5.163385 CCGTCAAGGACACATAGGGTAATTA 60.163 44.000 0.00 0.00 45.00 1.40
124 125 5.751990 CGTCAAGGACACATAGGGTAATTAC 59.248 44.000 7.09 7.09 32.09 1.89
125 126 5.751990 GTCAAGGACACATAGGGTAATTACG 59.248 44.000 9.46 0.00 32.09 3.18
126 127 4.332428 AGGACACATAGGGTAATTACGC 57.668 45.455 21.62 21.62 39.19 4.42
127 128 3.707611 AGGACACATAGGGTAATTACGCA 59.292 43.478 28.20 17.29 41.10 5.24
128 129 4.347000 AGGACACATAGGGTAATTACGCAT 59.653 41.667 28.20 18.44 41.10 4.73
129 130 4.689345 GGACACATAGGGTAATTACGCATC 59.311 45.833 28.20 16.76 41.10 3.91
130 131 5.510861 GGACACATAGGGTAATTACGCATCT 60.511 44.000 28.20 14.47 41.10 2.90
131 132 5.925509 ACACATAGGGTAATTACGCATCTT 58.074 37.500 28.20 14.17 41.10 2.40
132 133 5.758296 ACACATAGGGTAATTACGCATCTTG 59.242 40.000 28.20 21.47 41.10 3.02
133 134 5.758296 CACATAGGGTAATTACGCATCTTGT 59.242 40.000 28.20 21.66 41.10 3.16
134 135 6.926826 CACATAGGGTAATTACGCATCTTGTA 59.073 38.462 28.20 14.72 41.10 2.41
135 136 7.602644 CACATAGGGTAATTACGCATCTTGTAT 59.397 37.037 28.20 16.00 41.10 2.29
136 137 8.154856 ACATAGGGTAATTACGCATCTTGTATT 58.845 33.333 28.20 11.47 41.10 1.89
137 138 8.999431 CATAGGGTAATTACGCATCTTGTATTT 58.001 33.333 28.20 10.88 41.10 1.40
138 139 7.492352 AGGGTAATTACGCATCTTGTATTTC 57.508 36.000 28.20 3.45 41.10 2.17
139 140 7.280356 AGGGTAATTACGCATCTTGTATTTCT 58.720 34.615 28.20 6.05 41.10 2.52
140 141 8.426489 AGGGTAATTACGCATCTTGTATTTCTA 58.574 33.333 28.20 0.00 41.10 2.10
141 142 8.709646 GGGTAATTACGCATCTTGTATTTCTAG 58.290 37.037 23.54 0.00 38.80 2.43
142 143 9.472361 GGTAATTACGCATCTTGTATTTCTAGA 57.528 33.333 9.46 0.00 33.09 2.43
145 146 9.601217 AATTACGCATCTTGTATTTCTAGAAGT 57.399 29.630 5.12 5.45 31.74 3.01
146 147 8.997621 TTACGCATCTTGTATTTCTAGAAGTT 57.002 30.769 5.75 0.86 31.74 2.66
148 149 8.408743 ACGCATCTTGTATTTCTAGAAGTTAC 57.591 34.615 5.75 11.92 31.74 2.50
149 150 7.491696 ACGCATCTTGTATTTCTAGAAGTTACC 59.508 37.037 18.00 5.59 31.74 2.85
150 151 7.042658 CGCATCTTGTATTTCTAGAAGTTACCC 60.043 40.741 18.00 3.78 31.74 3.69
151 152 7.226918 GCATCTTGTATTTCTAGAAGTTACCCC 59.773 40.741 18.00 2.96 31.74 4.95
152 153 7.191593 TCTTGTATTTCTAGAAGTTACCCCC 57.808 40.000 18.00 2.63 31.74 5.40
153 154 6.964086 TCTTGTATTTCTAGAAGTTACCCCCT 59.036 38.462 18.00 0.00 31.74 4.79
154 155 6.803366 TGTATTTCTAGAAGTTACCCCCTC 57.197 41.667 18.00 1.89 0.00 4.30
155 156 5.361857 TGTATTTCTAGAAGTTACCCCCTCG 59.638 44.000 18.00 0.00 0.00 4.63
156 157 3.463048 TTCTAGAAGTTACCCCCTCGT 57.537 47.619 0.00 0.00 0.00 4.18
157 158 3.010200 TCTAGAAGTTACCCCCTCGTC 57.990 52.381 0.00 0.00 0.00 4.20
158 159 2.030371 CTAGAAGTTACCCCCTCGTCC 58.970 57.143 0.00 0.00 0.00 4.79
159 160 0.616964 AGAAGTTACCCCCTCGTCCC 60.617 60.000 0.00 0.00 0.00 4.46
160 161 0.906282 GAAGTTACCCCCTCGTCCCA 60.906 60.000 0.00 0.00 0.00 4.37
161 162 0.253020 AAGTTACCCCCTCGTCCCAT 60.253 55.000 0.00 0.00 0.00 4.00
162 163 0.638292 AGTTACCCCCTCGTCCCATA 59.362 55.000 0.00 0.00 0.00 2.74
163 164 1.008693 AGTTACCCCCTCGTCCCATAA 59.991 52.381 0.00 0.00 0.00 1.90
164 165 2.052468 GTTACCCCCTCGTCCCATAAT 58.948 52.381 0.00 0.00 0.00 1.28
165 166 3.116629 AGTTACCCCCTCGTCCCATAATA 60.117 47.826 0.00 0.00 0.00 0.98
166 167 2.735259 ACCCCCTCGTCCCATAATAT 57.265 50.000 0.00 0.00 0.00 1.28
167 168 3.858696 ACCCCCTCGTCCCATAATATA 57.141 47.619 0.00 0.00 0.00 0.86
168 169 4.150516 ACCCCCTCGTCCCATAATATAA 57.849 45.455 0.00 0.00 0.00 0.98
169 170 4.101856 ACCCCCTCGTCCCATAATATAAG 58.898 47.826 0.00 0.00 0.00 1.73
170 171 4.202858 ACCCCCTCGTCCCATAATATAAGA 60.203 45.833 0.00 0.00 0.00 2.10
171 172 4.406003 CCCCCTCGTCCCATAATATAAGAG 59.594 50.000 0.00 0.00 0.00 2.85
172 173 4.141914 CCCCTCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
173 174 4.440250 CCCTCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
174 175 4.158025 CCTCGTCCCATAATATAAGAGCGT 59.842 45.833 0.00 0.00 0.00 5.07
175 176 5.336531 CCTCGTCCCATAATATAAGAGCGTT 60.337 44.000 0.00 0.00 0.00 4.84
176 177 6.092955 TCGTCCCATAATATAAGAGCGTTT 57.907 37.500 0.00 0.00 0.00 3.60
177 178 6.518493 TCGTCCCATAATATAAGAGCGTTTT 58.482 36.000 0.00 0.00 0.00 2.43
178 179 6.987992 TCGTCCCATAATATAAGAGCGTTTTT 59.012 34.615 0.00 0.00 0.00 1.94
203 204 9.569122 TTTGGAATAGAGGGTGTATATTTTAGC 57.431 33.333 0.00 0.00 0.00 3.09
204 205 8.270137 TGGAATAGAGGGTGTATATTTTAGCA 57.730 34.615 0.00 0.00 0.00 3.49
205 206 8.719596 TGGAATAGAGGGTGTATATTTTAGCAA 58.280 33.333 0.00 0.00 0.00 3.91
206 207 9.740710 GGAATAGAGGGTGTATATTTTAGCAAT 57.259 33.333 0.00 0.00 0.00 3.56
211 212 9.474313 AGAGGGTGTATATTTTAGCAATTTCAA 57.526 29.630 0.00 0.00 0.00 2.69
278 279 8.032952 TGAATCATCACATTAGTTGACAAGAC 57.967 34.615 0.00 0.00 0.00 3.01
279 280 7.661027 TGAATCATCACATTAGTTGACAAGACA 59.339 33.333 0.00 0.00 0.00 3.41
280 281 8.571461 AATCATCACATTAGTTGACAAGACAT 57.429 30.769 0.00 0.00 0.00 3.06
281 282 7.368480 TCATCACATTAGTTGACAAGACATG 57.632 36.000 0.00 0.00 0.00 3.21
282 283 7.160726 TCATCACATTAGTTGACAAGACATGA 58.839 34.615 0.00 0.29 0.00 3.07
283 284 7.825761 TCATCACATTAGTTGACAAGACATGAT 59.174 33.333 0.00 2.21 0.00 2.45
284 285 9.101655 CATCACATTAGTTGACAAGACATGATA 57.898 33.333 0.00 0.00 0.00 2.15
285 286 8.707938 TCACATTAGTTGACAAGACATGATAG 57.292 34.615 0.00 0.00 0.00 2.08
286 287 8.314021 TCACATTAGTTGACAAGACATGATAGT 58.686 33.333 0.00 0.00 0.00 2.12
287 288 9.586435 CACATTAGTTGACAAGACATGATAGTA 57.414 33.333 0.00 0.00 0.00 1.82
332 333 6.998968 AAAACATCCAGAGACTCATCATTC 57.001 37.500 5.02 0.00 0.00 2.67
333 334 5.688814 AACATCCAGAGACTCATCATTCA 57.311 39.130 5.02 0.00 0.00 2.57
334 335 5.890752 ACATCCAGAGACTCATCATTCAT 57.109 39.130 5.02 0.00 0.00 2.57
335 336 5.612351 ACATCCAGAGACTCATCATTCATG 58.388 41.667 5.02 0.00 0.00 3.07
336 337 4.069300 TCCAGAGACTCATCATTCATGC 57.931 45.455 5.02 0.00 31.70 4.06
337 338 3.139850 CCAGAGACTCATCATTCATGCC 58.860 50.000 5.02 0.00 31.70 4.40
338 339 2.801111 CAGAGACTCATCATTCATGCCG 59.199 50.000 5.02 0.00 31.70 5.69
339 340 2.433604 AGAGACTCATCATTCATGCCGT 59.566 45.455 5.02 0.00 31.70 5.68
340 341 3.638627 AGAGACTCATCATTCATGCCGTA 59.361 43.478 5.02 0.00 31.70 4.02
341 342 4.100035 AGAGACTCATCATTCATGCCGTAA 59.900 41.667 5.02 0.00 31.70 3.18
342 343 4.965814 AGACTCATCATTCATGCCGTAAT 58.034 39.130 0.00 0.00 31.70 1.89
343 344 4.753610 AGACTCATCATTCATGCCGTAATG 59.246 41.667 0.00 0.00 34.96 1.90
344 345 4.454678 ACTCATCATTCATGCCGTAATGT 58.545 39.130 5.14 0.00 35.16 2.71
345 346 5.610398 ACTCATCATTCATGCCGTAATGTA 58.390 37.500 5.14 0.00 35.16 2.29
346 347 5.698089 ACTCATCATTCATGCCGTAATGTAG 59.302 40.000 5.14 4.82 35.16 2.74
347 348 5.852827 TCATCATTCATGCCGTAATGTAGA 58.147 37.500 5.14 2.90 35.16 2.59
348 349 5.928264 TCATCATTCATGCCGTAATGTAGAG 59.072 40.000 5.14 0.00 35.16 2.43
349 350 4.058124 TCATTCATGCCGTAATGTAGAGC 58.942 43.478 5.14 0.00 35.16 4.09
350 351 3.819564 TTCATGCCGTAATGTAGAGCT 57.180 42.857 0.00 0.00 0.00 4.09
351 352 3.371102 TCATGCCGTAATGTAGAGCTC 57.629 47.619 5.27 5.27 0.00 4.09
352 353 2.054363 CATGCCGTAATGTAGAGCTCG 58.946 52.381 8.37 0.00 0.00 5.03
353 354 1.385528 TGCCGTAATGTAGAGCTCGA 58.614 50.000 8.37 0.00 0.00 4.04
354 355 1.954382 TGCCGTAATGTAGAGCTCGAT 59.046 47.619 8.37 0.00 0.00 3.59
355 356 2.031069 TGCCGTAATGTAGAGCTCGATC 60.031 50.000 8.37 3.55 0.00 3.69
356 357 2.031069 GCCGTAATGTAGAGCTCGATCA 60.031 50.000 8.37 9.35 0.00 2.92
357 358 3.550233 GCCGTAATGTAGAGCTCGATCAA 60.550 47.826 8.37 0.00 0.00 2.57
358 359 4.222886 CCGTAATGTAGAGCTCGATCAAG 58.777 47.826 8.37 0.00 0.00 3.02
359 360 4.023963 CCGTAATGTAGAGCTCGATCAAGA 60.024 45.833 8.37 0.00 0.00 3.02
360 361 5.505819 CCGTAATGTAGAGCTCGATCAAGAA 60.506 44.000 8.37 0.00 0.00 2.52
361 362 5.396947 CGTAATGTAGAGCTCGATCAAGAAC 59.603 44.000 8.37 7.87 0.00 3.01
362 363 4.991153 ATGTAGAGCTCGATCAAGAACA 57.009 40.909 8.37 4.64 0.00 3.18
363 364 4.783764 TGTAGAGCTCGATCAAGAACAA 57.216 40.909 8.37 0.00 0.00 2.83
364 365 5.330455 TGTAGAGCTCGATCAAGAACAAT 57.670 39.130 8.37 0.00 0.00 2.71
365 366 5.724328 TGTAGAGCTCGATCAAGAACAATT 58.276 37.500 8.37 0.00 0.00 2.32
366 367 5.578336 TGTAGAGCTCGATCAAGAACAATTG 59.422 40.000 8.37 3.24 0.00 2.32
367 368 4.825422 AGAGCTCGATCAAGAACAATTGA 58.175 39.130 13.59 0.00 43.04 2.57
368 369 4.869297 AGAGCTCGATCAAGAACAATTGAG 59.131 41.667 13.59 0.00 42.20 3.02
369 370 3.678662 GCTCGATCAAGAACAATTGAGC 58.321 45.455 13.59 8.41 46.64 4.26
370 371 4.934075 CTCGATCAAGAACAATTGAGCA 57.066 40.909 13.59 0.00 43.98 4.26
371 372 5.481200 CTCGATCAAGAACAATTGAGCAT 57.519 39.130 13.59 0.00 43.98 3.79
372 373 6.594284 CTCGATCAAGAACAATTGAGCATA 57.406 37.500 13.59 0.00 43.98 3.14
373 374 6.983474 TCGATCAAGAACAATTGAGCATAA 57.017 33.333 13.59 0.00 43.98 1.90
374 375 7.558161 TCGATCAAGAACAATTGAGCATAAT 57.442 32.000 13.59 0.00 43.98 1.28
375 376 7.988737 TCGATCAAGAACAATTGAGCATAATT 58.011 30.769 13.59 0.00 43.98 1.40
376 377 9.108284 TCGATCAAGAACAATTGAGCATAATTA 57.892 29.630 13.59 0.00 43.98 1.40
377 378 9.720667 CGATCAAGAACAATTGAGCATAATTAA 57.279 29.630 13.59 0.00 43.98 1.40
396 397 9.853555 ATAATTAAATTGAACTGTTGATTCGCA 57.146 25.926 0.00 0.00 0.00 5.10
397 398 8.586570 AATTAAATTGAACTGTTGATTCGCAA 57.413 26.923 0.00 0.00 0.00 4.85
398 399 7.993821 TTAAATTGAACTGTTGATTCGCAAA 57.006 28.000 0.00 0.00 38.44 3.68
399 400 6.515043 AAATTGAACTGTTGATTCGCAAAG 57.485 33.333 0.00 0.00 38.44 2.77
400 401 4.891627 TTGAACTGTTGATTCGCAAAGA 57.108 36.364 0.00 0.00 38.44 2.52
401 402 4.891627 TGAACTGTTGATTCGCAAAGAA 57.108 36.364 0.00 0.00 43.93 2.52
402 403 5.242069 TGAACTGTTGATTCGCAAAGAAA 57.758 34.783 0.00 0.00 42.91 2.52
403 404 5.645624 TGAACTGTTGATTCGCAAAGAAAA 58.354 33.333 0.00 0.00 42.91 2.29
404 405 6.096036 TGAACTGTTGATTCGCAAAGAAAAA 58.904 32.000 0.00 0.00 42.91 1.94
405 406 5.949233 ACTGTTGATTCGCAAAGAAAAAC 57.051 34.783 0.00 4.08 42.91 2.43
406 407 5.406649 ACTGTTGATTCGCAAAGAAAAACA 58.593 33.333 10.13 10.13 42.28 2.83
407 408 5.288472 ACTGTTGATTCGCAAAGAAAAACAC 59.712 36.000 7.79 0.00 40.97 3.32
408 409 5.406649 TGTTGATTCGCAAAGAAAAACACT 58.593 33.333 7.79 0.00 40.97 3.55
409 410 5.866633 TGTTGATTCGCAAAGAAAAACACTT 59.133 32.000 7.79 0.00 40.97 3.16
410 411 7.030165 TGTTGATTCGCAAAGAAAAACACTTA 58.970 30.769 7.79 0.00 40.97 2.24
411 412 7.542477 TGTTGATTCGCAAAGAAAAACACTTAA 59.458 29.630 7.79 0.00 40.97 1.85
412 413 8.539674 GTTGATTCGCAAAGAAAAACACTTAAT 58.460 29.630 0.00 0.00 42.91 1.40
413 414 8.641499 TGATTCGCAAAGAAAAACACTTAATT 57.359 26.923 0.00 0.00 42.91 1.40
414 415 8.538856 TGATTCGCAAAGAAAAACACTTAATTG 58.461 29.630 0.00 0.00 42.91 2.32
415 416 8.641499 ATTCGCAAAGAAAAACACTTAATTGA 57.359 26.923 0.00 0.00 42.91 2.57
416 417 8.467402 TTCGCAAAGAAAAACACTTAATTGAA 57.533 26.923 0.00 0.00 35.61 2.69
417 418 8.467402 TCGCAAAGAAAAACACTTAATTGAAA 57.533 26.923 0.00 0.00 0.00 2.69
418 419 9.092876 TCGCAAAGAAAAACACTTAATTGAAAT 57.907 25.926 0.00 0.00 0.00 2.17
451 452 8.560355 AAACAAATAATGGGGAGTATTTTTGC 57.440 30.769 0.00 0.00 29.47 3.68
452 453 7.251321 ACAAATAATGGGGAGTATTTTTGCA 57.749 32.000 0.00 0.00 29.47 4.08
453 454 7.684529 ACAAATAATGGGGAGTATTTTTGCAA 58.315 30.769 0.00 0.00 29.47 4.08
454 455 7.823799 ACAAATAATGGGGAGTATTTTTGCAAG 59.176 33.333 0.00 0.00 29.47 4.01
455 456 7.732222 AATAATGGGGAGTATTTTTGCAAGA 57.268 32.000 0.00 0.00 0.00 3.02
456 457 7.732222 ATAATGGGGAGTATTTTTGCAAGAA 57.268 32.000 4.71 4.71 0.00 2.52
457 458 6.432403 AATGGGGAGTATTTTTGCAAGAAA 57.568 33.333 6.49 7.71 0.00 2.52
458 459 5.878406 TGGGGAGTATTTTTGCAAGAAAA 57.122 34.783 6.49 2.56 33.46 2.29
459 460 6.240549 TGGGGAGTATTTTTGCAAGAAAAA 57.759 33.333 6.49 1.80 32.75 1.94
460 461 6.836242 TGGGGAGTATTTTTGCAAGAAAAAT 58.164 32.000 6.49 9.31 41.24 1.82
461 462 6.709846 TGGGGAGTATTTTTGCAAGAAAAATG 59.290 34.615 14.89 0.00 39.40 2.32
462 463 6.934083 GGGGAGTATTTTTGCAAGAAAAATGA 59.066 34.615 14.89 1.18 39.40 2.57
463 464 7.095229 GGGGAGTATTTTTGCAAGAAAAATGAC 60.095 37.037 14.89 10.17 39.40 3.06
464 465 7.657354 GGGAGTATTTTTGCAAGAAAAATGACT 59.343 33.333 14.89 13.33 39.40 3.41
465 466 9.045223 GGAGTATTTTTGCAAGAAAAATGACTT 57.955 29.630 14.89 0.00 39.40 3.01
466 467 9.853921 GAGTATTTTTGCAAGAAAAATGACTTG 57.146 29.630 14.89 0.00 44.05 3.16
467 468 9.382275 AGTATTTTTGCAAGAAAAATGACTTGT 57.618 25.926 14.89 0.00 43.41 3.16
468 469 9.986833 GTATTTTTGCAAGAAAAATGACTTGTT 57.013 25.926 14.89 0.00 43.41 2.83
469 470 8.898983 ATTTTTGCAAGAAAAATGACTTGTTG 57.101 26.923 6.49 0.00 43.41 3.33
470 471 7.664082 TTTTGCAAGAAAAATGACTTGTTGA 57.336 28.000 0.00 0.00 43.41 3.18
471 472 6.890663 TTGCAAGAAAAATGACTTGTTGAG 57.109 33.333 0.00 0.00 43.41 3.02
472 473 5.350633 TGCAAGAAAAATGACTTGTTGAGG 58.649 37.500 0.00 0.00 43.41 3.86
473 474 4.209911 GCAAGAAAAATGACTTGTTGAGGC 59.790 41.667 0.00 0.00 43.41 4.70
474 475 5.594926 CAAGAAAAATGACTTGTTGAGGCT 58.405 37.500 0.00 0.00 38.72 4.58
475 476 6.735694 GCAAGAAAAATGACTTGTTGAGGCTA 60.736 38.462 0.00 0.00 43.41 3.93
476 477 6.566197 AGAAAAATGACTTGTTGAGGCTAG 57.434 37.500 0.00 0.00 33.09 3.42
477 478 6.299141 AGAAAAATGACTTGTTGAGGCTAGA 58.701 36.000 0.00 0.00 33.09 2.43
478 479 6.772716 AGAAAAATGACTTGTTGAGGCTAGAA 59.227 34.615 0.00 0.00 33.09 2.10
479 480 7.449704 AGAAAAATGACTTGTTGAGGCTAGAAT 59.550 33.333 0.00 0.00 33.09 2.40
480 481 6.506500 AAATGACTTGTTGAGGCTAGAATG 57.493 37.500 0.00 0.00 33.09 2.67
481 482 3.942829 TGACTTGTTGAGGCTAGAATGG 58.057 45.455 0.00 0.00 33.09 3.16
482 483 3.582647 TGACTTGTTGAGGCTAGAATGGA 59.417 43.478 0.00 0.00 33.09 3.41
483 484 4.041567 TGACTTGTTGAGGCTAGAATGGAA 59.958 41.667 0.00 0.00 33.09 3.53
484 485 4.985538 ACTTGTTGAGGCTAGAATGGAAA 58.014 39.130 0.00 0.00 0.00 3.13
485 486 5.574188 ACTTGTTGAGGCTAGAATGGAAAT 58.426 37.500 0.00 0.00 0.00 2.17
486 487 5.416952 ACTTGTTGAGGCTAGAATGGAAATG 59.583 40.000 0.00 0.00 0.00 2.32
487 488 5.178096 TGTTGAGGCTAGAATGGAAATGA 57.822 39.130 0.00 0.00 0.00 2.57
488 489 4.943705 TGTTGAGGCTAGAATGGAAATGAC 59.056 41.667 0.00 0.00 0.00 3.06
489 490 4.156455 TGAGGCTAGAATGGAAATGACC 57.844 45.455 0.00 0.00 0.00 4.02
490 491 3.134458 GAGGCTAGAATGGAAATGACCG 58.866 50.000 0.00 0.00 0.00 4.79
491 492 2.158755 AGGCTAGAATGGAAATGACCGG 60.159 50.000 0.00 0.00 0.00 5.28
492 493 1.604278 GCTAGAATGGAAATGACCGGC 59.396 52.381 0.00 0.00 0.00 6.13
493 494 2.917933 CTAGAATGGAAATGACCGGCA 58.082 47.619 0.00 0.00 0.00 5.69
494 495 2.214376 AGAATGGAAATGACCGGCAA 57.786 45.000 0.00 0.00 0.00 4.52
495 496 2.524306 AGAATGGAAATGACCGGCAAA 58.476 42.857 0.00 0.00 0.00 3.68
496 497 2.231235 AGAATGGAAATGACCGGCAAAC 59.769 45.455 0.00 0.00 0.00 2.93
497 498 1.923356 ATGGAAATGACCGGCAAACT 58.077 45.000 0.00 0.00 0.00 2.66
498 499 2.570415 TGGAAATGACCGGCAAACTA 57.430 45.000 0.00 0.00 0.00 2.24
499 500 2.432444 TGGAAATGACCGGCAAACTAG 58.568 47.619 0.00 0.00 0.00 2.57
500 501 1.743394 GGAAATGACCGGCAAACTAGG 59.257 52.381 0.00 0.00 0.00 3.02
501 502 1.743394 GAAATGACCGGCAAACTAGGG 59.257 52.381 0.00 0.00 0.00 3.53
502 503 0.034477 AATGACCGGCAAACTAGGGG 60.034 55.000 0.00 0.00 0.00 4.79
503 504 1.205460 ATGACCGGCAAACTAGGGGT 61.205 55.000 0.00 0.00 0.00 4.95
504 505 0.544833 TGACCGGCAAACTAGGGGTA 60.545 55.000 0.00 0.00 0.00 3.69
505 506 0.107993 GACCGGCAAACTAGGGGTAC 60.108 60.000 0.00 0.00 0.00 3.34
506 507 1.153509 CCGGCAAACTAGGGGTACG 60.154 63.158 0.00 0.00 0.00 3.67
507 508 1.153509 CGGCAAACTAGGGGTACGG 60.154 63.158 0.00 0.00 0.00 4.02
508 509 1.450848 GGCAAACTAGGGGTACGGC 60.451 63.158 0.00 0.00 0.00 5.68
509 510 1.297364 GCAAACTAGGGGTACGGCA 59.703 57.895 0.00 0.00 0.00 5.69
510 511 0.321830 GCAAACTAGGGGTACGGCAA 60.322 55.000 0.00 0.00 0.00 4.52
511 512 1.445871 CAAACTAGGGGTACGGCAAC 58.554 55.000 0.00 0.00 0.00 4.17
523 524 4.100981 GGCAACGCAAAGTGCAAA 57.899 50.000 0.61 0.00 45.36 3.68
532 533 1.838913 CAAAGTGCAAACGTTCCCTG 58.161 50.000 0.00 0.00 0.00 4.45
533 534 0.744281 AAAGTGCAAACGTTCCCTGG 59.256 50.000 0.00 0.00 0.00 4.45
535 536 2.124109 TGCAAACGTTCCCTGGCA 60.124 55.556 0.00 4.38 0.00 4.92
537 538 1.212751 GCAAACGTTCCCTGGCATC 59.787 57.895 0.00 0.00 0.00 3.91
538 539 1.883021 CAAACGTTCCCTGGCATCC 59.117 57.895 0.00 0.00 0.00 3.51
539 540 1.674322 AAACGTTCCCTGGCATCCG 60.674 57.895 0.00 0.00 0.00 4.18
601 602 2.130073 AAACAGAAAAGGCGCCGCTC 62.130 55.000 23.20 18.46 0.00 5.03
983 984 1.874915 GATACGCGCACGCCACTTA 60.875 57.895 5.73 0.00 45.53 2.24
1113 1114 4.814294 CACTACAGGGGCGTCCGC 62.814 72.222 0.00 2.45 41.52 5.54
1548 1564 1.080093 CTTCTACGAACAGGCCGCA 60.080 57.895 0.00 0.00 0.00 5.69
1801 1820 3.505835 TCCTGCAGGGAACGTTTTT 57.494 47.368 32.23 0.00 41.91 1.94
1882 1901 3.118738 ACCGAGGAGCCTTGTAAATAGTG 60.119 47.826 3.19 0.00 0.00 2.74
2011 2034 8.024865 TGTAGCATGATGAATTTTTCAGAACAG 58.975 33.333 0.00 0.00 43.98 3.16
2037 2061 6.060788 AGTCTCCATCTATTCCATCTTTTGC 58.939 40.000 0.00 0.00 0.00 3.68
2135 2431 2.181777 GCCATCTCTGCGACACGA 59.818 61.111 0.00 0.00 0.00 4.35
2140 2436 0.598562 ATCTCTGCGACACGACAGTT 59.401 50.000 0.00 0.00 34.53 3.16
2158 2454 6.514212 CGACAGTTAATGGTTTGGTGAATTGA 60.514 38.462 0.00 0.00 0.00 2.57
2187 2483 1.277273 CTCTGCATGGACACTTCTGGA 59.723 52.381 0.00 0.00 0.00 3.86
2202 2498 1.004862 TCTGGACTCGACTGACCTGAT 59.995 52.381 0.00 0.00 0.00 2.90
2381 2682 2.029844 GTGGGCACGAGAGACAAGC 61.030 63.158 0.00 0.00 0.00 4.01
2574 2896 3.237741 CGGGGATCCTCTCTGCCC 61.238 72.222 10.68 0.02 39.93 5.36
2620 2942 0.336737 TGGGGTTGGACTTTTGGTGT 59.663 50.000 0.00 0.00 0.00 4.16
2621 2943 0.750249 GGGGTTGGACTTTTGGTGTG 59.250 55.000 0.00 0.00 0.00 3.82
2622 2944 0.750249 GGGTTGGACTTTTGGTGTGG 59.250 55.000 0.00 0.00 0.00 4.17
2625 2947 1.045911 TTGGACTTTTGGTGTGGGGC 61.046 55.000 0.00 0.00 0.00 5.80
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 5.519722 ACGAATGTTTAGGAAGCACTTTTG 58.480 37.500 0.00 0.00 0.00 2.44
8 9 5.298276 TGACGAATGTTTAGGAAGCACTTTT 59.702 36.000 0.00 0.00 0.00 2.27
9 10 4.819630 TGACGAATGTTTAGGAAGCACTTT 59.180 37.500 0.00 0.00 0.00 2.66
10 11 4.385825 TGACGAATGTTTAGGAAGCACTT 58.614 39.130 0.00 0.00 0.00 3.16
11 12 4.002906 TGACGAATGTTTAGGAAGCACT 57.997 40.909 0.00 0.00 0.00 4.40
12 13 4.742438 TTGACGAATGTTTAGGAAGCAC 57.258 40.909 0.00 0.00 0.00 4.40
13 14 5.935206 TGTATTGACGAATGTTTAGGAAGCA 59.065 36.000 0.00 0.00 0.00 3.91
14 15 6.417191 TGTATTGACGAATGTTTAGGAAGC 57.583 37.500 0.00 0.00 0.00 3.86
15 16 7.802738 TGTTGTATTGACGAATGTTTAGGAAG 58.197 34.615 0.00 0.00 0.00 3.46
16 17 7.731882 TGTTGTATTGACGAATGTTTAGGAA 57.268 32.000 0.00 0.00 0.00 3.36
17 18 7.915293 ATGTTGTATTGACGAATGTTTAGGA 57.085 32.000 0.00 0.00 0.00 2.94
18 19 9.485591 GTAATGTTGTATTGACGAATGTTTAGG 57.514 33.333 0.00 0.00 0.00 2.69
21 22 8.020819 CCTGTAATGTTGTATTGACGAATGTTT 58.979 33.333 0.00 0.00 0.00 2.83
22 23 7.174253 ACCTGTAATGTTGTATTGACGAATGTT 59.826 33.333 0.00 0.00 0.00 2.71
23 24 6.653320 ACCTGTAATGTTGTATTGACGAATGT 59.347 34.615 0.00 0.00 0.00 2.71
24 25 6.960992 CACCTGTAATGTTGTATTGACGAATG 59.039 38.462 0.00 0.00 0.00 2.67
25 26 6.876789 TCACCTGTAATGTTGTATTGACGAAT 59.123 34.615 0.00 0.00 0.00 3.34
26 27 6.224584 TCACCTGTAATGTTGTATTGACGAA 58.775 36.000 0.00 0.00 0.00 3.85
27 28 5.785243 TCACCTGTAATGTTGTATTGACGA 58.215 37.500 0.00 0.00 0.00 4.20
28 29 6.474819 TTCACCTGTAATGTTGTATTGACG 57.525 37.500 0.00 0.00 0.00 4.35
29 30 7.040686 ACCTTTCACCTGTAATGTTGTATTGAC 60.041 37.037 0.00 0.00 0.00 3.18
30 31 7.001674 ACCTTTCACCTGTAATGTTGTATTGA 58.998 34.615 0.00 0.00 0.00 2.57
31 32 7.214467 ACCTTTCACCTGTAATGTTGTATTG 57.786 36.000 0.00 0.00 0.00 1.90
32 33 8.789762 GTTACCTTTCACCTGTAATGTTGTATT 58.210 33.333 0.00 0.00 0.00 1.89
33 34 7.940137 TGTTACCTTTCACCTGTAATGTTGTAT 59.060 33.333 0.00 0.00 0.00 2.29
34 35 7.281098 TGTTACCTTTCACCTGTAATGTTGTA 58.719 34.615 0.00 0.00 0.00 2.41
35 36 6.123651 TGTTACCTTTCACCTGTAATGTTGT 58.876 36.000 0.00 0.00 0.00 3.32
36 37 6.627395 TGTTACCTTTCACCTGTAATGTTG 57.373 37.500 0.00 0.00 0.00 3.33
37 38 6.603997 TGTTGTTACCTTTCACCTGTAATGTT 59.396 34.615 0.00 0.00 0.00 2.71
38 39 6.123651 TGTTGTTACCTTTCACCTGTAATGT 58.876 36.000 0.00 0.00 0.00 2.71
39 40 6.627395 TGTTGTTACCTTTCACCTGTAATG 57.373 37.500 0.00 0.00 0.00 1.90
40 41 7.255801 CCAATGTTGTTACCTTTCACCTGTAAT 60.256 37.037 0.00 0.00 0.00 1.89
41 42 6.039941 CCAATGTTGTTACCTTTCACCTGTAA 59.960 38.462 0.00 0.00 0.00 2.41
42 43 5.533154 CCAATGTTGTTACCTTTCACCTGTA 59.467 40.000 0.00 0.00 0.00 2.74
43 44 4.340950 CCAATGTTGTTACCTTTCACCTGT 59.659 41.667 0.00 0.00 0.00 4.00
44 45 4.795962 GCCAATGTTGTTACCTTTCACCTG 60.796 45.833 0.00 0.00 0.00 4.00
45 46 3.320826 GCCAATGTTGTTACCTTTCACCT 59.679 43.478 0.00 0.00 0.00 4.00
46 47 3.320826 AGCCAATGTTGTTACCTTTCACC 59.679 43.478 0.00 0.00 0.00 4.02
47 48 4.037446 TGAGCCAATGTTGTTACCTTTCAC 59.963 41.667 0.00 0.00 0.00 3.18
48 49 4.211125 TGAGCCAATGTTGTTACCTTTCA 58.789 39.130 0.00 0.00 0.00 2.69
49 50 4.278419 ACTGAGCCAATGTTGTTACCTTTC 59.722 41.667 0.00 0.00 0.00 2.62
50 51 4.215109 ACTGAGCCAATGTTGTTACCTTT 58.785 39.130 0.00 0.00 0.00 3.11
51 52 3.832527 ACTGAGCCAATGTTGTTACCTT 58.167 40.909 0.00 0.00 0.00 3.50
52 53 3.508845 ACTGAGCCAATGTTGTTACCT 57.491 42.857 0.00 0.00 0.00 3.08
53 54 4.202111 ACAAACTGAGCCAATGTTGTTACC 60.202 41.667 0.00 0.00 0.00 2.85
54 55 4.932146 ACAAACTGAGCCAATGTTGTTAC 58.068 39.130 0.00 0.00 0.00 2.50
55 56 4.642437 TGACAAACTGAGCCAATGTTGTTA 59.358 37.500 0.00 0.00 0.00 2.41
56 57 3.446873 TGACAAACTGAGCCAATGTTGTT 59.553 39.130 0.00 0.00 0.00 2.83
57 58 3.023119 TGACAAACTGAGCCAATGTTGT 58.977 40.909 0.00 0.00 0.00 3.32
58 59 3.713858 TGACAAACTGAGCCAATGTTG 57.286 42.857 0.00 0.00 0.00 3.33
59 60 3.701040 AGTTGACAAACTGAGCCAATGTT 59.299 39.130 0.00 0.00 45.12 2.71
60 61 3.290710 AGTTGACAAACTGAGCCAATGT 58.709 40.909 0.00 0.00 45.12 2.71
61 62 3.996150 AGTTGACAAACTGAGCCAATG 57.004 42.857 0.00 0.00 45.12 2.82
62 63 5.048504 CACATAGTTGACAAACTGAGCCAAT 60.049 40.000 1.42 0.00 46.30 3.16
63 64 4.275689 CACATAGTTGACAAACTGAGCCAA 59.724 41.667 1.42 0.00 46.30 4.52
64 65 3.814842 CACATAGTTGACAAACTGAGCCA 59.185 43.478 1.42 0.00 46.30 4.75
65 66 4.065088 TCACATAGTTGACAAACTGAGCC 58.935 43.478 1.42 0.00 46.30 4.70
66 67 5.673337 TTCACATAGTTGACAAACTGAGC 57.327 39.130 1.42 0.00 46.30 4.26
67 68 7.432252 GGTTTTTCACATAGTTGACAAACTGAG 59.568 37.037 12.25 0.00 46.30 3.35
68 69 7.094162 TGGTTTTTCACATAGTTGACAAACTGA 60.094 33.333 12.25 1.36 46.30 3.41
69 70 7.032580 TGGTTTTTCACATAGTTGACAAACTG 58.967 34.615 12.25 0.00 46.30 3.16
71 72 7.820044 TTGGTTTTTCACATAGTTGACAAAC 57.180 32.000 6.40 6.40 41.99 2.93
72 73 7.064016 GCTTTGGTTTTTCACATAGTTGACAAA 59.936 33.333 0.00 0.00 0.00 2.83
73 74 6.533367 GCTTTGGTTTTTCACATAGTTGACAA 59.467 34.615 0.00 0.00 0.00 3.18
74 75 6.039616 GCTTTGGTTTTTCACATAGTTGACA 58.960 36.000 0.00 0.00 0.00 3.58
75 76 5.462068 GGCTTTGGTTTTTCACATAGTTGAC 59.538 40.000 0.00 0.00 0.00 3.18
76 77 5.452636 GGGCTTTGGTTTTTCACATAGTTGA 60.453 40.000 0.00 0.00 0.00 3.18
77 78 4.749598 GGGCTTTGGTTTTTCACATAGTTG 59.250 41.667 0.00 0.00 0.00 3.16
78 79 4.500716 CGGGCTTTGGTTTTTCACATAGTT 60.501 41.667 0.00 0.00 0.00 2.24
79 80 3.005367 CGGGCTTTGGTTTTTCACATAGT 59.995 43.478 0.00 0.00 0.00 2.12
80 81 3.005367 ACGGGCTTTGGTTTTTCACATAG 59.995 43.478 0.00 0.00 0.00 2.23
81 82 2.959707 ACGGGCTTTGGTTTTTCACATA 59.040 40.909 0.00 0.00 0.00 2.29
82 83 1.760029 ACGGGCTTTGGTTTTTCACAT 59.240 42.857 0.00 0.00 0.00 3.21
83 84 1.135333 GACGGGCTTTGGTTTTTCACA 59.865 47.619 0.00 0.00 0.00 3.58
84 85 1.135333 TGACGGGCTTTGGTTTTTCAC 59.865 47.619 0.00 0.00 0.00 3.18
85 86 1.475403 TGACGGGCTTTGGTTTTTCA 58.525 45.000 0.00 0.00 0.00 2.69
86 87 2.469826 CTTGACGGGCTTTGGTTTTTC 58.530 47.619 0.00 0.00 0.00 2.29
87 88 1.138069 CCTTGACGGGCTTTGGTTTTT 59.862 47.619 0.00 0.00 0.00 1.94
88 89 0.750249 CCTTGACGGGCTTTGGTTTT 59.250 50.000 0.00 0.00 0.00 2.43
89 90 0.106419 TCCTTGACGGGCTTTGGTTT 60.106 50.000 0.00 0.00 0.00 3.27
90 91 0.822121 GTCCTTGACGGGCTTTGGTT 60.822 55.000 0.00 0.00 33.40 3.67
91 92 1.228154 GTCCTTGACGGGCTTTGGT 60.228 57.895 0.00 0.00 33.40 3.67
92 93 1.228124 TGTCCTTGACGGGCTTTGG 60.228 57.895 0.00 0.00 38.58 3.28
93 94 0.817634 TGTGTCCTTGACGGGCTTTG 60.818 55.000 0.00 0.00 38.58 2.77
94 95 0.110486 ATGTGTCCTTGACGGGCTTT 59.890 50.000 0.00 0.00 38.58 3.51
95 96 0.981183 TATGTGTCCTTGACGGGCTT 59.019 50.000 0.00 0.00 38.58 4.35
96 97 0.537188 CTATGTGTCCTTGACGGGCT 59.463 55.000 0.00 0.00 38.58 5.19
97 98 0.462047 CCTATGTGTCCTTGACGGGC 60.462 60.000 0.00 0.00 38.12 6.13
98 99 0.178068 CCCTATGTGTCCTTGACGGG 59.822 60.000 0.00 0.00 34.95 5.28
99 100 0.902531 ACCCTATGTGTCCTTGACGG 59.097 55.000 0.00 0.00 34.95 4.79
100 101 3.880047 TTACCCTATGTGTCCTTGACG 57.120 47.619 0.00 0.00 34.95 4.35
101 102 5.751990 CGTAATTACCCTATGTGTCCTTGAC 59.248 44.000 10.01 0.00 0.00 3.18
102 103 5.682990 GCGTAATTACCCTATGTGTCCTTGA 60.683 44.000 10.01 0.00 0.00 3.02
103 104 4.510340 GCGTAATTACCCTATGTGTCCTTG 59.490 45.833 10.01 0.00 0.00 3.61
104 105 4.162698 TGCGTAATTACCCTATGTGTCCTT 59.837 41.667 10.01 0.00 0.00 3.36
105 106 3.707611 TGCGTAATTACCCTATGTGTCCT 59.292 43.478 10.01 0.00 0.00 3.85
106 107 4.062677 TGCGTAATTACCCTATGTGTCC 57.937 45.455 10.01 0.00 0.00 4.02
107 108 5.539048 AGATGCGTAATTACCCTATGTGTC 58.461 41.667 10.01 0.00 0.00 3.67
108 109 5.546621 AGATGCGTAATTACCCTATGTGT 57.453 39.130 10.01 0.00 0.00 3.72
109 110 5.758296 ACAAGATGCGTAATTACCCTATGTG 59.242 40.000 10.01 5.04 0.00 3.21
110 111 5.925509 ACAAGATGCGTAATTACCCTATGT 58.074 37.500 10.01 5.55 0.00 2.29
111 112 8.547967 AATACAAGATGCGTAATTACCCTATG 57.452 34.615 10.01 4.99 0.00 2.23
112 113 9.216117 GAAATACAAGATGCGTAATTACCCTAT 57.784 33.333 10.01 2.32 0.00 2.57
113 114 8.426489 AGAAATACAAGATGCGTAATTACCCTA 58.574 33.333 10.01 0.00 0.00 3.53
114 115 7.280356 AGAAATACAAGATGCGTAATTACCCT 58.720 34.615 10.01 0.21 0.00 4.34
115 116 7.492352 AGAAATACAAGATGCGTAATTACCC 57.508 36.000 10.01 1.56 0.00 3.69
116 117 9.472361 TCTAGAAATACAAGATGCGTAATTACC 57.528 33.333 10.01 3.92 0.00 2.85
119 120 9.601217 ACTTCTAGAAATACAAGATGCGTAATT 57.399 29.630 6.63 0.00 0.00 1.40
120 121 9.601217 AACTTCTAGAAATACAAGATGCGTAAT 57.399 29.630 6.63 0.00 0.00 1.89
121 122 8.997621 AACTTCTAGAAATACAAGATGCGTAA 57.002 30.769 6.63 0.00 0.00 3.18
122 123 9.512435 GTAACTTCTAGAAATACAAGATGCGTA 57.488 33.333 17.23 0.00 0.00 4.42
123 124 7.491696 GGTAACTTCTAGAAATACAAGATGCGT 59.508 37.037 20.99 5.49 0.00 5.24
124 125 7.042658 GGGTAACTTCTAGAAATACAAGATGCG 60.043 40.741 20.99 4.99 0.00 4.73
125 126 7.226918 GGGGTAACTTCTAGAAATACAAGATGC 59.773 40.741 20.99 9.19 0.00 3.91
126 127 7.715686 GGGGGTAACTTCTAGAAATACAAGATG 59.284 40.741 20.99 5.96 0.00 2.90
127 128 7.628101 AGGGGGTAACTTCTAGAAATACAAGAT 59.372 37.037 20.99 3.63 0.00 2.40
128 129 6.964086 AGGGGGTAACTTCTAGAAATACAAGA 59.036 38.462 20.99 0.00 0.00 3.02
129 130 7.196637 AGGGGGTAACTTCTAGAAATACAAG 57.803 40.000 20.99 7.58 0.00 3.16
130 131 6.127253 CGAGGGGGTAACTTCTAGAAATACAA 60.127 42.308 20.99 1.30 0.00 2.41
131 132 5.361857 CGAGGGGGTAACTTCTAGAAATACA 59.638 44.000 20.99 2.42 0.00 2.29
132 133 5.362143 ACGAGGGGGTAACTTCTAGAAATAC 59.638 44.000 6.63 11.97 0.00 1.89
133 134 5.522641 ACGAGGGGGTAACTTCTAGAAATA 58.477 41.667 6.63 0.32 0.00 1.40
134 135 4.359996 ACGAGGGGGTAACTTCTAGAAAT 58.640 43.478 6.63 0.00 0.00 2.17
135 136 3.766051 GACGAGGGGGTAACTTCTAGAAA 59.234 47.826 6.63 0.00 0.00 2.52
136 137 3.359950 GACGAGGGGGTAACTTCTAGAA 58.640 50.000 4.81 4.81 0.00 2.10
137 138 2.357569 GGACGAGGGGGTAACTTCTAGA 60.358 54.545 0.00 0.00 0.00 2.43
138 139 2.030371 GGACGAGGGGGTAACTTCTAG 58.970 57.143 0.00 0.00 0.00 2.43
139 140 1.342374 GGGACGAGGGGGTAACTTCTA 60.342 57.143 0.00 0.00 0.00 2.10
140 141 0.616964 GGGACGAGGGGGTAACTTCT 60.617 60.000 0.00 0.00 0.00 2.85
141 142 0.906282 TGGGACGAGGGGGTAACTTC 60.906 60.000 0.00 0.00 0.00 3.01
142 143 0.253020 ATGGGACGAGGGGGTAACTT 60.253 55.000 0.00 0.00 0.00 2.66
143 144 0.638292 TATGGGACGAGGGGGTAACT 59.362 55.000 0.00 0.00 0.00 2.24
144 145 1.499368 TTATGGGACGAGGGGGTAAC 58.501 55.000 0.00 0.00 0.00 2.50
145 146 2.500269 ATTATGGGACGAGGGGGTAA 57.500 50.000 0.00 0.00 0.00 2.85
146 147 3.858696 ATATTATGGGACGAGGGGGTA 57.141 47.619 0.00 0.00 0.00 3.69
147 148 2.735259 ATATTATGGGACGAGGGGGT 57.265 50.000 0.00 0.00 0.00 4.95
148 149 4.359105 TCTTATATTATGGGACGAGGGGG 58.641 47.826 0.00 0.00 0.00 5.40
149 150 4.141914 GCTCTTATATTATGGGACGAGGGG 60.142 50.000 0.00 0.00 0.00 4.79
150 151 4.440250 CGCTCTTATATTATGGGACGAGGG 60.440 50.000 0.00 0.00 0.00 4.30
151 152 4.158025 ACGCTCTTATATTATGGGACGAGG 59.842 45.833 0.00 0.00 0.00 4.63
152 153 5.312120 ACGCTCTTATATTATGGGACGAG 57.688 43.478 0.00 0.00 0.00 4.18
153 154 5.717078 AACGCTCTTATATTATGGGACGA 57.283 39.130 0.00 0.00 0.00 4.20
154 155 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
177 178 9.569122 GCTAAAATATACACCCTCTATTCCAAA 57.431 33.333 0.00 0.00 0.00 3.28
178 179 8.719596 TGCTAAAATATACACCCTCTATTCCAA 58.280 33.333 0.00 0.00 0.00 3.53
179 180 8.270137 TGCTAAAATATACACCCTCTATTCCA 57.730 34.615 0.00 0.00 0.00 3.53
180 181 9.740710 ATTGCTAAAATATACACCCTCTATTCC 57.259 33.333 0.00 0.00 0.00 3.01
185 186 9.474313 TTGAAATTGCTAAAATATACACCCTCT 57.526 29.630 0.00 0.00 0.00 3.69
253 254 7.661027 TGTCTTGTCAACTAATGTGATGATTCA 59.339 33.333 0.00 0.00 0.00 2.57
254 255 8.032952 TGTCTTGTCAACTAATGTGATGATTC 57.967 34.615 0.00 0.00 0.00 2.52
255 256 7.984422 TGTCTTGTCAACTAATGTGATGATT 57.016 32.000 0.00 0.00 0.00 2.57
256 257 7.825761 TCATGTCTTGTCAACTAATGTGATGAT 59.174 33.333 0.00 0.00 0.00 2.45
257 258 7.160726 TCATGTCTTGTCAACTAATGTGATGA 58.839 34.615 0.00 0.00 0.00 2.92
258 259 7.368480 TCATGTCTTGTCAACTAATGTGATG 57.632 36.000 0.00 0.00 0.00 3.07
259 260 9.322773 CTATCATGTCTTGTCAACTAATGTGAT 57.677 33.333 0.00 0.00 0.00 3.06
260 261 8.314021 ACTATCATGTCTTGTCAACTAATGTGA 58.686 33.333 0.00 0.00 0.00 3.58
261 262 8.484641 ACTATCATGTCTTGTCAACTAATGTG 57.515 34.615 0.00 0.00 0.00 3.21
308 309 6.944290 TGAATGATGAGTCTCTGGATGTTTTT 59.056 34.615 0.65 0.00 0.00 1.94
309 310 6.479006 TGAATGATGAGTCTCTGGATGTTTT 58.521 36.000 0.65 0.00 0.00 2.43
310 311 6.058553 TGAATGATGAGTCTCTGGATGTTT 57.941 37.500 0.65 0.00 0.00 2.83
311 312 5.688814 TGAATGATGAGTCTCTGGATGTT 57.311 39.130 0.65 0.00 0.00 2.71
312 313 5.612351 CATGAATGATGAGTCTCTGGATGT 58.388 41.667 0.65 0.00 33.31 3.06
313 314 4.452795 GCATGAATGATGAGTCTCTGGATG 59.547 45.833 0.00 0.00 33.31 3.51
314 315 4.505215 GGCATGAATGATGAGTCTCTGGAT 60.505 45.833 0.00 0.00 33.31 3.41
315 316 3.181457 GGCATGAATGATGAGTCTCTGGA 60.181 47.826 0.00 0.00 33.31 3.86
316 317 3.139850 GGCATGAATGATGAGTCTCTGG 58.860 50.000 0.00 0.00 33.31 3.86
317 318 2.801111 CGGCATGAATGATGAGTCTCTG 59.199 50.000 0.00 0.00 33.31 3.35
318 319 2.433604 ACGGCATGAATGATGAGTCTCT 59.566 45.455 0.00 0.00 33.31 3.10
319 320 2.831333 ACGGCATGAATGATGAGTCTC 58.169 47.619 0.00 0.00 33.31 3.36
320 321 2.996249 ACGGCATGAATGATGAGTCT 57.004 45.000 0.00 0.00 33.31 3.24
321 322 4.512944 ACATTACGGCATGAATGATGAGTC 59.487 41.667 10.81 0.00 36.69 3.36
322 323 4.454678 ACATTACGGCATGAATGATGAGT 58.545 39.130 10.81 0.00 36.69 3.41
323 324 5.928264 TCTACATTACGGCATGAATGATGAG 59.072 40.000 10.81 6.09 36.69 2.90
324 325 5.852827 TCTACATTACGGCATGAATGATGA 58.147 37.500 10.81 6.29 36.69 2.92
325 326 5.390251 GCTCTACATTACGGCATGAATGATG 60.390 44.000 10.81 3.91 36.69 3.07
326 327 4.692625 GCTCTACATTACGGCATGAATGAT 59.307 41.667 10.81 0.68 36.69 2.45
327 328 4.058124 GCTCTACATTACGGCATGAATGA 58.942 43.478 10.81 0.00 36.69 2.57
328 329 4.060900 AGCTCTACATTACGGCATGAATG 58.939 43.478 0.00 0.00 38.70 2.67
329 330 4.310769 GAGCTCTACATTACGGCATGAAT 58.689 43.478 6.43 0.00 0.00 2.57
330 331 3.717707 GAGCTCTACATTACGGCATGAA 58.282 45.455 6.43 0.00 0.00 2.57
331 332 2.287608 CGAGCTCTACATTACGGCATGA 60.288 50.000 12.85 0.00 0.00 3.07
332 333 2.054363 CGAGCTCTACATTACGGCATG 58.946 52.381 12.85 0.00 0.00 4.06
333 334 1.954382 TCGAGCTCTACATTACGGCAT 59.046 47.619 12.85 0.00 0.00 4.40
334 335 1.385528 TCGAGCTCTACATTACGGCA 58.614 50.000 12.85 0.00 0.00 5.69
335 336 2.031069 TGATCGAGCTCTACATTACGGC 60.031 50.000 12.85 0.00 0.00 5.68
336 337 3.898517 TGATCGAGCTCTACATTACGG 57.101 47.619 12.85 0.00 0.00 4.02
337 338 5.096954 TCTTGATCGAGCTCTACATTACG 57.903 43.478 12.85 0.00 0.00 3.18
338 339 6.266323 TGTTCTTGATCGAGCTCTACATTAC 58.734 40.000 12.85 7.83 0.00 1.89
339 340 6.451064 TGTTCTTGATCGAGCTCTACATTA 57.549 37.500 12.85 0.00 0.00 1.90
340 341 5.330455 TGTTCTTGATCGAGCTCTACATT 57.670 39.130 12.85 0.00 0.00 2.71
341 342 4.991153 TGTTCTTGATCGAGCTCTACAT 57.009 40.909 12.85 0.48 0.00 2.29
342 343 4.783764 TTGTTCTTGATCGAGCTCTACA 57.216 40.909 12.85 6.23 0.00 2.74
343 344 5.807520 TCAATTGTTCTTGATCGAGCTCTAC 59.192 40.000 12.85 3.54 30.34 2.59
344 345 5.965922 TCAATTGTTCTTGATCGAGCTCTA 58.034 37.500 12.85 0.00 30.34 2.43
345 346 4.825422 TCAATTGTTCTTGATCGAGCTCT 58.175 39.130 12.85 0.00 30.34 4.09
346 347 4.493872 GCTCAATTGTTCTTGATCGAGCTC 60.494 45.833 2.73 2.73 34.76 4.09
347 348 3.373439 GCTCAATTGTTCTTGATCGAGCT 59.627 43.478 4.94 0.00 34.76 4.09
348 349 3.125829 TGCTCAATTGTTCTTGATCGAGC 59.874 43.478 4.94 5.17 34.76 5.03
349 350 4.934075 TGCTCAATTGTTCTTGATCGAG 57.066 40.909 5.13 3.24 34.76 4.04
350 351 6.983474 TTATGCTCAATTGTTCTTGATCGA 57.017 33.333 5.13 0.00 34.76 3.59
351 352 9.720667 TTAATTATGCTCAATTGTTCTTGATCG 57.279 29.630 5.13 0.00 34.76 3.69
370 371 9.853555 TGCGAATCAACAGTTCAATTTAATTAT 57.146 25.926 0.00 0.00 0.00 1.28
371 372 9.684448 TTGCGAATCAACAGTTCAATTTAATTA 57.316 25.926 0.00 0.00 0.00 1.40
372 373 8.586570 TTGCGAATCAACAGTTCAATTTAATT 57.413 26.923 0.00 0.00 0.00 1.40
373 374 8.586570 TTTGCGAATCAACAGTTCAATTTAAT 57.413 26.923 0.00 0.00 33.73 1.40
374 375 7.918033 TCTTTGCGAATCAACAGTTCAATTTAA 59.082 29.630 0.00 0.00 33.73 1.52
375 376 7.421599 TCTTTGCGAATCAACAGTTCAATTTA 58.578 30.769 0.00 0.00 33.73 1.40
376 377 6.272318 TCTTTGCGAATCAACAGTTCAATTT 58.728 32.000 0.00 0.00 33.73 1.82
377 378 5.830912 TCTTTGCGAATCAACAGTTCAATT 58.169 33.333 0.00 0.00 33.73 2.32
378 379 5.437289 TCTTTGCGAATCAACAGTTCAAT 57.563 34.783 0.00 0.00 33.73 2.57
379 380 4.891627 TCTTTGCGAATCAACAGTTCAA 57.108 36.364 0.00 0.00 33.73 2.69
380 381 4.891627 TTCTTTGCGAATCAACAGTTCA 57.108 36.364 0.00 0.00 33.73 3.18
381 382 6.034470 TGTTTTTCTTTGCGAATCAACAGTTC 59.966 34.615 0.00 0.00 33.54 3.01
382 383 5.866633 TGTTTTTCTTTGCGAATCAACAGTT 59.133 32.000 0.00 0.00 33.54 3.16
383 384 5.288472 GTGTTTTTCTTTGCGAATCAACAGT 59.712 36.000 0.00 0.00 36.56 3.55
384 385 5.516339 AGTGTTTTTCTTTGCGAATCAACAG 59.484 36.000 0.00 0.00 36.56 3.16
385 386 5.406649 AGTGTTTTTCTTTGCGAATCAACA 58.593 33.333 0.00 0.00 34.91 3.33
386 387 5.949233 AGTGTTTTTCTTTGCGAATCAAC 57.051 34.783 0.00 0.00 33.73 3.18
387 388 8.641499 ATTAAGTGTTTTTCTTTGCGAATCAA 57.359 26.923 0.00 0.00 0.00 2.57
388 389 8.538856 CAATTAAGTGTTTTTCTTTGCGAATCA 58.461 29.630 0.00 0.00 0.00 2.57
389 390 8.751335 TCAATTAAGTGTTTTTCTTTGCGAATC 58.249 29.630 2.43 0.00 0.00 2.52
390 391 8.641499 TCAATTAAGTGTTTTTCTTTGCGAAT 57.359 26.923 2.43 0.00 0.00 3.34
391 392 8.467402 TTCAATTAAGTGTTTTTCTTTGCGAA 57.533 26.923 2.43 0.00 0.00 4.70
392 393 8.467402 TTTCAATTAAGTGTTTTTCTTTGCGA 57.533 26.923 2.43 0.00 0.00 5.10
425 426 9.660180 GCAAAAATACTCCCCATTATTTGTTTA 57.340 29.630 0.00 0.00 30.08 2.01
426 427 8.160106 TGCAAAAATACTCCCCATTATTTGTTT 58.840 29.630 0.00 0.00 30.08 2.83
427 428 7.684529 TGCAAAAATACTCCCCATTATTTGTT 58.315 30.769 0.00 0.00 30.08 2.83
428 429 7.251321 TGCAAAAATACTCCCCATTATTTGT 57.749 32.000 0.00 0.00 30.08 2.83
429 430 8.040132 TCTTGCAAAAATACTCCCCATTATTTG 58.960 33.333 0.00 0.00 30.08 2.32
430 431 8.144862 TCTTGCAAAAATACTCCCCATTATTT 57.855 30.769 0.00 0.00 30.69 1.40
431 432 7.732222 TCTTGCAAAAATACTCCCCATTATT 57.268 32.000 0.00 0.00 0.00 1.40
432 433 7.732222 TTCTTGCAAAAATACTCCCCATTAT 57.268 32.000 0.00 0.00 0.00 1.28
433 434 7.546250 TTTCTTGCAAAAATACTCCCCATTA 57.454 32.000 0.00 0.00 0.00 1.90
434 435 6.432403 TTTCTTGCAAAAATACTCCCCATT 57.568 33.333 0.00 0.00 0.00 3.16
435 436 6.432403 TTTTCTTGCAAAAATACTCCCCAT 57.568 33.333 0.00 0.00 0.00 4.00
436 437 5.878406 TTTTCTTGCAAAAATACTCCCCA 57.122 34.783 0.00 0.00 0.00 4.96
437 438 6.934083 TCATTTTTCTTGCAAAAATACTCCCC 59.066 34.615 0.00 0.00 37.64 4.81
438 439 7.657354 AGTCATTTTTCTTGCAAAAATACTCCC 59.343 33.333 0.00 0.00 37.64 4.30
439 440 8.593492 AGTCATTTTTCTTGCAAAAATACTCC 57.407 30.769 0.00 0.00 37.64 3.85
440 441 9.853921 CAAGTCATTTTTCTTGCAAAAATACTC 57.146 29.630 0.00 0.00 37.64 2.59
441 442 9.382275 ACAAGTCATTTTTCTTGCAAAAATACT 57.618 25.926 0.00 6.12 43.05 2.12
442 443 9.986833 AACAAGTCATTTTTCTTGCAAAAATAC 57.013 25.926 0.00 4.21 43.05 1.89
443 444 9.985318 CAACAAGTCATTTTTCTTGCAAAAATA 57.015 25.926 0.00 0.78 43.05 1.40
444 445 8.728833 TCAACAAGTCATTTTTCTTGCAAAAAT 58.271 25.926 0.00 0.87 43.05 1.82
445 446 8.092521 TCAACAAGTCATTTTTCTTGCAAAAA 57.907 26.923 0.00 0.00 43.05 1.94
446 447 7.148440 CCTCAACAAGTCATTTTTCTTGCAAAA 60.148 33.333 0.00 0.00 43.05 2.44
447 448 6.313411 CCTCAACAAGTCATTTTTCTTGCAAA 59.687 34.615 0.00 0.00 43.05 3.68
448 449 5.811613 CCTCAACAAGTCATTTTTCTTGCAA 59.188 36.000 0.00 0.00 43.05 4.08
449 450 5.350633 CCTCAACAAGTCATTTTTCTTGCA 58.649 37.500 5.06 0.00 43.05 4.08
450 451 4.209911 GCCTCAACAAGTCATTTTTCTTGC 59.790 41.667 5.06 0.00 43.05 4.01
451 452 5.594926 AGCCTCAACAAGTCATTTTTCTTG 58.405 37.500 0.00 0.00 44.29 3.02
452 453 5.859205 AGCCTCAACAAGTCATTTTTCTT 57.141 34.783 0.00 0.00 0.00 2.52
453 454 6.299141 TCTAGCCTCAACAAGTCATTTTTCT 58.701 36.000 0.00 0.00 0.00 2.52
454 455 6.560253 TCTAGCCTCAACAAGTCATTTTTC 57.440 37.500 0.00 0.00 0.00 2.29
455 456 6.959639 TTCTAGCCTCAACAAGTCATTTTT 57.040 33.333 0.00 0.00 0.00 1.94
456 457 6.071728 CCATTCTAGCCTCAACAAGTCATTTT 60.072 38.462 0.00 0.00 0.00 1.82
457 458 5.416952 CCATTCTAGCCTCAACAAGTCATTT 59.583 40.000 0.00 0.00 0.00 2.32
458 459 4.946157 CCATTCTAGCCTCAACAAGTCATT 59.054 41.667 0.00 0.00 0.00 2.57
459 460 4.225942 TCCATTCTAGCCTCAACAAGTCAT 59.774 41.667 0.00 0.00 0.00 3.06
460 461 3.582647 TCCATTCTAGCCTCAACAAGTCA 59.417 43.478 0.00 0.00 0.00 3.41
461 462 4.207891 TCCATTCTAGCCTCAACAAGTC 57.792 45.455 0.00 0.00 0.00 3.01
462 463 4.640771 TTCCATTCTAGCCTCAACAAGT 57.359 40.909 0.00 0.00 0.00 3.16
463 464 5.649395 TCATTTCCATTCTAGCCTCAACAAG 59.351 40.000 0.00 0.00 0.00 3.16
464 465 5.415701 GTCATTTCCATTCTAGCCTCAACAA 59.584 40.000 0.00 0.00 0.00 2.83
465 466 4.943705 GTCATTTCCATTCTAGCCTCAACA 59.056 41.667 0.00 0.00 0.00 3.33
466 467 4.336713 GGTCATTTCCATTCTAGCCTCAAC 59.663 45.833 0.00 0.00 0.00 3.18
467 468 4.526970 GGTCATTTCCATTCTAGCCTCAA 58.473 43.478 0.00 0.00 0.00 3.02
468 469 3.432186 CGGTCATTTCCATTCTAGCCTCA 60.432 47.826 0.00 0.00 0.00 3.86
469 470 3.134458 CGGTCATTTCCATTCTAGCCTC 58.866 50.000 0.00 0.00 0.00 4.70
470 471 2.158755 CCGGTCATTTCCATTCTAGCCT 60.159 50.000 0.00 0.00 0.00 4.58
471 472 2.222027 CCGGTCATTTCCATTCTAGCC 58.778 52.381 0.00 0.00 0.00 3.93
472 473 1.604278 GCCGGTCATTTCCATTCTAGC 59.396 52.381 1.90 0.00 0.00 3.42
473 474 2.917933 TGCCGGTCATTTCCATTCTAG 58.082 47.619 1.90 0.00 0.00 2.43
474 475 3.358111 TTGCCGGTCATTTCCATTCTA 57.642 42.857 1.90 0.00 0.00 2.10
475 476 2.214376 TTGCCGGTCATTTCCATTCT 57.786 45.000 1.90 0.00 0.00 2.40
476 477 2.231235 AGTTTGCCGGTCATTTCCATTC 59.769 45.455 1.90 0.00 0.00 2.67
477 478 2.247358 AGTTTGCCGGTCATTTCCATT 58.753 42.857 1.90 0.00 0.00 3.16
478 479 1.923356 AGTTTGCCGGTCATTTCCAT 58.077 45.000 1.90 0.00 0.00 3.41
479 480 2.432444 CTAGTTTGCCGGTCATTTCCA 58.568 47.619 1.90 0.00 0.00 3.53
480 481 1.743394 CCTAGTTTGCCGGTCATTTCC 59.257 52.381 1.90 0.00 0.00 3.13
481 482 1.743394 CCCTAGTTTGCCGGTCATTTC 59.257 52.381 1.90 0.00 0.00 2.17
482 483 1.615919 CCCCTAGTTTGCCGGTCATTT 60.616 52.381 1.90 0.00 0.00 2.32
483 484 0.034477 CCCCTAGTTTGCCGGTCATT 60.034 55.000 1.90 0.00 0.00 2.57
484 485 1.205460 ACCCCTAGTTTGCCGGTCAT 61.205 55.000 1.90 0.00 0.00 3.06
485 486 0.544833 TACCCCTAGTTTGCCGGTCA 60.545 55.000 1.90 0.00 0.00 4.02
486 487 0.107993 GTACCCCTAGTTTGCCGGTC 60.108 60.000 1.90 0.00 0.00 4.79
487 488 1.891722 CGTACCCCTAGTTTGCCGGT 61.892 60.000 1.90 0.00 0.00 5.28
488 489 1.153509 CGTACCCCTAGTTTGCCGG 60.154 63.158 0.00 0.00 0.00 6.13
489 490 1.153509 CCGTACCCCTAGTTTGCCG 60.154 63.158 0.00 0.00 0.00 5.69
490 491 1.450848 GCCGTACCCCTAGTTTGCC 60.451 63.158 0.00 0.00 0.00 4.52
491 492 0.321830 TTGCCGTACCCCTAGTTTGC 60.322 55.000 0.00 0.00 0.00 3.68
492 493 1.445871 GTTGCCGTACCCCTAGTTTG 58.554 55.000 0.00 0.00 0.00 2.93
493 494 0.037046 CGTTGCCGTACCCCTAGTTT 60.037 55.000 0.00 0.00 0.00 2.66
494 495 1.593265 CGTTGCCGTACCCCTAGTT 59.407 57.895 0.00 0.00 0.00 2.24
495 496 3.010413 GCGTTGCCGTACCCCTAGT 62.010 63.158 0.00 0.00 36.15 2.57
496 497 2.202837 GCGTTGCCGTACCCCTAG 60.203 66.667 0.00 0.00 36.15 3.02
497 498 2.109517 TTTGCGTTGCCGTACCCCTA 62.110 55.000 0.00 0.00 36.15 3.53
498 499 3.479127 TTTGCGTTGCCGTACCCCT 62.479 57.895 0.00 0.00 36.15 4.79
499 500 2.973316 CTTTGCGTTGCCGTACCCC 61.973 63.158 0.00 0.00 36.15 4.95
500 501 2.255881 ACTTTGCGTTGCCGTACCC 61.256 57.895 0.00 0.00 36.15 3.69
501 502 1.082366 CACTTTGCGTTGCCGTACC 60.082 57.895 0.00 0.00 36.15 3.34
502 503 1.724581 GCACTTTGCGTTGCCGTAC 60.725 57.895 0.00 0.00 31.71 3.67
503 504 2.634777 GCACTTTGCGTTGCCGTA 59.365 55.556 0.00 0.00 31.71 4.02
519 520 1.212751 GATGCCAGGGAACGTTTGC 59.787 57.895 0.46 1.58 0.00 3.68
520 521 1.883021 GGATGCCAGGGAACGTTTG 59.117 57.895 0.46 0.00 0.00 2.93
523 524 2.311688 GATCGGATGCCAGGGAACGT 62.312 60.000 8.03 0.00 0.00 3.99
554 555 3.258123 ACCGGCAGAGTTTAAATTTGCAT 59.742 39.130 9.87 0.00 36.53 3.96
560 561 1.834188 CCCACCGGCAGAGTTTAAAT 58.166 50.000 0.00 0.00 0.00 1.40
572 573 1.539827 CTTTTCTGTTTAGCCCACCGG 59.460 52.381 0.00 0.00 0.00 5.28
983 984 0.394762 CATGGGTGCAGCAGGTGTAT 60.395 55.000 19.06 0.00 0.00 2.29
1516 1532 2.159282 CGTAGAAGAAGTACGGGTGCAT 60.159 50.000 0.00 0.00 39.67 3.96
1882 1901 1.627550 GCTCTGTTCTCGGCGGAAAC 61.628 60.000 7.21 12.44 0.00 2.78
2011 2034 7.255070 GCAAAAGATGGAATAGATGGAGACTTC 60.255 40.741 0.00 0.00 34.84 3.01
2037 2061 5.106157 ACCATAAATCTTGCCTTTCTGAACG 60.106 40.000 0.00 0.00 0.00 3.95
2135 2431 6.723298 TCAATTCACCAAACCATTAACTGT 57.277 33.333 0.00 0.00 0.00 3.55
2140 2436 5.533154 AGACGTTCAATTCACCAAACCATTA 59.467 36.000 0.00 0.00 0.00 1.90
2158 2454 0.969149 TCCATGCAGAGTGAGACGTT 59.031 50.000 0.00 0.00 0.00 3.99
2187 2483 0.529833 CAGCATCAGGTCAGTCGAGT 59.470 55.000 0.00 0.00 0.00 4.18
2202 2498 3.453717 AGCTCAATTACTCCTGATCAGCA 59.546 43.478 17.76 0.58 0.00 4.41
2381 2682 1.729470 CCATCCCTCTCTCGTCCACG 61.729 65.000 0.00 0.00 41.45 4.94
2635 2957 0.541863 CTCCGCTCCAACCATTACCT 59.458 55.000 0.00 0.00 0.00 3.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.